RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10510
         (91 letters)



>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas
           viridis [TaxId: 1079]}
          Length = 273

 Score = 24.6 bits (54), Expect = 1.7
 Identities = 6/23 (26%), Positives = 14/23 (60%)

Query: 19  VAVVLTKPILVYCTVVLTKPILV 41
           V +    PI ++C + + +P+L+
Sbjct: 117 VPLAFCVPIFMFCVLQVFRPLLL 139


>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum
           [TaxId: 1050]}
          Length = 280

 Score = 24.3 bits (53), Expect = 2.1
 Identities = 6/23 (26%), Positives = 11/23 (47%)

Query: 19  VAVVLTKPILVYCTVVLTKPILV 41
           V    +  I  Y  +V  +P+L+
Sbjct: 125 VPFAFSFAIGAYLVLVFVRPLLM 147


>d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter
           sphaeroides [TaxId: 1063]}
          Length = 281

 Score = 24.3 bits (53), Expect = 2.2
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 19  VAVVLTKPILVYCTVVLTKPILV 41
           +       IL Y T+VL +P+++
Sbjct: 117 IPFAFAFAILAYLTLVLFRPVMM 139


>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum
           [TaxId: 1050]}
          Length = 318

 Score = 23.9 bits (52), Expect = 3.4
 Identities = 3/22 (13%), Positives = 9/22 (40%)

Query: 19  VAVVLTKPILVYCTVVLTKPIL 40
           ++      I  Y  +   +P++
Sbjct: 145 LSWAFAAAIFFYLVLGFIRPVM 166


>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase
          (ACC synthase) {Tomato (Lycopersicon esculentum)
          [TaxId: 4081]}
          Length = 428

 Score = 23.8 bits (50), Expect = 4.6
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 61 PAQGMIEFRDALTDLLEE 78
             G+ EFR A+   +E+
Sbjct: 81 DYHGLPEFRKAIAKFMEK 98


>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1
           {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 335

 Score = 23.6 bits (51), Expect = 4.8
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 19  VAVVLTKPILVYCTVVLTKPIL 40
           + V  + P+     V L  PI 
Sbjct: 134 ICVAYSAPLASAFAVFLIYPIG 155


>d2d9qb1 b.1.1.3 (B:3-96) Granulocyte colony-stimulating factor
          (GC-SF) receptor, N-terminal domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 94

 Score = 22.5 bits (48), Expect = 8.4
 Identities = 9/27 (33%), Positives = 10/27 (37%)

Query: 32 TVVLTKPILVYCTVSQTIPRGGPRSQI 58
           V L  PI   C + Q      P  QI
Sbjct: 10 IVHLGDPITASCIIKQNCSHLDPEPQI 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0687    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 336,617
Number of extensions: 13058
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 8
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)