BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10512
(629 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 121/412 (29%), Positives = 173/412 (41%), Gaps = 78/412 (18%)
Query: 93 FSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTRE 152
FS+ + LL T L L RRYG+ G NG GKSTL+ + N +V D F
Sbjct: 441 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV------DGFP---- 490
Query: 153 MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARA 212
+E R + + D S + D + + T EA
Sbjct: 491 ---------------TQEECRTVYVEHDIDGTHSDTS------VLDFVFESGVGTKEAIK 529
Query: 213 ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLE 272
++ GFT EM SGGW+M++ALARA+ +LLLDEPTNHLD WL
Sbjct: 530 DKLIE-FGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLV 588
Query: 273 EELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQY 332
L T + ISH FL+ VC II+ + KL+ Y GN+ F K K Y
Sbjct: 589 NYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKC-----PAAKAY 643
Query: 333 NWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLXXXXXXXXXXXXXXPSC 392
+ N F ++K+K + K
Sbjct: 644 E-------ELSNTDLEFKFPEPGYLEGVKTKQKAIVK----------------------- 673
Query: 393 GKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452
V N+ F+Y ++ F L +R+A++GPNGAGKSTL+N++ G+L
Sbjct: 674 ---------VTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 724
Query: 453 PSVGMVRKNSHLRFARYHQHLHELLD--LDISPLDYMLQSFPEVKDREEMRK 502
P+ G V + + R A QH ++ LD +P +Y+ F +DRE M +
Sbjct: 725 PTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDR 776
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 518 IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDF 577
IR LS GQK ++V A WQ PHL++LDEPTN+LD +++ AL+ A+ +FEGG+++++H
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 958
Query: 578 RLINQVAEEIWICENGKVT 596
+ EE+W ++G++T
Sbjct: 959 EFTKNLTEEVWAVKDGRMT 977
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 13/192 (6%)
Query: 429 RLALVGPNGAGKSTLLNLIYG---DLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLD 485
R + GPNG GKSTL+ I D P+ R Y +H + D S LD
Sbjct: 463 RYGICGPNGCGKSTLMRAIANGQVDGFPTQEECR-------TVYVEHDIDGTHSDTSVLD 515
Query: 486 YMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545
++ +S V +E ++ + +G T PI LS G K ++ A + +LLLD
Sbjct: 516 FVFES--GVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLD 573
Query: 546 EPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605
EPTNHLD + L + +N + +SHD ++ V E I E K+ K++GN ++
Sbjct: 574 EPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633
Query: 606 -KETLRAKVLKE 616
K+ AK +E
Sbjct: 634 VKKCPAAKAYEE 645
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 219 LGFTKEM-QQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT 277
LG E+ + + SGG ++++ LA + +PHL++LDEPTN+LD D+ L + LK
Sbjct: 887 LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 946
Query: 278 YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNY 314
++ ++II+HS +F + + + ++ G N+
Sbjct: 947 FEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNW 983
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCG--RRYGLLGLNGSGKSTLLAVLGNREVPVPDHI 144
VK+ N + G Q T + C R ++G NG+GKSTL+ VL +P +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 167/408 (40%), Gaps = 78/408 (19%)
Query: 93 FSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTRE 152
FS+ + LL T L L RRYG+ G NG GKSTL + N +V D F
Sbjct: 441 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQV------DGFPT--- 491
Query: 153 MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARA 212
+E R + + D S + D + + T EA
Sbjct: 492 ----------------QEECRTVYVEHDIDGTHSDTS------VLDFVFESGVGTKEAIK 529
Query: 213 ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLE 272
++ GFT E SGGW+ ++ALARA+ +LLLDEPTNHLD WL
Sbjct: 530 DKLIE-FGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLV 588
Query: 273 EELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQY 332
L T + ISH FL+ VC II+ + KL+ Y GN+ F K K Y
Sbjct: 589 NYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKC-----PAAKAY 643
Query: 333 NWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLXXXXXXXXXXXXXXPSC 392
+ N F ++K+K + K
Sbjct: 644 E-------ELSNTDLEFKFPEPGYLEGVKTKQKAIVK----------------------- 673
Query: 393 GKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452
V N F+Y ++ F L +R+A++GPNGAGKSTL+N++ G+L
Sbjct: 674 ---------VTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 724
Query: 453 PSVGMVRKNSHLRFARYHQHLHELLD--LDISPLDYMLQSFPEVKDRE 498
P+ G V + + R A QH ++ LD +P +Y+ F +DRE
Sbjct: 725 PTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRE 772
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 56/79 (70%)
Query: 518 IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDF 577
IR LS GQK ++V A WQ PHL++LDEPTN+LD +++ AL+ A+ +FEGG+++++H
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 958
Query: 578 RLINQVAEEIWICENGKVT 596
+ EE+W ++G+ T
Sbjct: 959 EFTKNLTEEVWAVKDGRXT 977
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 90/192 (46%), Gaps = 13/192 (6%)
Query: 429 RLALVGPNGAGKSTLLNLIYG---DLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLD 485
R + GPNG GKSTL I D P+ R Y +H + D S LD
Sbjct: 463 RYGICGPNGCGKSTLXRAIANGQVDGFPTQEECR-------TVYVEHDIDGTHSDTSVLD 515
Query: 486 YMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545
++ +S V +E ++ + +G T PI LS G K ++ A + +LLLD
Sbjct: 516 FVFES--GVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLD 573
Query: 546 EPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605
EPTNHLD + L + +N + +SHD ++ V E I E K+ K++GN ++
Sbjct: 574 EPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633
Query: 606 -KETLRAKVLKE 616
K+ AK +E
Sbjct: 634 VKKCPAAKAYEE 645
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 219 LGFTKEM-QQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT 277
LG E+ + + SGG ++++ LA + +PHL++LDEPTN+LD D+ L + LK
Sbjct: 887 LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 946
Query: 278 YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNY 314
++ ++II+HS +F + + + + G N+
Sbjct: 947 FEGGVIIITHSAEFTKNLTEEVWAVKDGRXTPSGHNW 983
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCG--RRYGLLGLNGSGKSTLLAVLGNREVPVPDHI 144
VK+ N + G Q T + C R ++G NG+GKSTL+ VL +P +
Sbjct: 672 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 167/408 (40%), Gaps = 78/408 (19%)
Query: 93 FSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTRE 152
FS+ + LL T L L RRYG+ G NG GKSTL + N +V D F
Sbjct: 435 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQV------DGFPT--- 485
Query: 153 MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARA 212
+E R + + D S + D + + T EA
Sbjct: 486 ----------------QEECRTVYVEHDIDGTHSDTS------VLDFVFESGVGTKEAIK 523
Query: 213 ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLE 272
++ GFT E SGGW+ ++ALARA+ +LLLDEPTNHLD WL
Sbjct: 524 DKLIE-FGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLV 582
Query: 273 EELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQY 332
L T + ISH FL+ VC II+ + KL+ Y GN+ F K K Y
Sbjct: 583 NYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKC-----PAAKAY 637
Query: 333 NWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLXXXXXXXXXXXXXXPSC 392
+ N F ++K+K + K
Sbjct: 638 E-------ELSNTDLEFKFPEPGYLEGVKTKQKAIVK----------------------- 667
Query: 393 GKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452
V N F+Y ++ F L +R+A++GPNGAGKSTL+N++ G+L
Sbjct: 668 ---------VTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 718
Query: 453 PSVGMVRKNSHLRFARYHQHLHELLD--LDISPLDYMLQSFPEVKDRE 498
P+ G V + + R A QH ++ LD +P +Y+ F +DRE
Sbjct: 719 PTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRE 766
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 56/79 (70%)
Query: 518 IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDF 577
IR LS GQK ++V A WQ PHL++LDEPTN+LD +++ AL+ A+ +FEGG+++++H
Sbjct: 893 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 952
Query: 578 RLINQVAEEIWICENGKVT 596
+ EE+W ++G+ T
Sbjct: 953 EFTKNLTEEVWAVKDGRXT 971
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 90/192 (46%), Gaps = 13/192 (6%)
Query: 429 RLALVGPNGAGKSTLLNLIYG---DLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLD 485
R + GPNG GKSTL I D P+ R Y +H + D S LD
Sbjct: 457 RYGICGPNGCGKSTLXRAIANGQVDGFPTQEECR-------TVYVEHDIDGTHSDTSVLD 509
Query: 486 YMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545
++ +S V +E ++ + +G T PI LS G K ++ A + +LLLD
Sbjct: 510 FVFES--GVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLD 567
Query: 546 EPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605
EPTNHLD + L + +N + +SHD ++ V E I E K+ K++GN ++
Sbjct: 568 EPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 627
Query: 606 -KETLRAKVLKE 616
K+ AK +E
Sbjct: 628 VKKCPAAKAYEE 639
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 219 LGFTKEM-QQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT 277
LG E+ + + SGG ++++ LA + +PHL++LDEPTN+LD D+ L + LK
Sbjct: 881 LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 940
Query: 278 YKRILVIISHSQDF 291
++ ++II+HS +F
Sbjct: 941 FEGGVIIITHSAEF 954
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCG--RRYGLLGLNGSGKSTLLAVLGNREVPVPDHI 144
VK+ N + G Q T + C R ++G NG+GKSTL+ VL +P +
Sbjct: 666 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 112/500 (22%), Positives = 203/500 (40%), Gaps = 89/500 (17%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVP--VPDHIDIFHLTREMPASDKSALTCVMEVDEE 170
G G++G NG+GK+T + +L + +P D+ ++ R ++ ++ E
Sbjct: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 162
Query: 171 RVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKT 230
R ++ L+ +L+ D + E N+L +E+ Q
Sbjct: 163 RPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD-----RELHQ--- 214
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD---ACVWLEEELKTYKRILVIISH 287
SGG R+A+A AL K H DEP+++LD+ + L + ++++ H
Sbjct: 215 --LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 272
Query: 288 SQDFLNGVCTNIIHLDKRKLKYYG--GNYEAFCKTRLELLENQMKQY--NWEQDQIAHMK 343
L+ +++IH+ YG G Y F K + N + ++ + +D+ +
Sbjct: 273 DLAVLD-YLSDVIHV------VYGEPGVYGIFSKPKGT--RNGINEFLQGYLKDENVRFR 323
Query: 344 NYIARFGHGSAKLARQAQSKEKTLAKMVNQGLXXXXXXXXXXXXXXPSCGKIPPPVIMVQ 403
Y RF KL+ + + +TL + P ++
Sbjct: 324 PYEIRF----TKLSERVDVERETLVEY---------------------------PRLVKD 352
Query: 404 NVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH 463
SF+ + I + GI VGPNG GK+T + ++ G P+ G V +
Sbjct: 353 YGSFKLEVEPGEIRKGEVIGI--------VGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT 404
Query: 464 LRF------ARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVC 516
+ + A Y ++ELL +D S L+ + E+ K +G L R
Sbjct: 405 VAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFY-------KTELLKPLGIIDLYDRN--- 454
Query: 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVL 572
+ LS G+ RV A + + LLDEP+ +LD+E A++ AI E ++
Sbjct: 455 -VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 513
Query: 573 VSHDFRLINQVAEEIWICEN 592
V HD +I+ V++ + + E
Sbjct: 514 VEHDVLMIDYVSDRLIVFEG 533
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 112/500 (22%), Positives = 203/500 (40%), Gaps = 89/500 (17%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVP--VPDHIDIFHLTREMPASDKSALTCVMEVDEE 170
G G++G NG+GK+T + +L + +P D+ ++ R ++ ++ E
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 176
Query: 171 RVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKT 230
R ++ L+ +L+ D + E N+L +E+ Q
Sbjct: 177 RPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVL-----DRELHQ--- 228
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD---ACVWLEEELKTYKRILVIISH 287
SGG R+A+A AL K H DEP+++LD+ + L + ++++ H
Sbjct: 229 --LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 286
Query: 288 SQDFLNGVCTNIIHLDKRKLKYYG--GNYEAFCKTRLELLENQMKQY--NWEQDQIAHMK 343
L+ +++IH+ YG G Y F K + N + ++ + +D+ +
Sbjct: 287 DLAVLD-YLSDVIHV------VYGEPGVYGIFSKPKGT--RNGINEFLQGYLKDENVRFR 337
Query: 344 NYIARFGHGSAKLARQAQSKEKTLAKMVNQGLXXXXXXXXXXXXXXPSCGKIPPPVIMVQ 403
Y RF KL+ + + +TL + P ++
Sbjct: 338 PYEIRF----TKLSERVDVERETLVEY---------------------------PRLVKD 366
Query: 404 NVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH 463
SF+ + I + GI VGPNG GK+T + ++ G P+ G V +
Sbjct: 367 YGSFKLEVEPGEIRKGEVIGI--------VGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT 418
Query: 464 LRF------ARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVC 516
+ + A Y ++ELL +D S L+ + E+ K +G L R
Sbjct: 419 VAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFY-------KTELLKPLGIIDLYDRN--- 468
Query: 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVL 572
+ LS G+ RV A + + LLDEP+ +LD+E A++ AI E ++
Sbjct: 469 -VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527
Query: 573 VSHDFRLINQVAEEIWICEN 592
V HD +I+ V++ + + E
Sbjct: 528 VEHDVLMIDYVSDRLIVFEG 547
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 105/232 (45%), Gaps = 33/232 (14%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI-FHLTREM-PASDKS 159
+ QD L + G L+G +GSGKST+L++L P I + H R++ P +S
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAE--ARAANILH 217
+ V +E + L +C E +I DD S+ TAE R A + +
Sbjct: 450 KIGT---VSQEPI--------LFSCSIAE------NIAYGADDPSSVTAEEIQRVAEVAN 492
Query: 218 GLGFTKEMQQ-------KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVW 270
+ F + Q +K SGG + RIA+ARAL P +LLLDE T+ LD +
Sbjct: 493 AVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYL 552
Query: 271 LEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319
++E L + +LVI H N + LD+ K+ YG + E K
Sbjct: 553 VQEALDRLMDGRTVLVIAHHLSTIKNANMVAV--LDQGKITEYGKHEELLSK 602
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 36/225 (16%)
Query: 403 QNVSFRYS--DDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460
+NV F Y + P I+++ I + ALVGP+G+GKST+L+L+ P+ G +
Sbjct: 376 KNVHFAYPARPEVP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISL 434
Query: 461 NSH---------LRFARYHQHLHELLDLDISPLDYMLQSF--PEVKDREEMRKII----- 504
+ H LR ++ E + S + + P EE++++
Sbjct: 435 DGHDIRQLNPVWLR-SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANA 493
Query: 505 ---------GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
G + G + V LS GQK R+ A + P +LLLDE T+ LD E
Sbjct: 494 VAFIRNFPQGFNTVVGEKGVL----LSGGQKQRIAIARALLKNPKILLLDEATSALDAEN 549
Query: 556 IDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTKW 598
+ +A++ G +++++H I A + + + GK+T++
Sbjct: 550 EYLVQEALDRLMDGRTVLVIAHHLSTIKN-ANMVAVLDQGKITEY 593
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 28/222 (12%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG--- 456
I+V+NVS + N+ I+ R ++GP+GAGK+T + +I G PS G
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 457 ----MVRKNSHLRFARYHQHLHELLDL-----------DIS-PLDYMLQSFPEVKDR-EE 499
+V N L + + + +I+ PL M S E++ R EE
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 500 MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559
+ KI+ + + P R+LS GQ+ RV A + P LLLLDEP ++LD D+
Sbjct: 124 VAKILDIHHVLNH---FP-RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 560 ADAINDFEG----GLVLVSHDFRLINQVAEEIWICENGKVTK 597
+ + + L++VSHD I +A+ + + GK+ +
Sbjct: 180 RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ 221
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 113/238 (47%), Gaps = 36/238 (15%)
Query: 90 IANFSITFHGCEL--LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+ N S F ++ L + + + G R+G+LG +G+GK+T + ++ +VP +
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL--- 62
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLE----KLAEQLVACEDDESQEQLM-----DIYD 198
+ + AS+ ++ ++ ++ + L L A E+ M +I
Sbjct: 63 YFDDRLVASNGK---LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 199 RLDDISADTAEARAANILHGLG-FTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
R++++ A+ +I H L F +E+ SGG + R+ALARAL P LLLLD
Sbjct: 120 RVEEV------AKILDIHHVLNHFPREL--------SGGQQQRVALARALVKDPSLLLLD 165
Query: 258 EPTNHLDL---DACVWLEEELKTYKRI-LVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
EP ++LD D+ L +E+++ + L+++SH + + + L K KL G
Sbjct: 166 EPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 31/231 (13%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI-FHLTREM-PASDKS 159
+ QD L + G L+G +GSGKST+L++L P I + H R++ P +S
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418
Query: 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAE--ARAANILH 217
+ V +E + L +C E +I DD S+ TAE R A + +
Sbjct: 419 KIGT---VSQEPI--------LFSCSIAE------NIAYGADDPSSVTAEEIQRVAEVAN 461
Query: 218 GLGFTKEMQQ-------KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVW 270
+ F + Q +K SGG + RIA+ARAL P +LLLDE T+ LD +
Sbjct: 462 AVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYL 521
Query: 271 LEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319
++E L R +++I+H + + LD+ K+ YG + E K
Sbjct: 522 VQEALDRLMDGRTVLVIAHRLSTIKN-ANMVAVLDQGKITEYGKHEELLSK 571
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 36/225 (16%)
Query: 403 QNVSFRYS--DDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460
+NV F Y + P I+++ I + ALVGP+G+GKST+L+L+ P+ G +
Sbjct: 345 KNVHFAYPARPEVP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISL 403
Query: 461 NSH---------LRFARYHQHLHELLDLDISPLDYMLQSF--PEVKDREEMRKII----- 504
+ H LR ++ E + S + + P EE++++
Sbjct: 404 DGHDIRQLNPVWLR-SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANA 462
Query: 505 ---------GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
G + G + V LS GQK R+ A + P +LLLDE T+ LD E
Sbjct: 463 VAFIRNFPQGFNTVVGEKGVL----LSGGQKQRIAIARALLKNPKILLLDEATSALDAEN 518
Query: 556 IDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTKW 598
+ +A++ G +++++H I A + + + GK+T++
Sbjct: 519 EYLVQEALDRLMDGRTVLVIAHRLSTIKN-ANMVAVLDQGKITEY 562
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 28/222 (12%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG--- 456
I+V+NVS + N+ I+ R ++GP+GAGK+T + +I G PS G
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 457 ----MVRKNSHLRFARYHQHLHELLDL-----------DIS-PLDYMLQSFPEVKDR-EE 499
+V N L + + + +I+ PL M S E++ R EE
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 500 MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559
+ KI+ + + P R+LS Q+ RV A + P LLLLDEP ++LD D+
Sbjct: 124 VAKILDIHHVLNH---FP-RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 560 ADAINDFEG----GLVLVSHDFRLINQVAEEIWICENGKVTK 597
+ + + L++VSHD I +A+ + + GK+ +
Sbjct: 180 RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ 221
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 112/238 (47%), Gaps = 36/238 (15%)
Query: 90 IANFSITFHGCEL--LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+ N S F ++ L + + + G R+G+LG +G+GK+T + ++ +VP +
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL--- 62
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLE----KLAEQLVACEDDESQEQLM-----DIYD 198
+ + AS+ ++ ++ ++ + L L A E+ M +I
Sbjct: 63 YFDDRLVASNGK---LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 199 RLDDISADTAEARAANILHGLG-FTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
R++++ A+ +I H L F +E+ SG + R+ALARAL P LLLLD
Sbjct: 120 RVEEV------AKILDIHHVLNHFPREL--------SGAQQQRVALARALVKDPSLLLLD 165
Query: 258 EPTNHLDL---DACVWLEEELKTYKRI-LVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
EP ++LD D+ L +E+++ + L+++SH + + + L K KL G
Sbjct: 166 EPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 109/504 (21%), Positives = 206/504 (40%), Gaps = 97/504 (19%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVP--VPDHIDIFHLTREMPASDKSALTCVMEVDEE 170
G G++G NG+GKST + +L + +P D+ + R ++ ++ E
Sbjct: 47 GXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEI 106
Query: 171 RVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKT 230
R ++ Q V + +++++ + D+ +A + + + +++
Sbjct: 107 RPVVKP---QYVDLIPKAVKGKVIELLKKADETGKLEEVVKALEL-------ENVLEREI 156
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD-------ACVWLEEELKTYKRILV 283
+ SGG R+A+A AL DEP+++LD+ A L EE K+ ++
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKS----VL 212
Query: 284 IISHSQDFLNGVCTNIIHLDKRKLKYYG--GNYEAFCKTRLELLENQMKQY--NWEQDQI 339
++ H L+ ++IIH+ YG G Y F + + N + ++ + +D+
Sbjct: 213 VVEHDLAVLD-YLSDIIHV------VYGEPGVYGIFSQPKG--TRNGINEFLRGYLKDEN 263
Query: 340 AHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLXXXXXXXXXXXXXXPSCGKIPPPV 399
+ Y +F K + + + +TL P
Sbjct: 264 VRFRPYEIKF----TKTGERVEIERETLVTY---------------------------PR 292
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
++ SFR + I + GI VGPNG GK+T + + G P+ G +
Sbjct: 293 LVKDYGSFRLEVEPGEIKKGEVIGI--------VGPNGIGKTTFVKXLAGVEEPTEGKIE 344
Query: 460 KNSHLRF------ARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR 512
+ + + A Y ++ELL +D S L+ + E+ K +G L R
Sbjct: 345 WDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFY-------KTELLKPLGIIDLYDR 397
Query: 513 QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EG 568
+ + +LS G+ RV A + + LLDEP+ +LD+E A++ AI E
Sbjct: 398 E----VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEK 453
Query: 569 GLVLVSHDFRLINQVAEEIWICEN 592
++V HD I+ V++ + + E
Sbjct: 454 TALVVEHDVLXIDYVSDRLXVFEG 477
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 17/232 (7%)
Query: 97 FHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI----FHLTR- 151
+ G E+L+ L+ G ++G +GSGKST L + E P I + +L R
Sbjct: 16 YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRD 75
Query: 152 ---EMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTA 208
++ +DK+ L + R RL + + E +M+ ++ +S A
Sbjct: 76 KDGQLKVADKNQLRLL------RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDA 129
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD---L 265
RA L +G + Q K SGG + R+++ARAL ++P +LL DEPT+ LD +
Sbjct: 130 RERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 189
Query: 266 DACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
+ + ++L + +V+++H F V +++I L + K++ G + F
Sbjct: 190 GEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 497 REEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETI 556
RE K + + G+ R Q LS GQ+ RV A P +LL DEPT+ LD E +
Sbjct: 130 RERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 189
Query: 557 DALADAINDF--EG-GLVLVSHDFRLINQVAEEIWICENGKV 595
+ + EG +V+V+H+ V+ + GK+
Sbjct: 190 GEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 20/218 (9%)
Query: 88 VKIANFSITFH----GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143
+K++N + FH + L + L + G+ YG++G +G+GKSTL+ + E P
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 144 IDIFHLTREMPASDKSALTCVMEVDEERVRLE-KLAEQLVACEDDESQEQLMDIYDRLDD 202
+ + D LT + E + + R + + Q + + + LD+
Sbjct: 62 VLV----------DGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 111
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
D + R +L +G + + SGG + R+A+ARAL P +LL DE T+
Sbjct: 112 TPKDEVKRRVTELLSLVGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 263 LDLDACVWLEEELKTYKR----ILVIISHSQDFLNGVC 296
LD + E LK R +++I+H D + +C
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC 208
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 40/199 (20%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMV---------RKNSHLRFARYH-----QHLHEL 476
++G +GAGKSTL+ + P+ G V S L AR QH + L
Sbjct: 35 GVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 94
Query: 477 ------------LDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDG 524
L+LD +P D EVK R + +++ GL + P LS G
Sbjct: 95 SSRTVFGNVALPLELDNTPKD-------EVKRR--VTELLSLVGLGDKHDSYP-SNLSGG 144
Query: 525 QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGL----VLVSHDFRLI 580
QK RV A P +LL DE T+ LD T ++ + + D L +L++H+ ++
Sbjct: 145 QKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV 204
Query: 581 NQVAEEIWICENGKVTKWE 599
++ + + + NG++ + +
Sbjct: 205 KRICDCVAVISNGELIEQD 223
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 23/169 (13%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
++++NV+ + + G + +++ F I+ LA+ G GAGK++LL +I G+L PS G ++
Sbjct: 19 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 78
Query: 460 KNSHLRFARYHQ-----HLHELLDLDISPLDYMLQSFPEV--------KDREEMRKIIGR 506
+ + F + E + +S +Y +S + K E+ ++G
Sbjct: 79 HSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 138
Query: 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
G+T LS GQ+ R+ A ++ L LLD P +LD+ T
Sbjct: 139 GGIT----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 177
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 74/177 (41%), Gaps = 43/177 (24%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLA-VLGNREVPVPDHIDIFHLTRE----- 152
G +L+D ++ G+ + G G+GK++LL ++G E P I H R
Sbjct: 32 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGRISFCSQ 88
Query: 153 ----MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTA 208
MP + K + + DE R R + AC+ +E DIS
Sbjct: 89 FSWIMPGTIKENIIFGVSYDEYRYR-----SVIKACQLEE-------------DISKF-- 128
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
A NI+ G G SGG R RI+LARA+Y L LLD P +LD+
Sbjct: 129 -AEKDNIVLGEGGI---------TLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 175
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 23/169 (13%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
++++NV+ + + G + +++ F I+ LA+ G GAGK++LL +I G+L PS G ++
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
Query: 460 KNSHLRFARYHQ-----HLHELLDLDISPLDYMLQSFPEV--------KDREEMRKIIGR 506
+ + F + E + +S +Y +S + K E+ ++G
Sbjct: 67 HSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 126
Query: 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
G+T LS GQ+ R+ A ++ L LLD P +LD+ T
Sbjct: 127 GGIT----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 74/177 (41%), Gaps = 43/177 (24%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLA-VLGNREVPVPDHIDIFHLTRE----- 152
G +L+D ++ G+ + G G+GK++LL ++G E P I H R
Sbjct: 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGRISFCSQ 76
Query: 153 ----MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTA 208
MP + K + + DE R R + AC+ +E DIS
Sbjct: 77 FSWIMPGTIKENIIFGVSYDEYRYR-----SVIKACQLEE-------------DISKF-- 116
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
A NI+ G G SGG R RI+LARA+Y L LLD P +LD+
Sbjct: 117 -AEKDNIVLGEGGIT---------LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 20/218 (9%)
Query: 88 VKIANFSITFH----GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143
+K++N + FH + L + L + G+ YG++G +G+GKSTL+ + E P
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 144 IDIFHLTREMPASDKSALTCVMEVDEERVRLE-KLAEQLVACEDDESQEQLMDIYDRLDD 202
+ + D LT + E + + R + + Q + + + LD+
Sbjct: 85 VLV----------DGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 134
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
D + R +L +G + + SGG + R+A+ARAL P +LL D+ T+
Sbjct: 135 TPKDEVKRRVTELLSLVGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 263 LDLDACVWLEEELKTYKR----ILVIISHSQDFLNGVC 296
LD + E LK R +++I+H D + +C
Sbjct: 194 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC 231
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 40/199 (20%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMV---------RKNSHLRFARYH-----QHLHEL 476
++G +GAGKSTL+ + P+ G V S L AR QH + L
Sbjct: 58 GVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 117
Query: 477 ------------LDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDG 524
L+LD +P D EVK R + +++ GL + P LS G
Sbjct: 118 SSRTVFGNVALPLELDNTPKD-------EVKRR--VTELLSLVGLGDKHDSYP-SNLSGG 167
Query: 525 QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGL----VLVSHDFRLI 580
QK RV A P +LL D+ T+ LD T ++ + + D L +L++H+ ++
Sbjct: 168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV 227
Query: 581 NQVAEEIWICENGKVTKWE 599
++ + + + NG++ + +
Sbjct: 228 KRICDCVAVISNGELIEQD 246
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 27/236 (11%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG-M 457
++ V+ +++ YSD G + + I A++G NG GKSTL G L PS G +
Sbjct: 7 ILKVEELNYNYSD-GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 458 VRKNSHLRFARYH-QHLHELLDLDISPLDYMLQS---------------FPEVKDREEMR 501
+ N + ++R L E + + D L S PE + R+ +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 502 KIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD----METID 557
+ R G+ + P LS GQK RV A + P +L+LDEPT LD E +
Sbjct: 126 NALKRTGIEHLKD-KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK 184
Query: 558 ALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGN---ILDYKETLR 610
L + + +++ +HD ++ + +++ + G+V +GN + KE +R
Sbjct: 185 LLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFAEKEVIR 239
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 104/258 (40%), Gaps = 40/258 (15%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK 158
G L+ + + G +LG NG GKSTL + + S
Sbjct: 20 GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQ----------------NFNGILKPSSG 63
Query: 159 SALTCVMEVDEERVRLEKLAEQL-VACEDDESQEQLMDIYDRLD------DISADTAEAR 211
L +D R + KL E + + +D ++Q +Y + + D R
Sbjct: 64 RILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKR 123
Query: 212 AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD------- 264
N L G + ++ K T S G + R+A+A L ++P +L+LDEPT LD
Sbjct: 124 VDNALKRTGI-EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEI 182
Query: 265 LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLEL 324
+ V +++EL ++I +H D + C N+ + + ++ G E F + +
Sbjct: 183 MKLLVEMQKELGI---TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEV-- 237
Query: 325 LENQMKQYNWEQDQIAHM 342
+++ N +I H+
Sbjct: 238 ----IRKVNLRLPRIGHL 251
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 97/237 (40%), Gaps = 13/237 (5%)
Query: 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146
+VK+ N F ++D LE+ G LLG +G GK+T L + E P I I
Sbjct: 6 EVKLINIWKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYI 65
Query: 147 FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISAD 206
P +K E D V Q A + + +L +
Sbjct: 66 EDNLVADP--EKGVFVPPKERDVAXVF------QSYALYPHXTVYDNIAFPLKLRKVPKQ 117
Query: 207 TAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266
+ R + LG T E+ +K ++ SGG R R+AL RA+ +P + L DEP ++LD
Sbjct: 118 EIDKRVREVAEXLGLT-ELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
Query: 267 ACVWLEEELKTYKRIL----VIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319
V ELK +R L + ++H Q I +K +L+ G E + K
Sbjct: 177 LRVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYK 233
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 23/143 (16%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLR-------------------FARYH 470
L L+GP+G GK+T L I G P+ G + +L F Y
Sbjct: 35 LVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQSYA 94
Query: 471 QHLHELLDLDIS-PLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRV 529
+ H + +I+ PL L+ P+ + + +R++ GLT P R+LS GQ+ RV
Sbjct: 95 LYPHXTVYDNIAFPLK--LRKVPKQEIDKRVREVAEXLGLTELLNRKP-RELSGGQRQRV 151
Query: 530 VFAYLAWQAPHLLLLDEPTNHLD 552
+ P + L DEP ++LD
Sbjct: 152 ALGRAIIRRPKVFLXDEPLSNLD 174
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 22/168 (13%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
++++NV+ + + G + +++ F I+ LA+ G GAGK++LL +I G+L PS G ++
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
Query: 460 KNSHLRF-ARYHQHLHELLDLDISPLDYMLQSFPEV-----------KDREEMRKIIGRY 507
+ + F +++ + + +I + Y + V K E+ ++G
Sbjct: 67 HSGRISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 126
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
G+T LS GQ+ R+ A ++ L LLD P +LD+ T
Sbjct: 127 GIT----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 164
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 74/177 (41%), Gaps = 44/177 (24%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLA-VLGNREVPVPDHIDIFHLTRE----- 152
G +L+D ++ G+ + G G+GK++LL ++G E P I H R
Sbjct: 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGRISFCSQ 76
Query: 153 ----MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTA 208
MP + K + V DE R R + AC+ +E DIS
Sbjct: 77 FSWIMPGTIKENIIGV-SYDEYRYR-----SVIKACQLEE-------------DISKF-- 115
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
A NI+ G G SGG R RI+LARA+Y L LLD P +LD+
Sbjct: 116 -AEKDNIVLGEGGIT---------LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 162
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 20/218 (9%)
Query: 88 VKIANFSITFH----GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143
+K++N + FH + L + L + G+ YG++G +G+GKSTL+ + E P
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 144 IDIFHLTREMPASDKSALTCVMEVDEERVRLE-KLAEQLVACEDDESQEQLMDIYDRLDD 202
+ + D LT + E + + R + Q + + + LD+
Sbjct: 85 VLV----------DGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDN 134
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
D + R +L +G + + SGG + R+A+ARAL P +LL D+ T+
Sbjct: 135 TPKDEVKRRVTELLSLVGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 263 LDLDACVWLEEELKTYKR----ILVIISHSQDFLNGVC 296
LD + E LK R +++I+H D + +C
Sbjct: 194 LDPATTRSILELLKDINRRLGLTILLITHEXDVVKRIC 231
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 40/199 (20%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMV---------RKNSHLRFARYH-----QHLHEL 476
++G +GAGKSTL+ + P+ G V S L AR QH + L
Sbjct: 58 GVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLL 117
Query: 477 ------------LDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDG 524
L+LD +P D EVK R + +++ GL + P LS G
Sbjct: 118 SSRTVFGNVALPLELDNTPKD-------EVKRR--VTELLSLVGLGDKHDSYP-SNLSGG 167
Query: 525 QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGL----VLVSHDFRLI 580
QK RV A P +LL D+ T+ LD T ++ + + D L +L++H+ ++
Sbjct: 168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVV 227
Query: 581 NQVAEEIWICENGKVTKWE 599
++ + + + NG++ + +
Sbjct: 228 KRICDCVAVISNGELIEQD 246
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 25/237 (10%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI--- 144
+++ N F + + E+ G LLG +G GK+T L +L P I
Sbjct: 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD 63
Query: 145 DIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDIS 204
D+ L ++P + R + Q A + + + R IS
Sbjct: 64 DV--LVNDIPP---------------KYREVGMVFQNYALYPHMTVFENIAFPLRARRIS 106
Query: 205 ADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
D E R I L + +K T+ SGG + R+ALARAL +P +LL DEP ++LD
Sbjct: 107 KDEVEKRVVEIARKLLIDNLLDRKPTQ-LSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
Query: 265 LDACVWLEEELKTYKRIL----VIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
+ + + E+K ++ L V ++H Q + + I ++ KL YG E +
Sbjct: 166 ANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVY 222
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 21/187 (11%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-------------KNSHLRFARYHQHLHEL 476
+AL+GP+G GK+T L ++ G P+ G + + + F Y + H
Sbjct: 32 VALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMT 91
Query: 477 LDLDISPLDYMLQSFPEVKDREEMRKI-IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535
+ +I+ + L++ KD E R + I R L QLS GQ+ RV A
Sbjct: 92 VFENIA---FPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARAL 148
Query: 536 WQAPHLLLLDEPTNHLDMETIDALADAINDFEGGL----VLVSHDFRLINQVAEEIWICE 591
+ P +LL DEP ++LD + I + L V V+HD +A I +
Sbjct: 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFN 208
Query: 592 NGKVTKW 598
GK+ ++
Sbjct: 209 QGKLVQY 215
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 27/213 (12%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
V++ + F +++ LE+ G LLG +G GK+T L ++ E P I I
Sbjct: 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI- 62
Query: 148 HLTREMPASDKSALTCVMEVDEER-VRLEKLAEQLVACEDDESQEQLMDIYD------RL 200
DK + D E+ + + + + M +YD +L
Sbjct: 63 --------GDK------LVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKL 108
Query: 201 DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260
+ + R + LG T E+ +K ++ SGG R R+AL RA+ KP + L+DEP
Sbjct: 109 RKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPL 167
Query: 261 NHLDLDACVWLEEELKTYKRIL----VIISHSQ 289
++LD V + ELK +R L + ++H Q
Sbjct: 168 SNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ 200
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 23/143 (16%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-------------------KNSHLRFARYH 470
+ L+GP+G GK+T L +I G PS G + ++ + F Y
Sbjct: 32 MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91
Query: 471 QHLHELLDLDIS-PLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRV 529
+ H + +I+ PL L+ P + + +R++ GLT P R+LS GQ+ RV
Sbjct: 92 LYPHMTVYDNIAFPLK--LRKVPRQEIDQRVREVAELLGLTELLNRKP-RELSGGQRQRV 148
Query: 530 VFAYLAWQAPHLLLLDEPTNHLD 552
+ P + L+DEP ++LD
Sbjct: 149 ALGRAIVRKPQVFLMDEPLSNLD 171
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 99/199 (49%), Gaps = 19/199 (9%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG---------- 449
I + +VSFRY +G ++ +++ + +VG NG+GK+TLL ++ G
Sbjct: 12 IELNSVSFRY--NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFL 69
Query: 450 DLTPS-VGMVRKNSHLRFAR-YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRY 507
D +P+ ++RKN F Q + ++ D++ + E + R+ ++K++
Sbjct: 70 DGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVA-FSLEIMGLDESEMRKRIKKVLELV 128
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD---METIDALADAIN 564
GL+G P+ LS GQK R+ A + + L LDEP + LD I + +++
Sbjct: 129 GLSGLAAADPL-NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLK 187
Query: 565 DFEGGLVLVSHDFRLINQV 583
+ G++LV+H+ ++ +
Sbjct: 188 NEGKGIILVTHELEYLDDM 206
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 115/254 (45%), Gaps = 25/254 (9%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+++ + S ++G +L+D E G+ Y ++G NGSGK+TLL +L +
Sbjct: 12 IELNSVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG----------LL 61
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
E+ A ++ + V + + Q++ +E D+ L+ + D
Sbjct: 62 AAAGEIFLDGSPADPFLLRKNVGYV-FQNPSSQIIGATVEE------DVAFSLEIMGLDE 114
Query: 208 AEARA--ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
+E R +L +G + + + SGG + R+A+A L L LDEP + LD
Sbjct: 115 SEMRKRIKKVLELVGLSG-LAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDP 173
Query: 266 DA---CVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRL 322
+ + E LK + +++++H ++L+ + I+H+ + + G++E F +
Sbjct: 174 PSQREIFQVLESLKNEGKGIILVTHELEYLDDM-DFILHISNGTIDFC-GSWEEFVEREF 231
Query: 323 ELLENQMKQYNWEQ 336
+ +E K W++
Sbjct: 232 DDVEIPFKWKLWKK 245
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 97/231 (41%), Gaps = 43/231 (18%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG- 456
PV +++ Y + ++ I +A++GPNGAGKSTLL L+ G L+PS G
Sbjct: 8 PVALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGE 67
Query: 457 ---------------------MVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495
++R+ S L F + E++ + +P + +
Sbjct: 68 CHLLGQNLNSWQPKALARTRAVMRQYSELAFPF---SVSEVIQMGRAP-------YGGSQ 117
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYL---AWQ---APHLLLLDEPTN 549
DR+ +++++ + Q R LS G++ RV A + WQ P L LDEPT+
Sbjct: 118 DRQALQQVMAQTDCLALAQR-DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTS 176
Query: 550 HLDM----ETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVT 596
LD+ T+ L + V HD L A+ I + GK+
Sbjct: 177 ALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV 227
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 66/170 (38%), Gaps = 21/170 (12%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
L+ D L + G ++G NG+GKSTLL +L P H + L + + + AL
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL--SPSHGECHLLGQNLNSWQPKAL 83
Query: 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGF 221
R + + +E E + Y D A + L
Sbjct: 84 A------RTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL----- 132
Query: 222 TKEMQQKKTKDFSGGWRMRIALARAL------YVKPHLLLLDEPTNHLDL 265
+ Q+ + SGG + R+ LAR L P L LDEPT+ LDL
Sbjct: 133 --ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDL 180
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 33/190 (17%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQS 490
L+GP GAGKS L LI G + P G VR N A E + P DY L
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG----ADITPLPPERRGIGFVPQDYAL-- 81
Query: 491 FPEVK-------------------DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVF 531
FP + EM + +G L R+ P R LS G++ RV
Sbjct: 82 FPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK---PAR-LSGGERQRVAL 137
Query: 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAI----NDFEGGLVLVSHDFRLINQVAEEI 587
A P LLLLDEP + +D++T L + + +F+ ++ V+HD +A+E+
Sbjct: 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEV 197
Query: 588 WICENGKVTK 597
+ NG++ +
Sbjct: 198 AVMLNGRIVE 207
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR 280
+K SGG R R+ALARAL ++P LLLLDEP + +DL L EEL+ +R
Sbjct: 122 RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 28/221 (12%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +N+ FRY D P I N+ I + +VG +G+GKSTL LI P G V
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 460 KNSH-LRFA-------RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTG 511
+ H L A + L + + L+ S +D + + P + + K+I L G
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM----SVEKVIYAAKLAG 117
Query: 512 RQQ-VCPIRQ------------LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA 558
+ +R+ LS GQ+ R+ A P +L+ DE T+ LD E+
Sbjct: 118 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177
Query: 559 LADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTK 597
+ ++ G +++++H + A+ I + E GK+ +
Sbjct: 178 IMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVE 217
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 29/197 (14%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
+L + L + G G++G +GSGKSTL ++ + +P++ + ++ +D + L
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 75
Query: 162 T-CVMEVDEERVRLEK-LAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL 219
V V ++ V L + + + + S E++ IY AA +
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV--IY--------------AAKLAGAH 119
Query: 220 GFTKEMQQ-------KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA-CVWL 271
F E+++ ++ SGG R RIA+ARAL P +L+ DE T+ LD ++ V +
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 272 EEELKTYK-RILVIISH 287
K K R ++II+H
Sbjct: 180 RNMHKICKGRTVIIIAH 196
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 28/221 (12%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +N+ FRY D P I N+ I + +VG +G+GKSTL LI P G V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 460 KNSH-LRFA-------RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTG 511
+ H L A + L + + L+ S +D + + P + + K+I L G
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM----SVEKVIYAAKLAG 123
Query: 512 RQQ-VCPIRQ------------LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA 558
+ +R+ LS GQ+ R+ A P +L+ DE T+ LD E+
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 559 LADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTK 597
+ ++ G +++++H + A+ I + E GK+ +
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVE 223
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 29/197 (14%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
+L + L + G G++G +GSGKSTL ++ + +P++ + ++ +D + L
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 162 T-CVMEVDEERVRLEK-LAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL 219
V V ++ V L + + + + S E++ IY AA +
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV--IY--------------AAKLAGAH 125
Query: 220 GFTKEMQQ-------KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA-CVWL 271
F E+++ ++ SGG R RIA+ARAL P +L+ DE T+ LD ++ V +
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 272 EEELKTYK-RILVIISH 287
K K R ++II+H
Sbjct: 186 RNMHKICKGRTVIIIAH 202
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 28/221 (12%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +N+ FRY D P I N+ I + +VG +G+GKSTL LI P G V
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 460 KNSH-LRFA-------RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTG 511
+ H L A + L + + L+ S +D + + P + + K+I L G
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM----SVEKVIYAAKLAG 119
Query: 512 RQQ-VCPIRQ------------LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA 558
+ +R+ LS GQ+ R+ A P +L+ DE T+ LD E+
Sbjct: 120 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 559 LADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTK 597
+ ++ G +++++H + A+ I + E GK+ +
Sbjct: 180 IMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVE 219
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 29/197 (14%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
+L + L + G G++G +GSGKSTL ++ + +P++ + ++ +D + L
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 77
Query: 162 T-CVMEVDEERVRLEK-LAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL 219
V V ++ V L + + + + S E++ IY AA +
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV--IY--------------AAKLAGAH 121
Query: 220 GFTKEMQQ-------KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA-CVWL 271
F E+++ ++ SGG R RIA+ARAL P +L+ DE T+ LD ++ V +
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 272 EEELKTYK-RILVIISH 287
K K R ++II+H
Sbjct: 182 RNMHKICKGRTVIIIAH 198
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 15/176 (8%)
Query: 92 NFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTR 151
N G E+L+ L + G ++G +GSGKSTLL +LG + P + F +
Sbjct: 9 NIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV--FLEGK 66
Query: 152 EMPASDKSALTCVMEVDEERV-RLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEA 210
E+ +++ L+ + V + L +L A E+ + + + EA
Sbjct: 67 EVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALEN---------VIVPMLKMGKPKKEA 117
Query: 211 --RAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
R +L LG ++ +K + SGG + R+A+ARAL +P LL DEPT +LD
Sbjct: 118 KERGEYLLSELGLGDKLS-RKPYELSGGEQQRVAIARALANEPILLFADEPTGNLD 172
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 27/207 (13%)
Query: 413 GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV-------------- 458
G I + + + ++++G +G+GKSTLL ++ P+ G V
Sbjct: 16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKE 75
Query: 459 ---RKNSHLRFA-RYHQHLHELLDLD--ISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR 512
+N L F ++H + EL L+ I P+ M + E K+R E ++ GL +
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEY--LLSELGLGDK 133
Query: 513 QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALAD---AINDFEGG 569
P +LS G++ RV A P LL DEPT +LD + D IN+
Sbjct: 134 LSRKPY-ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTS 192
Query: 570 LVLVSHDFRLINQVAEEIWICENGKVT 596
+V+V+H+ R + ++ ++GKV
Sbjct: 193 IVMVTHE-RELAELTHRTLEMKDGKVV 218
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 96/201 (47%), Gaps = 29/201 (14%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLL---NLIY----GDLT----------PSVGMVRKN 461
GI++ R + ++GP+G+GKST L NL+ G++ ++ VR+
Sbjct: 21 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 80
Query: 462 SHLRFARYH--QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
+ F R++ H+ L ++ ++P+ ++ +P K + +++ + GL + P
Sbjct: 81 VGMVFQRFNLFPHMTVLNNITLAPMK--VRKWPREKAEAKAMELLDKVGLKDKAHAYP-D 137
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EG-GLVLVSHD 576
LS GQ RV A P ++L DEPT+ LD E + + + EG +V+V+H+
Sbjct: 138 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 197
Query: 577 FRLINQVAEEIWICENGKVTK 597
+V + + + G + +
Sbjct: 198 MGFAREVGDRVLFMDGGYIIE 218
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD- 264
+ AEA+A +L +G K+ SGG R+A+ARAL ++P ++L DEPT+ LD
Sbjct: 113 EKAEAKAMELLDKVGL-KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP 171
Query: 265 --LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLD 303
+ + + ++L +V+++H F V ++ +D
Sbjct: 172 EMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMD 212
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 96/201 (47%), Gaps = 29/201 (14%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLL---NLIY----GDLT----------PSVGMVRKN 461
GI++ R + ++GP+G+GKST L NL+ G++ ++ VR+
Sbjct: 42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101
Query: 462 SHLRFARYH--QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
+ F R++ H+ L ++ ++P+ ++ +P K + +++ + GL + P
Sbjct: 102 VGMVFQRFNLFPHMTVLNNITLAPMK--VRKWPREKAEAKAMELLDKVGLKDKAHAYP-D 158
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EG-GLVLVSHD 576
LS GQ RV A P ++L DEPT+ LD E + + + EG +V+V+H+
Sbjct: 159 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218
Query: 577 FRLINQVAEEIWICENGKVTK 597
+V + + + G + +
Sbjct: 219 MGFAREVGDRVLFMDGGYIIE 239
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD- 264
+ AEA+A +L +G K+ SGG R+A+ARAL ++P ++L DEPT+ LD
Sbjct: 134 EKAEAKAMELLDKVGL-KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP 192
Query: 265 --LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLD 303
+ + + ++L +V+++H F V ++ +D
Sbjct: 193 EMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMD 233
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 21/222 (9%)
Query: 76 TGSLAVHPKSRDVKIANFSITFHG---CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAV 132
+GSLA VK + S + ++LQ L G+ L+G NGSGKST+ A+
Sbjct: 5 SGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL 64
Query: 133 LGNREVPVPDHIDIFHLTREMPASDKSAL-TCVMEVDEERVRLEKLAEQLVACEDDESQE 191
L N P + + + D L T V V +E + + + +A +
Sbjct: 65 LQNLYQPTGGKVLLD--GEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRT-- 120
Query: 192 QLMDIYDRLDDISADTAEARAANILHGL--GFTKEMQQKKTKDFSGGWRMRIALARALYV 249
+++I+A E+ A + + G G+ E+ + + SGG R +ALARAL
Sbjct: 121 ------PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIR 173
Query: 250 KPHLLLLDEPTNHLD----LDACVWLEEELKTYKRILVIISH 287
KP LL+LD+ T+ LD L L E + R +++I+H
Sbjct: 174 KPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITH 215
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 25/187 (13%)
Query: 390 PSCGKIPP----PVIMVQNVSFRYSD-DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLL 444
P G + P ++ Q+VSF Y + + + L F + ALVGPNG+GKST+
Sbjct: 3 PLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA 62
Query: 445 NLIYGDLTPSVGMVRKNSHLRFARYHQHLH-ELLDLDISPLDYMLQSFPE--------VK 495
L+ P+ G V + H +LH ++ + PL + +SF E
Sbjct: 63 ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTP 121
Query: 496 DREEMRKIIGRYG----LTGRQQVCPIR------QLSDGQKCRVVFAYLAWQAPHLLLLD 545
EE+ + G ++G Q QLS GQ+ V A + P LL+LD
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 546 EPTNHLD 552
+ T+ LD
Sbjct: 182 QATSALD 188
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 28/221 (12%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +N+ FRY D P I N+ I + +VG G+GKSTL LI P G V
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 460 KNSH-LRFA-------RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTG 511
+ H L A + L + + L+ S +D + + P + + K+I L G
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM----SVEKVIYAAKLAG 119
Query: 512 RQQ-VCPIRQ------------LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA 558
+ +R+ LS GQ+ R+ A P +L+ DE T+ LD E+
Sbjct: 120 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 559 LADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTK 597
+ ++ G +++++H + A+ I + E GK+ +
Sbjct: 180 IMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVE 219
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 29/197 (14%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
+L + L + G G++G GSGKSTL ++ + +P++ + ++ +D + L
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 77
Query: 162 T-CVMEVDEERVRLEK-LAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL 219
V V ++ V L + + + + S E++ IY AA +
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV--IY--------------AAKLAGAH 121
Query: 220 GFTKEMQQ-------KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA-CVWL 271
F E+++ ++ SGG R RIA+ARAL P +L+ DE T+ LD ++ V +
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 272 EEELKTYK-RILVIISH 287
K K R ++II+H
Sbjct: 182 RNMHKICKGRTVIIIAH 198
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
E+L+ E+ G +GL+G NG+GK+T L ++ P + +F
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF------------G 76
Query: 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEA--RAANILHG 218
V E E R + L E+ A + + E L + S++ E RA I G
Sbjct: 77 KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEI-AG 135
Query: 219 LGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
LG E + + +S G ++ +ARAL V P L +LDEPT+ LD+
Sbjct: 136 LG---EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDV 179
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 32/224 (14%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFAR-YHQHLH 474
I + + F I+ L+GPNGAGK+T L +I + PS G+V F + + H
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV-----FGKNVVEEPH 84
Query: 475 ELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLT-----------------GRQQVCP 517
E+ L IS L ++ ++ E +R + G Y + G +
Sbjct: 85 EVRKL-ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDR 143
Query: 518 IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM----ETIDALADAINDFEGGLVLV 573
+ S G +++ A P L +LDEPT+ LD+ E L A EG +LV
Sbjct: 144 VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILV 201
Query: 574 -SHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVLKE 616
SH+ + + + I + NG + + G + + KE +A+ ++E
Sbjct: 202 SSHNMLEVEFLCDRIALIHNGTIVET-GTVEELKERYKAQNIEE 244
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 28/221 (12%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +N+ FRY D P I N+ I + +VG +G+GKSTL LI P G V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 460 KNSH-LRFA-------RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTG 511
+ H L A + L + + L+ S +D + + P + + K+I L G
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM----SVEKVIYAAKLAG 123
Query: 512 RQQ-VCPIRQ------------LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA 558
+ +R+ LS GQ+ R+ A P +L+ D+ T+ LD E+
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHV 183
Query: 559 LADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTK 597
+ ++ G +++++H + A+ I + E GK+ +
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVE 223
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 93/197 (47%), Gaps = 29/197 (14%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
+L + L + G G++G +GSGKSTL ++ + +P++ + ++ +D + L
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 162 T-CVMEVDEERVRLEK-LAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL 219
V V ++ V L + + + + S E++ IY AA +
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV--IY--------------AAKLAGAH 125
Query: 220 GFTKEMQQ-------KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA-CVWL 271
F E+++ ++ SGG R RIA+ARAL P +L+ D+ T+ LD ++ V +
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 272 EEELKTYK-RILVIISH 287
K K R ++II+H
Sbjct: 186 RNMHKICKGRTVIIIAH 202
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 18/193 (9%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
+LQ L G L+G NGSGKST+ A+L N P + + + +P + L
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLD--GKPLPQYEHRYL 89
Query: 162 -TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL- 219
V V +E Q+ E+ + +++I+A ++ A + + GL
Sbjct: 90 HRQVAAVGQE--------PQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLP 141
Query: 220 -GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL--- 275
G+ E+ + ++ SGG R +ALARAL KP +L+LD+ T+ LD ++ + +E+ L
Sbjct: 142 QGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYES 200
Query: 276 -KTYKRILVIISH 287
+ Y R +++I+
Sbjct: 201 PERYSRSVLLITQ 213
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 93/230 (40%), Gaps = 44/230 (19%)
Query: 399 VIMVQNVSFRYSD-DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
++ Q+VSF Y + + + L F + ALVGPNG+GKST+ L+ P+ G
Sbjct: 14 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 73
Query: 458 VRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCP 517
+ + H++LH + + P+V R I YGLT + +
Sbjct: 74 LLLDGKPLPQYEHRYLHRQVA--------AVGQEPQVFGRSLQENIA--YGLTQKPTMEE 123
Query: 518 I----------------------------RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
I QLS GQ+ V A + P +L+LD+ T+
Sbjct: 124 ITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATS 183
Query: 550 HLD----METIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
LD ++ L ++ + ++L++ L+ Q A+ I E G +
Sbjct: 184 ALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHILFLEGGAI 232
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 43/237 (18%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF--HLTREMPAS 156
G ++ ++ G GLLG +GSGK+T+L ++ E P + I +T P
Sbjct: 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK 86
Query: 157 DKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD------RLDDISADTAEA 210
L + + Q M +YD R + D +A
Sbjct: 87 RNVGLVF----------------------QNYALFQHMTVYDNVSFGLREKRVPKDEMDA 124
Query: 211 RAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVW 270
R +L + + + + SGG + R+ALARAL +P +LL DEP +D
Sbjct: 125 RVRELLRFMRL-ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ---- 179
Query: 271 LEEELKTYKRIL--------VIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319
+ EL+T+ R + V ++H Q+ V ++ L + ++ +G E + K
Sbjct: 180 IRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 23/231 (9%)
Query: 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV-------------RKNSHL 464
R + F I + L+GP+G+GK+T+L LI G P+ G V ++N L
Sbjct: 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGL 91
Query: 465 RFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDG 524
F Y H + ++S + P+ + +R+++ L P +LS G
Sbjct: 92 VFQNYALFQHMTVYDNVS-FGLREKRVPKDEMDARVRELLRFMRLESYANRFP-HELSGG 149
Query: 525 QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGL--VLVSHDFRLI 580
Q+ RV A P +LL DEP +D + L + E G+ V V+HD
Sbjct: 150 QQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA 209
Query: 581 NQVAEEIWICENGKVTKWEGNILDYKET---LRAKVLKEKNK-SAAVSNGK 627
+VA+ + + G V ++ Y++ A + E N + AV NG+
Sbjct: 210 LEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASFIGESNVWTRAVQNGR 260
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 23/156 (14%)
Query: 413 GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQ- 471
G + +++ F I+ LA+ G GAGK++LL +I G+L PS G ++ + + F
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 109
Query: 472 ----HLHELLDLDISPLDYMLQSFPEV--------KDREEMRKIIGRYGLTGRQQVCPIR 519
+ E + +S +Y +S + K E+ ++G G+T
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT--------- 160
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
LS+GQ+ ++ A ++ L LLD P +LD+ T
Sbjct: 161 -LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLT 195
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 43/177 (24%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLA-VLGNREVPVPDHIDIFHLTRE----- 152
G +L+D ++ G+ + G G+GK++LL ++G E P I H R
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGRISFCSQ 106
Query: 153 ----MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTA 208
MP + K + + DE R R + AC+ +E DIS
Sbjct: 107 FSWIMPGTIKENIIFGVSYDEYRYR-----SVIKACQLEE-------------DISKF-- 146
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
A NI+ G G S G + +I+LARA+Y L LLD P +LD+
Sbjct: 147 -AEKDNIVLGEGGIT---------LSEGQQAKISLARAVYKDADLYLLDSPFGYLDV 193
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 49/231 (21%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY----------- 448
I +NV F Y+D G +++ F + LALVGP+GAGKST+L L++
Sbjct: 54 IEFENVHFSYAD-GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR 112
Query: 449 -----------GDLTPSVGMVRKNS---------HLRFARYHQHLHEL-LDLDISPLDYM 487
L +G+V +++ ++R+ R E+ + +
Sbjct: 113 IDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172
Query: 488 LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP 547
+ +FP E R +G GL +LS G+K RV A +AP ++LLDE
Sbjct: 173 IMAFP-----EGYRTQVGERGL----------KLSGGEKQRVAIARTILKAPGIILLDEA 217
Query: 548 TNHLDMETIDALADAINDFEGGLVLVSHDFRLINQV-AEEIWICENGKVTK 597
T+ LD A+ ++ + RL V A++I + ++G + +
Sbjct: 218 TSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVE 268
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 35/203 (17%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD---HIDIFHLTREMPA 155
G E LQD + G+ L+G +G+GKST+L +L R + ID +++ A
Sbjct: 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL-FRFYDISSGCIRIDGQDISQVTQA 124
Query: 156 SDKSALTCVMEVDEERVRLEKLAEQL----VACEDDESQEQLMDIYDRLDDISADTAEAR 211
S +S + V + + + + +A+ + V +DE + A A+
Sbjct: 125 SLRSHIGVVPQ--DTVLFNDTIADNIRYGRVTAGNDEVE-----------------AAAQ 165
Query: 212 AANILHGL-----GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266
AA I + G+ ++ ++ K SGG + R+A+AR + P ++LLDE T+ LD
Sbjct: 166 AAGIHDAIMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224
Query: 267 ACVWLEEELKTY--KRILVIISH 287
++ L R ++++H
Sbjct: 225 NERAIQASLAKVCANRTTIVVAH 247
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 23/156 (14%)
Query: 413 GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQ- 471
G + +++ F I+ LA+ G GAGK++LL +I G+L PS G ++ + + F
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 109
Query: 472 ----HLHELLDLDISPLDYMLQSFPEV--------KDREEMRKIIGRYGLTGRQQVCPIR 519
+ E + +S +Y +S + K E+ ++G G+T
Sbjct: 110 IMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT--------- 160
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
LS GQ+ R+ A ++ L LLD P +LD+ T
Sbjct: 161 -LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 195
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 80/188 (42%), Gaps = 45/188 (23%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLA-VLGNREVPVPDHIDI 146
+ +NFS+ G +L+D ++ G+ + G G+GK++LL ++G E P I
Sbjct: 41 LSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKI 95
Query: 147 FHLTRE---------MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIY 197
H R MP + K + + DE R R + AC+ +E
Sbjct: 96 KHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYR-----SVIKACQLEE--------- 141
Query: 198 DRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
DIS A NI+ G G SGG R RI+LARA+Y L LLD
Sbjct: 142 ----DISKF---AEKDNIVLGEGGIT---------LSGGQRARISLARAVYKDADLYLLD 185
Query: 258 EPTNHLDL 265
P +LD+
Sbjct: 186 SPFGYLDV 193
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 24/166 (14%)
Query: 404 NVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462
NVSF + G + +N+ I+ LA+ G G+GK++LL LI G+L S G+++ +
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 463 HLRFARYHQ-----HLHELLDLDISPLDYMLQSFPE--------VKDREEMRKIIGRYGL 509
+ F + E + +S +Y +S + K E+ ++G G+
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 510 TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
T LS GQ+ R+ A ++ L LLD P +LD+ T
Sbjct: 160 T----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 195
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 41/184 (22%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLA-VLGNREVP--VPDHIDIFHLTRE--- 152
G +L++ L + G + G GSGK++LL +LG E + H +
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 153 -MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEAR 211
MP + K + + DE R + + AC+ + DI T A
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYK-----SVVKACQLQQ-------------DI---TKFAE 148
Query: 212 AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWL 271
N + G G SGG R RI+LARA+Y L LLD P +LD V+
Sbjct: 149 QDNTVLGEGGVT---------LSGGQRARISLARAVYKDADLYLLDSPFGYLD----VFT 195
Query: 272 EEEL 275
EE++
Sbjct: 196 EEQV 199
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 24/166 (14%)
Query: 404 NVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462
NVSF + G + +N+ I+ LA+ G G+GK++LL LI G+L S G+++ +
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 463 HLRFARYHQ-----HLHELLDLDISPLDYMLQSFPE--------VKDREEMRKIIGRYGL 509
+ F + E + +S +Y +S + K E+ ++G G+
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 510 TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
T LS GQ+ R+ A ++ L LLD P +LD+ T
Sbjct: 160 T----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 195
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 41/184 (22%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLA-VLGNREVP--VPDHIDIFHLTRE--- 152
G +L++ L + G + G GSGK++LL +LG E + H +
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 153 -MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEAR 211
MP + K + + DE R + + AC+ + DI T A
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYK-----SVVKACQLQQ-------------DI---TKFAE 148
Query: 212 AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWL 271
N + G G SGG R RI+LARA+Y L LLD P +LD V+
Sbjct: 149 QDNTVLGEGGVT---------LSGGQRARISLARAVYKDADLYLLDSPFGYLD----VFT 195
Query: 272 EEEL 275
EE++
Sbjct: 196 EEQV 199
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 26/220 (11%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +N+ FRY D P I N+ I + +VG +G+GKSTL LI P G V
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 460 KNSH-LRFA-------RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTG 511
+ H L A + L + + L+ S +D + + P + + K+I L G
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM----SVEKVIYAAKLAG 117
Query: 512 RQQ-VCPIRQ------------LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA 558
+ +R+ LS GQ+ R+ A P +L+ DE T+ LD E+
Sbjct: 118 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177
Query: 559 LADAINDFEGGLVLVSHDFRLIN-QVAEEIWICENGKVTK 597
+ ++ G ++ RL + A+ I + E GK+ +
Sbjct: 178 IMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVE 217
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 27/175 (15%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
+L + L + G G++G +GSGKSTL ++ + +P++ + ++ +D + L
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 75
Query: 162 T-CVMEVDEERVRLEK-LAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL 219
V V ++ V L + + + + S E++ IY AA +
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV--IY--------------AAKLAGAH 119
Query: 220 GFTKEMQQ-------KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
F E+++ ++ SGG R RIA+ARAL P +L+ DE T+ LD ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 174
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 26/220 (11%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +N+ FRY D P I N+ I + +VG +G+GKSTL LI P G V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 460 KNSH-LRFA-------RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTG 511
+ H L A + L + + L+ S +D + + P + + K+I L G
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM----SVEKVIYAAKLAG 123
Query: 512 RQQ-VCPIRQ------------LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA 558
+ +R+ LS GQ+ R+ A P +L+ DE T+ LD E+
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 559 LADAINDFEGGLVLVSHDFRLIN-QVAEEIWICENGKVTK 597
+ ++ G ++ RL + A+ I + E GK+ +
Sbjct: 184 IMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVE 223
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 27/175 (15%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
+L + L + G G++G +GSGKSTL ++ + +P++ + ++ +D + L
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 162 T-CVMEVDEERVRLEK-LAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL 219
V V ++ V L + + + + S E++ IY AA +
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV--IY--------------AAKLAGAH 125
Query: 220 GFTKEMQQ-------KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
F E+++ ++ SGG R RIA+ARAL P +L+ DE T+ LD ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 22/155 (14%)
Query: 413 GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRF-ARYHQ 471
G + +++ F I+ LA+ G GAGK++LL +I G+L PS G ++ + + F +++
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 109
Query: 472 HLHELLDLDISPLDYMLQSFPEV-----------KDREEMRKIIGRYGLTGRQQVCPIRQ 520
+ + +I + Y + V K E+ ++G G+T
Sbjct: 110 IMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT---------- 159
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
LS+GQ+ ++ A ++ L LLD P +LD+ T
Sbjct: 160 LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLT 194
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 73/177 (41%), Gaps = 44/177 (24%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDIFHLTR------ 151
G +L+D ++ G+ + G G+GK++LL ++G E P I H R
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGRISFCSQ 106
Query: 152 ---EMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTA 208
MP + K + V DE R R + AC+ +E DIS
Sbjct: 107 FSWIMPGTIKENIIGV-SYDEYRYR-----SVIKACQLEE-------------DISKF-- 145
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
A NI+ G G S G + +I+LARA+Y L LLD P +LD+
Sbjct: 146 -AEKDNIVLGEGGIT---------LSEGQQAKISLARAVYKDADLYLLDSPFGYLDV 192
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 110/250 (44%), Gaps = 43/250 (17%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI-------YGDL 451
++ ++V F Y DD I R++ F ++ +A GP+G GKST+ +L+ G++
Sbjct: 1 MLSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 452 T---------------PSVGMVRKNSHLRFARYHQHLHELLDLDISPLDY-------MLQ 489
T +G V ++S + ++L L+ D + D +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 490 SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
SF E +++ +G G+ ++S GQ+ R+ A + P +L+LDE T
Sbjct: 120 SFVE-NMPDQLNTEVGERGV----------KISGGQRQRLAIARAFLRNPKILMLDEATA 168
Query: 550 HLDMETIDALADAINDFEGGLVLVSHDFRLINQV-AEEIWICENGKVT-KWEGNILDYKE 607
LD E+ + A++ G + RL V A++I+ E G++T + N L
Sbjct: 169 SLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228
Query: 608 TLRAKVLKEK 617
L AK + E+
Sbjct: 229 PLYAKYVSEQ 238
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 20/194 (10%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF-----HLTREMPA 155
++L+D E G +G GKST+ ++L P I I +++ E
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWR 75
Query: 156 SDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANI 215
S ++ + +R E L L DE Q++D+ A + N+
Sbjct: 76 SQIGFVSQDSAIMAGTIR-ENLTYGLEGDYTDEDLWQVLDLA---------FARSFVENM 125
Query: 216 LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL 275
L E+ ++ K SGG R R+A+ARA P +L+LDE T LD ++ +++ L
Sbjct: 126 PDQL--NTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 276 KTY--KRILVIISH 287
+ R ++I+H
Sbjct: 183 DSLMKGRTTLVIAH 196
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 17/195 (8%)
Query: 76 TGSLAVHPKSRDVKIANFSITFHG---CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAV 132
+GSLA VK + S + ++LQ L G+ L+G NGSGKST+ A+
Sbjct: 5 SGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL 64
Query: 133 LGNREVPVPDHIDIFHLTREMPASDKSAL-TCVMEVDEERVRLEKLAEQLVACEDDESQE 191
L N P + + + D L T V V +E + + + +A +
Sbjct: 65 LQNLYQPTGGKVLLD--GEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRT-- 120
Query: 192 QLMDIYDRLDDISADTAEARAANILHGL--GFTKEMQQKKTKDFSGGWRMRIALARALYV 249
+++I+A E+ A + + G G+ E+ + + SGG R +ALARAL
Sbjct: 121 ------PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIR 173
Query: 250 KPHLLLLDEPTNHLD 264
KP LL+LD T+ LD
Sbjct: 174 KPRLLILDNATSALD 188
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 25/187 (13%)
Query: 390 PSCGKIPP----PVIMVQNVSFRYSD-DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLL 444
P G + P ++ Q+VSF Y + + + L F + ALVGPNG+GKST+
Sbjct: 3 PLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA 62
Query: 445 NLIYGDLTPSVGMVRKNSHLRFARYHQHLH-ELLDLDISPLDYMLQSFPE--------VK 495
L+ P+ G V + H +LH ++ + PL + +SF E
Sbjct: 63 ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTP 121
Query: 496 DREEMRKIIGRYG----LTGRQQVCPIR------QLSDGQKCRVVFAYLAWQAPHLLLLD 545
EE+ + G ++G Q QLS GQ+ V A + P LL+LD
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 546 EPTNHLD 552
T+ LD
Sbjct: 182 NATSALD 188
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 107/230 (46%), Gaps = 50/230 (21%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI-------------- 447
+ +VSF+Y+D+ I +++ I+ +A VG +G GKSTL+NLI
Sbjct: 342 IDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILID 401
Query: 448 --------YGDLTPSVGMVRKNSHLRFARYHQHL---------HELLD-LDISPLDYMLQ 489
G L +G+V++++ L +++ E+++ ++ +
Sbjct: 402 GHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIM 461
Query: 490 SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
+ P+ D E +G G+ +LS GQK R+ A + P +L+LDE T+
Sbjct: 462 NLPQGYDTE-----VGERGV----------KLSGGQKQRLSIARIFLNNPPILILDEATS 506
Query: 550 HLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597
LD+E+ + +A++ + ++V+H I A++I + ENG + +
Sbjct: 507 ALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVE 555
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 108/236 (45%), Gaps = 26/236 (11%)
Query: 76 TGSLAVHPKSRDVKIANFSITFHGCE--LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
G+ + K + I + S ++ E +L+D L + G +G++G GKSTL+ ++
Sbjct: 328 VGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLI 387
Query: 134 GNREVPVPDH---IDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQ 190
R V ID ++ + S ++ + V + + + + + E ++ +
Sbjct: 388 P-RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQ--DNILFSDTVKENILLGRPTATD 444
Query: 191 EQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVK 250
E++++ +A A A + G+ E+ ++ K SGG + R+++AR
Sbjct: 445 EEVVE--------AAKMANAHDFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNN 495
Query: 251 PHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVIISHSQDFLNGVCTNIIHLDK 304
P +L+LDE T+ LDL++ ++E L R +I++H + I H DK
Sbjct: 496 PPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHR-------LSTITHADK 544
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 33/224 (14%)
Query: 400 IMVQNVSFRYSD--DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY-------GD 450
I V+NV F Y D P I R + ++ +ALVG +G GKST+++L+ G
Sbjct: 416 ITVENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGK 474
Query: 451 LTPSVGMVRKNSHLRFARYHQHL-HELLDLDISPLDYMLQSFPEVKDREEM--------- 500
+T G+ ++ +L F R + + + L ++ + E REEM
Sbjct: 475 ITID-GVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANA 533
Query: 501 RKII-----GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
K I G L G + QLS GQK R+ A + P +LLLDE T+ LD E+
Sbjct: 534 EKFIKTLPNGYNTLVGDRGT----QLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 589
Query: 556 IDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTK 597
+ A++ G ++++H I A+ I C+NG+V +
Sbjct: 590 EGIVQQALDKAAKGRTTIIIAHRLSTIRN-ADLIISCKNGQVVE 632
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 32/214 (14%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
E+L+ + G+ L+G +G GKST++A+L + I I D S
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFI----------DGSE 1142
Query: 161 LTCVMEVDEERVRLEKLAEQ--LVACEDDESQEQLMDIYDRLDDISADTAE----ARAAN 214
+ + + R ++ ++++ L C E +I LD S A+ AR AN
Sbjct: 1143 IKT-LNPEHTRSQIAIVSQEPTLFDCSIAE------NIIYGLDPSSVTMAQVEEAARLAN 1195
Query: 215 ILHGL-----GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACV 269
I + + GF + + T+ SGG + RIA+ARAL P +LLLDE T+ LD ++
Sbjct: 1196 IHNFIAELPEGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEK 1254
Query: 270 WLEEELKTYK--RILVIISHS-QDFLNGVCTNII 300
++E L + R ++I+H +N C ++
Sbjct: 1255 VVQEALDRAREGRTCIVIAHRLNTVMNADCIAVV 1288
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 99/225 (44%), Gaps = 52/225 (23%)
Query: 87 DVKIANFSITFHG---CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL--------GN 135
D+ + N T+ +L+ L +N G+ L+G +G GKST++++L G
Sbjct: 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGK 474
Query: 136 REVPVPDHIDIFHLTRE-------MPASDKSALTCVMEVDEERVRLEKLA----EQLVAC 184
+ D +D+ + E + + + + C +E E + L K E + AC
Sbjct: 475 ITI---DGVDVRDINLEFLRKNVAVVSQEPALFNCTIE---ENISLGKEGITREEMVAAC 528
Query: 185 EDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244
+ +++ + + + + + D + SGG + RIA+A
Sbjct: 529 KMANAEKFIKTLPNGYNTLVGD----------------------RGTQLSGGQKQRIAIA 566
Query: 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEEL-KTYK-RILVIISH 287
RAL P +LLLDE T+ LD ++ +++ L K K R +II+H
Sbjct: 567 RALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAH 611
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 91/248 (36%), Gaps = 83/248 (33%)
Query: 400 IMVQNVSFRYSDDGPW-IYRNLEFGIDLDTRLALVGPNGAGKSTLL-------------- 444
++ +NV F Y + I + L F ++ LALVGP+G GKST++
Sbjct: 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI 1136
Query: 445 -----------------------------------NLIYGDLTPSVGMVRKNSHLRFARY 469
N+IYG SV M + R A
Sbjct: 1137 FIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANI 1196
Query: 470 HQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRV 529
H + EL PE + R G G Q LS GQK R+
Sbjct: 1197 HNFIAEL---------------PEGFET--------RVGDRGTQ-------LSGGQKQRI 1226
Query: 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEI 587
A + P +LLLDE T+ LD E+ + +A++ G ++++H + A+ I
Sbjct: 1227 AIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCI 1285
Query: 588 WICENGKV 595
+ NG +
Sbjct: 1286 AVVSNGTI 1293
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 24/166 (14%)
Query: 404 NVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462
NVSF + G + +N+ I+ LA+ G G+GK++LL LI G+L S G+++ +
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 463 HLRFARYHQ-----HLHELLDLDISPLDYMLQSFPE--------VKDREEMRKIIGRYGL 509
+ F + E + +S +Y +S + K E+ ++G G+
Sbjct: 100 RVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 510 TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
T LS GQ+ R+ A ++ L LLD P +LD+ T
Sbjct: 160 T----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 195
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 41/184 (22%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLA-VLGNREVP--VPDHIDIFHLTRE--- 152
G +L++ L + G + G GSGK++LL +LG E + H +
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 153 -MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEAR 211
MP + K + + DE R + + AC+ + DI T A
Sbjct: 110 IMPGTIKENIISGVSYDEYRYK-----SVVKACQLQQ-------------DI---TKFAE 148
Query: 212 AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWL 271
N + G G SGG R RI+LARA+Y L LLD P +LD V+
Sbjct: 149 QDNTVLGEGGVT---------LSGGQRARISLARAVYKDADLYLLDSPFGYLD----VFT 195
Query: 272 EEEL 275
EE++
Sbjct: 196 EEQV 199
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 24/156 (15%)
Query: 413 GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQ- 471
G + +++ F I+ LA+ G GAGK++LL +I G+L PS G ++ + + F +
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSW 109
Query: 472 ----HLHELLDLDISPLDYMLQSFPEV--------KDREEMRKIIGRYGLTGRQQVCPIR 519
+ E + + +S +Y +S + K E+ ++G G+T
Sbjct: 110 IMPGTIKENI-IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT--------- 159
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
LS GQ+ R+ A ++ L LLD P +LD+ T
Sbjct: 160 -LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 194
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 80/188 (42%), Gaps = 46/188 (24%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLA-VLGNREVPVPDHIDI 146
+ +NFS+ G +L+D ++ G+ + G G+GK++LL ++G E P I
Sbjct: 41 LSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKI 95
Query: 147 FHLTRE---------MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIY 197
H R MP + K + V DE R R + AC+ +E
Sbjct: 96 KHSGRISFCSQNSWIMPGTIKENIIGV-SYDEYRYR-----SVIKACQLEE--------- 140
Query: 198 DRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
DIS A NI+ G G SGG R RI+LARA+Y L LLD
Sbjct: 141 ----DISK---FAEKDNIVLGEGGIT---------LSGGQRARISLARAVYKDADLYLLD 184
Query: 258 EPTNHLDL 265
P +LD+
Sbjct: 185 SPFGYLDV 192
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 35/202 (17%)
Query: 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-------------KNSHLR 465
N+ I +AL+GP+G+GKSTLL I G P+ G + +N L
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV 80
Query: 466 FARYHQHLHEL--------LDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCP 517
F + + H L+L +P + + + EV + K++ RY
Sbjct: 81 FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW-------- 132
Query: 518 IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD----METIDALADAINDFEGGLVLV 573
QLS GQ+ RV A + P +LLLDEP ++LD +E L + V V
Sbjct: 133 --QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYV 190
Query: 574 SHDFRLINQVAEEIWICENGKV 595
+HD +A+ I + G++
Sbjct: 191 THDQAEALAMADRIAVIREGEI 212
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 39/217 (17%)
Query: 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI-- 144
++K+ N F L + L++ G LLG +GSGKSTLL + P I
Sbjct: 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62
Query: 145 DIFHLTREMPASDKS--------ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDI 196
D +T E+P D++ AL M V + +L +E +++ ++
Sbjct: 63 DEKDVT-ELPPKDRNVGLVFQNWALYPHMTVYKNIA----FPLELRKAPREEIDKKVREV 117
Query: 197 YDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLL 256
A +LH ++ + SGG + R+A+ARAL +P +LLL
Sbjct: 118 ----------------AKMLH----IDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLL 157
Query: 257 DEPTNHLDLDACVWLEEELKTYKRIL----VIISHSQ 289
DEP ++LD + + ELK ++ L V ++H Q
Sbjct: 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ 194
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 24/166 (14%)
Query: 404 NVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462
NVSF + G + +N+ I+ LA+ G G+GK++LL LI G+L S G+++ +
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 463 HLRFARYHQ-----HLHELLDLDISPLDYMLQSFPE--------VKDREEMRKIIGRYGL 509
+ F + E + +S +Y +S + K E+ ++G G+
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 510 TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
T LS GQ+ R+ A ++ L LLD P +LD+ T
Sbjct: 160 T----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 195
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 41/184 (22%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLA-VLGNREVP--VPDHIDIFHLTRE--- 152
G +L++ L + G + G GSGK++LL +LG E + H +
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 109
Query: 153 -MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEAR 211
MP + K + + DE R + + AC+ + DI T A
Sbjct: 110 IMPGTIKENIIRGVSYDEYRYK-----SVVKACQLQQ-------------DI---TKFAE 148
Query: 212 AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWL 271
N + G G SGG R RI+LARA+Y L LLD P +LD V+
Sbjct: 149 QDNTVLGEGGVT---------LSGGQRARISLARAVYKDADLYLLDSPFGYLD----VFT 195
Query: 272 EEEL 275
EE++
Sbjct: 196 EEQV 199
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 23/165 (13%)
Query: 404 NVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462
NVSF + G + +N+ I+ LA+ G G+GK++LL LI G+L S G+++ +
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 463 HLRF-ARYHQHLHELLDLDISPLDYMLQSFPEV-----------KDREEMRKIIGRYGLT 510
+ F +++ + + +I + Y + V K E+ ++G G+T
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT 159
Query: 511 GRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
LS GQ+ R+ A ++ L LLD P +LD+ T
Sbjct: 160 ----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL 275
SGG R RI+LARA+Y L LLD P +LD V+ EE++
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLD----VFTEEQV 198
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 24/156 (15%)
Query: 413 GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQ- 471
G + +++ F I+ LA+ G GAGK++LL +I G+L PS G ++ + + F +
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSW 109
Query: 472 ----HLHELLDLDISPLDYMLQSFPEV--------KDREEMRKIIGRYGLTGRQQVCPIR 519
+ E + + +S +Y +S + K E+ ++G G+T
Sbjct: 110 IMPGTIKENI-IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT--------- 159
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
LS GQ+ R+ A ++ L LLD P +LD+ T
Sbjct: 160 -LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 194
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 79/186 (42%), Gaps = 46/186 (24%)
Query: 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLA-VLGNREVPVPDHIDIFH 148
+NFS+ G +L+D ++ G+ + G G+GK++LL ++G E P I H
Sbjct: 43 FSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKH 97
Query: 149 LTRE---------MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDR 199
R MP + K + V DE R R + AC+ +E
Sbjct: 98 SGRISFCSQNSWIMPGTIKENIIGV-SYDEYRYR-----SVIKACQLEE----------- 140
Query: 200 LDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEP 259
DIS A NI+ G G SGG R RI+LARA+Y L LLD P
Sbjct: 141 --DISK---FAEKDNIVLGEGGIT---------LSGGQRARISLARAVYKDADLYLLDSP 186
Query: 260 TNHLDL 265
+LD+
Sbjct: 187 FGYLDV 192
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 104/248 (41%), Gaps = 35/248 (14%)
Query: 84 KSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143
K +VK+ N + F + L + G LLG +G GK+T L ++ E P
Sbjct: 9 KMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 68
Query: 144 I-----DIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD 198
I D+ +L P D++ + Q A + + +
Sbjct: 69 IYFGDRDVTYL----PPKDRNI---------------SMVFQSYAVWPHMTVYENIAFPL 109
Query: 199 RLDDISADTAEAR---AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLL 255
++ D + R AA +L +E+ + SGG R R+A+ARA+ V+P +LL
Sbjct: 110 KIKKFPKDEIDKRVRWAAELLQ----IEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL 165
Query: 256 LDEPTNHLDLDACVWLEEELKTYKRIL----VIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
+DEP ++LD V + E+K ++ L + ++H Q + I +++ +L G
Sbjct: 166 MDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 225
Query: 312 GNYEAFCK 319
E + +
Sbjct: 226 SPTEVYLR 233
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 39/174 (22%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-------------KNSHLRFARYHQHLHEL 476
L L+GP+G GK+T L +I G P+ G + +N + F Y H
Sbjct: 41 LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 100
Query: 477 LDLDIS-PLDYMLQSFP--EVKDRE-------EMRKIIGRYGLTGRQQVCPIRQLSDGQK 526
+ +I+ PL ++ FP E+ R ++ +++ RY QLS GQ+
Sbjct: 101 VYENIAFPLK--IKKFPKDEIDKRVRWAAELLQIEELLNRYP----------AQLSGGQR 148
Query: 527 CRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGL----VLVSHD 576
RV A P +LL+DEP ++LD + A+ I + L + V+HD
Sbjct: 149 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 202
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 104/248 (41%), Gaps = 35/248 (14%)
Query: 84 KSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143
K +VK+ N + F + L + G LLG +G GK+T L ++ E P
Sbjct: 8 KMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 144 I-----DIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD 198
I D+ +L P D++ + Q A + + +
Sbjct: 68 IYFGDRDVTYL----PPKDRNI---------------SMVFQSYAVWPHMTVYENIAFPL 108
Query: 199 RLDDISADTAEAR---AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLL 255
++ D + R AA +L +E+ + SGG R R+A+ARA+ V+P +LL
Sbjct: 109 KIKKFPKDEIDKRVRWAAELLQ----IEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL 164
Query: 256 LDEPTNHLDLDACVWLEEELKTYKRIL----VIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
+DEP ++LD V + E+K ++ L + ++H Q + I +++ +L G
Sbjct: 165 MDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224
Query: 312 GNYEAFCK 319
E + +
Sbjct: 225 SPTEVYLR 232
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 39/174 (22%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-------------KNSHLRFARYHQHLHEL 476
L L+GP+G GK+T L +I G P+ G + +N + F Y H
Sbjct: 40 LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 99
Query: 477 LDLDIS-PLDYMLQSFP--EVKDRE-------EMRKIIGRYGLTGRQQVCPIRQLSDGQK 526
+ +I+ PL ++ FP E+ R ++ +++ RY QLS GQ+
Sbjct: 100 VYENIAFPLK--IKKFPKDEIDKRVRWAAELLQIEELLNRYP----------AQLSGGQR 147
Query: 527 CRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGL----VLVSHD 576
RV A P +LL+DEP ++LD + A+ I + L + V+HD
Sbjct: 148 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 201
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 19/193 (9%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
+LQ LE+ G+ L+G +G GKST++ +L P+ +F +E+ + L
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG--SVFLDGKEIKQLNVQWL 1105
Query: 162 TCVME-VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLG 220
+ V +E + + + +A D+ R+ A+ ANI +
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIAYGDN----------SRVVSYEEIVRAAKEANIHQFID 1155
Query: 221 FTKEMQQKKTKD----FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK 276
+ + D SGG + RIA+ARAL +PH+LLLDE T+ LD ++ ++E L
Sbjct: 1156 SLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215
Query: 277 TYK--RILVIISH 287
+ R ++I+H
Sbjct: 1216 KAREGRTCIVIAH 1228
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDF 577
QLS GQK R+ A + PH+LLLDE T+ LD E+ + +A++ G ++++H
Sbjct: 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRL 1230
Query: 578 RLINQVAEEIWICENGKV 595
I Q A+ I + +NGKV
Sbjct: 1231 STI-QNADLIVVIQNGKV 1247
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 91/193 (47%), Gaps = 17/193 (8%)
Query: 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKS 159
++L+ L++ G+ L+G +G GKST + ++ P+ + I +++ +
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDG--QDIRTINVR 460
Query: 160 ALTCVMEV--DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILH 217
L ++ V E + +AE + +D + +D+I EA A + +
Sbjct: 461 YLREIIGVVSQEPVLFATTIAENIRYGREDVT----------MDEIEKAVKEANAYDFIM 510
Query: 218 GLGFTKE-MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK 276
L + + ++ SGG + RIA+ARAL P +LLLDE T+ LD ++ ++ L
Sbjct: 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD 570
Query: 277 TYK--RILVIISH 287
+ R ++I+H
Sbjct: 571 KAREGRTTIVIAH 583
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 98/233 (42%), Gaps = 31/233 (13%)
Query: 403 QNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461
+N+ F Y S I + L + +ALVG +G GKST + L+ P GMV +
Sbjct: 391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSID 450
Query: 462 SHLRFARYHQHLHELLDL---------------------DISPLDYMLQSFPEVKDREEM 500
++L E++ + D++ +D + ++ E + +
Sbjct: 451 GQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVT-MDEIEKAVKEANAYDFI 509
Query: 501 RKIIGRY-GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559
K+ ++ L G + QLS GQK R+ A + P +LLLDE T+ LD E+ +
Sbjct: 510 MKLPHQFDTLVGERGA----QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVV 565
Query: 560 ADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAK 612
A++ G + RL ++ +G V +GN + E +R K
Sbjct: 566 QAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN---HDELMREK 615
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 19/193 (9%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
+LQ LE+ G+ L+G +G GKST++ +L P+ +F +E+ + L
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG--SVFLDGKEIKQLNVQWL 1105
Query: 162 TCVME-VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLG 220
+ V +E + + + +A D+ R+ A+ ANI +
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIAYGDN----------SRVVSYEEIVRAAKEANIHQFID 1155
Query: 221 FTKEMQQKKTKD----FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK 276
+ + D SGG + RIA+ARAL +PH+LLLDE T+ LD ++ ++E L
Sbjct: 1156 SLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215
Query: 277 TYK--RILVIISH 287
+ R ++I+H
Sbjct: 1216 KAREGRTCIVIAH 1228
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDF 577
QLS GQK R+ A + PH+LLLDE T+ LD E+ + +A++ G ++++H
Sbjct: 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRL 1230
Query: 578 RLINQVAEEIWICENGKV 595
I Q A+ I + +NGKV
Sbjct: 1231 STI-QNADLIVVIQNGKV 1247
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 91/193 (47%), Gaps = 17/193 (8%)
Query: 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKS 159
++L+ L++ G+ L+G +G GKST + ++ P+ + I +++ +
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDG--QDIRTINVR 460
Query: 160 ALTCVMEV--DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILH 217
L ++ V E + +AE + +D + +D+I EA A + +
Sbjct: 461 YLREIIGVVSQEPVLFATTIAENIRYGREDVT----------MDEIEKAVKEANAYDFIM 510
Query: 218 GLGFTKE-MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK 276
L + + ++ SGG + RIA+ARAL P +LLLDE T+ LD ++ ++ L
Sbjct: 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD 570
Query: 277 TYK--RILVIISH 287
+ R ++I+H
Sbjct: 571 KAREGRTTIVIAH 583
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 98/233 (42%), Gaps = 31/233 (13%)
Query: 403 QNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461
+N+ F Y S I + L + +ALVG +G GKST + L+ P GMV +
Sbjct: 391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSID 450
Query: 462 SHLRFARYHQHLHELLDL---------------------DISPLDYMLQSFPEVKDREEM 500
++L E++ + D++ +D + ++ E + +
Sbjct: 451 GQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVT-MDEIEKAVKEANAYDFI 509
Query: 501 RKIIGRY-GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559
K+ ++ L G + QLS GQK R+ A + P +LLLDE T+ LD E+ +
Sbjct: 510 MKLPHQFDTLVGERGA----QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVV 565
Query: 560 ADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAK 612
A++ G + RL ++ +G V +GN + E +R K
Sbjct: 566 QAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN---HDELMREK 615
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 101/228 (44%), Gaps = 47/228 (20%)
Query: 403 QNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI--------------- 447
+NV+F Y RN+ I +ALVG +G+GKST+ +LI
Sbjct: 345 RNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404
Query: 448 -------YGDLTPSVGMVRKNSHL---------RFARYHQHLHELLDLDISPLDYMLQSF 491
L V +V +N HL +AR ++ E ++ + + + Y +
Sbjct: 405 HDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIE-EAARMAYAMDFI 463
Query: 492 PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551
++ + + IIG G+ LS GQ+ R+ A + +L+LDE T+ L
Sbjct: 464 NKMDN--GLDTIIGENGVL----------LSGGQRQRIAIARALLRDSPILILDEATSAL 511
Query: 552 DMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTK 597
D E+ A+ A+++ + ++++H I Q A+EI + E+G + +
Sbjct: 512 DTESERAIQAALDELQKNRTSLVIAHRLSTIEQ-ADEIVVVEDGIIVE 558
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 28/242 (11%)
Query: 57 ALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCEL--LQDTMLELNCGR 114
A C+ L A L++E G + + D++ N + T+ G E+ L++ L++ G+
Sbjct: 313 AACQTLFA--ILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGK 370
Query: 115 RYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRL 174
L+G +GSGKST+ +++ ID H+ M D T ++
Sbjct: 371 TVALVGRSGSGKSTIASLITRFY-----DIDEGHIL--MDGHDLREYTLASLRNQV---- 419
Query: 175 EKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ------- 227
L Q V +D + Y R ++ S + E AA + + + F +M
Sbjct: 420 -ALVSQNVHLFNDTVANNIA--YARTEEYSREQIE-EAARMAYAMDFINKMDNGLDTIIG 475
Query: 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVII 285
+ SGG R RIA+ARAL +L+LDE T+ LD ++ ++ L + R ++I
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI 535
Query: 286 SH 287
+H
Sbjct: 536 AH 537
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 47/228 (20%)
Query: 403 QNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI--------------- 447
+NV+F Y RN+ I +ALVG +G+GKST+ +LI
Sbjct: 345 RNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDG 404
Query: 448 -------YGDLTPSVGMVRKNSHL---------RFARYHQHLHELLDLDISPLDYMLQSF 491
L V +V +N HL +AR Q+ E ++ + + + Y +
Sbjct: 405 HDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIE-EAARMAYAMDFI 463
Query: 492 PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551
++ + + +IG G+ LS GQ+ R+ A + +L+LDE T+ L
Sbjct: 464 NKMDN--GLDTVIGENGVL----------LSGGQRQRIAIARALLRDSPILILDEATSAL 511
Query: 552 DMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTK 597
D E+ A+ A+++ + ++++H I + A+EI + E+G + +
Sbjct: 512 DTESERAIQAALDELQKNRTSLVIAHRLSTIEK-ADEIVVVEDGVIVE 558
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 52/244 (21%)
Query: 68 LNAEARACTGSLAVHPKSRDVKIANFSITFHGCEL--LQDTMLELNCGRRYGLLGLNGSG 125
L++E G + + DV+ N + T+ G ++ L++ L++ G+ L+G +GSG
Sbjct: 322 LDSEQEKDEGKRVIERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSG 381
Query: 126 KSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLE--KLAEQLVA 183
KST+ S +T ++DE + ++ L E +A
Sbjct: 382 KSTI----------------------------ASLITRFYDIDEGEILMDGHDLREYTLA 413
Query: 184 CEDDESQEQLMDIYDRLDDISADTAEAR-----------AANILHGLGFTKEMQQ----- 227
++ +++ D ++ + A AR AA + + + F +M
Sbjct: 414 SLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTV 473
Query: 228 --KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK--RILV 283
+ SGG R RIA+ARAL +L+LDE T+ LD ++ ++ L + R +
Sbjct: 474 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSL 533
Query: 284 IISH 287
+I+H
Sbjct: 534 VIAH 537
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 98/227 (43%), Gaps = 28/227 (12%)
Query: 400 IMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
I ++NV+ Y IY +N+ I +++ GP+G+GKST LN+I P+ G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 458 VR---------KNSHLRFARYHQHLHELLDLDISPLDYMLQS--------FPEVKDREEM 500
V + L R + ++ PL L++ + EE
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 501 RK----IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET- 555
RK + L R QLS GQ+ RV A P ++L DEPT LD +T
Sbjct: 122 RKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTG 181
Query: 556 --IDALADAINDFEG-GLVLVSHDFRLINQVAEEIWICENGKVTKWE 599
I L +N+ +G +V+V+HD + + E I ++G+V + E
Sbjct: 182 EKIXQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYLKDGEVEREE 227
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 27/215 (12%)
Query: 88 VKIANFSITFHGCE----LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143
+K+ N + T+ E L++ L + G + G +GSGKST L ++G + P
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 144 IDIFHL-TREMPASDKSALTCVMEVDEERVRLEKLAEQ------LVACEDDESQEQLMDI 196
+ I ++ T ++ D LT + R ++ + +Q L A E+ E L I
Sbjct: 62 VYIDNIKTNDL---DDDELTKI-----RRDKIGFVFQQFNLIPLLTALENVE----LPLI 109
Query: 197 YDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLL 256
+ S + RA L + K SGG + R+A+ARAL P ++L
Sbjct: 110 FKYRGAXSGEERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILA 169
Query: 257 DEPTNHLDLDACVWLEEELKTYK----RILVIISH 287
DEPT LD + + LK + +V+++H
Sbjct: 170 DEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH 204
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 115/270 (42%), Gaps = 37/270 (13%)
Query: 85 SRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI 144
S + I + ++ +L+ L+++ G + ++G NGSGKSTL A L RE
Sbjct: 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE-----DY 72
Query: 145 DIFHLTREMPASDKSALT-------CVMEVDEERVRLEKLAEQ------LVACEDDESQE 191
++ T E D AL+ + + V + ++ Q L A QE
Sbjct: 73 EVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQE 132
Query: 192 QLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP 251
L D +D D + A + L + + FSGG + R + + ++P
Sbjct: 133 TL-DRFDFQDLMEEKIALLKMPEDL--------LTRSVNVGFSGGEKKRNDILQMAVLEP 183
Query: 252 HLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLK 308
L +LDE + LD+DA + + L+ KR +I++H Q L+ + + +H+ +
Sbjct: 184 ELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRI 243
Query: 309 YYGGNYEAFCKTRLELLENQMKQYNWEQDQ 338
G++ T ++ LE Q Y W +Q
Sbjct: 244 VKSGDF-----TLVKQLEEQ--GYGWLTEQ 266
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG---LVLVSHDF 577
S G+K R +A P L +LDE + LD++ + +AD +N G ++V+H
Sbjct: 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 224
Query: 578 RLINQVAEE-IWICENGKVTK 597
R+++ + + + + G++ K
Sbjct: 225 RILDYIKPDYVHVLYQGRIVK 245
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 96/238 (40%), Gaps = 25/238 (10%)
Query: 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146
V++ N + + + +D L+++ G +G +G GKSTLL ++ E D+
Sbjct: 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG--DL 60
Query: 147 FHLTREM---PASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI 203
F + M P +++ + Q A S + M +L
Sbjct: 61 FIGEKRMNDTPPAERGV---------------GMVFQSYALYPHLSVAENMSFGLKLAGA 105
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
+ R + L + +K K SGG R R+A+ R L +P + LLDEP ++L
Sbjct: 106 KKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 164
Query: 264 DLDACVWLEEEL----KTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
D V + E+ K R ++ ++H Q + I+ LD ++ G E +
Sbjct: 165 DAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 43/226 (19%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG---------- 449
+ +QNV+ + + + +++ I + VGP+G GKSTLL +I G
Sbjct: 4 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 450 -------DLTPS---VGMVRKN----SHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495
D P+ VGMV ++ HL A +++ L L + + + Q +V
Sbjct: 62 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVA---ENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
+ ++ ++ R + LS GQ+ RV P + LLDEP ++LD
Sbjct: 119 EVLQLAHLLDRKP----------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
Query: 556 IDALADAINDFEGGL----VLVSHDFRLINQVAEEIWICENGKVTK 597
+ I+ L + V+HD +A++I + + G+V +
Sbjct: 169 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 96/238 (40%), Gaps = 25/238 (10%)
Query: 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146
V++ N + + + +D L+++ G +G +G GKSTLL ++ E D+
Sbjct: 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG--DL 60
Query: 147 FHLTREM---PASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI 203
F + M P +++ + Q A S + M +L
Sbjct: 61 FIGEKRMNDTPPAERGV---------------GMVFQSYALYPHLSVAENMSFGLKLAGA 105
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
+ R + L + +K K SGG R R+A+ R L +P + LLDEP ++L
Sbjct: 106 KKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 164
Query: 264 DLDACVWLEEEL----KTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
D V + E+ K R ++ ++H Q + I+ LD ++ G E +
Sbjct: 165 DAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 43/226 (19%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG---------- 449
+ +QNV+ + + + +++ I + VGP+G GKSTLL +I G
Sbjct: 4 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 450 -------DLTPS---VGMVRKN----SHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495
D P+ VGMV ++ HL A +++ L L + + + Q +V
Sbjct: 62 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVA---ENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
+ ++ ++ R + LS GQ+ RV P + LLDEP ++LD
Sbjct: 119 EVLQLAHLLDRKP----------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
Query: 556 IDALADAINDFEGGL----VLVSHDFRLINQVAEEIWICENGKVTK 597
+ I+ L + V+HD +A++I + + G+V +
Sbjct: 169 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 116/268 (43%), Gaps = 39/268 (14%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+ I + ++ +L+ L+++ G + ++G NGSGKSTL A L RE ++
Sbjct: 2 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE-----DYEVT 56
Query: 148 HLTREMPASDKSALT-------CVMEVDEERVRLEKLAEQ------LVACEDDESQEQLM 194
T E D AL+ + + V + ++ Q L A QE L
Sbjct: 57 GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETL- 115
Query: 195 DIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTK-DFSGGWRMRIALARALYVKPHL 253
DR D D E + A L +++ + FSGG + R + + ++P L
Sbjct: 116 ---DRFD--FQDLMEEKIAL----LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPEL 166
Query: 254 LLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310
+LDE + LD+DA + + L+ KR +I++H Q L+ + + +H+ +
Sbjct: 167 CILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 226
Query: 311 GGNYEAFCKTRLELLENQMKQYNWEQDQ 338
G++ T ++ LE Q Y W +Q
Sbjct: 227 SGDF-----TLVKQLEEQ--GYGWLTEQ 247
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG---LVLVSHDF 577
S G+K R +A P L +LDE + LD++ + +AD +N G ++V+H
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 205
Query: 578 RLINQVAEE-IWICENGKVTK 597
R+++ + + + + G++ K
Sbjct: 206 RILDYIKPDYVHVLYQGRIVK 226
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-------- 453
V+N+ F Y + ++++ L F ++ LA++G NG GKSTLL+L+ G P
Sbjct: 7 VENLGFYYQAEN-FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY 65
Query: 454 -SVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSF--PEVKDREEMRKIIGRYGLT 510
S+G V + FA + +LD+ + + +F P+ D + + + LT
Sbjct: 66 QSIGFVPQFFSSPFA------YSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT 119
Query: 511 GRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND 565
+ LS GQ+ ++ A L+LLDEPT+ LD+ D + + D
Sbjct: 120 HLAK-REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLID 173
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 32/215 (14%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
L Q +LN G +LG NG GKSTLL +L P+ I+++ +P S
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPF 79
Query: 162 T-CVMEVD--EERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHG 218
V+++ + A+ D + Q +D N+ H
Sbjct: 80 AYSVLDIVLMGRSTHINTFAKP--KSHDYQVAMQALDY----------------LNLTH- 120
Query: 219 LGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL---DACVWLEEEL 275
+ +++ SGG R I +ARA+ + L+LLDEPT+ LDL D + L +L
Sbjct: 121 ------LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDL 174
Query: 276 KTYKRILVII-SHSQDFLNGVCTNIIHLDKRKLKY 309
+ + V+ +H + + + + L+K+ K+
Sbjct: 175 AQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 27/215 (12%)
Query: 88 VKIANFSITFHGCE----LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143
+K+ N + T+ E L++ L + G ++G +GSGKST+L ++G + P
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 144 IDIFHL-TREMPASDKSALTCVMEVDEERVRLEKLAEQ------LVACEDDESQEQLMDI 196
+ I ++ T ++ D LT + R ++ + +Q L A E+ E L I
Sbjct: 62 VYIDNIKTNDL---DDDELTKI-----RRDKIGFVFQQFNLIPLLTALENVE----LPLI 109
Query: 197 YDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLL 256
+ +S + RA L + K SGG + R+A+ARAL P ++L
Sbjct: 110 FKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILA 169
Query: 257 DEPTNHLDLDACVWLEEELKTYK----RILVIISH 287
D+PT LD + + LK + +V+++H
Sbjct: 170 DQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 101/228 (44%), Gaps = 28/228 (12%)
Query: 399 VIMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
+I ++NV+ Y IY +N+ I ++++GP+G+GKST+LN+I P+ G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 457 MVR---------KNSHLRFARYHQHLHELLDLDISPLDYMLQS--------FPEVKDREE 499
V + L R + ++ PL L++ + EE
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 500 MRK----IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
RK + L R QLS GQ+ RV A P ++L D+PT LD +T
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 556 ---IDALADAINDFEG-GLVLVSHDFRLINQVAEEIWICENGKVTKWE 599
I L +N+ +G +V+V+HD + + E I ++G+V + E
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYLKDGEVEREE 227
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 84/188 (44%), Gaps = 27/188 (14%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-------KNSHLRFARYHQHLHELLDLDI- 481
L LVGPNGAGKSTLL + G +T G ++ S + A + +L +
Sbjct: 29 LHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFA 87
Query: 482 SPLDYMLQSFPEVKDREE-MRKIIGRYGL---TGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
+P+ + L K R E + + G L GR QLS G+ RV A + Q
Sbjct: 88 TPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS----TNQLSGGEWQRVRLAAVVLQ 143
Query: 538 -------APHLLLLDEPTNHLDM---ETIDALADAINDFEGGLVLVSHDFRLINQVAEEI 587
A LLLLD+P N LD+ +D + A++ +V+ SHD + A
Sbjct: 144 ITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRA 203
Query: 588 WICENGKV 595
W+ + GK+
Sbjct: 204 WLLKGGKM 211
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%)
Query: 88 VKIANFSITFH-GCEL----LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD 142
+++ N S FH G L L++ L +N G + G GSGKSTLL ++ P
Sbjct: 5 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 64
Query: 143 HIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDD 202
+ ++ R+ + + + E++ E++ DE + + Y D
Sbjct: 65 DV-LYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF--------DEVAFAVKNFYPDRDP 115
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+ + A GL F + + SGG + R+A+A + +P +L+LDEP
Sbjct: 116 VPL----VKKAMEFVGLDF-DSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVG 170
Query: 263 LDLDA---CVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319
LD + + + E+ KT + +++ISH + + ++ L+K K + F
Sbjct: 171 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGK--------KVFDG 222
Query: 320 TRLELLE 326
TR+E LE
Sbjct: 223 TRMEFLE 229
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 22/206 (10%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMV------------RKNSHLRFARYHQHLHELL 477
L + G G+GKSTLL ++ G + P+ G V R+N + F
Sbjct: 38 LLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAER 97
Query: 478 DLDISPLDYMLQSF-PEVKDREEMRKIIGRYGLT--GRQQVCPIRQLSDGQKCRVVFAYL 534
D + + +++F P+ ++K + GL + P LS G+K RV A +
Sbjct: 98 VFD--EVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPF-FLSGGEKRRVAIASV 154
Query: 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDFEG---GLVLVSHDFRLINQVAEEIWICE 591
P +L+LDEP LD E L + ++ ++L+SHD + + + + E
Sbjct: 155 IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLE 214
Query: 592 NGKVTKWEGNILDYKETLRAKVLKEK 617
GK ++G +++ E + K
Sbjct: 215 KGKKV-FDGTRMEFLEKYDPRFFTSK 239
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%)
Query: 88 VKIANFSITFH-GCEL----LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD 142
+++ N S FH G L L++ L +N G + G GSGKSTLL ++ P
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 143 HIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDD 202
+ ++ R+ + + + E++ E++ DE + + Y D
Sbjct: 63 DV-LYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF--------DEVAFAVKNFYPDRDP 113
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+ + A GL F + + SGG + R+A+A + +P +L+LDEP
Sbjct: 114 VPL----VKKAMEFVGLDFDS-FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168
Query: 263 LDLDA---CVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319
LD + + + E+ KT + +++ISH + + ++ L+K K + F
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGK--------KVFDG 220
Query: 320 TRLELLE 326
TR+E LE
Sbjct: 221 TRMEFLE 227
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 22/206 (10%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMV------------RKNSHLRFARYHQHLHELL 477
L + G G+GKSTLL ++ G + P+ G V R+N + F
Sbjct: 36 LLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAER 95
Query: 478 DLDISPLDYMLQSF-PEVKDREEMRKIIGRYGLT--GRQQVCPIRQLSDGQKCRVVFAYL 534
D + + +++F P+ ++K + GL + P LS G+K RV A +
Sbjct: 96 VFD--EVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPF-FLSGGEKRRVAIASV 152
Query: 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDFEG---GLVLVSHDFRLINQVAEEIWICE 591
P +L+LDEP LD E L + ++ ++L+SHD + + + + E
Sbjct: 153 IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLE 212
Query: 592 NGKVTKWEGNILDYKETLRAKVLKEK 617
GK ++G +++ E + K
Sbjct: 213 KGKKV-FDGTRMEFLEKYDPRFFTSK 237
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 27/215 (12%)
Query: 88 VKIANFSITFHGCE----LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143
VK+ N + T+ E L++ L + G ++G +GSGKST+L ++G + P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 144 IDIFHL-TREMPASDKSALTCVMEVDEERVRLEKLAEQ------LVACEDDESQEQLMDI 196
+ I ++ T ++ D LT + R ++ + +Q L A E+ E L I
Sbjct: 62 VYIDNIKTNDL---DDDELTKI-----RRDKIGFVFQQFNLIPLLTALENVE----LPLI 109
Query: 197 YDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLL 256
+ +S + RA L + K SGG + R+A+ARAL P ++L
Sbjct: 110 FKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILA 169
Query: 257 DEPTNHLDLDACVWLEEELKTYK----RILVIISH 287
D+PT LD + + LK + +V+++H
Sbjct: 170 DQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 28/228 (12%)
Query: 399 VIMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
++ ++NV+ Y IY +N+ I ++++GP+G+GKST+LN+I P+ G
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 457 MVR---------KNSHLRFARYHQHLHELLDLDISPLDYMLQS--------FPEVKDREE 499
V + L R + ++ PL L++ + EE
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 500 MRK----IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
RK + L R QLS GQ+ RV A P ++L D+PT LD +T
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKT 180
Query: 556 ---IDALADAINDFEG-GLVLVSHDFRLINQVAEEIWICENGKVTKWE 599
I L +N+ +G +V+V+HD + + E I ++G+V + E
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYLKDGEVEREE 227
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 96/238 (40%), Gaps = 25/238 (10%)
Query: 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146
V++ N + + + +D L+++ G +G +G GKSTLL ++ E D+
Sbjct: 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG--DL 60
Query: 147 FHLTREM---PASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI 203
F + M P +++ + Q A S + M +L
Sbjct: 61 FIGEKRMNDTPPAERGV---------------GMVFQSYALYPHLSVAENMSFGLKLAGA 105
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
+ R + L + +K K SGG R R+A+ R L +P + LLD+P ++L
Sbjct: 106 KKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNL 164
Query: 264 DLDACVWLEEEL----KTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
D V + E+ K R ++ ++H Q + I+ LD ++ G E +
Sbjct: 165 DAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 43/226 (19%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG---------- 449
+ +QNV+ + + + +++ I + VGP+G GKSTLL +I G
Sbjct: 4 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 450 -------DLTPS---VGMVRKN----SHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495
D P+ VGMV ++ HL A +++ L L + + + Q +V
Sbjct: 62 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVA---ENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
+ ++ ++ R + LS GQ+ RV P + LLD+P ++LD
Sbjct: 119 EVLQLAHLLDRKP----------KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAAL 168
Query: 556 IDALADAINDFEGGL----VLVSHDFRLINQVAEEIWICENGKVTK 597
+ I+ L + V+HD +A++I + + G+V +
Sbjct: 169 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 104/229 (45%), Gaps = 51/229 (22%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI---YGDLTPSVGM- 457
V++V+F Y ++ F I +ALVG +G+GKST+ NL Y + S+ +
Sbjct: 344 VKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLD 403
Query: 458 ---VR--KNSHLR--FARYHQHLHELLDLDISPLDY----------------------ML 488
VR K ++LR FA Q++H D + + Y +
Sbjct: 404 GHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFI 463
Query: 489 QSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
++ P+ D +IG G + LS GQ+ RV A + +L+LDE T
Sbjct: 464 ENMPQGLD-----TVIGENGTS----------LSGGQRQRVAIARALLRDAPVLILDEAT 508
Query: 549 NHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKV 595
+ LD E+ A+ A+++ + +++++H I Q A+EI + + G++
Sbjct: 509 SALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQ-ADEILVVDEGEI 556
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 37/215 (17%)
Query: 87 DVKIANFSITFHGCE--LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI 144
+V + + + T+ G E L + G+ L+G +GSGKST+ A L R V
Sbjct: 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTI-ANLFTRFYDVDSGS 399
Query: 145 DIF--HLTREMPASDKSALTCVMEVDEERVRL--EKLAEQLV-ACEDDESQEQLMDIYDR 199
H R+ ++ L + + V L + +A + A E + ++EQ+
Sbjct: 400 ICLDGHDVRDYKLTN---LRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQI------ 450
Query: 200 LDDISADTAEARAANILHGLGFTKEMQQ-------KKTKDFSGGWRMRIALARALYVKPH 252
+AA H + F + M Q + SGG R R+A+ARAL
Sbjct: 451 ----------EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAP 500
Query: 253 LLLLDEPTNHLDLDACVWLE---EELKTYKRILVI 284
+L+LDE T+ LD ++ ++ +EL+ K +LVI
Sbjct: 501 VLILDEATSALDTESERAIQAALDELQKNKTVLVI 535
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 17/195 (8%)
Query: 76 TGSLAVHPKSRDVKIANFSITFHG---CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAV 132
+GSLA VK + S + ++LQ L G+ L+G NGSGKST+ A+
Sbjct: 5 SGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL 64
Query: 133 LGNREVPVPDHIDIFHLTREMPASDKSAL-TCVMEVDEERVRLEKLAEQLVACEDDESQE 191
L N P + + + D L T V V +E + + + +A +
Sbjct: 65 LQNLYQPTGGKVLLD--GEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRT-- 120
Query: 192 QLMDIYDRLDDISADTAEARAANILHGL--GFTKEMQQKKTKDFSGGWRMRIALARALYV 249
+++I+A E+ A + + G G+ E+ + + + G R +ALARAL
Sbjct: 121 ------PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ-LAVGQRQAVALARALIR 173
Query: 250 KPHLLLLDEPTNHLD 264
KP LL+LD T+ LD
Sbjct: 174 KPRLLILDNATSALD 188
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 25/187 (13%)
Query: 390 PSCGKIPP----PVIMVQNVSFRYSD-DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLL 444
P G + P ++ Q+VSF Y + + + L F + ALVGPNG+GKST+
Sbjct: 3 PLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA 62
Query: 445 NLIYGDLTPSVGMVRKNSHLRFARYHQHLH-ELLDLDISPLDYMLQSFPE--------VK 495
L+ P+ G V + H +LH ++ + PL + +SF E
Sbjct: 63 ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTP 121
Query: 496 DREEMRKIIGRYG----LTGRQQVCPIR------QLSDGQKCRVVFAYLAWQAPHLLLLD 545
EE+ + G ++G Q QL+ GQ+ V A + P LL+LD
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILD 181
Query: 546 EPTNHLD 552
T+ LD
Sbjct: 182 NATSALD 188
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 11/173 (6%)
Query: 98 HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPAS- 156
G +L+ ++ G ++ L GLNG+GK+TLL +L E +++F + P
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFG---KXPGKV 88
Query: 157 DKSALTCVMEVD-EERVRLEKLAE-QLVACEDDESQEQLMDIYDRLDDISADTAEARAAN 214
SA T + LEK E + V + + +Y +DD A
Sbjct: 89 GYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDD----EIRNEAHQ 144
Query: 215 ILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
+L +G + + QQ S G + R+ +ARAL +P +L+LDEP LD A
Sbjct: 145 LLKLVGXSAKAQQY-IGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIA 196
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 23/163 (14%)
Query: 413 GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI-------------YGDLTPSVGMVR 459
G I + + + I + L G NGAGK+TLLN++ +G VG
Sbjct: 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSA 92
Query: 460 KN--SHLRFARY-----HQHLHELLDLDISPLDYMLQSFPEVKD--REEMRKIIGRYGLT 510
+ H+ F + Q ++D+ IS + + ++ D R E +++ G +
Sbjct: 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXS 152
Query: 511 GRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM 553
+ Q I LS G+K RV A P +L+LDEP LD
Sbjct: 153 AKAQQY-IGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDF 194
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 80/187 (42%), Gaps = 27/187 (14%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-------KNSHLRFARYHQHLHELLDLDI- 481
L LVGPNGAGKSTLL G T G ++ S + A + +L +
Sbjct: 29 LHLVGPNGAGKSTLLARXAGX-TSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFA 87
Query: 482 SPLDYMLQSFPEVKDREEM-RKIIGRYGL---TGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
+P+ + L K R E+ + G L GR QLS G+ RV A + Q
Sbjct: 88 TPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS----TNQLSGGEWQRVRLAAVVLQ 143
Query: 538 -------APHLLLLDEPTNHLDM---ETIDALADAINDFEGGLVLVSHDFRLINQVAEEI 587
A LLLLDEP N LD+ +D + A++ +V SHD + A
Sbjct: 144 ITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSHDLNHTLRHAHRA 203
Query: 588 WICENGK 594
W+ + GK
Sbjct: 204 WLLKGGK 210
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 78/192 (40%), Gaps = 29/192 (15%)
Query: 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL-TCVMEV 167
E+ G L+G NG+GKSTLLA I E ++ K AL +
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARXAG-XTSGKGSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ 227
+ + L + D+++ +L++ D ++ D R+ N L G
Sbjct: 81 QQTPPFATPVWHYLTLHQHDKTRTELLN--DVAGALALDDKLGRSTNQLSG--------- 129
Query: 228 KKTKDFSGGW-RMRIALARALYVKPH------LLLLDEPTNHLDLDACVWLEEELKTY-K 279
G W R+R+A A L + P LLLLDEP N LD+ L++ L +
Sbjct: 130 -------GEWQRVRLA-AVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQ 181
Query: 280 RILVIISHSQDF 291
+ L I+ S D
Sbjct: 182 QGLAIVXSSHDL 193
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 81/187 (43%), Gaps = 27/187 (14%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-------KNSHLRFARYHQHLHELLDLDI- 481
L LVGPNGAGKSTLL G T G ++ S + A + +L +
Sbjct: 29 LHLVGPNGAGKSTLLARXAGX-TSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFA 87
Query: 482 SPLDYMLQSFPEVKDREEM-RKIIGRYGL---TGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
+P+ + L K R E+ + G L GR QLS G+ RV A + Q
Sbjct: 88 TPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS----TNQLSGGEWQRVRLAAVVLQ 143
Query: 538 -------APHLLLLDEPTNHLDMETIDALADAINDF-EGGLVLV--SHDFRLINQVAEEI 587
A LLLLDEP N LD+ AL ++ + GL +V SHD + A
Sbjct: 144 ITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSHDLNHTLRHAHRA 203
Query: 588 WICENGK 594
W+ + GK
Sbjct: 204 WLLKGGK 210
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 78/192 (40%), Gaps = 29/192 (15%)
Query: 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL-TCVMEV 167
E+ G L+G NG+GKSTLLA I E ++ K AL +
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARXAG-XTSGKGSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ 227
+ + L + D+++ +L++ D ++ D R+ N L G
Sbjct: 81 QQTPPFATPVWHYLTLHQHDKTRTELLN--DVAGALALDDKLGRSTNQLSG--------- 129
Query: 228 KKTKDFSGGW-RMRIALARALYVKPH------LLLLDEPTNHLDLDACVWLEEELKTY-K 279
G W R+R+A A L + P LLLLDEP N LD+ L++ L +
Sbjct: 130 -------GEWQRVRLA-AVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQ 181
Query: 280 RILVIISHSQDF 291
+ L I+ S D
Sbjct: 182 QGLAIVXSSHDL 193
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 83/188 (44%), Gaps = 27/188 (14%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-------KNSHLRFARYHQHLHELLDLDI- 481
L LVGPNGAGKSTLL + G +T G ++ S + A + +L +
Sbjct: 29 LHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFA 87
Query: 482 SPLDYMLQSFPEVKDREE-MRKIIGRYGL---TGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
+P+ + L K R E + + G L GR QLS G+ RV A + Q
Sbjct: 88 TPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS----TNQLSGGEWQRVRLAAVVLQ 143
Query: 538 -------APHLLLLDEPTNHLDM---ETIDALADAINDFEGGLVLVSHDFRLINQVAEEI 587
A LLLLD+P LD+ +D + A++ +V+ SHD + A
Sbjct: 144 ITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRA 203
Query: 588 WICENGKV 595
W+ + GK+
Sbjct: 204 WLLKGGKM 211
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 92/195 (47%), Gaps = 10/195 (5%)
Query: 399 VIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
+I ++NV S G + N+ ++ ++ ++GPNG+GK+TLL I G L S
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGN 59
Query: 457 MVRKNSHLR----FARYHQHLHELLDLDISPLDYMLQSFPEVK--DREEMRKIIGRYGLT 510
+ +R + RY +L E ++ ++ D ++ + E+K DR+ +++ L
Sbjct: 60 IFINGMEVRKIRNYIRYSTNLPEAYEIGVTVND-IVYLYEELKGLDRDLFLEMLKALKLG 118
Query: 511 GRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGL 570
+ +LS GQ V + P ++ LDEP ++D ++ I ++
Sbjct: 119 EEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG 178
Query: 571 VLVSHDFRLINQVAE 585
+LV+H+ ++N E
Sbjct: 179 ILVTHELDMLNLYKE 193
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 26/210 (12%)
Query: 88 VKIANFSITFHGCEL----LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143
+++ N IT G L++ LE+N G + +LG NGSGK+TLL + +P
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL---LPYS 57
Query: 144 IDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI 203
+IF MEV + R + A E + ++ +Y+ L +
Sbjct: 58 GNIF--------------INGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGL 103
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
D +L L +E+ ++K S G + + + AL +P ++ LDEP ++
Sbjct: 104 DRDLF----LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159
Query: 264 DLDACVWLEEELKTYKRILVIISHSQDFLN 293
D + +K Y + ++++H D LN
Sbjct: 160 DAARRHVISRYIKEYGKEGILVTHELDMLN 189
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 47/206 (22%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG-----NREVPVPDHIDIFHLTREMPAS 156
+L+D + G++ L+G GSGK+T++ +L +R + D IDI + R +S
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR---SS 426
Query: 157 DKSALTCVME--VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAAN 214
+S++ V++ + E L D+E +E AA
Sbjct: 427 LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKE--------------------AAK 466
Query: 215 ILHGLGFTKEMQQ-------KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD--- 264
+ H F K + + +D S G R +A+ RA P +L+LDE T+++D
Sbjct: 467 LTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT 526
Query: 265 ---LDACVWLEEELKTYKRILVIISH 287
+ A +W E KT +II+H
Sbjct: 527 EKSIQAAMWKLMEGKTS----IIIAH 548
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 98/234 (41%), Gaps = 55/234 (23%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY----------- 448
I +NV F Y P + +++ F I ++ALVGP G+GK+T++NL+
Sbjct: 355 IEFKNVWFSYDKKKP-VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQIL 413
Query: 449 -----------GDLTPSVGMVRKNSHLRFARYHQHL---------HELLD-LDISPLDYM 487
L S+G+V +++ L ++L E+ + ++ D+
Sbjct: 414 VDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHF 473
Query: 488 LQSFPEVKDREEMRKIIGRYGLTGRQQVCP--IRQLSDGQKCRVVFAYLAWQAPHLLLLD 545
++ PE G + V LS GQ+ + P +L+LD
Sbjct: 474 IKHLPE-----------------GYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILD 516
Query: 546 EPTNHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTK 597
E T+++D +T ++ A+ G ++++H I A+ I + +G++ +
Sbjct: 517 EATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVE 569
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 108/263 (41%), Gaps = 51/263 (19%)
Query: 94 SITFHGCE---------LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI 144
S++F E +L + G +LG GSGKSTL+ + +P I
Sbjct: 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNL-------IPRLI 393
Query: 145 DIFHLTREMPASDKSALTCVMEVDEERVRLEKLAE---------QLVACEDDESQEQLMD 195
D P + +EVDE VR KL + Q +E L
Sbjct: 394 D--------PERGR------VEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLK- 438
Query: 196 IYDRLDDISADTAEARAANILHGL------GFTKEMQQKKTKDFSGGWRMRIALARALYV 249
+ R D + EA +H G+ ++ + ++FSGG + R+++ARAL
Sbjct: 439 -WGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE-RGGRNFSGGQKQRLSIARALVK 496
Query: 250 KPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTN-IIHLDKRKLK 308
KP +L+LD+ T+ +D + + LK Y + +Q + + I+ L + K+
Sbjct: 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVA 556
Query: 309 YYGGNYEAF--CKTRLELLENQM 329
+G + E CK E+ E+Q
Sbjct: 557 GFGTHKELLEHCKPYREIYESQF 579
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 93/233 (39%), Gaps = 56/233 (24%)
Query: 403 QNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN- 461
+NV FRY ++ + + F + + +A++G G+GKSTL+NLI + P G V +
Sbjct: 345 ENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE 404
Query: 462 ------------------------------SHLRFARYHQHLHELLD-LDISPLDYMLQS 490
+L++ R E+++ I+ + + S
Sbjct: 405 LDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIIS 464
Query: 491 FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550
PE D + R G R S GQK R+ A + P +L+LD+ T+
Sbjct: 465 LPEGYDSR-----VERGG----------RNFSGGQKQRLSIARALVKKPKVLILDDCTSS 509
Query: 551 LDMETIDALADAINDFEGGLVLVSHDFRLINQV-----AEEIWICENGKVTKW 598
+D T + D + + G F + ++ A++I + GKV +
Sbjct: 510 VDPITEKRILDGLKRYTKG----CTTFIITQKIPTALLADKILVLHEGKVAGF 558
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 90/211 (42%), Gaps = 49/211 (23%)
Query: 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIY------GDLTPS---------------VG 456
+++ F I T ALVG G+GKST+ L+Y GD+ +G
Sbjct: 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIG 96
Query: 457 MVRKNS---------HLRFARYHQHLHELLDLDISPLDY-MLQSFPEVKDREEMRKIIGR 506
+V +++ ++ + + E++ S Y +++ P+ D I+G
Sbjct: 97 IVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDT-----IVGN 151
Query: 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF 566
G+ +LS G++ R+ A + P +++ DE T+ LD +T A+ D
Sbjct: 152 KGM----------KLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201
Query: 567 EGG--LVLVSHDFRLINQVAEEIWICENGKV 595
L++++H I+ AE I + GK+
Sbjct: 202 RKNRTLIIIAHRLSTISS-AESIILLNKGKI 231
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVIISHSQD 290
SGG R RIA+AR L P +++ DE T+ LD ++ ++ + R L+II+H
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLS 215
Query: 291 FLNGVCTNIIHLDKRKL 307
++ +II L+K K+
Sbjct: 216 TISS-AESIILLNKGKI 231
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET----IDALADAINDFEGGLVLVSH 575
QLS G K RV+ A P +L+LDEPT+ LD+ T I L + + L+ V+H
Sbjct: 154 QLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTH 213
Query: 576 DFRLINQVAEEIWICENGKVTKWEGNILDYKETL 609
D + ++A+++ + G + ++ +K L
Sbjct: 214 DIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPL 247
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
SGG + R+ +A AL + P +L+LDEPT+ LD+
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDV 187
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 29/216 (13%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDL-------- 451
I V+N +F ++ P + F I +A+VG G GKS+LL+ + ++
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 452 -TPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEM----RKIIGR 506
SV V + + ++ +++ L+ ++Q+ + D E + R IG
Sbjct: 64 IKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGE 123
Query: 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF 566
G+ LS GQK RV A + + L D+P + +D + + +
Sbjct: 124 KGV----------NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGP 173
Query: 567 EGGL-----VLVSHDFRLINQVAEEIWICENGKVTK 597
+G L +LV+H + QV + I + GK+++
Sbjct: 174 KGMLKNKTRILVTHSMSYLPQV-DVIIVMSGGKISE 208
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKR 280
+K + SGG + R++LARA+Y + L D+P + +D + + + LK R
Sbjct: 123 EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTR 182
Query: 281 ILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319
ILV +HS +L V II + K+ G E +
Sbjct: 183 ILV--THSMSYLPQVDV-IIVMSGGKISEMGSYQELLAR 218
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 75/174 (43%), Gaps = 22/174 (12%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLR-------FARYHQHLHELLD-LDI 481
+ ++GPNG GK+T ++ G++T G V + F Y + + L+
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASK 356
Query: 482 SPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541
L F EV R + +++ + LS G+ ++ A + L
Sbjct: 357 DALSTSSWFFEEVTKRLNLHRLLE----------SNVNDLSGGELQKLYIAATLAKEADL 406
Query: 542 LLLDEPTNHLDMETIDALADAIN----DFEGGLVLVSHDFRLINQVAEEIWICE 591
+LD+P+++LD+E +A AI + + ++ HD + + +A+ I + +
Sbjct: 407 YVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 86/190 (45%), Gaps = 30/190 (15%)
Query: 427 DTRLALVGPNGAGKSTLLNLIYGDLTPSVG----MVRKNSHLRFAR---YHQHLHELLDL 479
+T L ++G NG GK+T+L ++ G++ P+ G V K+ L+ R + + EL
Sbjct: 25 NTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSN 84
Query: 480 DI-----------------SPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLS 522
++ ++ +L E ++E+++++ L + LS
Sbjct: 85 ELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI----LS 140
Query: 523 DGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLI 580
G R++ A + + + D+P+++LD+ +A AI + +++V HD ++
Sbjct: 141 GGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVL 200
Query: 581 NQVAEEIWIC 590
+ + + I I
Sbjct: 201 DYLTDLIHII 210
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR----IL 282
+ D SGG ++ +A L + L +LD+P+++LD++ + + +K R +
Sbjct: 380 ESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439
Query: 283 VIISHSQDFLNGVCTNII 300
II H + + II
Sbjct: 440 FIIDHDLSIHDYIADRII 457
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/216 (19%), Positives = 96/216 (44%), Gaps = 47/216 (21%)
Query: 117 GLLGLNGSGKSTLLAVLGNREVP---------VPDHI-------DIFHLTREMPASDKSA 160
G+LG NG GK+T+L +L +P D + +I++ +E+ +++
Sbjct: 29 GVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKI 88
Query: 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQ-EQLMDIYDRLDDISADTAEARAANILHGL 219
+ + V+ L+ +++ D+ + +++ ++ + + + D ANIL
Sbjct: 89 VHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKD------ANIL--- 139
Query: 220 GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD----LDACVWLEEEL 275
SGG R+ +A +L + + + D+P+++LD ++ + E L
Sbjct: 140 --------------SGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL 185
Query: 276 KTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
K + ++++ H L+ T++IH+ + YG
Sbjct: 186 KN--KYVIVVDHDLIVLD-YLTDLIHIIYGESSVYG 218
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 34/179 (18%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQ 489
L ++G NG GK+TL+ L+ G L P G Q + + L++ + P +
Sbjct: 381 LVMMGENGTGKTTLIKLLAGALKPDEG--------------QDIPK-LNVSMKP-QKIAP 424
Query: 490 SFPEVKDREEMRKIIGRYGLTGRQQ---VCPIR----------QLSDGQKCRVVFAYLAW 536
FP + +KI G++ L + Q V P+R LS G+ RV
Sbjct: 425 KFPGTVRQLFFKKIRGQF-LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALG 483
Query: 537 QAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICE 591
+ L+DEP+ +LD E + I F + +V HDF + +A+++ + E
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFE 542
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 40/194 (20%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN-------SHLRFARYHQHLHELLDLDIS 482
L LVG NG GKST L ++ G P++G + R + + ++L+ DI
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIK 165
Query: 483 P------------------------LDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPI 518
L ++ PE D + KI+ + R I
Sbjct: 166 AIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPE--DVKRYIKILQLENVLKRD----I 219
Query: 519 RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG---LVLVSH 575
+LS G+ R Q + + DEP+++LD++ A I ++ V H
Sbjct: 220 EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279
Query: 576 DFRLINQVAEEIWI 589
D +++ +++ + I
Sbjct: 280 DLSVLDYLSDFVCI 293
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILV 283
++ + SGG R+A+ AL + + L+DEP+ +LD + + + ++ + K+
Sbjct: 463 QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
Query: 284 IISHSQDFL 292
I+ H DF+
Sbjct: 523 IVEH--DFI 529
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVP-------VPDHIDIFHLTREMPASDKSALTCVM 165
G+ GL+G NG GKST L +L ++ P P+ +I R + ++ T ++
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRG--SELQNYFTKML 160
Query: 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEM 225
E D + + + + + Q+ + R++ D R IL + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDV--KRYIKILQ----LENV 214
Query: 226 QQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
++ + SGG R A+ + + + + DEP+++LD+
Sbjct: 215 LKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDV 254
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG + R+ALARAL P +LLLDEP + LD
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALD 159
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 56/213 (26%)
Query: 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLD 478
NL ++ ++GP GAGK+ L LI G P G + LLD
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI-----------------LLD 60
Query: 479 ----LDISP----LDYMLQS---FPEVKDREEMRKIIGRYGLTGRQQVCPIR-------- 519
D+SP + ++ Q+ FP + ++ + +G+ ++ P R
Sbjct: 61 GKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLE-----FGMRMKKIKDPKRVLDTARDL 115
Query: 520 -----------QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEG 568
LS G++ RV A P +LLLDEP + LD T + + ++
Sbjct: 116 KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK 175
Query: 569 ----GLVLVSHDFRLINQVAEEIWICENGKVTK 597
++ ++HD +A+ I + +GK+ +
Sbjct: 176 KNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 74/198 (37%), Gaps = 54/198 (27%)
Query: 390 PSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI-- 447
PS G++ V++++ +Y++ G I N+ F I R+ L+G G+GKSTLL+
Sbjct: 15 PSGGQM-----TVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69
Query: 448 --------------------------YGDLTPSV----GMVRKNSHLRFARYHQHLHELL 477
+G + V G RKN A Q + ++
Sbjct: 70 LLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVA 129
Query: 478 DLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
D EV R + + G+ C LS G K + A
Sbjct: 130 D--------------EVGLRSVIEQFPGKLDFVLVDGGC---VLSHGHKQLMCLARSVLS 172
Query: 538 APHLLLLDEPTNHLDMET 555
+LLLDEP+ HLD T
Sbjct: 173 KAKILLLDEPSAHLDPVT 190
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
G +L++ ++ G+R GLLG GSGKSTLL+
Sbjct: 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAF 67
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK-TYKRILVIISHSQDF 291
S G + + LAR++ K +LLLDEP+ HLD + LK + VI+ ++
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIE 215
Query: 292 LNGVCTNIIHLDKRKLKYYGGNYEAF 317
C + +++ K++ Y E +
Sbjct: 216 AMLECDQFLVIEENKVRQYDSILELY 241
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 408 RYSDDGPWI---------YRNLEFGIDLDTRLALVGPNGAGKSTLLN-LIYGDLTPSVGM 457
R DG W+ +N+ I L T +A+ G +G+GKSTL+N ++Y L +
Sbjct: 622 RRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHR 681
Query: 458 VR-KNSHLRFARYHQHLHELLDLDISPLDYMLQSFP 492
+ K R R +HL +++D+D SP+ +S P
Sbjct: 682 AKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 471 QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG-RYGLTGRQQVCPIRQLSDGQKCRV 529
+++ E+LD + S P++K + E +G Y G+ P LS G+ RV
Sbjct: 799 KNIAEVLDXTVEDALDFFASIPKIKRKLETLYDVGLGYXKLGQ----PATTLSGGEAQRV 854
Query: 530 VFA---YLAWQAPHLLLLDEPTNHLDMETIDALADAIN---DFEGGLVLVSHDFRLI 580
A + L +LDEPT L ++ I L D ++ D ++++ H+ +I
Sbjct: 855 KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI 911
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 408 RYSDDGPWI---------YRNLEFGIDLDTRLALVGPNGAGKSTLLN-LIYGDLTPSVGM 457
R DG W+ +N+ I L T +A+ G +G+GKSTL+N ++Y L +
Sbjct: 622 RRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHR 681
Query: 458 VR-KNSHLRFARYHQHLHELLDLDISPLDYMLQSFP 492
+ K R R +HL +++D+D SP+ +S P
Sbjct: 682 AKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 471 QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVV 530
+++ E+LD+ + S P++K + E +G G Q P LS G+ RV
Sbjct: 799 KNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVG-LGYMKLGQ--PATTLSGGEAQRVK 855
Query: 531 FA---YLAWQAPHLLLLDEPTNHLDMETIDALADAIN---DFEGGLVLVSHDFRLI 580
A + L +LDEPT L ++ I L D ++ D ++++ H+ +I
Sbjct: 856 LAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI 911
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 408 RYSDDGPWI---------YRNLEFGIDLDTRLALVGPNGAGKSTLLN-LIYGDLTPSVGM 457
R DG W+ +N+ I L T +A+ G +G+GKSTL+N ++Y L +
Sbjct: 320 RRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHR 379
Query: 458 VR-KNSHLRFARYHQHLHELLDLDISPLDYMLQSFP 492
+ K R R +HL +++D+D SP+ +S P
Sbjct: 380 AKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 415
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 471 QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVV 530
+++ E+LD+ + S P++K + E +G L + P LS G+ RV
Sbjct: 497 KNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVG---LGYMKLGQPATTLSGGEAQRVK 553
Query: 531 FA---YLAWQAPHLLLLDEPTNHLDMETIDALADAIN---DFEGGLVLVSHDFRLI 580
A + L +LDEPT L ++ I L D ++ D ++++ H+ +I
Sbjct: 554 LAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI 609
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 99/241 (41%), Gaps = 30/241 (12%)
Query: 410 SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGD------------------- 450
S DG I + + + AL+GPNGAGKSTL ++ GD
Sbjct: 12 SIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILE 71
Query: 451 LTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLT 510
L+P RK L F +Y + + + L + EV E K+ L
Sbjct: 72 LSPDE-RARKGLFLAF-QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELL 129
Query: 511 GRQQVCPIRQL----SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF 566
+ R L S G+K R L P +LDE + LD++ + +A +N
Sbjct: 130 DWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAM 189
Query: 567 EG---GLVLVSHDFRLINQV-AEEIWICENGKVTKWEGNILDYK-ETLRAKVLKEKNKSA 621
G G ++++H R++N + +++ + +G+V G L + E + LKEK K
Sbjct: 190 RGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGYEWLKEKVKEG 249
Query: 622 A 622
A
Sbjct: 250 A 250
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 109/267 (40%), Gaps = 39/267 (14%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL-GNREVPVP----- 141
++I + + G +L+ L + G + L+G NG+GKSTL +L G+ E V
Sbjct: 4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEIL 63
Query: 142 -DHIDIFHLTREMPASDKSALTCVMEVDEERVRLE---KLAEQLVACEDDESQEQLMDIY 197
D +I L+ + A L V+ V + +LA Q + E +
Sbjct: 64 LDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVK 123
Query: 198 DRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
L+ + D + + + + FSGG + R + + L ++P +LD
Sbjct: 124 KALELLDWDESY---------------LSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLD 168
Query: 258 EPTNHLDLDACVWLEEELKTYKRI---LVIISHSQDFLNGVCTNIIH--LDKRKLKYYGG 312
E + LD+DA + + + ++I+H Q LN + + +H +D R + G
Sbjct: 169 ETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228
Query: 313 NYEAFCKTRLELLENQMKQYNWEQDQI 339
LE + K Y W ++++
Sbjct: 229 ELA---------LELEAKGYEWLKEKV 246
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 17/208 (8%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+ I + S +F +L D L L+ G ++G +G GK+TLL L E P I +
Sbjct: 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL- 63
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
S K+ + + RL L ++ V +I L + T
Sbjct: 64 --------SGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYR---NIAYGLGNGKGRT 112
Query: 208 AEARA-ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266
A+ R + L E+ + + SGG + R ALARAL P L+LLDEP + LD
Sbjct: 113 AQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
Query: 267 ACVWLEEE----LKTYKRILVIISHSQD 290
+ E+ L+ + V +SH ++
Sbjct: 173 LRRQIREDMIAALRANGKSAVFVSHDRE 200
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 29/204 (14%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHE 475
+ ++ +D L ++G +G GK+TLL + G P G + + F++
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN---- 74
Query: 476 LLDLDISPLDYMLQS---FPEV---------------KDREEMRKIIGRYGLTGRQQVCP 517
L + L Y++Q FP + + +E ++I LTG ++
Sbjct: 75 -LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG 133
Query: 518 --IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD----METIDALADAINDFEGGLV 571
+LS GQ+ R A P L+LLDEP + LD + + + A+ V
Sbjct: 134 RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAV 193
Query: 572 LVSHDFRLINQVAEEIWICENGKV 595
VSHD Q A+ I + + G++
Sbjct: 194 FVSHDREEALQYADRIAVMKQGRI 217
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVGMV 458
++GPNG+GKSTL+N+I G L G V
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRV 64
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 33/180 (18%)
Query: 97 FHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG-------------NREVPVPDH 143
F + L + +N G ++G NGSGKSTL+ V+ N+++ +
Sbjct: 17 FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP 76
Query: 144 IDIFHL----TREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDR 199
+++H T + P K E L+ E + L ++ +
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVL---------------ENLLIGEICPGESPLNSLFYK 121
Query: 200 LDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEP 259
+ +A IL L + + +K + SGG + + RAL P ++++DEP
Sbjct: 122 KWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVGMV 458
++GPNG+GKSTL+N+I G L G V
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRV 64
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 33/159 (20%)
Query: 118 LLGLNGSGKSTLLAVLG-------------NREVPVPDHIDIFHL----TREMPASDKSA 160
++G NGSGKSTL+ V+ N+++ + +++H T + P K
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLG 220
E L+ E + + L ++ + + +A IL L
Sbjct: 98 TVL---------------ENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 221 FTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEP 259
+ + +K + SGG + + RAL P ++++DEP
Sbjct: 143 LS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVGMV 458
++GPNG+GKSTL+N+I G L G V
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRV 64
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 232 DFSGGWRMRIALARALYVKPHLL-------LLDEPTNHLDLDACVWLEEELKTYKRI--L 282
+ SGG ++ +AL+ L + L+ +LDEPT +LD + L E + K I +
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 283 VIISHSQDFLNGVCTNIIHLDK 304
+II+H ++ L V II++ K
Sbjct: 340 IIITHHRE-LEDVADVIINVKK 360
>pdb|3A24|A Chain A, Crystal Structure Of Bt1871 Retaining Glycosidase
pdb|3A24|B Chain B, Crystal Structure Of Bt1871 Retaining Glycosidase
Length = 641
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 511 GRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL-DMETIDALADAINDFEGG 569
G C +S G +CR + Y+ +++P +L D P+N++ + E+ +A+ ++
Sbjct: 490 GNYYPCYSEPMSQGTRCRQLALYVVFESPFNMLCDTPSNYMREPESTAFIAEIPTVWDES 549
Query: 570 LVLVSH--DFRLINQVAEEIWICENGKVTKWEG 600
+VL ++ + + ++W G +T W
Sbjct: 550 IVLDGKMGEYIVTARRKGDVWYV--GGITDWSA 580
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 250 KPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKY 309
+P +LLL +P HLD +W + + K ++ I ++ F + R+ +Y
Sbjct: 3 RPRVLLLGDPARHLD---DLWSDFQQK-FEVIPANLTTHDGFKQAL---------REKRY 49
Query: 310 YGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSA 354
G++EA K +EN + Y W D I+H+ + + F A
Sbjct: 50 --GDFEAIIKLA---VENGTESYPWNADLISHLPSSLKVFAAAGA 89
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 250 KPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKY 309
+P +LLL +P HLD +W + + K ++ I ++ F + R+ +Y
Sbjct: 3 RPRVLLLGDPARHLD---DLWSDFQQK-FEVIPANLTTHDGFKQAL---------REKRY 49
Query: 310 YGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSA 354
G++EA K +EN + Y W D I+H+ + + F A
Sbjct: 50 --GDFEAIIKLA---VENGTESYPWNADLISHLPSSLKVFAAAGA 89
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 250 KPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKY 309
+P +LLL +P HLD +W + + K ++ I ++ F + R+ +Y
Sbjct: 3 RPRVLLLGDPARHLD---DLWSDFQQK-FEVIPANLTTHDGFKQAL---------REKRY 49
Query: 310 YGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSA 354
G++EA K +EN + Y W D I+H+ + + F A
Sbjct: 50 --GDFEAIIKLA---VENGTESYPWNADIISHLPSSLKVFAAAGA 89
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 211 RAANILH--GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP---HLLLLDEPTNHL-- 263
R +LH GLG+ K Q T SGG RI LA L + L +LDEPT L
Sbjct: 784 RTLQVLHDVGLGYVKLGQPATT--LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHF 841
Query: 264 -DLDACVWLEEELKTYKRILVIISHSQDFL 292
D+ V + L +++I H+ D +
Sbjct: 842 EDVRKLVEVLHRLVDRGNTVIVIEHNLDVI 871
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRI 281
KE ++ SGG + +A+ RAL +P LL DEP+ L A + + E + ++I
Sbjct: 130 KERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGL---APILVSEVFEVIQKI 185
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 517 PIRQLSDGQKCRVVFA-------YLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG 569
P+ LS G++ + A YLA + LL+LDEPT +LD E L + +
Sbjct: 85 PLTFLSGGERIALGLAFRLAMSLYLAGEIS-LLILDEPTPYLDEERRRKLITIMERYLKK 143
Query: 570 L---VLVSHDFRLINQVAEEIWIC-ENG 593
+ +LVSHD L + I I ENG
Sbjct: 144 IPQVILVSHDEELKDAADHVIRISLENG 171
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 12/80 (15%)
Query: 233 FSGGWRMRIALA----RALYV--KPHLLLLDEPTNHLDLDA----CVWLEEELKTYKRIL 282
SGG R+ + LA +LY+ + LL+LDEPT +LD + +E LK ++
Sbjct: 89 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV- 147
Query: 283 VIISHSQDFLNGVCTNIIHL 302
+++SH ++ L ++I +
Sbjct: 148 ILVSHDEE-LKDAADHVIRI 166
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 517 PIRQLSDGQKCRVVFA-------YLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG 569
P+ LS G++ + A YLA + LL+LDEPT +LD E L + +
Sbjct: 265 PLTFLSGGERIALGLAFRLAMSLYLAGEIS-LLILDEPTPYLDEERRRKLITIMERYLKK 323
Query: 570 L---VLVSHDFRLINQVAEEIWIC-ENG 593
+ +LVSHD L + I I ENG
Sbjct: 324 IPQVILVSHDEELKDAADHVIRISLENG 351
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 517 PIRQLSDGQKCRVVFA-------YLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG 569
P+ LS G++ + A YLA + LL+LDEPT +LD E L + +
Sbjct: 245 PLTFLSGGERIALGLAFRLAMSLYLAGEIS-LLILDEPTPYLDEERRRKLITIMERYLKK 303
Query: 570 L---VLVSHDFRLINQVAEEIWIC-ENG 593
+ +LVSHD L + I I ENG
Sbjct: 304 IPQVILVSHDEELKDAADHVIRISLENG 331
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
NL F + + + GP+G GKSTLL ++ + S G
Sbjct: 9 NLYFQGSMSRPIVISGPSGTGKSTLLKKLFAEYPDSFG 46
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 29.3 bits (64), Expect = 6.1, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 491 FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-------YLAWQAPHLLL 543
+ EV R E K+ G+++ P+ LS G++ + A YLA + LL+
Sbjct: 30 YSEVVVRAEENKVRLFVVWEGKER--PLTFLSGGERIALGLAFRLAMSLYLAGEIS-LLI 86
Query: 544 LDEPTNHLDMETIDALADAINDFEGGL---VLVSHDFRLINQVAEEIWIC-ENG 593
LDEPT +LD E L + + + +LVSHD L + I I ENG
Sbjct: 87 LDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENG 140
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 107 MLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMP 154
+LEL GL+G GKSTLL+V+ + + + D +H T +P
Sbjct: 152 VLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIAD----YHFTTLVP 195
>pdb|4E2C|A Chain A, Crystal Structure Of The Periplasmic Domain Of The
Chimeric Lps O- Antigen Chain Length Regulator Protein
pdb|4E2C|B Chain B, Crystal Structure Of The Periplasmic Domain Of The
Chimeric Lps O- Antigen Chain Length Regulator Protein
Length = 245
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 438 AGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDR 497
AG + +N+IYG P V +++ RF+ L E LD P ++ P VK++
Sbjct: 25 AGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEPEKLTIE--PSVKNQ 82
Query: 498 E 498
+
Sbjct: 83 Q 83
>pdb|2RFR|A Chain A, Crystal Structure Of An Ntf2-Like Protein With A
Cystatin-Like Fold (Saro_3722) From Novosphingobium
Aromaticivorans Dsm At 1.16 A Resolution
Length = 155
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 494 VKDREEMRKIIGRYGL---TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
++DREE+R++I RYG +G + + DG+ V FA +A L+D T+
Sbjct: 15 LEDREEIRELIARYGPLADSGDAEALSELWVEDGEYAVVGFATAKGRAAIAALIDGQTH 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,833,953
Number of Sequences: 62578
Number of extensions: 740534
Number of successful extensions: 2516
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2064
Number of HSP's gapped (non-prelim): 386
length of query: 629
length of database: 14,973,337
effective HSP length: 105
effective length of query: 524
effective length of database: 8,402,647
effective search space: 4402987028
effective search space used: 4402987028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)