Query psy10512
Match_columns 629
No_of_seqs 807 out of 3258
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 20:08:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iw3_A Elongation factor 3A; a 100.0 3.3E-77 1.1E-81 694.0 46.2 427 86-597 434-978 (986)
2 1yqt_A RNAse L inhibitor; ATP- 100.0 3.2E-76 1.1E-80 658.8 31.7 446 88-607 21-493 (538)
3 3bk7_A ABC transporter ATP-bin 100.0 1.1E-74 3.8E-79 652.7 37.7 442 91-607 95-563 (607)
4 3j16_B RLI1P; ribosome recycli 100.0 2.9E-72 1E-76 631.8 31.6 453 92-608 82-560 (608)
5 3ozx_A RNAse L inhibitor; ATP 100.0 1.1E-71 3.7E-76 620.7 32.3 448 92-606 4-476 (538)
6 3g5u_A MCG1178, multidrug resi 100.0 2.4E-69 8.1E-74 657.5 34.9 205 398-607 1029-1258(1284)
7 3ux8_A Excinuclease ABC, A sub 100.0 1.2E-66 4.1E-71 598.7 33.2 441 99-606 30-639 (670)
8 4f4c_A Multidrug resistance pr 100.0 1.6E-64 5.5E-69 616.5 44.7 204 399-607 1076-1304(1321)
9 2vf7_A UVRA2, excinuclease ABC 100.0 2.1E-54 7.1E-59 499.0 37.2 333 208-606 356-826 (842)
10 3pih_A Uvrabc system protein A 100.0 6E-51 2E-55 473.8 33.5 334 211-607 443-902 (916)
11 2ygr_A Uvrabc system protein A 100.0 1.4E-50 4.8E-55 468.6 29.4 336 209-607 499-960 (993)
12 2r6f_A Excinuclease ABC subuni 100.0 3.1E-50 1E-54 464.1 31.3 333 209-606 482-941 (972)
13 3gfo_A Cobalt import ATP-bindi 100.0 1.1E-45 3.6E-50 378.1 24.5 207 397-607 5-233 (275)
14 3tif_A Uncharacterized ABC tra 100.0 1.1E-45 3.8E-50 370.5 23.8 203 399-605 1-232 (235)
15 3tui_C Methionine import ATP-b 100.0 2.3E-45 7.7E-50 386.9 27.0 208 395-606 20-252 (366)
16 1b0u_A Histidine permease; ABC 100.0 1.4E-44 4.9E-49 368.1 26.4 204 398-606 5-241 (262)
17 3gfo_A Cobalt import ATP-bindi 100.0 1.1E-45 3.9E-50 377.8 18.3 220 87-317 7-232 (275)
18 2olj_A Amino acid ABC transpor 100.0 3.5E-45 1.2E-49 372.1 21.6 216 87-313 24-243 (263)
19 3fvq_A Fe(3+) IONS import ATP- 100.0 3.6E-45 1.2E-49 385.2 22.4 220 87-317 4-227 (359)
20 2olj_A Amino acid ABC transpor 100.0 2.6E-44 9E-49 365.6 27.3 203 398-606 23-247 (263)
21 3rlf_A Maltose/maltodextrin im 100.0 7E-45 2.4E-49 385.6 23.8 216 87-317 3-222 (381)
22 3fvq_A Fe(3+) IONS import ATP- 100.0 2.2E-44 7.4E-49 379.3 27.3 204 398-607 3-228 (359)
23 4g1u_C Hemin import ATP-bindin 100.0 2.5E-44 8.4E-49 366.8 26.9 204 397-606 9-236 (266)
24 3tui_C Methionine import ATP-b 100.0 2.6E-45 8.9E-50 386.5 19.1 221 87-317 24-252 (366)
25 1b0u_A Histidine permease; ABC 100.0 5.4E-45 1.9E-49 371.2 20.5 220 87-314 6-238 (262)
26 2ihy_A ABC transporter, ATP-bi 100.0 1.8E-44 6.2E-49 370.1 23.5 206 397-606 19-251 (279)
27 2pcj_A ABC transporter, lipopr 100.0 4.2E-44 1.4E-48 356.5 25.1 196 398-600 3-221 (224)
28 1ji0_A ABC transporter; ATP bi 100.0 4.3E-44 1.5E-48 360.1 25.4 204 397-606 4-227 (240)
29 1z47_A CYSA, putative ABC-tran 100.0 2.3E-44 7.9E-49 379.3 23.7 218 83-317 10-234 (355)
30 1vpl_A ABC transporter, ATP-bi 100.0 6.3E-44 2.1E-48 361.6 25.8 205 397-607 13-235 (256)
31 1g6h_A High-affinity branched- 100.0 2.5E-44 8.4E-49 365.6 22.7 202 397-604 5-239 (257)
32 4g1u_C Hemin import ATP-bindin 100.0 1.4E-44 4.6E-49 368.8 20.6 214 87-315 11-234 (266)
33 3rlf_A Maltose/maltodextrin im 100.0 7.4E-44 2.5E-48 377.7 27.0 203 399-607 3-223 (381)
34 2pcj_A ABC transporter, lipopr 100.0 2.6E-44 9E-49 358.0 21.9 214 87-311 4-221 (224)
35 3tif_A Uncharacterized ABC tra 100.0 2.5E-44 8.7E-49 360.6 20.0 216 87-312 1-228 (235)
36 1z47_A CYSA, putative ABC-tran 100.0 1.7E-43 6E-48 372.6 26.9 205 396-606 11-234 (355)
37 2onk_A Molybdate/tungstate ABC 100.0 1.7E-43 5.7E-48 355.3 25.5 199 399-606 1-215 (240)
38 2yz2_A Putative ABC transporte 100.0 1.6E-43 5.5E-48 361.3 25.5 205 399-606 2-226 (266)
39 1g6h_A High-affinity branched- 100.0 1.6E-44 5.5E-49 367.0 17.3 216 87-314 7-238 (257)
40 2yyz_A Sugar ABC transporter, 100.0 6.7E-44 2.3E-48 376.7 22.4 214 87-317 3-222 (359)
41 2it1_A 362AA long hypothetical 100.0 8.6E-44 3E-48 376.3 23.0 216 87-317 3-222 (362)
42 1vpl_A ABC transporter, ATP-bi 100.0 6E-44 2E-48 361.8 19.9 212 87-312 15-229 (256)
43 1g29_1 MALK, maltose transport 100.0 1.6E-43 5.3E-48 376.3 23.6 215 87-317 3-228 (372)
44 2nq2_C Hypothetical ABC transp 100.0 4.2E-43 1.4E-47 355.3 25.4 200 399-606 4-216 (253)
45 2yyz_A Sugar ABC transporter, 100.0 4.5E-43 1.5E-47 370.4 26.1 203 399-607 3-223 (359)
46 1v43_A Sugar-binding transport 100.0 1.6E-43 5.3E-48 375.6 22.4 214 87-317 11-230 (372)
47 2it1_A 362AA long hypothetical 100.0 6.3E-43 2.2E-47 369.7 26.6 202 399-606 3-222 (362)
48 1oxx_K GLCV, glucose, ABC tran 100.0 9.9E-44 3.4E-48 375.6 19.6 216 87-317 3-229 (353)
49 1g29_1 MALK, maltose transport 100.0 1.1E-42 3.9E-47 369.7 27.3 202 399-606 3-228 (372)
50 1ji0_A ABC transporter; ATP bi 100.0 9.2E-44 3.1E-48 357.7 17.7 213 87-312 6-222 (240)
51 1oxx_K GLCV, glucose, ABC tran 100.0 5.7E-43 2E-47 369.7 24.4 202 399-606 3-229 (353)
52 1v43_A Sugar-binding transport 100.0 9.9E-43 3.4E-47 369.5 26.3 202 399-606 11-230 (372)
53 2ihy_A ABC transporter, ATP-bi 100.0 7.7E-44 2.6E-48 365.5 17.0 217 84-312 18-246 (279)
54 3d31_A Sulfate/molybdate ABC t 100.0 3.7E-43 1.2E-47 369.9 21.0 211 87-316 1-215 (348)
55 3d31_A Sulfate/molybdate ABC t 100.0 1.5E-42 5.1E-47 365.3 25.4 200 399-606 1-216 (348)
56 2ff7_A Alpha-hemolysin translo 100.0 1.6E-42 5.3E-47 350.0 23.6 202 399-606 7-231 (247)
57 2zu0_C Probable ATP-dependent 100.0 1.3E-42 4.3E-47 354.7 23.1 204 397-605 18-252 (267)
58 2yz2_A Putative ABC transporte 100.0 2.2E-43 7.6E-48 360.2 17.1 211 87-313 2-222 (266)
59 2onk_A Molybdate/tungstate ABC 100.0 8.2E-43 2.8E-47 350.3 20.9 206 88-313 2-211 (240)
60 2d2e_A SUFC protein; ABC-ATPas 100.0 1.3E-42 4.6E-47 351.4 21.9 200 399-603 3-229 (250)
61 2pjz_A Hypothetical protein ST 100.0 1.7E-42 5.8E-47 352.3 22.6 199 399-606 1-214 (263)
62 2nq2_C Hypothetical ABC transp 100.0 4.2E-42 1.4E-46 348.0 25.1 198 87-316 4-214 (253)
63 3nh6_A ATP-binding cassette SU 100.0 2.1E-42 7.1E-47 358.2 22.7 203 398-607 52-277 (306)
64 2zu0_C Probable ATP-dependent 100.0 7.5E-43 2.6E-47 356.4 18.5 216 86-313 19-249 (267)
65 2ixe_A Antigen peptide transpo 100.0 5.2E-42 1.8E-46 350.8 24.2 204 398-607 15-245 (271)
66 1mv5_A LMRA, multidrug resista 100.0 1.8E-42 6.2E-47 349.1 20.0 203 399-607 1-226 (243)
67 2qi9_C Vitamin B12 import ATP- 100.0 4.7E-42 1.6E-46 346.5 23.0 197 399-606 4-221 (249)
68 2d2e_A SUFC protein; ABC-ATPas 100.0 4.8E-43 1.6E-47 354.6 15.7 215 87-312 3-227 (250)
69 2pze_A Cystic fibrosis transme 100.0 1.4E-41 4.8E-46 339.4 24.0 200 398-606 5-217 (229)
70 2pjz_A Hypothetical protein ST 100.0 1.7E-41 5.7E-46 345.0 21.4 203 87-312 1-209 (263)
71 2cbz_A Multidrug resistance-as 100.0 1.3E-41 4.4E-46 341.3 19.7 200 399-607 3-217 (237)
72 1sgw_A Putative ABC transporte 100.0 3.3E-42 1.1E-46 339.6 14.6 190 398-595 9-210 (214)
73 2ff7_A Alpha-hemolysin translo 100.0 1E-41 3.6E-46 344.0 18.3 207 86-313 6-227 (247)
74 2ghi_A Transport protein; mult 100.0 4.7E-41 1.6E-45 341.8 22.5 203 398-607 16-242 (260)
75 2ixe_A Antigen peptide transpo 100.0 6.4E-42 2.2E-46 350.1 15.1 211 86-313 15-240 (271)
76 1tf7_A KAIC; homohexamer, hexa 100.0 3.4E-43 1.2E-47 392.9 1.8 387 88-594 13-444 (525)
77 2qi9_C Vitamin B12 import ATP- 100.0 3.6E-41 1.2E-45 340.0 15.2 203 87-312 4-216 (249)
78 3nh6_A ATP-binding cassette SU 100.0 1.3E-40 4.5E-45 344.8 19.5 209 86-314 52-273 (306)
79 1sgw_A Putative ABC transporte 100.0 2.3E-41 7.7E-46 333.6 12.6 199 86-307 9-210 (214)
80 1mv5_A LMRA, multidrug resista 100.0 5.9E-41 2E-45 338.0 12.5 206 88-316 2-223 (243)
81 3gd7_A Fusion complex of cysti 100.0 4.3E-40 1.5E-44 351.3 19.6 201 398-607 18-242 (390)
82 2pze_A Cystic fibrosis transme 100.0 5.5E-39 1.9E-43 320.6 22.3 190 86-313 5-213 (229)
83 2ghi_A Transport protein; mult 100.0 2.7E-40 9.2E-45 336.2 12.8 206 87-313 17-237 (260)
84 2cbz_A Multidrug resistance-as 100.0 1.8E-39 6.2E-44 325.7 17.1 192 87-313 3-212 (237)
85 2bbs_A Cystic fibrosis transme 100.0 4.4E-39 1.5E-43 331.6 19.6 195 398-606 39-246 (290)
86 3gd7_A Fusion complex of cysti 100.0 9.8E-40 3.4E-44 348.5 13.0 209 86-317 18-241 (390)
87 3b5x_A Lipid A export ATP-bind 100.0 3.5E-38 1.2E-42 356.5 24.8 204 398-607 340-567 (582)
88 4a82_A Cystic fibrosis transme 100.0 2.5E-38 8.5E-43 357.2 22.4 204 398-607 338-564 (578)
89 3b60_A Lipid A export ATP-bind 100.0 4E-38 1.4E-42 356.0 22.2 204 398-607 340-567 (582)
90 3qf4_A ABC transporter, ATP-bi 100.0 6.1E-38 2.1E-42 354.3 23.1 204 398-607 340-566 (587)
91 2yl4_A ATP-binding cassette SU 100.0 8E-38 2.7E-42 354.4 22.7 202 400-606 342-569 (595)
92 3qf4_B Uncharacterized ABC tra 100.0 3.3E-38 1.1E-42 357.5 18.4 203 398-607 353-578 (598)
93 3b5x_A Lipid A export ATP-bind 100.0 6.2E-37 2.1E-41 346.3 21.2 211 86-317 340-565 (582)
94 2bbs_A Cystic fibrosis transme 100.0 1.4E-36 4.9E-41 312.8 18.6 186 87-313 40-242 (290)
95 3qf4_A ABC transporter, ATP-bi 100.0 1.1E-36 3.8E-41 344.0 16.7 211 86-317 340-564 (587)
96 3b60_A Lipid A export ATP-bind 100.0 1.1E-36 3.7E-41 344.2 16.5 208 86-313 340-562 (582)
97 4a82_A Cystic fibrosis transme 100.0 8.2E-37 2.8E-41 344.8 14.2 208 86-313 338-559 (578)
98 2yl4_A ATP-binding cassette SU 100.0 1.4E-36 4.8E-41 344.2 14.7 212 86-314 339-566 (595)
99 3qf4_B Uncharacterized ABC tra 100.0 8.4E-37 2.9E-41 345.9 11.4 210 86-317 353-576 (598)
100 1yqt_A RNAse L inhibitor; ATP- 100.0 2.8E-35 9.4E-40 328.5 22.4 196 86-316 286-491 (538)
101 2iw3_A Elongation factor 3A; a 100.0 7.6E-35 2.6E-39 338.9 26.1 200 399-607 435-635 (986)
102 3bk7_A ABC transporter ATP-bin 100.0 3.3E-35 1.1E-39 331.3 22.0 196 86-316 356-561 (607)
103 3ozx_A RNAse L inhibitor; ATP 100.0 6.3E-35 2.2E-39 324.8 21.2 195 86-314 268-473 (538)
104 3g5u_A MCG1178, multidrug resi 100.0 8.4E-35 2.9E-39 354.2 19.9 204 398-607 386-613 (1284)
105 4f4c_A Multidrug resistance pr 100.0 1.9E-34 6.4E-39 352.0 19.7 202 399-606 415-640 (1321)
106 3j16_B RLI1P; ribosome recycli 100.0 7.6E-34 2.6E-38 319.6 18.7 194 91-318 350-559 (608)
107 3ux8_A Excinuclease ABC, A sub 100.0 1.5E-32 5.2E-37 315.4 16.9 191 415-607 32-298 (670)
108 2vf7_A UVRA2, excinuclease ABC 100.0 1.6E-29 5.6E-34 291.8 18.9 104 209-313 707-822 (842)
109 3pih_A Uvrabc system protein A 100.0 6.5E-29 2.2E-33 289.0 17.9 106 209-315 782-899 (916)
110 2npi_A Protein CLP1; CLP1-PCF1 100.0 2.1E-32 7.1E-37 298.8 -11.1 196 397-606 116-337 (460)
111 2r6f_A Excinuclease ABC subuni 100.0 4.5E-28 1.6E-32 279.9 20.2 105 210-315 823-939 (972)
112 2ygr_A Uvrabc system protein A 100.0 8E-28 2.7E-32 278.9 21.1 103 210-313 841-955 (993)
113 4aby_A DNA repair protein RECN 99.9 4.5E-28 1.5E-32 262.8 13.7 77 233-310 296-380 (415)
114 4aby_A DNA repair protein RECN 99.9 7.7E-28 2.6E-32 261.0 14.8 76 521-597 296-379 (415)
115 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.1E-30 3.9E-35 285.1 -13.0 196 87-315 118-334 (460)
116 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1E-25 3.5E-30 239.9 15.3 80 516-596 275-363 (365)
117 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2E-25 6.8E-30 237.7 17.2 82 227-309 274-364 (365)
118 4gp7_A Metallophosphoesterase; 99.9 2.1E-26 7.1E-31 219.2 6.5 145 105-294 1-164 (171)
119 4gp7_A Metallophosphoesterase; 99.9 4E-26 1.4E-30 217.2 4.3 146 419-583 1-165 (171)
120 3b85_A Phosphate starvation-in 99.9 4.3E-27 1.5E-31 230.8 -4.1 147 415-594 14-171 (208)
121 3b85_A Phosphate starvation-in 99.9 6.7E-27 2.3E-31 229.4 -7.6 153 96-294 9-163 (208)
122 1ye8_A Protein THEP1, hypothet 99.9 1.1E-24 3.8E-29 208.5 7.8 142 429-598 2-160 (178)
123 1e69_A Chromosome segregation 99.9 2E-23 6.7E-28 218.8 15.3 89 515-604 214-310 (322)
124 1e69_A Chromosome segregation 99.9 1.8E-23 6.3E-28 219.1 13.4 87 226-313 213-307 (322)
125 1ye8_A Protein THEP1, hypothet 99.9 6.9E-24 2.4E-28 203.0 5.3 81 225-309 69-159 (178)
126 1tq4_A IIGP1, interferon-induc 99.9 1.6E-25 5.3E-30 240.5 -10.6 170 415-594 37-255 (413)
127 2o5v_A DNA replication and rep 99.9 5.8E-21 2E-25 201.8 19.4 83 227-313 259-351 (359)
128 3qkt_A DNA double-strand break 99.9 4.3E-21 1.5E-25 202.5 16.4 77 226-303 242-327 (339)
129 1tq4_A IIGP1, interferon-induc 99.8 7.3E-24 2.5E-28 227.5 -7.0 172 100-305 36-254 (413)
130 2v9p_A Replication protein E1; 99.8 3.4E-25 1.2E-29 228.6 -17.5 163 399-605 101-264 (305)
131 3qkt_A DNA double-strand break 99.8 4.7E-21 1.6E-25 202.2 13.1 80 515-595 243-333 (339)
132 1znw_A Guanylate kinase, GMP k 99.8 1E-22 3.4E-27 199.7 -2.4 178 100-303 9-202 (207)
133 3b9q_A Chloroplast SRP recepto 99.8 1.8E-22 6E-27 209.1 -1.9 166 418-595 91-284 (302)
134 2v9p_A Replication protein E1; 99.8 7.7E-25 2.6E-29 225.9 -20.4 162 87-316 101-263 (305)
135 2o5v_A DNA replication and rep 99.8 1.6E-20 5.5E-25 198.5 10.7 84 516-604 260-353 (359)
136 2pt7_A CAG-ALFA; ATPase, prote 99.8 2.1E-22 7.1E-27 211.3 -4.3 134 101-307 159-292 (330)
137 1znw_A Guanylate kinase, GMP k 99.8 4.2E-23 1.4E-27 202.4 -10.1 161 415-591 10-202 (207)
138 4ad8_A DNA repair protein RECN 99.8 2E-19 7E-24 200.2 18.3 77 516-593 392-473 (517)
139 3aez_A Pantothenate kinase; tr 99.8 2.9E-23 1E-27 216.0 -12.2 175 399-593 43-245 (312)
140 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.6E-21 5.6E-26 204.5 -0.3 133 416-595 160-292 (330)
141 1z6g_A Guanylate kinase; struc 99.8 3.2E-23 1.1E-27 205.0 -12.5 141 416-566 12-173 (218)
142 3b9q_A Chloroplast SRP recepto 99.8 1.5E-21 5.2E-26 202.1 -1.9 190 96-307 83-284 (302)
143 2og2_A Putative signal recogni 99.8 2.1E-21 7.3E-26 204.8 -0.9 165 419-595 149-341 (359)
144 1z6g_A Guanylate kinase; struc 99.8 2.5E-22 8.6E-27 198.6 -7.6 180 100-302 10-207 (218)
145 1cr0_A DNA primase/helicase; R 99.8 8.1E-20 2.8E-24 188.9 10.8 181 100-307 22-237 (296)
146 1tf7_A KAIC; homohexamer, hexa 99.8 6.8E-21 2.3E-25 212.5 2.1 168 88-306 258-444 (525)
147 2dpy_A FLII, flagellum-specifi 99.8 1.7E-21 5.7E-26 211.6 -3.1 173 397-597 129-335 (438)
148 2o8b_B DNA mismatch repair pro 99.8 3.8E-20 1.3E-24 219.1 7.4 165 397-596 748-930 (1022)
149 2obl_A ESCN; ATPase, hydrolase 99.8 1.2E-21 4.1E-26 206.6 -4.9 184 397-601 43-249 (347)
150 2obl_A ESCN; ATPase, hydrolase 99.8 1E-21 3.5E-26 207.1 -5.9 189 87-311 45-248 (347)
151 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 3.8E-19 1.3E-23 164.5 10.7 80 226-306 51-141 (148)
152 2o8b_B DNA mismatch repair pro 99.8 1.1E-19 3.7E-24 215.2 8.3 165 86-309 749-931 (1022)
153 3aez_A Pantothenate kinase; tr 99.8 2.4E-22 8.1E-27 209.1 -13.5 180 87-306 43-246 (312)
154 3thx_A DNA mismatch repair pro 99.8 1.6E-19 5.5E-24 211.2 7.6 155 87-310 631-805 (934)
155 2og2_A Putative signal recogni 99.8 1.6E-20 5.5E-25 198.1 -1.1 176 104-307 148-341 (359)
156 2dpy_A FLII, flagellum-specifi 99.8 5.1E-21 1.8E-25 207.7 -5.0 194 86-312 130-338 (438)
157 1w1w_A Structural maintenance 99.8 2.1E-18 7.2E-23 187.7 15.3 75 228-303 329-410 (430)
158 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 1.2E-18 4.2E-23 161.0 10.6 80 515-595 52-142 (148)
159 1cr0_A DNA primase/helicase; R 99.8 2.4E-19 8.1E-24 185.3 6.4 176 416-595 24-237 (296)
160 2i3b_A HCR-ntpase, human cance 99.8 1E-20 3.5E-25 182.5 -5.1 142 427-598 1-168 (189)
161 3sop_A Neuronal-specific septi 99.8 2.9E-20 9.9E-25 189.6 -2.8 139 429-579 4-152 (270)
162 2eyu_A Twitching motility prot 99.7 7.9E-20 2.7E-24 185.4 0.1 141 88-304 6-147 (261)
163 2eyu_A Twitching motility prot 99.7 8E-20 2.7E-24 185.4 0.0 138 399-588 5-143 (261)
164 3thx_A DNA mismatch repair pro 99.7 9.8E-19 3.3E-23 204.6 9.0 156 398-596 630-803 (934)
165 3thx_B DNA mismatch repair pro 99.7 9.9E-19 3.4E-23 204.0 8.1 154 87-299 640-805 (918)
166 1ewq_A DNA mismatch repair pro 99.7 1.4E-18 4.9E-23 199.8 8.3 145 399-584 550-704 (765)
167 2jeo_A Uridine-cytidine kinase 99.7 5.3E-19 1.8E-23 177.8 3.6 168 414-609 12-189 (245)
168 3thx_B DNA mismatch repair pro 99.7 2E-18 6.9E-23 201.4 5.9 138 414-585 660-803 (918)
169 2ehv_A Hypothetical protein PH 99.7 8.9E-18 3E-22 168.3 9.1 72 233-304 118-207 (251)
170 2ehv_A Hypothetical protein PH 99.7 9.6E-18 3.3E-22 168.1 8.1 180 399-591 6-206 (251)
171 4a74_A DNA repair and recombin 99.7 2.1E-17 7.3E-22 163.3 10.5 65 241-305 109-200 (231)
172 4a74_A DNA repair and recombin 99.7 1.8E-17 6.1E-22 163.9 9.8 149 423-593 21-200 (231)
173 2i3b_A HCR-ntpase, human cance 99.7 9.5E-20 3.2E-24 175.8 -6.9 159 113-317 1-176 (189)
174 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.1E-17 3.8E-22 165.5 7.4 167 100-305 9-192 (235)
175 2jeo_A Uridine-cytidine kinase 99.7 4.8E-18 1.6E-22 170.7 4.7 160 98-305 10-179 (245)
176 1ewq_A DNA mismatch repair pro 99.7 1E-17 3.4E-22 192.8 6.7 145 87-296 550-704 (765)
177 2w0m_A SSO2452; RECA, SSPF, un 99.7 3.1E-17 1E-21 162.2 8.7 164 416-593 11-192 (235)
178 3kta_B Chromosome segregation 99.7 1.3E-16 4.4E-21 151.3 11.0 93 226-319 58-158 (173)
179 3asz_A Uridine kinase; cytidin 99.7 3.4E-19 1.2E-23 174.5 -7.7 142 424-577 3-161 (211)
180 3sop_A Neuronal-specific septi 99.7 1.4E-18 4.9E-23 177.0 -3.8 148 115-291 4-152 (270)
181 3kta_B Chromosome segregation 99.6 1.5E-15 5.1E-20 144.0 14.7 93 516-609 60-160 (173)
182 1pui_A ENGB, probable GTP-bind 99.6 4.7E-17 1.6E-21 158.6 4.2 163 399-566 3-196 (210)
183 1pui_A ENGB, probable GTP-bind 99.6 3.2E-17 1.1E-21 159.8 2.0 181 87-278 3-196 (210)
184 3jvv_A Twitching mobility prot 99.6 3.7E-17 1.3E-21 172.8 1.7 145 403-591 92-244 (356)
185 2qnr_A Septin-2, protein NEDD5 99.6 1.5E-18 5E-23 179.9 -9.6 163 91-290 2-168 (301)
186 2qnr_A Septin-2, protein NEDD5 99.6 5.2E-18 1.8E-22 175.8 -5.6 156 403-578 2-168 (301)
187 3jvv_A Twitching mobility prot 99.6 7.8E-17 2.7E-21 170.3 2.0 144 91-304 92-245 (356)
188 1nlf_A Regulatory protein REPA 99.6 7.1E-16 2.4E-20 157.9 9.1 78 212-293 99-185 (279)
189 1wb9_A DNA mismatch repair pro 99.6 2.3E-16 7.9E-21 182.5 4.3 146 415-595 596-747 (800)
190 1wb9_A DNA mismatch repair pro 99.6 2.2E-16 7.5E-21 182.7 3.6 150 98-308 593-748 (800)
191 2cvh_A DNA repair and recombin 99.6 5.4E-15 1.9E-19 145.0 10.9 76 230-305 82-185 (220)
192 4ad8_A DNA repair protein RECN 99.6 2.4E-15 8.4E-20 167.3 9.5 77 228-305 392-473 (517)
193 1nlf_A Regulatory protein REPA 99.6 2.9E-15 1E-19 153.3 9.0 143 423-581 26-185 (279)
194 2cvh_A DNA repair and recombin 99.6 1.2E-14 4E-19 142.5 12.1 147 416-593 8-185 (220)
195 3asz_A Uridine kinase; cytidin 99.6 7E-18 2.4E-22 165.2 -11.8 145 110-290 3-162 (211)
196 1rj9_A FTSY, signal recognitio 99.5 5.1E-16 1.7E-20 160.7 0.3 139 426-578 101-259 (304)
197 3szr_A Interferon-induced GTP- 99.5 2.2E-16 7.7E-21 178.5 -3.9 170 398-595 9-226 (608)
198 1pzn_A RAD51, DNA repair and r 99.5 4.8E-15 1.7E-19 156.5 5.6 158 101-309 118-306 (349)
199 1pzn_A RAD51, DNA repair and r 99.5 5.4E-15 1.9E-19 156.2 4.9 154 416-594 119-303 (349)
200 2qag_C Septin-7; cell cycle, c 99.5 1.6E-15 5.6E-20 163.2 -1.2 159 398-579 10-179 (418)
201 2qag_C Septin-7; cell cycle, c 99.5 4.2E-15 1.4E-19 160.0 1.9 162 87-290 11-178 (418)
202 1rj9_A FTSY, signal recognitio 99.5 6.7E-15 2.3E-19 152.3 3.3 156 112-289 101-258 (304)
203 3auy_A DNA double-strand break 99.5 9.8E-14 3.4E-18 147.9 11.5 75 228-303 276-359 (371)
204 2ewv_A Twitching motility prot 99.5 4.1E-15 1.4E-19 158.4 0.3 126 416-587 127-253 (372)
205 3auy_A DNA double-strand break 99.5 2.3E-13 8E-18 145.0 12.2 75 516-591 276-359 (371)
206 1s96_A Guanylate kinase, GMP k 99.4 2.1E-14 7.2E-19 141.6 2.1 144 421-609 10-162 (219)
207 1lw7_A Transcriptional regulat 99.4 2.6E-15 8.9E-20 159.8 -5.5 163 103-303 158-342 (365)
208 2ewv_A Twitching motility prot 99.4 3.3E-14 1.1E-18 151.3 3.0 130 102-303 127-257 (372)
209 1n0w_A DNA repair protein RAD5 99.4 8.3E-13 2.8E-17 131.4 12.9 142 423-593 20-209 (243)
210 3szr_A Interferon-induced GTP- 99.4 1.4E-15 4.8E-20 172.0 -8.7 160 87-291 10-198 (608)
211 2gza_A Type IV secretion syste 99.4 4.6E-15 1.6E-19 157.5 -4.9 155 401-594 137-303 (361)
212 1n0w_A DNA repair protein RAD5 99.4 1E-12 3.6E-17 130.6 12.5 57 249-305 118-209 (243)
213 2bbw_A Adenylate kinase 4, AK4 99.4 6.4E-14 2.2E-18 140.6 1.3 141 112-278 26-196 (246)
214 1zp6_A Hypothetical protein AT 99.4 5E-15 1.7E-19 142.3 -7.0 138 423-576 5-159 (191)
215 1lw7_A Transcriptional regulat 99.4 5.6E-15 1.9E-19 157.2 -7.5 164 417-591 158-342 (365)
216 1w1w_A Structural maintenance 99.4 1.4E-12 4.9E-17 141.6 10.3 75 516-591 329-410 (430)
217 3ec2_A DNA replication protein 99.3 2.3E-13 7.8E-18 129.6 3.5 42 249-290 99-144 (180)
218 2gza_A Type IV secretion syste 99.3 6.5E-14 2.2E-18 148.6 -2.3 153 89-306 137-303 (361)
219 1zp6_A Hypothetical protein AT 99.3 2.2E-14 7.5E-19 137.7 -5.4 161 109-299 5-169 (191)
220 1s96_A Guanylate kinase, GMP k 99.3 1.7E-12 5.7E-17 128.0 7.1 50 245-305 102-151 (219)
221 2bbw_A Adenylate kinase 4, AK4 99.3 2.2E-14 7.4E-19 144.0 -6.7 131 426-567 26-197 (246)
222 2bdt_A BH3686; alpha-beta prot 99.3 2.6E-15 8.9E-20 144.3 -13.0 72 234-311 96-177 (189)
223 2bdt_A BH3686; alpha-beta prot 99.3 3.7E-15 1.3E-19 143.2 -12.0 158 427-606 2-183 (189)
224 2qag_B Septin-6, protein NEDD5 99.3 2.2E-13 7.6E-18 146.0 0.2 168 399-577 16-219 (427)
225 1udx_A The GTP-binding protein 99.3 6.7E-13 2.3E-17 142.7 3.2 146 417-577 147-309 (416)
226 1ls1_A Signal recognition part 99.3 2E-13 6.7E-18 140.8 -1.6 118 418-566 91-209 (295)
227 3ec2_A DNA replication protein 99.3 6.4E-13 2.2E-17 126.5 1.8 108 421-577 32-143 (180)
228 3lda_A DNA repair protein RAD5 99.3 4.1E-11 1.4E-15 128.3 14.7 57 249-305 272-363 (400)
229 1htw_A HI0065; nucleotide-bind 99.2 6.8E-14 2.3E-18 130.7 -7.1 59 88-147 8-66 (158)
230 2rcn_A Probable GTPase ENGC; Y 99.2 2.2E-12 7.4E-17 135.6 3.4 114 417-535 206-328 (358)
231 3lda_A DNA repair protein RAD5 99.2 3.5E-11 1.2E-15 128.8 12.5 142 423-593 174-363 (400)
232 1udx_A The GTP-binding protein 99.2 7.5E-13 2.5E-17 142.4 -0.8 160 103-298 147-318 (416)
233 2kjq_A DNAA-related protein; s 99.2 9.8E-12 3.4E-16 114.9 6.6 86 426-576 35-124 (149)
234 2qag_B Septin-6, protein NEDD5 99.2 1.9E-12 6.5E-17 138.8 2.0 172 87-288 16-218 (427)
235 2kjq_A DNAA-related protein; s 99.2 6.5E-12 2.2E-16 116.1 5.1 28 112-139 35-62 (149)
236 1p9r_A General secretion pathw 99.2 1.4E-13 4.9E-18 148.1 -9.6 160 88-256 144-315 (418)
237 1nij_A Hypothetical protein YJ 99.2 1.9E-13 6.5E-18 142.6 -8.4 53 232-295 141-195 (318)
238 3c8u_A Fructokinase; YP_612366 99.2 3.2E-13 1.1E-17 131.9 -6.5 141 424-586 19-168 (208)
239 2oap_1 GSPE-2, type II secreti 99.2 6.2E-14 2.1E-18 154.8 -13.2 157 416-586 249-459 (511)
240 1nij_A Hypothetical protein YJ 99.2 7.1E-14 2.4E-18 145.8 -12.5 141 428-583 5-195 (318)
241 1sxj_E Activator 1 40 kDa subu 99.2 1.6E-11 5.6E-16 129.3 5.5 127 429-579 38-176 (354)
242 2qm8_A GTPase/ATPase; G protei 99.1 2.8E-13 9.7E-18 142.3 -8.8 63 87-149 29-91 (337)
243 1p9r_A General secretion pathw 99.1 5.5E-14 1.9E-18 151.4 -14.9 135 399-543 143-314 (418)
244 2yhs_A FTSY, cell division pro 99.1 3.7E-12 1.3E-16 138.3 -0.7 45 418-462 284-328 (503)
245 3e70_C DPA, signal recognition 99.1 4.7E-12 1.6E-16 132.1 -0.6 154 424-595 126-306 (328)
246 2qm8_A GTPase/ATPase; G protei 99.1 1.1E-12 3.8E-17 137.8 -6.1 160 400-566 30-258 (337)
247 2f1r_A Molybdopterin-guanine d 99.1 5E-13 1.7E-17 126.5 -8.0 130 428-565 3-158 (171)
248 1htw_A HI0065; nucleotide-bind 99.1 5E-12 1.7E-16 118.0 -1.1 59 402-463 10-68 (158)
249 1odf_A YGR205W, hypothetical 3 99.1 3.8E-12 1.3E-16 130.7 -2.6 122 426-555 30-169 (290)
250 3e70_C DPA, signal recognition 99.1 3.5E-11 1.2E-15 125.6 4.0 170 109-307 125-306 (328)
251 2oap_1 GSPE-2, type II secreti 99.1 1.2E-13 4.2E-18 152.5 -16.4 179 101-297 248-458 (511)
252 1sxj_E Activator 1 40 kDa subu 99.1 1.2E-10 4.2E-15 122.5 7.2 52 247-299 131-185 (354)
253 1ls1_A Signal recognition part 99.0 1.9E-10 6.5E-15 118.4 7.6 131 88-277 77-208 (295)
254 1lvg_A Guanylate kinase, GMP k 99.0 2E-13 7E-18 132.4 -14.0 146 425-591 2-172 (198)
255 3c8u_A Fructokinase; YP_612366 99.0 2.7E-12 9.2E-17 125.3 -6.1 57 231-298 110-168 (208)
256 1vma_A Cell division protein F 99.0 2.4E-10 8.3E-15 118.0 7.9 97 421-549 98-197 (306)
257 2rcn_A Probable GTPase ENGC; Y 99.0 6E-11 2E-15 124.7 3.3 121 103-247 206-328 (358)
258 2yhs_A FTSY, cell division pro 99.0 3.6E-11 1.2E-15 130.6 0.9 45 103-147 283-327 (503)
259 2px0_A Flagellar biosynthesis 99.0 4.3E-10 1.5E-14 115.7 8.7 135 425-596 103-245 (296)
260 2yv5_A YJEQ protein; hydrolase 99.0 6.4E-11 2.2E-15 122.4 1.0 108 424-533 162-300 (302)
261 2dr3_A UPF0273 protein PH0284; 99.0 2.3E-09 7.9E-14 106.4 12.3 56 249-304 127-196 (247)
262 2px0_A Flagellar biosynthesis 99.0 1.4E-09 4.9E-14 111.8 10.8 137 111-310 103-247 (296)
263 1vma_A Cell division protein F 99.0 1E-09 3.4E-14 113.4 9.7 99 105-261 96-197 (306)
264 1lvg_A Guanylate kinase, GMP k 99.0 5.9E-13 2E-17 129.1 -13.8 57 243-304 116-173 (198)
265 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 3E-12 1E-16 136.4 -10.4 151 423-602 16-208 (392)
266 1odf_A YGR205W, hypothetical 3 99.0 2E-11 6.9E-16 125.3 -4.1 40 228-267 130-169 (290)
267 1sq5_A Pantothenate kinase; P- 99.0 4.4E-12 1.5E-16 131.6 -9.3 58 399-460 37-115 (308)
268 2f1r_A Molybdopterin-guanine d 98.9 4.5E-12 1.6E-16 119.8 -8.8 34 114-147 3-39 (171)
269 3euj_A Chromosome partition pr 98.9 3.9E-10 1.3E-14 122.8 4.9 71 518-591 377-464 (483)
270 2x8a_A Nuclear valosin-contain 98.9 1.4E-11 4.9E-16 125.6 -6.7 149 99-277 32-192 (274)
271 2x8a_A Nuclear valosin-contain 98.9 1.9E-12 6.7E-17 132.0 -13.2 135 416-565 35-192 (274)
272 2dr3_A UPF0273 protein PH0284; 98.9 1E-08 3.5E-13 101.7 13.4 56 537-592 127-196 (247)
273 2r6a_A DNAB helicase, replicat 98.9 2.8E-09 9.7E-14 116.4 8.8 175 416-595 192-401 (454)
274 2ius_A DNA translocase FTSK; n 98.9 4.3E-10 1.5E-14 123.4 1.8 175 105-302 159-362 (512)
275 3euj_A Chromosome partition pr 98.9 6.6E-10 2.3E-14 121.1 3.3 48 100-148 17-64 (483)
276 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 2.8E-11 9.4E-16 129.0 -7.7 69 228-310 129-205 (392)
277 2r6a_A DNAB helicase, replicat 98.8 2.2E-09 7.5E-14 117.3 5.6 178 100-307 190-401 (454)
278 1in4_A RUVB, holliday junction 98.8 2.3E-11 7.8E-16 127.7 -10.5 172 88-298 19-211 (334)
279 1u0l_A Probable GTPase ENGC; p 98.8 3.7E-10 1.3E-14 116.6 -1.6 100 423-523 165-294 (301)
280 2ius_A DNA translocase FTSK; n 98.8 3.5E-10 1.2E-14 124.1 -2.6 167 419-589 159-361 (512)
281 1ypw_A Transitional endoplasmi 98.8 2.2E-09 7.5E-14 125.1 3.9 33 420-452 504-536 (806)
282 1in4_A RUVB, holliday junction 98.8 1.5E-11 5.2E-16 129.0 -13.6 162 400-586 19-211 (334)
283 1oix_A RAS-related protein RAB 98.7 1.3E-08 4.4E-13 97.4 7.7 37 527-565 152-188 (191)
284 2zr9_A Protein RECA, recombina 98.7 4.1E-08 1.4E-12 103.3 12.1 70 239-308 126-233 (349)
285 2yv5_A YJEQ protein; hydrolase 98.7 6.4E-10 2.2E-14 114.9 -3.6 127 109-245 161-300 (302)
286 1sq5_A Pantothenate kinase; P- 98.7 2.4E-10 8.3E-15 118.4 -6.8 59 87-147 37-116 (308)
287 1t9h_A YLOQ, probable GTPase E 98.7 8.9E-10 3E-14 113.6 -2.7 103 424-528 170-303 (307)
288 3lnc_A Guanylate kinase, GMP k 98.7 5.9E-09 2E-13 103.1 2.3 37 416-452 16-53 (231)
289 3lnc_A Guanylate kinase, GMP k 98.7 7.6E-09 2.6E-13 102.3 3.0 38 101-138 15-53 (231)
290 2zr9_A Protein RECA, recombina 98.6 1.4E-07 4.8E-12 99.2 11.9 138 423-595 57-232 (349)
291 1iy2_A ATP-dependent metallopr 98.6 2.2E-10 7.6E-15 116.8 -10.4 53 91-147 53-105 (278)
292 3nwj_A ATSK2; P loop, shikimat 98.6 3E-09 1E-13 106.6 -2.1 51 87-137 17-72 (250)
293 1ixz_A ATP-dependent metallopr 98.6 1.6E-10 5.6E-15 116.0 -12.0 53 91-147 29-81 (254)
294 3cmw_A Protein RECA, recombina 98.6 8.4E-06 2.9E-10 100.3 26.9 31 423-453 728-758 (1706)
295 2f9l_A RAB11B, member RAS onco 98.5 9.4E-08 3.2E-12 91.8 7.3 35 529-565 130-164 (199)
296 1qhl_A Protein (cell division 98.5 2E-09 6.9E-14 106.2 -4.9 55 399-463 9-63 (227)
297 1svm_A Large T antigen; AAA+ f 98.5 5.9E-10 2E-14 118.2 -9.6 130 416-549 158-312 (377)
298 1oix_A RAS-related protein RAB 98.5 7.5E-10 2.6E-14 106.1 -8.6 36 240-277 153-188 (191)
299 1qhl_A Protein (cell division 98.5 2.6E-09 8.8E-14 105.5 -5.1 54 87-148 9-62 (227)
300 1jjv_A Dephospho-COA kinase; P 98.5 4.8E-08 1.6E-12 94.5 3.3 126 429-592 4-132 (206)
301 1iy2_A ATP-dependent metallopr 98.5 2.8E-10 9.5E-15 116.0 -13.3 130 400-548 50-195 (278)
302 3k1j_A LON protease, ATP-depen 98.5 3.3E-08 1.1E-12 111.8 2.1 146 415-565 48-227 (604)
303 3nwj_A ATSK2; P loop, shikimat 98.5 9.6E-09 3.3E-13 103.0 -2.2 54 398-452 16-73 (250)
304 3k1j_A LON protease, ATP-depen 98.5 2.1E-08 7.1E-13 113.5 0.2 178 91-277 38-227 (604)
305 3tr0_A Guanylate kinase, GMP k 98.5 5.5E-08 1.9E-12 93.7 3.1 31 107-137 1-31 (205)
306 1jjv_A Dephospho-COA kinase; P 98.4 6.9E-08 2.3E-12 93.4 3.0 69 233-303 60-131 (206)
307 3tr0_A Guanylate kinase, GMP k 98.4 7.1E-08 2.4E-12 92.9 3.1 32 421-452 1-32 (205)
308 2xau_A PRE-mRNA-splicing facto 98.4 2E-07 6.9E-12 108.1 7.3 74 227-300 185-263 (773)
309 2xau_A PRE-mRNA-splicing facto 98.4 2.2E-07 7.4E-12 107.8 6.7 70 517-586 187-261 (773)
310 3kta_A Chromosome segregation 98.4 1.9E-07 6.4E-12 88.4 4.9 38 104-142 18-55 (182)
311 2qtf_A Protein HFLX, GTP-bindi 98.4 2.4E-07 8.1E-12 98.0 5.6 134 429-566 181-351 (364)
312 2ce7_A Cell division protein F 98.3 3.3E-07 1.1E-11 100.0 6.3 111 416-580 40-167 (476)
313 3kta_A Chromosome segregation 98.3 2.2E-07 7.6E-12 87.9 4.3 39 418-457 18-56 (182)
314 2ce7_A Cell division protein F 98.3 2.2E-07 7.7E-12 101.4 3.9 59 235-293 93-168 (476)
315 2e87_A Hypothetical protein PH 98.3 4.5E-07 1.6E-11 95.7 5.9 120 428-578 168-293 (357)
316 3a00_A Guanylate kinase, GMP k 98.3 2E-07 6.9E-12 88.8 2.2 28 427-454 1-28 (186)
317 3uie_A Adenylyl-sulfate kinase 98.3 5.5E-08 1.9E-12 93.9 -1.9 53 91-144 3-55 (200)
318 3a00_A Guanylate kinase, GMP k 98.3 2.9E-07 9.8E-12 87.7 2.7 27 113-139 1-27 (186)
319 2f9l_A RAB11B, member RAS onco 98.2 1.2E-08 4.1E-13 98.1 -7.2 35 241-277 130-164 (199)
320 2j41_A Guanylate kinase; GMP, 98.2 5.1E-07 1.7E-11 86.9 4.0 35 422-456 1-35 (207)
321 1u0l_A Probable GTPase ENGC; p 98.2 2.8E-07 9.6E-12 94.9 2.2 39 108-146 164-202 (301)
322 4a1f_A DNAB helicase, replicat 98.2 2.9E-06 9.8E-11 88.5 9.5 129 101-287 34-164 (338)
323 1fnn_A CDC6P, cell division co 98.2 5.5E-06 1.9E-10 87.6 11.7 49 249-298 124-178 (389)
324 1fnn_A CDC6P, cell division co 98.2 5.8E-06 2E-10 87.4 11.1 127 426-584 41-176 (389)
325 2j41_A Guanylate kinase; GMP, 98.2 6.2E-07 2.1E-11 86.3 3.3 33 108-140 1-33 (207)
326 2e87_A Hypothetical protein PH 98.1 6.8E-06 2.3E-10 86.6 10.4 62 228-290 227-293 (357)
327 1t9h_A YLOQ, probable GTPase E 98.1 3.4E-07 1.2E-11 94.2 -0.6 39 108-146 168-206 (307)
328 3uie_A Adenylyl-sulfate kinase 98.1 1.6E-07 5.3E-12 90.6 -3.4 57 403-462 3-61 (200)
329 2qtf_A Protein HFLX, GTP-bindi 98.1 4.5E-06 1.6E-10 88.1 7.3 63 211-277 280-350 (364)
330 3vaa_A Shikimate kinase, SK; s 98.1 1.6E-06 5.3E-11 83.5 3.4 38 100-137 12-49 (199)
331 3t34_A Dynamin-related protein 98.1 6.2E-06 2.1E-10 87.0 8.3 42 416-460 26-69 (360)
332 1kgd_A CASK, peripheral plasma 98.1 1.2E-06 4E-11 83.0 2.4 34 426-459 4-38 (180)
333 4a1f_A DNAB helicase, replicat 98.1 2.9E-06 1E-10 88.4 5.5 127 416-574 35-163 (338)
334 4e22_A Cytidylate kinase; P-lo 98.1 6.6E-07 2.2E-11 89.7 0.6 41 100-143 17-60 (252)
335 3tqc_A Pantothenate kinase; bi 98.0 1E-07 3.5E-12 98.8 -5.7 129 416-553 75-211 (321)
336 3hr8_A Protein RECA; alpha and 98.0 4E-05 1.4E-09 80.4 13.7 36 423-458 57-92 (356)
337 3hr8_A Protein RECA; alpha and 98.0 2.5E-05 8.4E-10 82.0 11.8 35 110-144 58-92 (356)
338 3cmu_A Protein RECA, recombina 98.0 0.00014 4.9E-09 90.6 20.1 30 423-452 379-408 (2050)
339 4eun_A Thermoresistant glucoki 98.0 1.8E-06 6.2E-11 83.1 2.7 40 419-462 21-60 (200)
340 3vaa_A Shikimate kinase, SK; s 98.0 2.5E-06 8.5E-11 82.0 3.4 37 415-451 13-49 (199)
341 4eun_A Thermoresistant glucoki 98.0 2.5E-06 8.7E-11 82.0 3.4 42 102-147 18-59 (200)
342 3tqc_A Pantothenate kinase; bi 98.0 2.2E-07 7.4E-12 96.4 -4.5 55 92-146 65-127 (321)
343 1kgd_A CASK, peripheral plasma 98.0 2.6E-06 9.1E-11 80.5 3.2 27 112-138 4-30 (180)
344 4e22_A Cytidylate kinase; P-lo 98.0 1.2E-06 4.3E-11 87.6 0.8 35 425-459 25-62 (252)
345 1v5w_A DMC1, meiotic recombina 98.0 2.9E-05 9.8E-10 81.4 11.2 28 109-136 118-145 (343)
346 2z43_A DNA repair and recombin 98.0 1.9E-05 6.4E-10 82.1 9.6 28 109-136 103-130 (324)
347 3kl4_A SRP54, signal recogniti 97.9 2.2E-05 7.6E-10 84.4 9.7 111 426-565 96-209 (433)
348 3bh0_A DNAB-like replicative h 97.9 2.2E-05 7.5E-10 81.2 8.9 53 233-287 134-189 (315)
349 3t34_A Dynamin-related protein 97.9 1.5E-05 5.1E-10 84.1 7.3 34 100-136 24-57 (360)
350 2qby_A CDC6 homolog 1, cell di 97.9 4E-06 1.4E-10 88.3 2.7 46 250-295 128-179 (386)
351 2qby_A CDC6 homolog 1, cell di 97.9 5.4E-06 1.8E-10 87.3 3.6 129 425-583 43-179 (386)
352 1v5w_A DMC1, meiotic recombina 97.9 4.8E-05 1.6E-09 79.6 10.5 28 423-450 118-145 (343)
353 3tau_A Guanylate kinase, GMP k 97.8 7.8E-06 2.7E-10 79.2 3.9 29 425-453 6-34 (208)
354 3tau_A Guanylate kinase, GMP k 97.8 7.8E-06 2.7E-10 79.2 3.9 29 111-139 6-34 (208)
355 1rz3_A Hypothetical protein rb 97.8 3.5E-06 1.2E-10 81.2 1.3 38 424-461 19-56 (201)
356 3kl4_A SRP54, signal recogniti 97.8 6.5E-05 2.2E-09 80.8 11.1 35 112-146 96-130 (433)
357 2z43_A DNA repair and recombin 97.8 6.2E-05 2.1E-09 78.1 10.6 28 423-450 103-130 (324)
358 2vp4_A Deoxynucleoside kinase; 97.8 5.4E-06 1.9E-10 81.7 2.4 38 421-462 14-51 (230)
359 2vp4_A Deoxynucleoside kinase; 97.8 4.4E-06 1.5E-10 82.3 1.7 39 106-148 13-51 (230)
360 4dcu_A GTP-binding protein ENG 97.8 9.6E-06 3.3E-10 88.4 4.5 57 236-292 88-144 (456)
361 2dy1_A Elongation factor G; tr 97.8 7E-06 2.4E-10 93.6 3.3 132 421-579 3-138 (665)
362 3ney_A 55 kDa erythrocyte memb 97.8 7.9E-06 2.7E-10 78.5 2.9 32 421-452 13-44 (197)
363 1svm_A Large T antigen; AAA+ f 97.8 3.3E-06 1.1E-10 89.4 0.2 36 101-136 157-192 (377)
364 1zu4_A FTSY; GTPase, signal re 97.8 4.1E-06 1.4E-10 86.9 0.4 45 417-461 95-139 (320)
365 1rz3_A Hypothetical protein rb 97.8 6.6E-06 2.3E-10 79.2 1.8 38 110-147 19-56 (201)
366 3ney_A 55 kDa erythrocyte memb 97.8 1.1E-05 3.9E-10 77.4 3.4 32 107-138 13-44 (197)
367 2ffh_A Protein (FFH); SRP54, s 97.7 4.2E-05 1.4E-09 82.1 8.1 54 90-147 79-132 (425)
368 1ega_A Protein (GTP-binding pr 97.7 5.7E-07 2E-11 92.6 -6.4 61 521-588 101-170 (301)
369 2z4s_A Chromosomal replication 97.7 1.8E-05 6.3E-10 85.7 4.7 41 249-289 193-237 (440)
370 1ixz_A ATP-dependent metallopr 97.7 4.9E-06 1.7E-10 83.0 -0.3 145 400-563 26-198 (254)
371 3cr8_A Sulfate adenylyltranfer 97.7 8.2E-06 2.8E-10 90.6 1.2 40 423-462 365-406 (552)
372 1knq_A Gluconate kinase; ALFA/ 97.7 1.3E-05 4.4E-10 75.0 2.3 34 425-462 6-39 (175)
373 3bh0_A DNAB-like replicative h 97.7 4.9E-05 1.7E-09 78.6 6.9 130 416-575 57-189 (315)
374 2p67_A LAO/AO transport system 97.7 6.8E-07 2.3E-11 93.7 -7.5 60 88-147 31-90 (341)
375 3b9p_A CG5977-PA, isoform A; A 97.6 0.00018 6.3E-09 73.1 10.7 57 234-290 97-170 (297)
376 2z4s_A Chromosomal replication 97.6 1.7E-05 6E-10 85.9 3.0 40 537-576 193-236 (440)
377 3lxx_A GTPase IMAP family memb 97.6 0.00018 6.2E-09 70.8 10.1 30 429-458 31-60 (239)
378 1zu4_A FTSY; GTPase, signal re 97.6 1E-05 3.5E-10 83.9 1.1 45 103-147 95-139 (320)
379 3lxx_A GTPase IMAP family memb 97.6 7.2E-05 2.5E-09 73.8 7.2 40 248-287 110-154 (239)
380 1kag_A SKI, shikimate kinase I 97.6 2E-05 6.9E-10 73.4 2.9 28 426-453 3-30 (173)
381 1kag_A SKI, shikimate kinase I 97.6 2E-05 6.7E-10 73.5 2.5 27 112-138 3-29 (173)
382 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 3.5E-05 1.2E-09 70.6 4.1 29 105-134 16-44 (149)
383 3b9p_A CG5977-PA, isoform A; A 97.6 0.00018 6.2E-09 73.2 9.7 101 426-578 53-170 (297)
384 3ice_A Transcription terminati 97.6 6.9E-06 2.4E-10 86.1 -1.3 52 399-451 133-198 (422)
385 1knq_A Gluconate kinase; ALFA/ 97.5 2.9E-05 1E-09 72.5 2.9 27 111-137 6-32 (175)
386 3ice_A Transcription terminati 97.5 9.7E-06 3.3E-10 85.0 -0.5 51 87-137 133-198 (422)
387 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 3.9E-05 1.3E-09 70.3 3.6 32 417-449 14-45 (149)
388 2dy1_A Elongation factor G; tr 97.5 5.9E-06 2E-10 94.2 -2.5 45 246-292 95-139 (665)
389 1u94_A RECA protein, recombina 97.5 0.0007 2.4E-08 71.0 13.1 26 110-135 60-85 (356)
390 3cr8_A Sulfate adenylyltranfer 97.5 2E-05 6.9E-10 87.5 1.0 37 109-145 365-402 (552)
391 2p67_A LAO/AO transport system 97.4 1.3E-05 4.4E-10 83.9 -2.0 45 416-460 45-89 (341)
392 1cke_A CK, MSSA, protein (cyti 97.4 2.1E-05 7.3E-10 76.7 -0.3 34 427-460 5-41 (227)
393 2qt1_A Nicotinamide riboside k 97.4 6.4E-05 2.2E-09 72.4 2.8 31 422-452 16-46 (207)
394 2qt1_A Nicotinamide riboside k 97.4 5.8E-05 2E-09 72.7 2.4 31 107-137 15-45 (207)
395 1u94_A RECA protein, recombina 97.3 0.0015 5.1E-08 68.5 13.1 29 423-451 59-87 (356)
396 4eaq_A DTMP kinase, thymidylat 97.3 7.9E-05 2.7E-09 73.3 3.0 42 417-459 13-57 (229)
397 1ypw_A Transitional endoplasmi 97.3 0.0001 3.4E-09 85.9 4.0 32 422-453 233-264 (806)
398 2pez_A Bifunctional 3'-phospho 97.3 6.9E-05 2.3E-09 70.4 1.9 31 425-456 3-33 (179)
399 3qks_A DNA double-strand break 97.3 0.00015 5.2E-09 69.9 4.1 29 105-134 16-44 (203)
400 1cke_A CK, MSSA, protein (cyti 97.3 3.6E-05 1.2E-09 75.0 -0.5 25 113-137 5-29 (227)
401 2www_A Methylmalonic aciduria 97.3 7.5E-05 2.6E-09 78.3 1.9 35 426-460 73-107 (349)
402 4eaq_A DTMP kinase, thymidylat 97.2 9.6E-05 3.3E-09 72.7 2.3 37 103-139 13-52 (229)
403 2qag_A Septin-2, protein NEDD5 97.2 2.3E-05 8E-10 82.6 -2.4 47 87-139 17-63 (361)
404 2i1q_A DNA repair and recombin 97.2 0.0023 7.8E-08 66.0 12.6 27 109-135 94-120 (322)
405 3cf0_A Transitional endoplasmi 97.2 0.00042 1.4E-08 70.9 6.4 29 109-137 45-73 (301)
406 3qks_A DNA double-strand break 97.2 0.00019 6.6E-09 69.1 3.6 31 417-448 14-44 (203)
407 3m6a_A ATP-dependent protease 97.1 5.3E-05 1.8E-09 84.3 -0.8 57 402-461 86-142 (543)
408 2www_A Methylmalonic aciduria 97.1 0.00014 4.8E-09 76.3 2.4 37 112-148 73-109 (349)
409 1m7g_A Adenylylsulfate kinase; 97.1 0.00011 3.7E-09 71.1 0.8 40 422-461 20-61 (211)
410 3cf0_A Transitional endoplasmi 97.1 0.00036 1.2E-08 71.4 4.7 29 423-451 45-73 (301)
411 1y63_A LMAJ004144AAA protein; 97.1 0.00025 8.4E-09 67.0 3.2 32 105-136 2-33 (184)
412 2pez_A Bifunctional 3'-phospho 97.0 0.00024 8.1E-09 66.6 2.9 29 111-139 3-31 (179)
413 3m6a_A ATP-dependent protease 97.0 1.2E-05 4E-10 89.7 -7.4 49 90-139 86-134 (543)
414 4fcw_A Chaperone protein CLPB; 97.0 0.00058 2E-08 69.7 5.7 29 114-142 48-76 (311)
415 1l8q_A Chromosomal replication 97.0 0.0014 4.8E-08 67.5 8.4 25 113-137 37-61 (324)
416 2if2_A Dephospho-COA kinase; a 97.0 0.00026 9E-09 67.7 2.7 21 115-135 3-23 (204)
417 2ffh_A Protein (FFH); SRP54, s 97.0 0.0002 6.7E-09 76.9 1.8 42 418-461 91-132 (425)
418 4fcw_A Chaperone protein CLPB; 97.0 0.00088 3E-08 68.3 6.6 31 428-458 48-78 (311)
419 2if2_A Dephospho-COA kinase; a 97.0 0.0003 1E-08 67.3 2.8 21 429-449 3-23 (204)
420 2qor_A Guanylate kinase; phosp 96.9 0.00035 1.2E-08 67.0 3.0 29 109-137 8-36 (204)
421 2i1q_A DNA repair and recombin 96.9 0.0028 9.5E-08 65.4 9.9 27 423-449 94-120 (322)
422 1y63_A LMAJ004144AAA protein; 96.9 0.00038 1.3E-08 65.7 3.0 32 419-450 2-33 (184)
423 2yvu_A Probable adenylyl-sulfa 96.9 0.00026 8.8E-09 66.8 1.8 36 423-458 9-44 (186)
424 1f6b_A SAR1; gtpases, N-termin 96.9 0.00014 4.8E-09 69.4 -0.0 42 406-449 6-47 (198)
425 1njg_A DNA polymerase III subu 96.9 0.00076 2.6E-08 65.2 5.1 41 537-578 125-167 (250)
426 2gj8_A MNME, tRNA modification 96.9 0.00054 1.8E-08 63.7 3.8 27 111-137 2-28 (172)
427 1m2o_B GTP-binding protein SAR 96.9 0.0006 2E-08 64.4 4.1 33 416-449 13-45 (190)
428 1j8m_F SRP54, signal recogniti 96.9 6.1E-05 2.1E-09 77.2 -3.2 55 90-147 77-132 (297)
429 1j8m_F SRP54, signal recogniti 96.9 0.00015 5E-09 74.3 -0.4 42 418-460 89-131 (297)
430 2ohf_A Protein OLA1, GTP-bindi 96.9 0.00056 1.9E-08 72.5 4.1 40 423-462 18-68 (396)
431 1sxj_C Activator 1 40 kDa subu 96.8 5.7E-05 2E-09 78.7 -3.7 48 92-139 23-72 (340)
432 2gj8_A MNME, tRNA modification 96.8 0.00056 1.9E-08 63.5 3.5 27 426-452 3-29 (172)
433 2q6t_A DNAB replication FORK h 96.8 0.0042 1.4E-07 67.1 10.9 55 231-287 263-318 (444)
434 1f6b_A SAR1; gtpases, N-termin 96.8 0.00013 4.4E-09 69.6 -1.2 42 94-136 6-48 (198)
435 1xp8_A RECA protein, recombina 96.8 0.01 3.5E-07 62.4 13.1 27 109-135 70-96 (366)
436 2dhr_A FTSH; AAA+ protein, hex 96.8 0.00025 8.4E-09 77.8 0.5 57 400-462 41-97 (499)
437 2qor_A Guanylate kinase; phosp 96.8 0.00063 2.2E-08 65.2 3.3 30 423-452 8-37 (204)
438 1l8q_A Chromosomal replication 96.8 0.001 3.5E-08 68.6 5.1 28 427-454 37-64 (324)
439 3llm_A ATP-dependent RNA helic 96.7 0.0022 7.4E-08 62.9 7.1 62 521-584 161-227 (235)
440 2dhr_A FTSH; AAA+ protein, hex 96.7 0.0002 6.9E-09 78.5 -0.5 45 99-147 52-96 (499)
441 1mky_A Probable GTP-binding pr 96.7 0.001 3.4E-08 71.9 5.0 35 429-463 182-228 (439)
442 2wji_A Ferrous iron transport 96.7 0.00098 3.4E-08 61.2 4.3 23 115-137 5-27 (165)
443 2q6t_A DNAB replication FORK h 96.7 0.0052 1.8E-07 66.4 10.6 128 416-575 189-318 (444)
444 2yvu_A Probable adenylyl-sulfa 96.7 0.00044 1.5E-08 65.2 1.9 36 109-144 9-44 (186)
445 3bos_A Putative DNA replicatio 96.7 0.00085 2.9E-08 65.2 3.9 91 426-576 51-147 (242)
446 1njg_A DNA polymerase III subu 96.7 0.001 3.5E-08 64.2 4.4 41 249-290 125-167 (250)
447 2ga8_A Hypothetical 39.9 kDa p 96.7 0.0002 6.7E-09 74.7 -1.1 36 102-137 11-48 (359)
448 1m2o_B GTP-binding protein SAR 96.7 0.00067 2.3E-08 64.1 2.7 35 101-136 12-46 (190)
449 2wji_A Ferrous iron transport 96.7 0.0011 3.7E-08 61.0 4.0 24 429-452 5-28 (165)
450 2zej_A Dardarin, leucine-rich 96.7 0.00093 3.2E-08 62.6 3.6 23 115-137 4-26 (184)
451 1m7g_A Adenylylsulfate kinase; 96.7 0.00027 9.3E-09 68.2 -0.2 34 109-142 21-54 (211)
452 2zej_A Dardarin, leucine-rich 96.6 0.00089 3E-08 62.7 3.3 27 429-455 4-30 (184)
453 1ega_A Protein (GTP-binding pr 96.6 0.00055 1.9E-08 70.1 1.9 61 233-300 101-170 (301)
454 2b8t_A Thymidine kinase; deoxy 96.6 0.0056 1.9E-07 59.7 8.6 52 250-303 89-150 (223)
455 2v1u_A Cell division control p 96.6 0.0015 5.1E-08 68.4 4.9 27 111-137 42-68 (387)
456 2v1u_A Cell division control p 96.6 0.002 6.8E-08 67.4 5.8 28 425-452 42-69 (387)
457 3h4m_A Proteasome-activating n 96.6 0.0035 1.2E-07 63.0 7.4 27 425-451 49-75 (285)
458 3t61_A Gluconokinase; PSI-biol 96.6 0.00087 3E-08 64.0 2.6 25 113-137 18-42 (202)
459 3cm0_A Adenylate kinase; ATP-b 96.5 0.00097 3.3E-08 62.5 2.9 25 111-135 2-26 (186)
460 2wjg_A FEOB, ferrous iron tran 96.5 0.0012 4.2E-08 61.6 3.6 22 429-450 9-30 (188)
461 1q3t_A Cytidylate kinase; nucl 96.5 0.0011 3.8E-08 65.1 3.3 27 110-136 13-39 (236)
462 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00027 9.4E-09 73.6 -1.1 37 416-452 11-49 (359)
463 2qag_A Septin-2, protein NEDD5 96.5 0.00016 5.5E-09 76.2 -3.0 51 399-457 17-67 (361)
464 3t61_A Gluconokinase; PSI-biol 96.5 0.00099 3.4E-08 63.6 2.7 25 427-451 18-42 (202)
465 1xp8_A RECA protein, recombina 96.5 0.022 7.7E-07 59.7 13.2 27 423-449 70-96 (366)
466 3cm0_A Adenylate kinase; ATP-b 96.4 0.0012 4.1E-08 61.9 2.9 26 425-450 2-27 (186)
467 2wjg_A FEOB, ferrous iron tran 96.4 0.0015 5E-08 61.0 3.4 22 115-136 9-30 (188)
468 3h4m_A Proteasome-activating n 96.4 0.0059 2E-07 61.3 8.1 27 111-137 49-75 (285)
469 1q3t_A Cytidylate kinase; nucl 96.4 0.0014 4.9E-08 64.3 3.4 27 424-450 13-39 (236)
470 2ohf_A Protein OLA1, GTP-bindi 96.4 0.0011 3.6E-08 70.4 2.5 28 109-136 18-45 (396)
471 4ag6_A VIRB4 ATPase, type IV s 96.4 0.0015 5.1E-08 69.3 3.5 35 426-460 34-68 (392)
472 3io5_A Recombination and repai 96.4 0.017 5.9E-07 59.1 11.0 56 235-290 92-173 (333)
473 1np6_A Molybdopterin-guanine d 96.3 0.00096 3.3E-08 62.6 1.4 27 428-454 7-33 (174)
474 1lv7_A FTSH; alpha/beta domain 96.3 0.0012 4E-08 65.7 2.0 33 103-137 37-69 (257)
475 1sxj_C Activator 1 40 kDa subu 96.3 0.00027 9.2E-09 73.6 -2.7 42 415-456 32-75 (340)
476 1mky_A Probable GTP-binding pr 96.3 0.0024 8.2E-08 68.9 4.3 24 115-138 182-205 (439)
477 3kb2_A SPBC2 prophage-derived 96.3 0.0022 7.4E-08 59.1 3.4 22 115-136 3-24 (173)
478 1sxj_D Activator 1 41 kDa subu 96.2 0.0017 5.8E-08 67.3 2.9 106 430-578 61-174 (353)
479 1np6_A Molybdopterin-guanine d 96.2 0.0021 7.1E-08 60.3 3.2 25 114-138 7-31 (174)
480 3dm5_A SRP54, signal recogniti 96.2 0.029 9.9E-07 60.2 12.4 29 426-454 99-127 (443)
481 3lxw_A GTPase IMAP family memb 96.2 0.01 3.5E-07 58.6 8.3 24 429-452 23-46 (247)
482 3bgw_A DNAB-like replicative h 96.2 0.011 3.9E-07 63.7 9.1 53 233-287 263-318 (444)
483 1lv7_A FTSH; alpha/beta domain 96.2 0.0015 5.2E-08 64.8 2.0 33 418-452 38-70 (257)
484 1qhx_A CPT, protein (chloramph 96.2 0.0028 9.5E-08 58.9 3.7 25 113-137 3-27 (178)
485 3kb2_A SPBC2 prophage-derived 96.2 0.0024 8.4E-08 58.7 3.2 23 429-451 3-25 (173)
486 3r20_A Cytidylate kinase; stru 96.1 0.0017 5.7E-08 63.9 1.9 25 427-451 9-33 (233)
487 1kht_A Adenylate kinase; phosp 96.0 0.0035 1.2E-07 58.7 3.7 23 113-135 3-25 (192)
488 3lw7_A Adenylate kinase relate 96.0 0.0032 1.1E-07 57.8 3.3 19 115-133 3-21 (179)
489 1qhx_A CPT, protein (chloramph 96.0 0.0036 1.2E-07 58.1 3.7 26 427-452 3-28 (178)
490 4ag6_A VIRB4 ATPase, type IV s 96.0 0.0027 9.1E-08 67.4 3.0 48 99-147 19-69 (392)
491 3dm5_A SRP54, signal recogniti 96.0 0.05 1.7E-06 58.3 12.8 27 112-138 99-125 (443)
492 2p5t_B PEZT; postsegregational 96.0 0.0023 7.9E-08 63.6 2.2 37 424-462 29-65 (253)
493 3r20_A Cytidylate kinase; stru 96.0 0.0035 1.2E-07 61.6 3.4 24 113-136 9-32 (233)
494 1via_A Shikimate kinase; struc 95.9 0.0031 1.1E-07 58.5 2.8 20 115-134 6-25 (175)
495 4dcu_A GTP-binding protein ENG 95.9 0.011 3.7E-07 64.1 7.4 57 524-580 88-144 (456)
496 2jaq_A Deoxyguanosine kinase; 95.9 0.004 1.4E-07 59.0 3.4 23 115-137 2-24 (205)
497 1kht_A Adenylate kinase; phosp 95.9 0.0043 1.5E-07 58.1 3.5 25 427-451 3-27 (192)
498 3lw7_A Adenylate kinase relate 95.9 0.0038 1.3E-07 57.2 3.1 19 429-447 3-21 (179)
499 1jal_A YCHF protein; nucleotid 95.9 0.0061 2.1E-07 63.9 4.9 36 427-462 2-48 (363)
500 1vht_A Dephospho-COA kinase; s 95.9 0.0039 1.3E-07 60.2 3.2 23 113-135 4-26 (218)
No 1
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.3e-77 Score=693.98 Aligned_cols=427 Identities=35% Similarity=0.606 Sum_probs=323.5
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCCceEEEeecccCCCCCcchhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV---PVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~---p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
..|...|++++|+++.+|+|+||+|++|+++||+||||||||||||+|+|... +..+.+.+.+..++...
T Consensus 434 ~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~------- 506 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDG------- 506 (986)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCC-------
T ss_pred ceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccc-------
Confidence 45888899999999999999999999999999999999999999999985211 11111111111111000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
.....+..+++. . .. .. . ..++.++|+.+||..+..++++.+|||||||||+
T Consensus 507 --------------------~~~~ltv~e~l~-~--~~--~~--~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRva 558 (986)
T 2iw3_A 507 --------------------THSDTSVLDFVF-E--SG--VG--T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLA 558 (986)
T ss_dssp --------------------CCTTSBHHHHHH-T--TC--SS--C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHH
T ss_pred --------------------cccCCcHHHHHH-H--hh--cC--H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHH
Confidence 000011111111 0 11 11 1 4678899999999656789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHHHHHHH
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRL 322 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~~~~~~ 322 (629)
|||||+.+|+||||||||||||+.++.+|+++|++.+.|||+||||++++..+||+|++|++|+++.+.|+++++.....
T Consensus 559 LArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~~ 638 (986)
T 2iw3_A 559 LARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCP 638 (986)
T ss_dssp HHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHCG
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhhhH
Confidence 99999999999999999999999999999999988788999999999999999999999999999866778776532100
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCC------CCC
Q psy10512 323 ELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCG------KIP 396 (629)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 396 (629)
. ...+ .. +.. . ...+.+|.++ ...
T Consensus 639 ~----------------------~~~~-~~-----------------l~~----~------~~~~~~p~~~~~~~~~~~~ 668 (986)
T 2iw3_A 639 A----------------------AKAY-EE-----------------LSN----T------DLEFKFPEPGYLEGVKTKQ 668 (986)
T ss_dssp G----------------------GGGS-SS-----------------TTT----C------CCCCCCCCCCCCTTCCSTT
T ss_pred H----------------------HHHH-Hh-----------------hhh----h------hhhccccccccccccccCC
Confidence 0 0000 00 000 0 0011122111 123
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcc
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHEL 476 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~ 476 (629)
.++|+++|++|.|++....+|+|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+++..+++|++|+....
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~ 748 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAH 748 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHH
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhh
Confidence 56899999999996422348999999999999999999999999999999999999999999999877899998874211
Q ss_pred c--CCCCCHHHHHhh-----------------------------------------------------------------
Q psy10512 477 L--DLDISPLDYMLQ----------------------------------------------------------------- 489 (629)
Q Consensus 477 ~--~~~~~~~~~~~~----------------------------------------------------------------- 489 (629)
+ ..+.++.+++..
T Consensus 749 l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~ 828 (986)
T 2iw3_A 749 IESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIG 828 (986)
T ss_dssp GGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTT
T ss_pred hhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhh
Confidence 0 011122211100
Q ss_pred -----------------------------------------cCCChhhHHHHHHHHHHcCCCCcc-cccCcCcCChhHHH
Q psy10512 490 -----------------------------------------SFPEVKDREEMRKIIGRYGLTGRQ-QVCPIRQLSDGQKC 527 (629)
Q Consensus 490 -----------------------------------------~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~LSgGqkq 527 (629)
+.......+++.++|+.|||.... .++++.+|||||||
T Consensus 829 l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQ 908 (986)
T 2iw3_A 829 MKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKV 908 (986)
T ss_dssp STTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHH
T ss_pred cccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHHH
Confidence 000011245678899999997543 35678999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 528 RVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 528 rv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
||+|||||+.+|+||||||||+|||+.+...+.+.|+++++|||+||||++++..+||++|+|++|+++.
T Consensus 909 RVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~ 978 (986)
T 2iw3_A 909 KLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTP 978 (986)
T ss_dssp HHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999998999999999999999999999999999864
No 2
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.2e-76 Score=658.77 Aligned_cols=446 Identities=17% Similarity=0.246 Sum_probs=315.9
Q ss_pred EEE-EeEEEEeCCe-eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 88 VKI-ANFSITFHGC-ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 88 i~i-~nls~~y~~~-~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
.++ +||+++|++. .+|+|+| +|++||++||+||||||||||||+|+|++.|+.|++.... . .....+.
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~-~--------~~~~~~~ 90 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSW-D--------GVIRAFR 90 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSH-H--------HHHHHTT
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcch-h--------hhHHhhC
Confidence 445 5999999886 4899999 9999999999999999999999999999999998731000 0 0000000
Q ss_pred hchHHHHHHHHHHHH--HhccCC-----h----hHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCC
Q psy10512 166 EVDEERVRLEKLAEQ--LVACED-----D----ESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFS 234 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~--~~~~~~-----~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 234 (629)
............... +..... + .+..++.. . ....+++.++|+.+||. ...++++.+||
T Consensus 91 g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~---~------~~~~~~~~~~l~~lgl~-~~~~~~~~~LS 160 (538)
T 1yqt_A 91 GNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLK---K------ADETGKLEEVVKALELE-NVLEREIQHLS 160 (538)
T ss_dssp TSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHH---H------HCSSSCHHHHHHHTTCT-TTTTSBGGGCC
T ss_pred CccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHh---h------hhHHHHHHHHHHHcCCC-hhhhCChhhCC
Confidence 000000000000000 000000 0 01111110 0 01123578899999997 56899999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEE--E
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLK--Y 309 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~--~ 309 (629)
|||||||+|||||+.+|+|||||||||+||+.++.+++++|+++ +.|||+||||++++..+||+|++|+++... .
T Consensus 161 gGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~~~~~~ 240 (538)
T 1yqt_A 161 GGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGI 240 (538)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCccccccc
Confidence 99999999999999999999999999999999999999988765 789999999999999999999999864321 1
Q ss_pred EcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEec
Q psy10512 310 YGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTF 389 (629)
Q Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 389 (629)
+..++..- +. +..+...... ... .. . ......+.+
T Consensus 241 ~~~~~~~~-----~~-----------------~~~~~~~~~~--------------------~~~-~~-~-~~~~~~~~~ 275 (538)
T 1yqt_A 241 FSQPKGTR-----NG-----------------INEFLRGYLK--------------------DEN-VR-F-RPYEIKFTK 275 (538)
T ss_dssp ECCCEEHH-----HH-----------------HHHHHHTEET--------------------TTT-EE-C-SSSCCCCCC
T ss_pred ccchhhHH-----HH-----------------HHHHhhhccc--------------------hhh-hc-c-ccccccccc
Confidence 11222210 00 0000000000 000 00 0 000001111
Q ss_pred cCCC--CCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEE
Q psy10512 390 PSCG--KIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFA 467 (629)
Q Consensus 390 ~~~~--~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~ 467 (629)
+... ....++++++|+++.|++ ..|+++||+|.+||++||+||||||||||+++|+|+++|++|+|.+ ...++
T Consensus 276 ~~~~~~~~~~~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--~~~i~ 350 (538)
T 1yqt_A 276 TGERVEIERETLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--DLTVA 350 (538)
T ss_dssp SSGGGSSCCCEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC--CCCEE
T ss_pred CCcccccCCCeEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--CceEE
Confidence 1111 123568999999999953 3699999999999999999999999999999999999999999987 34689
Q ss_pred eeccchhcccCCCCCHHHHHhhc-CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQS-FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 546 (629)
|++|+... ....|+.+++... .......+.+.++++.+|+.+ ...+++.+|||||||||+|||||+.+|+||||||
T Consensus 351 ~v~Q~~~~--~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDE 427 (538)
T 1yqt_A 351 YKPQYIKA--DYEGTVYELLSKIDASKLNSNFYKTELLKPLGIID-LYDREVNELSGGELQRVAIAATLLRDADIYLLDE 427 (538)
T ss_dssp EECSSCCC--CCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGG-GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred EEecCCcC--CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 99998642 3456776655321 011112456788999999974 4567889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeC--CEEEEecCCHHHHHH
Q psy10512 547 PTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICEN--GKVTKWEGNILDYKE 607 (629)
Q Consensus 547 PT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~ 607 (629)
||+|||+.++..++++|+++ +.|||+||||++++..+||||++|++ |++. ..|++++...
T Consensus 428 Pt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~-~~g~~~~~~~ 493 (538)
T 1yqt_A 428 PSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG-RALPPMGMRE 493 (538)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe-ecCCHHHHHh
Confidence 99999999999999998764 67999999999999999999999986 6665 4677766543
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.1e-74 Score=652.73 Aligned_cols=442 Identities=19% Similarity=0.264 Sum_probs=317.5
Q ss_pred EeEEEEeCCe-eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchH
Q psy10512 91 ANFSITFHGC-ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDE 169 (629)
Q Consensus 91 ~nls~~y~~~-~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 169 (629)
+||+++|++. .+|+++| +|++||++||+|||||||||||++|+|++.|+.|++.... ...+..+.....
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~---------~~~~~~~~G~~~ 164 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW---------DNVIRAFRGNEL 164 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCH---------HHHHHHTTTSTH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCcccccc---------chhhheeCCEeh
Confidence 8999999876 4999999 9999999999999999999999999999999998741100 000000000000
Q ss_pred HHHHHHHHHH-H--HhccCC---------hhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHH
Q psy10512 170 ERVRLEKLAE-Q--LVACED---------DESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGW 237 (629)
Q Consensus 170 ~~~~~~~~~~-~--~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 237 (629)
... ...... . +..... ..+..++.. . .....++.++|+.+||. +..++++.+|||||
T Consensus 165 ~~~-~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~------~---~~~~~~~~~~L~~lgL~-~~~~~~~~~LSGGe 233 (607)
T 3bk7_A 165 QNY-FERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLK------K---VDEVGKFEEVVKELELE-NVLDRELHQLSGGE 233 (607)
T ss_dssp HHH-HHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHH------H---TCCSSCHHHHHHHTTCT-TGGGSBGGGCCHHH
T ss_pred hhh-hhhhhhhhcceEEeechhhhchhhccccHHHHhh------h---hHHHHHHHHHHHHcCCC-chhCCChhhCCHHH
Confidence 000 000000 0 000000 001111111 0 01123577899999997 57899999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEE--EcC
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKY--YGG 312 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~--~~g 312 (629)
||||+|||||+.+|+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|+++...+ +..
T Consensus 234 kQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~ 313 (607)
T 3bk7_A 234 LQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSK 313 (607)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECC
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCccccceecc
Confidence 99999999999999999999999999999999999988765 7899999999999999999999998653211 111
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCC
Q psy10512 313 NYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSC 392 (629)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (629)
++... . .+..+...+... +.+ .. ......+.++..
T Consensus 314 ~~~~~----~------------------~i~~~~~~~~~~---------------~~~-------~~-~~~~~~~~~~~~ 348 (607)
T 3bk7_A 314 PKGTR----N------------------GINEFLQGYLKD---------------ENV-------RF-RPYEIRFTKLSE 348 (607)
T ss_dssp CEEHH----H------------------HHHHHHHTEETT---------------TTE-------EC-CSSCCCCCCSTT
T ss_pred chhHH----H------------------HHHHHHhhcchh---------------hhh-------hc-cccccccccCCC
Confidence 22110 0 000111100000 000 00 000111111111
Q ss_pred C--CCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeec
Q psy10512 393 G--KIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYH 470 (629)
Q Consensus 393 ~--~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~ 470 (629)
. ....++++++|+++.|++ . .|+++||+|.+||++||+||||||||||||+|+|+++|++|+|.+. ..++|++
T Consensus 349 ~~~~~~~~~l~~~~l~~~~~~--~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~--~~i~~v~ 423 (607)
T 3bk7_A 349 RVDVERETLVEYPRLVKDYGS--F-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--LTVAYKP 423 (607)
T ss_dssp SCCCCCCEEEEECCEEEECSS--C-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC--CCEEEEC
T ss_pred cccccCceEEEEeceEEEecc--e-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe--eEEEEEe
Confidence 1 123468999999999953 3 6999999999999999999999999999999999999999999873 4689999
Q ss_pred cchhcccCCCCCHHHHHhhc-CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy10512 471 QHLHELLDLDISPLDYMLQS-FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549 (629)
Q Consensus 471 q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~ 549 (629)
|+... ....|+.+++... .......+.+.++|+.+|+.+. .++++.+|||||||||+|||||+.+|+||||||||+
T Consensus 424 Q~~~~--~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~ 500 (607)
T 3bk7_A 424 QYIKA--EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL-YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSA 500 (607)
T ss_dssp SSCCC--CCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTT-TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred cCccC--CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchH-hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 98642 3556777665432 1111224567889999999754 456889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeC--CEEEEecCCHHHHHH
Q psy10512 550 HLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICEN--GKVTKWEGNILDYKE 607 (629)
Q Consensus 550 ~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~ 607 (629)
|||+.++..+.++|+++ +.|||+||||++++..+||||++|++ |.+. ..|++++...
T Consensus 501 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~-~~g~p~~~~~ 563 (607)
T 3bk7_A 501 YLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG-RALPPMGMRE 563 (607)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE-ecCCHHHHHh
Confidence 99999999999998765 67999999999999999999999985 6665 4677766543
No 4
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-72 Score=631.82 Aligned_cols=453 Identities=16% Similarity=0.225 Sum_probs=309.3
Q ss_pred eEEEEeCCe-eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHH
Q psy10512 92 NFSITFHGC-ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEE 170 (629)
Q Consensus 92 nls~~y~~~-~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 170 (629)
|++++|+.. ..|++++ ++++|+++||+||||||||||||+|+|++.|+.|++... ......+..+......
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~-------~~~~~~~~~~~g~~~~ 153 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDP-------PEWQEIIKYFRGSELQ 153 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCS-------SCHHHHHHHTTTSTHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecc-------cchhhhhheecChhhh
Confidence 467888754 3667666 689999999999999999999999999999999986310 0000001111111100
Q ss_pred HHHHHHHHHHHhc--cCCh-hHHHHH-----HHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 171 RVRLEKLAEQLVA--CEDD-ESQEQL-----MDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 171 ~~~~~~~~~~~~~--~~~~-~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
..........+.. .+.. ...... ..+...+. ........++.++++.+|+. ...++++.+|||||||||+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~-~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGe~Qrv~ 231 (608)
T 3j16_B 154 NYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLK-LRMEKSPEDVKRYIKILQLE-NVLKRDIEKLSGGELQRFA 231 (608)
T ss_dssp HHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHH-HHCCSCHHHHHHHHHHHTCT-GGGGSCTTTCCHHHHHHHH
T ss_pred hhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHh-hhhhhHHHHHHHHHHHcCCc-chhCCChHHCCHHHHHHHH
Confidence 0000000000000 0000 000000 00000000 00112235788999999997 5789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE--cCcHHHH
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY--GGNYEAF 317 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~--~g~~~~~ 317 (629)
|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|...+. ..++..
T Consensus 232 iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~~~~~~~~~~- 310 (608)
T 3j16_B 232 IGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASV- 310 (608)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEH-
T ss_pred HHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecCchhH-
Confidence 999999999999999999999999999999988765 68999999999999999999999987654321 111110
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCCCCC
Q psy10512 318 CKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPP 397 (629)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (629)
+ . ....+..+... .... .. ......+..+. ....
T Consensus 311 -~-------~-------------~~~~~~~~~~~--------------------~~~~--~~-~~~~~~~~~~~--~~~~ 344 (608)
T 3j16_B 311 -R-------E-------------GINIFLDGHIP--------------------AENL--RF-RTEALQFRIAD--ATED 344 (608)
T ss_dssp -H-------H-------------HHHHHHHTEET--------------------TTTE--EC-SSSCCCCCCSS--SSCC
T ss_pred -H-------H-------------HHHHhhccccc--------------------hhhh--cc-ccccccccccc--cccc
Confidence 0 0 00001110000 0000 00 00000111110 0011
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCC-----CEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccc
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLD-----TRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQH 472 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~G-----e~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~ 472 (629)
..+...++++.|+.. ..+++++||++.+| |++||+||||||||||+++|+|+++|++|+.. ....++|++|.
T Consensus 345 ~~~~~~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~--~~~~i~~~~q~ 421 (608)
T 3j16_B 345 LQNDSASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI--PKLNVSMKPQK 421 (608)
T ss_dssp CCCCSSSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC--CSCCEEEECSS
T ss_pred eeeeccceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc--cCCcEEEeccc
Confidence 122225678888542 23789999999999 78999999999999999999999999999842 23468899987
Q ss_pred hhcccCCCCCHHHHHhhcCCC-hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCC
Q psy10512 473 LHELLDLDISPLDYMLQSFPE-VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551 (629)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~L 551 (629)
... .+..++.+++...... ......+.++++.+++.+. .++++.+|||||||||+|||||+.+|+||||||||+||
T Consensus 422 ~~~--~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gL 498 (608)
T 3j16_B 422 IAP--KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYL 498 (608)
T ss_dssp CCC--CCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-SSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTC
T ss_pred ccc--cCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCC
Confidence 532 3345677665432221 1234567789999999865 45688999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeC--CEEEEecCCHHHHHHH
Q psy10512 552 DMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICEN--GKVTKWEGNILDYKET 608 (629)
Q Consensus 552 D~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~~ 608 (629)
|+.++..+.++|+++ +.|||+||||++++..+||||++|++ |++. ..|++++....
T Consensus 499 D~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~-~~g~p~~~~~~ 560 (608)
T 3j16_B 499 DSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNA-HARAPESLLTG 560 (608)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEE-ECCCCEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEE-ecCChHHHhhh
Confidence 999999999988765 67999999999999999999999996 7876 57887766554
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.1e-71 Score=620.66 Aligned_cols=448 Identities=17% Similarity=0.232 Sum_probs=305.5
Q ss_pred eEEEEeCCeeeeEeeeEEEe-CCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHH
Q psy10512 92 NFSITFHGCELLQDTMLELN-CGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEE 170 (629)
Q Consensus 92 nls~~y~~~~~L~~vsl~i~-~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 170 (629)
+.+.+||.. -|+-..|.+. +||++|||||||||||||||+|+|++.|+.|++.... ........+......
T Consensus 4 ~~~~~~~~~-~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~-------~~~~~~~~~~g~~i~ 75 (538)
T 3ozx_A 4 EVIHRYKVN-GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV-------GKDEVLKRFRGKEIY 75 (538)
T ss_dssp CEEEESSTT-SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCC-------CHHHHHHHHTTSTTH
T ss_pred CCceecCCC-ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcccccc-------chhhHHhhcCCeeHH
Confidence 456788642 3555556664 9999999999999999999999999999998762100 000000000000000
Q ss_pred HHHHHHHHH-HHh--ccC---C------hhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHH
Q psy10512 171 RVRLEKLAE-QLV--ACE---D------DESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWR 238 (629)
Q Consensus 171 ~~~~~~~~~-~~~--~~~---~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqr 238 (629)
. ....... ... ... . ..+...+ +. ......++.++++.+|+. ...++++.+||||||
T Consensus 76 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------l~---~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~ 144 (538)
T 3ozx_A 76 N-YFKELYSNELKIVHKIQYVEYASKFLKGTVNEI------LT---KIDERGKKDEVKELLNMT-NLWNKDANILSGGGL 144 (538)
T ss_dssp H-HHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHH------HH---HHCCSSCHHHHHHHTTCG-GGTTSBGGGCCHHHH
T ss_pred H-HHHHHhhcccchhhccchhhhhhhhccCcHHHH------hh---cchhHHHHHHHHHHcCCc-hhhcCChhhCCHHHH
Confidence 0 0000000 000 000 0 0000000 00 001123577899999996 578999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEE--EcCcH
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKY--YGGNY 314 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~--~~g~~ 314 (629)
|||+|||||+.+|+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|...+ +..++
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~ 224 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSY 224 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCcccccccchhh
Confidence 9999999999999999999999999999999999998876 7899999999999999999999998654321 11122
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCC
Q psy10512 315 EAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGK 394 (629)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (629)
.. . ..+..+...+.... .+........... ... .......
T Consensus 225 ~~--~--------------------~~~~~~~~g~~~~~---------------~~~~r~~~~~~~~-~~~--~~~~~~~ 264 (538)
T 3ozx_A 225 AA--R--------------------VGINNFLKGYLPAE---------------NMKIRPDEIKFML-KEV--SDLDLSK 264 (538)
T ss_dssp EH--H--------------------HHHHHHHHTEETTT---------------TEECSSSCCCCSC-C-----------
T ss_pred hH--H--------------------HHHHHHHhhhchhh---------------hhhccchhhhccc-ccc--ccccccc
Confidence 10 0 00011111100000 0000000000000 000 0000001
Q ss_pred CCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchh
Q psy10512 395 IPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLH 474 (629)
Q Consensus 395 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~ 474 (629)
...++++++++++.|++ ..|..+||+|++||++||+||||||||||+++|+|+++|++|+|.+.+ ..++|++|...
T Consensus 265 ~~~~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-~~i~~~~q~~~ 340 (538)
T 3ozx_A 265 DLKTKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK-QILSYKPQRIF 340 (538)
T ss_dssp -CCEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-CCEEEECSSCC
T ss_pred cccceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-eeeEeechhcc
Confidence 23468999999999953 368889999999999999999999999999999999999999998765 46889988753
Q ss_pred cccCCCCCHHHHHhhcCCCh--hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy10512 475 ELLDLDISPLDYMLQSFPEV--KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD 552 (629)
. ....++.+++....... .....+.++++.+|+... .++++.+|||||||||+|||||+.+|+||||||||+|||
T Consensus 341 ~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD 417 (538)
T 3ozx_A 341 P--NYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRL-LESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417 (538)
T ss_dssp C--CCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGC-TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred c--ccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHH-hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 2 34567777654321111 223457788999999754 456889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeC--CEEEEecCCHHHHH
Q psy10512 553 METIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICEN--GKVTKWEGNILDYK 606 (629)
Q Consensus 553 ~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~ 606 (629)
+.++..++++|+++ +.|||+||||++++..+||||++|++ |.+. ..+++.+..
T Consensus 418 ~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~-~~~~~~~~~ 476 (538)
T 3ozx_A 418 VEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG-LATSPVTLK 476 (538)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceec-cCCChHHHH
Confidence 99999999998765 56899999999999999999999986 4443 344444433
No 6
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.4e-69 Score=657.54 Aligned_cols=205 Identities=26% Similarity=0.324 Sum_probs=168.0
Q ss_pred CeEEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------ee
Q psy10512 398 PVIMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 465 (629)
..|+++||+|+|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 359999999999642 124899999999999999999999999999999999999999999999873 35
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcCCC-hhhHHHHHHHHHHcCCCCcccc----------cCcCcCChhHHHHHHHHHH
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSFPE-VKDREEMRKIIGRYGLTGRQQV----------CPIRQLSDGQKCRVVFAYL 534 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAra 534 (629)
++|++|++. .++.|+.+++....+. ....+++.+.++..++.+.... ....+|||||||||+||||
T Consensus 1109 i~~v~Q~~~---l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1109 LGIVSQEPI---LFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp CEEEESSCC---CCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred eEEECCCCc---cccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 899999863 2456888888654321 1234556666666655322111 1235899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 535 l~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|+.+|+||||||||+|||+.+...+.+.|++. +.|||+||||++++.. ||||++|++|+|++ .|+++++.+
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~-~g~~~~l~~ 1258 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKE-HGTHQQLLA 1258 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEEE-EECHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999999876 4699999999999955 99999999999985 688877654
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.2e-66 Score=598.70 Aligned_cols=441 Identities=22% Similarity=0.270 Sum_probs=268.8
Q ss_pred CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHH---------------------HHHhCCCCCCCCceEE-----Eeeccc
Q psy10512 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLL---------------------AVLGNREVPVPDHIDI-----FHLTRE 152 (629)
Q Consensus 99 ~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLl---------------------k~L~g~~~p~~g~i~i-----~~~~~~ 152 (629)
...+|+||||+|++||++|||||||||||||+ ++++|+..|+.|.+.. ...+..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 8888888887554421 111111
Q ss_pred CCCCCcchhhhhhhchHHH----HHHHHHHH--HHhccCChhHHHHHHHHHhhhh--ccCh-------hhHHHHHHHHHH
Q psy10512 153 MPASDKSALTCVMEVDEER----VRLEKLAE--QLVACEDDESQEQLMDIYDRLD--DISA-------DTAEARAANILH 217 (629)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~--~~~~-------~~~~~~~~~~L~ 217 (629)
........+..+.+..... .......+ ....+...+..++ ..++..+. .... .+.. ....+|+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 187 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEA-LAFFDGLELTEKEAQIARLILREIR-DRLGFLQ 187 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CH-HHHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHH-HHHhhccccchhhhHHHHHHHHHHH-HHHHHHH
Confidence 1111111122222111100 00000000 0000000011111 11110000 0000 0011 1224688
Q ss_pred hCCCCchhhhcccCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHH
Q psy10512 218 GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH--LLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFL 292 (629)
Q Consensus 218 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l 292 (629)
.+||.....++++.+|||||||||+|||||+.+|+ ||||||||+|||+.++.+|+++|+++ +.|||+||||++++
T Consensus 188 ~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 267 (670)
T 3ux8_A 188 NVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTM 267 (670)
T ss_dssp HTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred HcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 99997544689999999999999999999999998 99999999999999999999988654 68999999999987
Q ss_pred HhhcceeEEE------cCCeEEEEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy10512 293 NGVCTNIIHL------DKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKT 366 (629)
Q Consensus 293 ~~~~d~ii~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (629)
. .||+|++| ++|++++.+.+.+.+... ..+.
T Consensus 268 ~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~---------------------------------~~~~--------- 304 (670)
T 3ux8_A 268 L-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDP---------------------------------NSLT--------- 304 (670)
T ss_dssp H-HCSEEEEECSSSGGGCCSEEEEECHHHHHTCT---------------------------------TCHH---------
T ss_pred h-hCCEEEEecccccccCCEEEEecCHHHHhcCc---------------------------------hhHH---------
Confidence 6 59999999 899999876443221100 0000
Q ss_pred HHHHhhcCCCcccccCcceEEeccC-CCCCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHH
Q psy10512 367 LAKMVNQGLTDKVTTDKTVTFTFPS-CGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLN 445 (629)
Q Consensus 367 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk 445 (629)
..........+ .+. ........+.+.+.+ ..+|+||||+|++||++||+||||||||||++
T Consensus 305 -~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-------~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~ 366 (670)
T 3ux8_A 305 -GQYLSGKKFIP----------IPAERRRPDGRWLEVVGAR-------EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVN 366 (670)
T ss_dssp -HHHHTTSSCCC----------CCSSCCCCCSCEEEEEEEC-------STTCCSEEEEEETTSEEEEECSTTSSHHHHHT
T ss_pred -HHHhccccccc----------cccccccccccceeecCcc-------ccccccceeEecCCCEEEEEeeCCCCHHHHHH
Confidence 00000000000 000 001112345554432 23799999999999999999999999999998
Q ss_pred HHH----------------------cCCCCCccEEEECCcee-----------E--------------------------
Q psy10512 446 LIY----------------------GDLTPSVGMVRKNSHLR-----------F-------------------------- 466 (629)
Q Consensus 446 ~l~----------------------G~~~p~~G~i~~~~~~~-----------~-------------------------- 466 (629)
+|+ |+..+ .|.|.+++... .
T Consensus 367 ~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (670)
T 3ux8_A 367 EVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRF 445 (670)
T ss_dssp TTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGG
T ss_pred HHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccc
Confidence 764 33322 23454433110 0
Q ss_pred ---------------Eeeccchhcc------------------------------cCCCCCHHHHHhhcCCChhhHHHHH
Q psy10512 467 ---------------ARYHQHLHEL------------------------------LDLDISPLDYMLQSFPEVKDREEMR 501 (629)
Q Consensus 467 ---------------~~~~q~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (629)
+++.+..... ....+++.+++.... ......+..
T Consensus 446 ~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~-~~~~~~~~~ 524 (670)
T 3ux8_A 446 SFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA-SIPKIKRKL 524 (670)
T ss_dssp CTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTTBCHHHHHTSBHHHHHHHTT-TCHHHHHHH
T ss_pred cccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecCCCHHHHhhCCHHHHHHHHH-HhhhHHHHH
Confidence 0000000000 000123333332211 112234566
Q ss_pred HHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC---EEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEec
Q psy10512 502 KIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH---LLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSH 575 (629)
Q Consensus 502 ~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~---lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsH 575 (629)
+.+..+|+......+++.+|||||||||+|||||+.+|+ ||||||||+|||+.++..++++|+++ +.|||+|||
T Consensus 525 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtH 604 (670)
T 3ux8_A 525 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH 604 (670)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 788899997554567889999999999999999998875 99999999999999999999998765 579999999
Q ss_pred CHHHHHhhcCEEEEE------eCCEEEEecCCHHHHH
Q psy10512 576 DFRLINQVAEEIWIC------ENGKVTKWEGNILDYK 606 (629)
Q Consensus 576 d~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 606 (629)
|++++ ..||||++| ++|+|+ +.|+++++.
T Consensus 605 d~~~~-~~~d~i~~l~~~~g~~~G~i~-~~g~~~~~~ 639 (670)
T 3ux8_A 605 NLDVI-KTADYIIDLGPEGGDRGGQIV-AVGTPEEVA 639 (670)
T ss_dssp CHHHH-TTCSEEEEEESSSGGGCCEEE-EEECHHHHH
T ss_pred CHHHH-HhCCEEEEecCCcCCCCCEEE-EecCHHHHH
Confidence 99988 469999999 899997 578887754
No 8
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.6e-64 Score=616.51 Aligned_cols=204 Identities=25% Similarity=0.346 Sum_probs=172.4
Q ss_pred eEEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 399 VIMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 399 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
-|+++||+|+|+.+ ..++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.++|. ..+
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 59999999999643 224899999999999999999999999999999999999999999999983 368
Q ss_pred EeeccchhcccCCCCCHHHHHhhcC-CChhhHHHHHHHHHHcCCCCccc------ccC----cCcCChhHHHHHHHHHHH
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSF-PEVKDREEMRKIIGRYGLTGRQQ------VCP----IRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~------~~~----~~~LSgGqkqrv~lAral 535 (629)
++++|++. -++-|+.+++..+. +.....+++.++++..++.+... +.+ ...||||||||++|||||
T Consensus 1156 ~~V~Qdp~---LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1156 AIVSQEPT---LFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp EEECSSCC---CCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred EEECCCCE---eeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 99999864 34568899886543 23345677888888887743211 112 247999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+++|+||||||||++||+++-..+.+.|++. +.|+|+|+|.++.+.. ||+|+||++|+|++ .|+++++.+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE-~Gth~eLl~ 1304 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIE-KGTHTQLMS 1304 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEE-EECHHHHHH
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999999886 5799999999999964 99999999999986 689888754
No 9
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=2.1e-54 Score=499.01 Aligned_cols=333 Identities=19% Similarity=0.241 Sum_probs=237.9
Q ss_pred HHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHh---hcCCEE
Q psy10512 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH--LLLLDEPTNHLDLDACVWLEEELK---TYKRIL 282 (629)
Q Consensus 208 ~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--iLLLDEPT~~LD~~~~~~l~~~L~---~~~~tv 282 (629)
+..++. .|..+||.....++++.+|||||+|||+||++|+.+|+ ||||||||++||+..+.+|++.|+ +.+.||
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TV 434 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL 434 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEE
Confidence 344554 68899996333689999999999999999999999994 999999999999999999998664 458899
Q ss_pred EEEecCHHHHHhhcceeEEE------cCCeEEEEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHH
Q psy10512 283 VIISHSQDFLNGVCTNIIHL------DKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKL 356 (629)
Q Consensus 283 IivsHd~~~l~~~~d~ii~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (629)
|+||||++++. .||+|++| ++|++++. |+++.+....... ...+
T Consensus 435 IvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv~~-g~~~~~~~~~~~~-----------------~~~~----------- 484 (842)
T 2vf7_A 435 FVVEHDLDVIR-RADWLVDVGPEAGEKGGEILYS-GPPEGLKHVPESQ-----------------TGQY----------- 484 (842)
T ss_dssp EEECCCHHHHT-TCSEEEEECSSSGGGCCSEEEE-ECGGGGGGCTTCH-----------------HHHH-----------
T ss_pred EEEcCCHHHHH-hCCEEEEeCCCcccCCCEEEEe-cCHHHHHhchHHH-----------------HHHH-----------
Confidence 99999999775 79999999 78888865 5555443210000 0000
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCCCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCC
Q psy10512 357 ARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPN 436 (629)
Q Consensus 357 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~N 436 (629)
+... .... +.....+.++|+++|+++ . +|+||||+|+.|+++||+|+|
T Consensus 485 -------------l~~~---~~~~---------~~~~~~~~~~L~v~~l~~------~-~L~~vsl~i~~Geiv~I~G~n 532 (842)
T 2vf7_A 485 -------------LFAD---RHTE---------PHTPREPAGWLELNGVTR------N-NLDNLDVRFPLGVMTSVTGVS 532 (842)
T ss_dssp -------------HHTC---CCCC---------CCCCCCCSCEEEEEEEEE------T-TEEEEEEEEESSSEEEEECCT
T ss_pred -------------hhhc---cccc---------ccccCCCCceEEEEeeee------c-ccccceEEEcCCCEEEEEcCC
Confidence 1110 0000 000112356899999985 1 499999999999999999999
Q ss_pred CCchHHHHHH-HHcCC-------CCC------------------cc-------EEEECCcee------------------
Q psy10512 437 GAGKSTLLNL-IYGDL-------TPS------------------VG-------MVRKNSHLR------------------ 465 (629)
Q Consensus 437 GsGKSTLlk~-l~G~~-------~p~------------------~G-------~i~~~~~~~------------------ 465 (629)
|||||||+++ |+|++ +|+ .| .|.+++...
T Consensus 533 GSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~i 612 (842)
T 2vf7_A 533 GSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQV 612 (842)
T ss_dssp TSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHH
Confidence 9999999996 77554 343 44 344443110
Q ss_pred ------------EEeeccchhcc--------------------cC------------------------C--------CC
Q psy10512 466 ------------FARYHQHLHEL--------------------LD------------------------L--------DI 481 (629)
Q Consensus 466 ------------~~~~~q~~~~~--------------------~~------------------------~--------~~ 481 (629)
.+|..+.+..+ +. . .+
T Consensus 613 r~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~l 692 (842)
T 2vf7_A 613 RKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLAL 692 (842)
T ss_dssp HHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTC
T ss_pred HHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhc
Confidence 00000000000 00 0 01
Q ss_pred CHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHH
Q psy10512 482 SPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA---PHLLLLDEPTNHLDMETIDA 558 (629)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~---p~lLlLDEPT~~LD~~~~~~ 558 (629)
++.+.+. .+......+++.++|+.+||......+++.+|||||||||+||++|+.+ |+||||||||+|||+.++..
T Consensus 693 tv~e~l~-~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~ 771 (842)
T 2vf7_A 693 TVDEAHD-FFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVER 771 (842)
T ss_dssp BHHHHHH-HTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHH
T ss_pred cHHHHHH-HhhcchHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 1111111 1111122346788999999976444678899999999999999999996 79999999999999999999
Q ss_pred HHHHHhhc---CceEEEEecCHHHHHhhcCEEEEE------eCCEEEEecCCHHHHH
Q psy10512 559 LADAINDF---EGGLVLVSHDFRLINQVAEEIWIC------ENGKVTKWEGNILDYK 606 (629)
Q Consensus 559 l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 606 (629)
|+++|.++ +.|||+||||++++ .+||+|++| ++|+|+ +.|+++++.
T Consensus 772 l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el~ 826 (842)
T 2vf7_A 772 LQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEVA 826 (842)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEE-EEECHHHHT
T ss_pred HHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHHH
Confidence 99988765 67999999999999 789999999 689997 578887764
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6e-51 Score=473.82 Aligned_cols=334 Identities=20% Similarity=0.312 Sum_probs=234.1
Q ss_pred HHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEE
Q psy10512 211 RAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH--LLLLDEPTNHLDLDACVWLEEELKTY---KRILVII 285 (629)
Q Consensus 211 ~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIiv 285 (629)
...+.|..+||.....++++.+|||||+|||+|||||+++|+ ||||||||+|||+..+.+|++.|+++ |.|||+|
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 345678899996434689999999999999999999999887 99999999999999999999998766 5799999
Q ss_pred ecCHHHHHhhcceeEEE------cCCeEEEEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHH
Q psy10512 286 SHSQDFLNGVCTNIIHL------DKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQ 359 (629)
Q Consensus 286 sHd~~~l~~~~d~ii~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (629)
|||++++.. ||+|++| ++|++++.| +++++..... ... ..
T Consensus 523 tHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G-~~~e~~~~~~-----------------------------~~~--~~- 568 (916)
T 3pih_A 523 EHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQG-TVDELLKNPD-----------------------------SSL--TG- 568 (916)
T ss_dssp CCCHHHHHT-CSEEEEEESSSGGGCSEEEEEE-CHHHHHHSCT-----------------------------TCH--HH-
T ss_pred eCCHHHHHh-CCEEEEEcCCcccCCCEEEEee-chhhhhcCch-----------------------------hcc--hh-
Confidence 999999875 9999999 899998764 5444321100 000 00
Q ss_pred HHHHHHHHHHHhhcCCCcccccCcceEEeccCCCCCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCc
Q psy10512 360 AQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAG 439 (629)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsG 439 (629)
..+.. .... ..+.....+...+.+++++ .. .|+||||+|+.|+++||+|+||||
T Consensus 569 --------~~l~~---~~~~--------~~~~~~~~~~~~l~v~~~~------~~-~Lk~Vsl~I~~Geiv~I~G~SGSG 622 (916)
T 3pih_A 569 --------EYLSG---KRKI--------TVNKTRRLPYASLKIKGVR------HN-NLKNIDVEIPLGVFVCVTGVSGSG 622 (916)
T ss_dssp --------HHHHS---SSCC--------CCCSSCCCCSSEEEEEEEC------ST-TCCSEEEEEESSSEEEEECSTTSS
T ss_pred --------hhhhc---cccc--------ccccccccccceEEEeeec------cc-cccccceEEcCCcEEEEEccCCCC
Confidence 00001 0000 0111111123356666654 12 599999999999999999999999
Q ss_pred hHHHH---------HHHHcCCCCCccE------------EEECCce----------------------------------
Q psy10512 440 KSTLL---------NLIYGDLTPSVGM------------VRKNSHL---------------------------------- 464 (629)
Q Consensus 440 KSTLl---------k~l~G~~~p~~G~------------i~~~~~~---------------------------------- 464 (629)
||||+ +++.|...+..+. +..+...
T Consensus 623 KSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~ 702 (916)
T 3pih_A 623 KSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGY 702 (916)
T ss_dssp HHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSC
T ss_pred hhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccchhhhHHHHHHHhccchHHHhccc
Confidence 99997 4555544443321 1111100
Q ss_pred ------------------eEEeeccchhccc------------------------------CCCCCHHHHHhhcCCChhh
Q psy10512 465 ------------------RFARYHQHLHELL------------------------------DLDISPLDYMLQSFPEVKD 496 (629)
Q Consensus 465 ------------------~~~~~~q~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 496 (629)
..|++.+.+.... ...+++.+.+. .+.....
T Consensus 703 ~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~-f~~~~~~ 781 (916)
T 3pih_A 703 NKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALE-FFKNIPS 781 (916)
T ss_dssp CGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHH-HTTTCHH
T ss_pred ccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccCCHHHHhhCCHHHHHH-HHhcchh
Confidence 0001100000000 00112222111 1111122
Q ss_pred HHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CceE
Q psy10512 497 REEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP---HLLLLDEPTNHLDMETIDALADAINDF---EGGL 570 (629)
Q Consensus 497 ~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~v 570 (629)
..++.++|+.+||......+++.+|||||||||+|||+|+.+| +||||||||+|||+.++..|++.|+++ +.||
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV 861 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV 861 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 3566788999999765556788999999999999999999876 699999999999999999999998765 6799
Q ss_pred EEEecCHHHHHhhcCEEEEE------eCCEEEEecCCHHHHHH
Q psy10512 571 VLVSHDFRLINQVAEEIWIC------ENGKVTKWEGNILDYKE 607 (629)
Q Consensus 571 i~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 607 (629)
|+||||++++.. ||+|++| ++|+|+ +.|+++++.+
T Consensus 862 IvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv-~~Gtpeel~~ 902 (916)
T 3pih_A 862 IVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIV-ATGTPEEIAK 902 (916)
T ss_dssp EEECCCHHHHTT-CSEEEEEESSSGGGCCEEE-EEESHHHHHS
T ss_pred EEEeCCHHHHHh-CCEEEEecCCCCCCCCEEE-EEcCHHHHHh
Confidence 999999999865 9999999 899997 5799877643
No 11
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.4e-50 Score=468.62 Aligned_cols=336 Identities=21% Similarity=0.260 Sum_probs=234.8
Q ss_pred HHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEE
Q psy10512 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVK--PHLLLLDEPTNHLDLDACVWLEEELKT---YKRILV 283 (629)
Q Consensus 209 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~--P~iLLLDEPT~~LD~~~~~~l~~~L~~---~~~tvI 283 (629)
..++ +.|..+||..-..++++.+|||||+|||+||++|..+ |+||||||||++||+....+|++.|++ .|.|||
T Consensus 499 ~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVI 577 (993)
T 2ygr_A 499 RSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLI 577 (993)
T ss_dssp HHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 3444 4578899853236899999999999999999999998 589999999999999999999987654 578999
Q ss_pred EEecCHHHHHhhcceeEEE------cCCeEEEEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHH
Q psy10512 284 IISHSQDFLNGVCTNIIHL------DKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLA 357 (629)
Q Consensus 284 ivsHd~~~l~~~~d~ii~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (629)
+||||++++. .||+|++| ++|++++. |+++.+....... .
T Consensus 578 vVeHdl~~i~-~ADrIi~Lgp~aG~~gG~iv~~-G~~~e~~~~~~~l--------------------------------t 623 (993)
T 2ygr_A 578 VVEHDEDTIE-HADWIVDIGPGAGEHGGRIVHS-GPYDELLRNKDSI--------------------------------T 623 (993)
T ss_dssp EECCCHHHHH-TCSEEEEECSSSGGGCCSCCEE-ECHHHHHHCTTCH--------------------------------H
T ss_pred EECCCHHHHH-hCCEEEEecCccccCCCEEEEe-eCHHHhhhhhHHH--------------------------------H
Confidence 9999999986 79999999 68888865 5666543310000 0
Q ss_pred HHHHHHHHHHHHHhhcCCCcccccCcceEEeccCCCCCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCC
Q psy10512 358 RQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNG 437 (629)
Q Consensus 358 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NG 437 (629)
. ..|...... ..+.. .......++|++++++. . +|+||||+|+.|+++||+|+||
T Consensus 624 ~---------~~l~g~~~~-~~~~~--------~~~~~~~~~L~v~~l~~------~-~Lk~Vsl~I~~GeivaI~G~nG 678 (993)
T 2ygr_A 624 G---------AYLSGRESI-EIPAI--------RRSVDPRRQLTVVGARE------H-NLRGIDVSFPLGVLTSVTGVSG 678 (993)
T ss_dssp H---------HHHHTSSCC-CCCSS--------CCCCCSSSEEEEEEECS------T-TCCSEEEEEESSSEEEEECSTT
T ss_pred H---------HHhccCccc-cCccc--------cccCCCCceEEEecCcc------c-cccCceEEECCCCEEEEEcCCC
Confidence 0 001110000 00000 00011136899999862 2 5999999999999999999999
Q ss_pred CchHHHHHHHH-cC----CC---CCccEE-EECCc---eeE---------------------------------------
Q psy10512 438 AGKSTLLNLIY-GD----LT---PSVGMV-RKNSH---LRF--------------------------------------- 466 (629)
Q Consensus 438 sGKSTLlk~l~-G~----~~---p~~G~i-~~~~~---~~~--------------------------------------- 466 (629)
||||||+++|+ |. +. +..|.+ .+.|. .++
T Consensus 679 SGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~ 758 (993)
T 2ygr_A 679 SGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVR 758 (993)
T ss_dssp SSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHh
Confidence 99999999853 32 22 234543 22220 001
Q ss_pred Eeeccchhcc--------------------cCC--------------------------------CCCHHHHHhhcCCCh
Q psy10512 467 ARYHQHLHEL--------------------LDL--------------------------------DISPLDYMLQSFPEV 494 (629)
Q Consensus 467 ~~~~q~~~~~--------------------~~~--------------------------------~~~~~~~~~~~~~~~ 494 (629)
+|.++.+..+ +.. .+++.+.+.. +...
T Consensus 759 gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~-~~~~ 837 (993)
T 2ygr_A 759 GYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEF-FEPI 837 (993)
T ss_dssp TCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHH-STTC
T ss_pred cccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHH-hhcc
Confidence 1111111000 000 0112222111 1111
Q ss_pred hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---Cc
Q psy10512 495 KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP---HLLLLDEPTNHLDMETIDALADAINDF---EG 568 (629)
Q Consensus 495 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~ 568 (629)
....+..++|+.+||......+++.+|||||||||+||++|+.+| +||||||||+|||+.++..|++.|.++ +.
T Consensus 838 ~~~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~ 917 (993)
T 2ygr_A 838 AGVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGN 917 (993)
T ss_dssp HHHHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 112345678999999753445688999999999999999999865 999999999999999999999998765 67
Q ss_pred eEEEEecCHHHHHhhcCEEEEE------eCCEEEEecCCHHHHHH
Q psy10512 569 GLVLVSHDFRLINQVAEEIWIC------ENGKVTKWEGNILDYKE 607 (629)
Q Consensus 569 ~vi~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 607 (629)
|||+||||++++ .+||+|++| ++|+|+ +.|+++++..
T Consensus 918 TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv-~~G~~~el~~ 960 (993)
T 2ygr_A 918 TVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVV-AQGTPEDVAA 960 (993)
T ss_dssp EEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEE-EEECHHHHHH
T ss_pred EEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEE-EecCHHHHHh
Confidence 999999999998 579999999 689997 5788877653
No 12
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=3.1e-50 Score=464.14 Aligned_cols=333 Identities=21% Similarity=0.265 Sum_probs=235.2
Q ss_pred HHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEE
Q psy10512 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP--HLLLLDEPTNHLDLDACVWLEEELKT---YKRILV 283 (629)
Q Consensus 209 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P--~iLLLDEPT~~LD~~~~~~l~~~L~~---~~~tvI 283 (629)
..++ +.|..+||.....++++.+|||||+|||+||++|..+| +||||||||++||+....+|++.|++ .|.|||
T Consensus 482 ~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVI 560 (972)
T 2r6f_A 482 RDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLI 560 (972)
T ss_dssp HHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEE
T ss_pred HHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 3444 45889999633368999999999999999999999985 99999999999999999999987764 478999
Q ss_pred EEecCHHHHHhhcceeEEE------cCCeEEEEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHH
Q psy10512 284 IISHSQDFLNGVCTNIIHL------DKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLA 357 (629)
Q Consensus 284 ivsHd~~~l~~~~d~ii~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (629)
+||||++++. .||+|++| ++|++++.| +++.+..... ....
T Consensus 561 vVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G-~~~e~~~~~~----------------------------slt~--- 607 (972)
T 2r6f_A 561 VVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAG-TPEEVMNDPN----------------------------SLTG--- 607 (972)
T ss_dssp EECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEE-CTTTTTTCTT----------------------------CTTH---
T ss_pred EEecCHHHHH-hCCEEEEeCCCccCCCCEEEEec-CHHHHHhhhH----------------------------HHHH---
Confidence 9999999986 69999999 789998765 4443321000 0000
Q ss_pred HHHHHHHHHHHHHhhcCCCcccccCcceEEeccCC-CCCCCCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCC
Q psy10512 358 RQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSC-GKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPN 436 (629)
Q Consensus 358 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~N 436 (629)
..|...... . +|.. .....+.|++++++. . .|+||||+|+.|+++||+|+|
T Consensus 608 ----------~~l~g~~~~-~----------~~~~~~~~~~~~L~v~~l~~------~-~Lk~Vsl~I~~Geiv~I~G~n 659 (972)
T 2r6f_A 608 ----------QYLSGKKFI-P----------IPAERRRPDGRWLEVVGARE------H-NLKNVSVKIPLGTFVAVTGVS 659 (972)
T ss_dssp ----------HHHHTSSCC-C----------CCSSCCCCCSCEEEEEEECS------S-SCCSEEEEEESSSEEECCBCT
T ss_pred ----------HHhcCCccc-c----------CccccccccceEEEEecCcc------c-ccccceEEEcCCCEEEEEcCC
Confidence 001110000 0 1111 111236899999862 2 599999999999999999999
Q ss_pred CCchHHHHHHHH-cCC-------CCCccE-------------EEECCce------------------------------e
Q psy10512 437 GAGKSTLLNLIY-GDL-------TPSVGM-------------VRKNSHL------------------------------R 465 (629)
Q Consensus 437 GsGKSTLlk~l~-G~~-------~p~~G~-------------i~~~~~~------------------------------~ 465 (629)
|||||||+++|+ |.+ .+..|. |.+++.. .
T Consensus 660 GSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~ 739 (972)
T 2r6f_A 660 GSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKV 739 (972)
T ss_dssp TSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHH
Confidence 999999999854 322 123342 3333211 0
Q ss_pred EEeeccchhcccC----------------------------------------------------CCCCHHHHHhhcCCC
Q psy10512 466 FARYHQHLHELLD----------------------------------------------------LDISPLDYMLQSFPE 493 (629)
Q Consensus 466 ~~~~~q~~~~~~~----------------------------------------------------~~~~~~~~~~~~~~~ 493 (629)
.+|.+|.+..+.. ..+++.+.+.. +..
T Consensus 740 ~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~-~~~ 818 (972)
T 2r6f_A 740 RGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDF-FAS 818 (972)
T ss_dssp TTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHH-TCS
T ss_pred hcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHH-Hhc
Confidence 1222221110000 01122222211 111
Q ss_pred hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---C
Q psy10512 494 VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP---HLLLLDEPTNHLDMETIDALADAINDF---E 567 (629)
Q Consensus 494 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPT~~LD~~~~~~l~~~l~~~---~ 567 (629)
.....++.++|+.+||......+++.+|||||||||+||++|+.+| +||||||||+|||+.++..|++.|.++ +
T Consensus 819 ~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G 898 (972)
T 2r6f_A 819 IPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898 (972)
T ss_dssp CHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 1122345688999999763455688999999999999999999865 999999999999999999999998765 6
Q ss_pred ceEEEEecCHHHHHhhcCEEEEE------eCCEEEEecCCHHHHH
Q psy10512 568 GGLVLVSHDFRLINQVAEEIWIC------ENGKVTKWEGNILDYK 606 (629)
Q Consensus 568 ~~vi~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 606 (629)
.|||+||||++++ .+||+|++| ++|+|+ ..|+++++.
T Consensus 899 ~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv-~~g~~~el~ 941 (972)
T 2r6f_A 899 DTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIV-AVGTPEEVA 941 (972)
T ss_dssp CEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEE-EEESHHHHH
T ss_pred CEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEE-EecCHHHHH
Confidence 7999999999998 579999999 689997 467776653
No 13
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.1e-45 Score=378.09 Aligned_cols=207 Identities=25% Similarity=0.374 Sum_probs=176.5
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
.++|+++||+++|+.+ ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.
T Consensus 5 ~~~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 5 DYILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp CEEEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHH
T ss_pred CcEEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHh
Confidence 3589999999999643 34899999999999999999999999999999999999999999999873
Q ss_pred eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccC
Q psy10512 464 LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA 538 (629)
Q Consensus 464 ~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 538 (629)
..++|++|++...+. ..|+.+++... .+.....+++.++++.+||... .++++.+|||||||||+|||||+.+
T Consensus 84 ~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~iAraL~~~ 161 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHL-KDKPTHCLSFGQKKRVAIAGVLVME 161 (275)
T ss_dssp HSEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGG-TTSBGGGSCHHHHHHHHHHHHHTTC
T ss_pred CcEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-hcCCcccCCHHHHHHHHHHHHHHcC
Confidence 248999998643333 57888876432 1222335678899999999754 4567899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|+||||||||+|||+.++..+++.|.++ +.|||+||||++++..+||+|++|++|+++ +.|+++++..
T Consensus 162 P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 233 (275)
T 3gfo_A 162 PKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA 233 (275)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEE-EEECHHHHTH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHhc
Confidence 9999999999999999999999998765 568999999999999999999999999997 5788877643
No 14
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.1e-45 Score=370.45 Aligned_cols=203 Identities=24% Similarity=0.347 Sum_probs=170.0
Q ss_pred eEEEEEEEEEEcCCC--CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 399 VIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
+|+++||+++|+.+. ..+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 489999999996432 24899999999999999999999999999999999999999999999873
Q ss_pred --eeEEeeccchhcccCCCCCHHHHHhhc--------CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHH
Q psy10512 464 --LRFARYHQHLHELLDLDISPLDYMLQS--------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY 533 (629)
Q Consensus 464 --~~~~~~~q~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 533 (629)
..++|++|++. +...+|+.+++... .+.....+++.++++.+|+.+...++++.+|||||||||+|||
T Consensus 81 ~~~~i~~v~Q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 81 RRDKIGFVFQQFN--LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHEEEECTTCC--CCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhccEEEEecCCc--cCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 14899999863 45567888876431 1112234567889999999765445678999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 534 LAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 534 al~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++.+ .+||+|++|++|+++. .++..++
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~-~~~~~~~ 232 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER-EEKLRGF 232 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEE-EEECC--
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE-EcChhhh
Confidence 999999999999999999999999999998765 57999999999965 7999999999999974 5554444
No 15
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.3e-45 Score=386.92 Aligned_cols=208 Identities=20% Similarity=0.297 Sum_probs=177.4
Q ss_pred CCCCeEEEEEEEEEEcCCC--CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------
Q psy10512 395 IPPPVIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------- 463 (629)
Q Consensus 395 ~~~~~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------- 463 (629)
...++|+++||++.|+.+. ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 3457899999999996422 34899999999999999999999999999999999999999999999873
Q ss_pred -----eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHH
Q psy10512 464 -----LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY 533 (629)
Q Consensus 464 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 533 (629)
..++|++|++. +....|+.+++... .+.....+++.++|+.+||.+.. ++++.+|||||||||+|||
T Consensus 100 ~~~~r~~Ig~v~Q~~~--l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~-~~~~~~LSGGqkQRVaIAr 176 (366)
T 3tui_C 100 LTKARRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-DSYPSNLSGGQKQRVAIAR 176 (366)
T ss_dssp HHHHHTTEEEECSSCC--CCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT-TCCTTTSCHHHHHHHHHHH
T ss_pred HHHHhCcEEEEeCCCc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHH
Confidence 25899999863 55667888876432 22223456788999999997654 5678999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 534 LAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 534 al~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||+.+|+||||||||++||+.++..++++|+++ +.|||+||||++++..+||||++|++|+|+ ..|++.++.
T Consensus 177 AL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv-~~g~~~ev~ 252 (366)
T 3tui_C 177 ALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEVF 252 (366)
T ss_dssp HTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-ECCBHHHHH
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999999999999999999998765 569999999999999999999999999997 578877653
No 16
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-44 Score=368.09 Aligned_cols=204 Identities=25% Similarity=0.356 Sum_probs=173.4
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-------------
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL------------- 464 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------------- 464 (629)
++|+++||+++|+. ..+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 5 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred ceEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 57999999999953 358999999999999999999999999999999999999999999987631
Q ss_pred -----------eEEeeccchhcccCCCCCHHHHHhhc---C---CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHH
Q psy10512 465 -----------RFARYHQHLHELLDLDISPLDYMLQS---F---PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKC 527 (629)
Q Consensus 465 -----------~~~~~~q~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkq 527 (629)
.++|++|+. .+...+|+.+++... . +.....+++.++++.+|+.+...++++.+|||||||
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~q 160 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQ 160 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHH
T ss_pred cChhhHHHHhcceEEEecCc--ccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHH
Confidence 378888874 344567888876431 1 111234568899999999764135678999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHH
Q psy10512 528 RVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604 (629)
Q Consensus 528 rv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 604 (629)
||+|||||+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ ..|++++
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 239 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQ 239 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 999999999999999999999999999999999998765 568999999999999999999999999997 4688776
Q ss_pred HH
Q psy10512 605 YK 606 (629)
Q Consensus 605 ~~ 606 (629)
+.
T Consensus 240 ~~ 241 (262)
T 1b0u_A 240 VF 241 (262)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 17
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.1e-45 Score=377.83 Aligned_cols=220 Identities=22% Similarity=0.281 Sum_probs=167.9
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 87 DVKIANFSITFHG-CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 87 ~i~i~nls~~y~~-~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
+|+++||+++|++ ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+.+.. +.... ..
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~--i~~~~-~~----- 78 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP--IDYSR-KG----- 78 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE--CCCSH-HH-----
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEE--CCccc-cc-----
Confidence 6999999999975 469999999999999999999999999999999999999999988775432 21000 00
Q ss_pred hchHHHHHHHHHHHHHh-ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
....+..+..+.++.. ..... +..+...+..........+..+++.++|+.+|+. +..++++.+|||||||||+||
T Consensus 79 -~~~~~~~ig~v~Q~~~~~~~~~-tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 79 -IMKLRESIGIVFQDPDNQLFSA-SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIA 155 (275)
T ss_dssp -HHHHHHSEEEECSSGGGTCCSS-BHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHH
T ss_pred -HHHHhCcEEEEEcCcccccccC-cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHH
Confidence 0000001111111110 11122 2333322222222344556677899999999996 678999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||+|++|++|++++.+.+.+.+
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999887643 689999999999999999999999999999887665544
No 18
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.5e-45 Score=372.08 Aligned_cols=216 Identities=23% Similarity=0.327 Sum_probs=165.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|+++++|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+.. +.......
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~--i~~~~~~~------ 95 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGIN--LKAKDTNL------ 95 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE--SSSTTCCH------
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEE--CCCccccH------
Confidence 5999999999999999999999999999999999999999999999999999999998875432 21000000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHh-hhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYD-RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
...+..+..+.+... ..+..+..++..+.. .+.........+++.++++.+|+. +..++++.+|||||||||+|||
T Consensus 96 -~~~~~~i~~v~Q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~lAr 172 (263)
T 2olj_A 96 -NKVREEVGMVFQRFN-LFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-DKAHAYPDSLSGGQAQRVAIAR 172 (263)
T ss_dssp -HHHHHHEEEECSSCC-CCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHH
T ss_pred -HHHhCcEEEEeCCCc-CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHH
Confidence 000111111111111 112223333332211 222233344567789999999996 5789999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||+|++|++|+++..+.+
T Consensus 173 aL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 243 (263)
T 2olj_A 173 ALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKP 243 (263)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999988654 68999999999999999999999999999876544
No 19
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.6e-45 Score=385.24 Aligned_cols=220 Identities=24% Similarity=0.295 Sum_probs=169.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|++..+|+||||+|++||+++|+||||||||||||+|+|++.|++|+|.+.+....-........
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~----- 78 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR----- 78 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGG-----
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchh-----
Confidence 599999999999999999999999999999999999999999999999999999999987643221000000000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
+..+..+++....+ +..+..++..+..........+..+++.++|+.+||. ++.++++.+|||||||||+||||
T Consensus 79 ----~r~ig~vfQ~~~l~-p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRValArA 152 (359)
T 3fvq_A 79 ----ERRLGYLVQEGVLF-PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSGGQQQRAALARA 152 (359)
T ss_dssp ----GSCCEEECTTCCCC-TTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCHHHHHHHHHHHH
T ss_pred ----hCCEEEEeCCCcCC-CCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHH
Confidence 00011111111122 2223333332222222334455677899999999996 67899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHH----hhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEEL----KTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L----~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|+.+|+||||||||++||+..+..+.+.| ++.+.|+|+||||++++..+||||++|++|+++..+.+.+.|
T Consensus 153 L~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 153 LAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 99999999999999999999998887654 345889999999999999999999999999999887765544
No 20
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.6e-44 Score=365.64 Aligned_cols=203 Identities=21% Similarity=0.324 Sum_probs=173.5
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-------------
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL------------- 464 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------------- 464 (629)
++|+++||++.|+. ..+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++..
T Consensus 23 ~~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 23 QMIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp CSEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred heEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 47999999999953 358999999999999999999999999999999999999999999998731
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhc---C---CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccC
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQS---F---PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA 538 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 538 (629)
.++|++|... +...+|+.+++... . +.....+++.++++.+|+.+.. ++++.+|||||||||+|||||+.+
T Consensus 101 ~i~~v~Q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGqkQRv~lAraL~~~ 177 (263)
T 2olj_A 101 EVGMVFQRFN--LFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKA-HAYPDSLSGGQAQRVAIARALAME 177 (263)
T ss_dssp HEEEECSSCC--CCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCc--CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-cCChhhCCHHHHHHHHHHHHHHCC
Confidence 3789998753 44567888876431 1 1112345688999999997544 567899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 178 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 247 (263)
T 2olj_A 178 PKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYII-EEGKPEDLF 247 (263)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999999999999998765 568999999999999999999999999997 468877654
No 21
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=7e-45 Score=385.55 Aligned_cols=216 Identities=22% Similarity=0.328 Sum_probs=172.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.|+++||+++|++..+|+||||+|++||+++|+||||||||||||+|+|++.|++|+|.+.+............+..
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~--- 79 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM--- 79 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEE---
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEE---
Confidence 49999999999999999999999999999999999999999999999999999999988754322110000011111
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
++|+...++..+..++ ..+..........+..+++.++++.+|+. ++.++++.+|||||||||+||||
T Consensus 80 ----------VfQ~~~l~p~ltV~en-i~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 80 ----------VFQSYALYPHLSVAEN-MSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRT 147 (381)
T ss_dssp ----------ECTTCCCCTTSCHHHH-HTHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTCCGGGSCHHHHHHHHHHHH
T ss_pred ----------EecCCcCCCCCCHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhHCCHHHHHHHHHHHH
Confidence 1122222222233333 32222333455566778899999999996 67899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||||++|++|+++..+.+.+.|
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 99999999999999999999999988877654 789999999999999999999999999999887766544
No 22
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.2e-44 Score=379.32 Aligned_cols=204 Identities=21% Similarity=0.293 Sum_probs=175.8
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------e
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-------------L 464 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~ 464 (629)
++|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|. .
T Consensus 3 ~~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 3 AALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred cEEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 36999999999953 35899999999999999999999999999999999999999999998763 2
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhcC-----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
.++|++|+. .+...+|+.+++.... +.....+++.++|+.+||.+.. ++++.+|||||||||+|||||+.+|
T Consensus 81 ~ig~vfQ~~--~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-~r~~~~LSGGq~QRValArAL~~~P 157 (359)
T 3fvq_A 81 RLGYLVQEG--VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELA-GRYPHELSGGQQQRAALARALAPDP 157 (359)
T ss_dssp CCEEECTTC--CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGT-TSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEeCCC--cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHHHHcCC
Confidence 488999975 3556789999876532 2223456788999999998654 5678999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhh----cCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAIND----FEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~----~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
++|||||||++||+..+..+.+.|.+ .+.|+|+||||++++..+||||++|++|+|+ ..|+++++..
T Consensus 158 ~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~el~~ 228 (359)
T 3fvq_A 158 ELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL-QTASPHELYR 228 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EEeCHHHHHh
Confidence 99999999999999999988875543 4679999999999999999999999999997 5788877543
No 23
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.5e-44 Score=366.85 Aligned_cols=204 Identities=25% Similarity=0.333 Sum_probs=176.1
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------ee
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LR 465 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 465 (629)
.++|+++||++.|+. ..+|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.++|. ..
T Consensus 9 ~~~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 9 VALLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CCEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred cceEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 368999999999953 35899999999999999999999999999999999999999999999874 23
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcC---CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc-----
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSF---PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ----- 537 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~----- 537 (629)
++|++|... +.+..|+.+++.... ......+++.++++.+|+.+.. ++++.+|||||||||+|||||+.
T Consensus 87 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~QRv~iAraL~~~~~~~ 163 (266)
T 4g1u_C 87 RAVMRQYSE--LAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALA-QRDYRVLSGGEQQRVQLARVLAQLWQPQ 163 (266)
T ss_dssp EEEECSCCC--CCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTT-TSBGGGCCHHHHHHHHHHHHHHHTCCSS
T ss_pred EEEEecCCc--cCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHh-cCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 788888753 345678888875432 2223466788999999997654 46779999999999999999999
Q ss_pred -CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 538 -APHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 538 -~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|+++++.
T Consensus 164 ~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~-~~g~~~~~~ 236 (266)
T 4g1u_C 164 PTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV-ACGTPEEVL 236 (266)
T ss_dssp CCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHC
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EEcCHHHHh
Confidence 99999999999999999999999998776 248999999999999999999999999997 578887764
No 24
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.6e-45 Score=386.45 Aligned_cols=221 Identities=24% Similarity=0.394 Sum_probs=170.4
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh
Q psy10512 87 DVKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
+|+++||+++|++ ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+.+. ++.......+
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~--~i~~~~~~~~- 100 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQ--ELTTLSESEL- 100 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE--ECSSCCHHHH-
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCE--ECCcCCHHHH-
Confidence 6999999999964 46999999999999999999999999999999999999999998887543 2221110000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
...+..+.++++....++..+..+++ .+...+......+..+++.++|+.+||. +..++++.+|||||||||+
T Consensus 101 -----~~~r~~Ig~v~Q~~~l~~~~TV~env-~~~~~~~~~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVa 173 (366)
T 3tui_C 101 -----TKARRQIGMIFQHFNLLSSRTVFGNV-ALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVA 173 (366)
T ss_dssp -----HHHHTTEEEECSSCCCCTTSCHHHHH-HHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHH
T ss_pred -----HHHhCcEEEEeCCCccCCCCCHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHH
Confidence 00011111111221112222333333 3333333445566678899999999996 5789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||||++|++|++++.|.+.+.+
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999988654 789999999999999999999999999999876555443
No 25
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.4e-45 Score=371.20 Aligned_cols=220 Identities=24% Similarity=0.338 Sum_probs=165.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCC-----C---Cc
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPA-----S---DK 158 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~-----~---~~ 158 (629)
+|+++||+++|+++++|+||||+|++|+++||+||||||||||||+|+|+++|++|+|.+.+.. +.. . ..
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~--~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQN--INLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE--CCEEECTTSSEEES
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE--cccccccccccccc
Confidence 5999999999999999999999999999999999999999999999999999999998875422 110 0 00
Q ss_pred chhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHh-hhhccChhhHHHHHHHHHHhCCCCchh-hhcccCCCChH
Q psy10512 159 SALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD-RLDDISADTAEARAANILHGLGFTKEM-QQKKTKDFSGG 236 (629)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~L~~lgl~~~~-~~~~~~~LSGG 236 (629)
... .....+..+..+.+... ..+..+..++..+.. ...........+++.++++.+|+. +. .++++.+||||
T Consensus 84 ~~~----~~~~~~~~i~~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgG 157 (262)
T 1b0u_A 84 DKN----QLRLLRTRLTMVFQHFN-LWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHLSGG 157 (262)
T ss_dssp CHH----HHHHHHHHEEEECSSCC-CCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHH
T ss_pred Chh----hHHHHhcceEEEecCcc-cCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccCCHH
Confidence 000 00000111111111111 112223333332211 222233344567789999999997 56 79999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 237 WRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 237 qrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
|||||+|||||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++..+.+
T Consensus 158 q~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (262)
T 1b0u_A 158 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP 237 (262)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999988654 68999999999999999999999999999977554
Q ss_pred H
Q psy10512 314 Y 314 (629)
Q Consensus 314 ~ 314 (629)
.
T Consensus 238 ~ 238 (262)
T 1b0u_A 238 E 238 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 26
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.8e-44 Score=370.14 Aligned_cols=206 Identities=23% Similarity=0.312 Sum_probs=175.2
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
.++|+++||++.|+. ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.
T Consensus 19 ~~~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred CceEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 458999999999953 35899999999999999999999999999999999999999999999863
Q ss_pred eeEEeeccchhcccCCCCCHHHHHhhcC---------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHH
Q psy10512 464 LRFARYHQHLHELLDLDISPLDYMLQSF---------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYL 534 (629)
Q Consensus 464 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAra 534 (629)
..++|++|.....+....|+.+++.... +.....+++.++++.+|+... .++++.+|||||||||+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAK-AQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGG-TTSBGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhH-hcCChhhCCHHHHHHHHHHHH
Confidence 2478999976433334568888875421 111234568889999999754 456789999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceE--EEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGL--VLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 535 l~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~v--i~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|+.+|+||||||||+|||+.++..+++.|.++ +.|| |+||||++++..+||+|++|++|+++ +.|+++++.
T Consensus 176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 251 (279)
T 2ihy_A 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI-QQGAVEDIL 251 (279)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE-EEEEHHHHC
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999999999999998776 5689 99999999999999999999999997 468777653
No 27
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.2e-44 Score=356.52 Aligned_cols=196 Identities=22% Similarity=0.316 Sum_probs=167.6
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------------
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-------------- 463 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------- 463 (629)
++|+++||+++|+. ..+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 3 EILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred cEEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 47999999999953 35899999999999999999999999999999999999999999998762
Q ss_pred -eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc
Q psy10512 464 -LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 464 -~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 537 (629)
..++|++|+.. +....|+.+++... .+.....+++.++++.+|+.+.. ++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~laral~~ 157 (224)
T 2pcj_A 81 NRKLGFVFQFHY--LIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL-SRKPYELSGGEQQRVAIARALAN 157 (224)
T ss_dssp HHHEEEECSSCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-TCCGGGSCHHHHHHHHHHHHTTT
T ss_pred hCcEEEEecCcc--cCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHHHHHHHHHc
Confidence 24889998753 44567888876431 11112345688999999997654 56789999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecC
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g 600 (629)
+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++ .+||++++|++|+++. .|
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~-~g 221 (224)
T 2pcj_A 158 EPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVG-EI 221 (224)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEE-EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE-Ee
Confidence 99999999999999999999999998765 56999999999998 8999999999999974 44
No 28
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.3e-44 Score=360.13 Aligned_cols=204 Identities=20% Similarity=0.271 Sum_probs=173.1
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------e
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------L 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~ 464 (629)
.++|+++||+++|+. ..+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|. .
T Consensus 4 ~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp SEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred CceEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhC
Confidence 458999999999953 35899999999999999999999999999999999999999999999873 1
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhcC----CChhhHHHHHHHHHHcC-CCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQSF----PEVKDREEMRKIIGRYG-LTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~g-l~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
.++|++|... +...+|+.+++.... ......+.+.++++.++ +.... ++++.+|||||||||+|||||+.+|
T Consensus 82 ~i~~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~~~LSgGq~qrv~lAraL~~~p 158 (240)
T 1ji0_A 82 GIALVPEGRR--IFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERL-KQLGGTLSGGEQQMLAIGRALMSRP 158 (240)
T ss_dssp TEEEECSSCC--CCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTT-TSBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEecCCc--cCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHh-cCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3899998753 445678888775421 11123456778899994 86544 4578999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ +.|+++++.
T Consensus 159 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 227 (240)
T 1ji0_A 159 KLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV-LEGKASELL 227 (240)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEEEHHHHH
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHh
Confidence 999999999999999999999998775 468999999999999999999999999997 467776653
No 29
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.3e-44 Score=379.34 Aligned_cols=218 Identities=22% Similarity=0.317 Sum_probs=171.4
Q ss_pred CCceeEEEEeEEEEe-CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCC--cc
Q psy10512 83 PKSRDVKIANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD--KS 159 (629)
Q Consensus 83 ~~~~~i~i~nls~~y-~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~--~~ 159 (629)
-.+.+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||||+|+|++.|++|+|.+.+.. +.... ..
T Consensus 10 ~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~--i~~~~~~~r 87 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKR--VTDLPPQKR 87 (355)
T ss_dssp -CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEE--CTTCCGGGS
T ss_pred CCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEE--CCcCChhhC
Confidence 356789999999999 88889999999999999999999999999999999999999999998875432 21100 01
Q ss_pred hhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHH
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRM 239 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrq 239 (629)
.+.+ +++....+ +..+..++..+..........+..+++.++|+.+||. ++.++++.+|||||||
T Consensus 88 ~ig~-------------v~Q~~~l~-~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~Q 152 (355)
T 1z47_A 88 NVGL-------------VFQNYALF-QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-SYANRFPHELSGGQQQ 152 (355)
T ss_dssp SEEE-------------ECGGGCCC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHH
T ss_pred cEEE-------------EecCcccC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHH
Confidence 1111 11121222 2223333333222222334455567899999999996 6789999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
||+|||||+.+|+||||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+
T Consensus 153 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 232 (355)
T 1z47_A 153 RVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEE 232 (355)
T ss_dssp HHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999887654 7899999999999999999999999999998766544
Q ss_pred HH
Q psy10512 316 AF 317 (629)
Q Consensus 316 ~~ 317 (629)
.|
T Consensus 233 l~ 234 (355)
T 1z47_A 233 VY 234 (355)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 30
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.3e-44 Score=361.63 Aligned_cols=205 Identities=21% Similarity=0.317 Sum_probs=174.3
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc----------eeE
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH----------LRF 466 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~~ 466 (629)
.++|+++||++.|+. ..+|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..+
T Consensus 13 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE
Confidence 467999999999953 35899999999999999999999999999999999999999999999873 248
Q ss_pred EeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCE
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 541 (629)
+|++|... +...+|+.+++... .+.....+++.++++.+||.... ++++.+|||||||||+|||||+.+|+|
T Consensus 91 ~~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGq~qRv~lAraL~~~p~l 167 (256)
T 1vpl_A 91 SYLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-KDRVSTYSKGMVRKLLIARALMVNPRL 167 (256)
T ss_dssp EEECTTCC--CCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG-GSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEcCCCC--CCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHh-cCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 89998753 34567888876431 11112235678899999997654 567899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 542 LLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 542 LlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|||||||+|||+.++..+++.|.++ +.|||+||||++++..+||++++|++|+++ +.|+++++.+
T Consensus 168 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 235 (256)
T 1vpl_A 168 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV-ETGTVEELKE 235 (256)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE-EEEEHHHHHH
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEE-EecCHHHHHH
Confidence 9999999999999999999998765 568999999999999999999999999997 4687777643
No 31
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.5e-44 Score=365.58 Aligned_cols=202 Identities=19% Similarity=0.274 Sum_probs=172.5
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------e
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------L 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~ 464 (629)
.++|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. .
T Consensus 5 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (257)
T 1g6h_A 5 MEILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82 (257)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CcEEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 357999999999953 35899999999999999999999999999999999999999999999863 1
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhcC------------------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHH
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQSF------------------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQK 526 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqk 526 (629)
.++|++|+.. +....|+.+++.... ......+++.++++.+|+... .++++.+||||||
T Consensus 83 ~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqk 159 (257)
T 1g6h_A 83 GIVRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-YDRKAGELSGGQM 159 (257)
T ss_dssp TEEECCCCCG--GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-TTSBGGGSCHHHH
T ss_pred CEEEEccCCc--cCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchh-hCCCchhCCHHHH
Confidence 4889998753 334578888764321 111234568899999999754 4567899999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHH
Q psy10512 527 CRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNIL 603 (629)
Q Consensus 527 qrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 603 (629)
|||+|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++. .|+++
T Consensus 160 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~ 238 (257)
T 1g6h_A 160 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGE 238 (257)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESH
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EeCHH
Confidence 9999999999999999999999999999999999998776 5699999999999999999999999999974 67766
Q ss_pred H
Q psy10512 604 D 604 (629)
Q Consensus 604 ~ 604 (629)
+
T Consensus 239 ~ 239 (257)
T 1g6h_A 239 E 239 (257)
T ss_dssp H
T ss_pred H
Confidence 6
No 32
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.4e-44 Score=368.76 Aligned_cols=214 Identities=20% Similarity=0.242 Sum_probs=165.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||++.|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+.+.. +......
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~--~~~~~~~------- 81 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQN--LNSWQPK------- 81 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEE--TTTSCHH-------
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE--CCcCCHH-------
Confidence 6999999999999999999999999999999999999999999999999999999999875432 2111100
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
..+..+..+.+.....+. .+..++...... ........+++.++++.+|+. +..++++.+|||||||||+||||
T Consensus 82 --~~~~~i~~v~q~~~~~~~-~tv~e~l~~~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 82 --ALARTRAVMRQYSELAFP-FSVSEVIQMGRA--PYGGSQDRQALQQVMAQTDCL-ALAQRDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp --HHHHHEEEECSCCCCCSC-CBHHHHHHGGGT--TSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGCCHHHHHHHHHHHH
T ss_pred --HHhheEEEEecCCccCCC-CCHHHHHHhhhh--hcCcHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHH
Confidence 000000000000011112 233333322211 112344567889999999996 57889999999999999999999
Q ss_pred Hcc------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 247 LYV------KPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 247 L~~------~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
|+. +|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||+|++|++|++++.+.+.+
T Consensus 156 L~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~ 234 (266)
T 4g1u_C 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEE 234 (266)
T ss_dssp HHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999 99999999999999999999999988765 3599999999999999999999999999998765433
No 33
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=7.4e-44 Score=377.71 Aligned_cols=203 Identities=23% Similarity=0.281 Sum_probs=176.5
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
+|+++||+++|+. ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|+
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~V 80 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEE
Confidence 5899999999953 35899999999999999999999999999999999999999999999873 358999
Q ss_pred ccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 470 HQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
+|+. .+...+|+.+++... .+.....+++.++++.+||.+.. ++++.+|||||||||+|||||+.+|+||||
T Consensus 81 fQ~~--~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~r~p~~LSGGqrQRVaiArAL~~~P~lLLL 157 (381)
T 3rlf_A 81 FQSY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL-DRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (381)
T ss_dssp CTTC--CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGT-TCCGGGSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred ecCC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-cCChhHCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9986 356678998887532 22223456788999999998654 567899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
||||++||+..+..+.+.|+++ +.|+|+||||++++..+||||++|++|+|+ ..|+++++..
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~~l~~ 223 (381)
T 3rlf_A 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELYH 223 (381)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EEeCHHHHHh
Confidence 9999999999999999888765 679999999999999999999999999997 4688877543
No 34
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.6e-44 Score=357.96 Aligned_cols=214 Identities=22% Similarity=0.294 Sum_probs=162.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+. ++.......
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~--~~~~~~~~~------ 75 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGK--EVDYTNEKE------ 75 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTE--ECCSSCHHH------
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE--ECCCCCHHH------
Confidence 599999999999999999999999999999999999999999999999999999998877532 221110000
Q ss_pred chHHH-HHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 167 VDEER-VRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 167 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
....+ ..+..+.+... ..+..+..++..+.............+++.++++.+|+. +..++++.+|||||||||+|||
T Consensus 76 ~~~~~~~~i~~v~q~~~-l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHY-LIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HHHHHHHHEEEECSSCC-CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHH
T ss_pred HHHHHhCcEEEEecCcc-cCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHH
Confidence 00000 00111111111 112223333333222222233334556789999999996 5678999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++ .+||++++|++|++++.|
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g 221 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEI 221 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEE
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999988654 68999999999998 799999999999998764
No 35
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.5e-44 Score=360.56 Aligned_cols=216 Identities=24% Similarity=0.317 Sum_probs=161.3
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh
Q psy10512 87 DVKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
+|+++||+++|++ ..+|+|+||+|++||++||+|||||||||||++|+|+++|++|+|.+.+.. +........
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~--~~~~~~~~~- 77 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK--TNDLDDDEL- 77 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE--CTTCCHHHH-
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEE--cccCCHHHH-
Confidence 3899999999973 469999999999999999999999999999999999999999998875432 211110000
Q ss_pred hhhhchHH-HHHHHHHHHHHhccCChhHHHHHHHHHhhhh---ccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHH
Q psy10512 163 CVMEVDEE-RVRLEKLAEQLVACEDDESQEQLMDIYDRLD---DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWR 238 (629)
Q Consensus 163 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqr 238 (629)
... +..+..+.++...++..+..+++. ...... .....+..+++.++++.+|+.....++++.+||||||
T Consensus 78 -----~~~~~~~i~~v~Q~~~l~~~~tv~enl~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 151 (235)
T 3tif_A 78 -----TKIRRDKIGFVFQQFNLIPLLTALENVE-LPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQ 151 (235)
T ss_dssp -----HHHHHHHEEEECTTCCCCTTSCHHHHHH-HHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHH
T ss_pred -----HHHhhccEEEEecCCccCCCCcHHHHHH-HHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHH
Confidence 000 000111111111111223333332 221111 2334455678899999999975445899999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|||+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++.+ .+||+|++|++|+++..+.
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~ 228 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEK 228 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999988654 78999999999965 7999999999999987643
No 36
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.7e-43 Score=372.64 Aligned_cols=205 Identities=24% Similarity=0.287 Sum_probs=176.7
Q ss_pred CCCeEEEEEEEEEE-cCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------ee
Q psy10512 396 PPPVIMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LR 465 (629)
Q Consensus 396 ~~~~l~~~~l~~~y-~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ 465 (629)
+.++|+++||+++| +. . .+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..
T Consensus 11 ~~~~l~~~~l~~~y~g~-~-~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 88 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGG-A-RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN 88 (355)
T ss_dssp CCEEEEEEEEEECCTTS-T-TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSS
T ss_pred CCceEEEEEEEEEEcCC-C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCc
Confidence 45689999999999 53 3 3899999999999999999999999999999999999999999999873 35
Q ss_pred EEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
++|++|+.. +...+|+.+++... .+.....+++.++++.+||.+.. ++++.+|||||||||+|||||+.+|+
T Consensus 89 ig~v~Q~~~--l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-~r~~~~LSGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 89 VGLVFQNYA--LFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYA-NRFPHELSGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp EEEECGGGC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEecCcc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-cCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999853 45678998876532 12222356788999999997654 56779999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+|+ ..|+++++.
T Consensus 166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~ 234 (355)
T 1z47_A 166 VLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVE-QFGTPEEVY 234 (355)
T ss_dssp EEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999999988765 679999999999999999999999999997 468877654
No 37
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-43 Score=355.28 Aligned_cols=199 Identities=26% Similarity=0.371 Sum_probs=171.0
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
+|+++||+++|+. +|+++||+|++ ++++|+||||||||||+|+|+|+++|++|+|.++|. ..++|+
T Consensus 1 ml~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 1 MFLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CCEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred CEEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 4789999999952 59999999999 999999999999999999999999999999999873 247888
Q ss_pred ccchhcccCCCCCHHHHHhhcCC--C-hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy10512 470 HQHLHELLDLDISPLDYMLQSFP--E-VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 546 (629)
+|... +...+|+.+++..... . ....+++.++++.+|+.+.. ++++.+|||||||||+|||||+.+|++|||||
T Consensus 76 ~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 152 (240)
T 2onk_A 76 PQDYA--LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL-DRKPARLSGGERQRVALARALVIQPRLLLLDE 152 (240)
T ss_dssp CSSCC--CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT-TCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES
T ss_pred cCCCc--cCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 88753 4456788888754321 1 12246688999999997654 56789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 547 PTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 547 PT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||+|||+.++..+++.|.++ +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 153 Pts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 215 (240)
T 2onk_A 153 PLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV-EKGKLKELF 215 (240)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 99999999999999998765 568999999999999999999999999997 468877654
No 38
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-43 Score=361.30 Aligned_cols=205 Identities=25% Similarity=0.330 Sum_probs=174.1
Q ss_pred eEEEEEEEEEEcCCC---CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------eeEE
Q psy10512 399 VIMVQNVSFRYSDDG---PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~~~ 467 (629)
+|+++||+++|+.+. ..+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999996222 35899999999999999999999999999999999999999999999873 2489
Q ss_pred eeccchhcccCCCCCHHHHHhhcC----CChhhHHHHHHHHHHcCCC--CcccccCcCcCChhHHHHHHHHHHHccCCCE
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSF----PEVKDREEMRKIIGRYGLT--GRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~gl~--~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 541 (629)
|++|++... ....|+.+++.... +.....+++.++++.+|+. +.. ++++.+|||||||||+|||||+.+|+|
T Consensus 82 ~v~q~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~LSgGq~qRv~lAraL~~~p~l 159 (266)
T 2yz2_A 82 IAFQYPEDQ-FFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFK-DRVPFFLSGGEKRRVAIASVIVHEPDI 159 (266)
T ss_dssp EECSSGGGG-CCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHT-TCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEeccchhh-cCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccc-cCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 999975322 24578888775431 2222356788999999997 544 567899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 542 LLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 542 LlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|+.+++.
T Consensus 160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 226 (266)
T 2yz2_A 160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV-FDGTRMEFL 226 (266)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEE-EEEEHHHHH
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999998775 568999999999999999999999999997 467776654
No 39
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.6e-44 Score=366.98 Aligned_cols=216 Identities=17% Similarity=0.201 Sum_probs=163.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|+++++|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+. ++.......
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~--~~~~~~~~~------ 78 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK--DITNKEPAE------ 78 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE--ECTTCCHHH------
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE--ECCCCCHHH------
Confidence 599999999999999999999999999999999999999999999999999999999887542 221100000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhh--hc-----------cChhhHHHHHHHHHHhCCCCchhhhcccCCC
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRL--DD-----------ISADTAEARAANILHGLGFTKEMQQKKTKDF 233 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~-----------~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 233 (629)
..+..+..+.++...+ +..+..++....... .. ........++.++++.+|+. +..++++.+|
T Consensus 79 --~~~~~i~~v~q~~~l~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~L 154 (257)
T 1g6h_A 79 --LYHYGIVRTFQTPQPL-KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGEL 154 (257)
T ss_dssp --HHHHTEEECCCCCGGG-GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGS
T ss_pred --HHhCCEEEEccCCccC-CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchhC
Confidence 0000000000110111 111222222221111 01 12233456788999999996 5789999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
||||||||+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||+|++|++|+++..
T Consensus 155 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (257)
T 1g6h_A 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234 (257)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999988765 78999999999999999999999999999877
Q ss_pred cCcH
Q psy10512 311 GGNY 314 (629)
Q Consensus 311 ~g~~ 314 (629)
+.+.
T Consensus 235 g~~~ 238 (257)
T 1g6h_A 235 GRGE 238 (257)
T ss_dssp EESH
T ss_pred eCHH
Confidence 5543
No 40
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=6.7e-44 Score=376.72 Aligned_cols=214 Identities=25% Similarity=0.340 Sum_probs=167.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCC--cchhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD--KSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~--~~~~~~~ 164 (629)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||||+|+|++.|++|+|.+.+.. +.... ...+.+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~--i~~~~~~~r~ig~- 79 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVL--VNDIPPKYREVGM- 79 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEE--CTTSCGGGTTEEE-
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEE--CCCCChhhCcEEE-
Confidence 4899999999999999999999999999999999999999999999999999999998875432 21110 001111
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
+++....+ +..+..++..+..........+..+++.++++.+|+. ++.++++.+|||||||||+||
T Consensus 80 ------------v~Q~~~l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSgGq~QRvalA 145 (359)
T 2yyz_A 80 ------------VFQNYALY-PHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID-NLLDRKPTQLSGGQQQRVALA 145 (359)
T ss_dssp ------------ECSSCCCC-TTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHH
T ss_pred ------------EecCcccC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 11111112 2223333333222222222233356789999999996 678999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|||+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+.|
T Consensus 146 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 146 RALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999887654 789999999999999999999999999999877655443
No 41
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.6e-44 Score=376.27 Aligned_cols=216 Identities=22% Similarity=0.283 Sum_probs=169.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|++..+|+|+||+|++|++++|+||||||||||||+|+|++.|++|+|.+.+.. +.......
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~--i~~~~~~~------ 74 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKD--VTELPPKD------ 74 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE--CTTSCGGG------
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEE--CCcCCHhH------
Confidence 4899999999998899999999999999999999999999999999999999999998875432 21100000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
..+..+++....+ +..+..++..+..........+..+++.++++.+|+. ++.++++.+|||||||||+||||
T Consensus 75 -----r~ig~v~Q~~~l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArA 147 (362)
T 2it1_A 75 -----RNVGLVFQNWALY-PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-KLLNRYPWQLSGGQQQRVAIARA 147 (362)
T ss_dssp -----TTEEEECTTCCCC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHH
T ss_pred -----CcEEEEecCcccC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhhCChhhCCHHHHHHHHHHHH
Confidence 0011111111112 2223333333222222334445567899999999996 57899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+.|
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999887654 789999999999999999999999999999877665544
No 42
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6e-44 Score=361.78 Aligned_cols=212 Identities=22% Similarity=0.311 Sum_probs=164.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.|+++||+++|+++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+.. +.. ...
T Consensus 15 ~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~--~~~-~~~------- 84 (256)
T 1vpl_A 15 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKN--VVE-EPH------- 84 (256)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE--TTT-CHH-------
T ss_pred eEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE--CCc-cHH-------
Confidence 5999999999999999999999999999999999999999999999999999999998875422 111 000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
..+..+..+.+... ..+..+..++..+...+.........+++.++++.+|+. +..++++.+|||||||||+||||
T Consensus 85 --~~~~~i~~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAra 160 (256)
T 1vpl_A 85 --EVRKLISYLPEEAG-AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARA 160 (256)
T ss_dssp --HHHTTEEEECTTCC-CCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHHHH
T ss_pred --HHhhcEEEEcCCCC-CCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHHH
Confidence 00000001111111 112223333333322222233334456788999999996 56789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||++++|++|++++.+.
T Consensus 161 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 229 (256)
T 1vpl_A 161 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGT 229 (256)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEE
T ss_pred HHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999988654 6899999999999999999999999999987643
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.6e-43 Score=376.31 Aligned_cols=215 Identities=25% Similarity=0.362 Sum_probs=169.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeeccc-------CCCCCcc
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTRE-------MPASDKS 159 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~-------~~~~~~~ 159 (629)
+|+++||+++|++..+|+|+||+|++|++++|+||||||||||||+|+|++.|++|+|.+.+.... .+.. ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~-~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK-DR 81 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG-GS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh-HC
Confidence 489999999999999999999999999999999999999999999999999999999887543211 1100 01
Q ss_pred hhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHH
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRM 239 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrq 239 (629)
.+.++ ++....+ +..+..++..+..........+..+++.++|+.+||. ++.++++.+|||||||
T Consensus 82 ~ig~v-------------~Q~~~l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~Q 146 (372)
T 1g29_1 82 DIAMV-------------FQSYALY-PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQ 146 (372)
T ss_dssp SEEEE-------------CSCCCCC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHH
T ss_pred CEEEE-------------eCCCccC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCCcccCCHHHHH
Confidence 11111 1111112 2223333333222222334445567899999999996 6789999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 999999999999999999999999999999998887654 7899999999999999999999999999998776655
Q ss_pred HH
Q psy10512 316 AF 317 (629)
Q Consensus 316 ~~ 317 (629)
.|
T Consensus 227 l~ 228 (372)
T 1g29_1 227 VY 228 (372)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 44
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4.2e-43 Score=355.34 Aligned_cols=200 Identities=25% Similarity=0.364 Sum_probs=171.0
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccC
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLD 478 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 478 (629)
+|+++||++.|+.+ ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+. ..++|++|... +.
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~--~~i~~v~q~~~--~~ 78 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY--QSIGFVPQFFS--SP 78 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC--SCEEEECSCCC--CS
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe--ccEEEEcCCCc--cC
Confidence 79999999999622 358999999999999999999999999999999999999999999853 35899999753 33
Q ss_pred CCCCHHHHHhhcC---------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy10512 479 LDISPLDYMLQSF---------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549 (629)
Q Consensus 479 ~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~ 549 (629)
...|+.+++.... +.....+++.++++.+|+.+.. ++++.+|||||||||+|||||+.+|+||||||||+
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 157 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLA-KREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSST
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 4678888765321 1222346688999999997644 56789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 550 HLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 550 ~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+ + +.|+++++.
T Consensus 158 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~~ 216 (253)
T 2nq2_C 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNIL 216 (253)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHHh
Confidence 99999999999998775 5689999999999999999999999999 5 567776653
No 45
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=4.5e-43 Score=370.43 Aligned_cols=203 Identities=22% Similarity=0.257 Sum_probs=175.2
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
+|+++||+++|++ ..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV 80 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE
Confidence 5899999999953 35899999999999999999999999999999999999999999999873 258999
Q ss_pred ccchhcccCCCCCHHHHHhhcCC--C---hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 470 HQHLHELLDLDISPLDYMLQSFP--E---VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
+|+.. +...+|+.+++..... . ....+++.++++.+||.+.. ++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~r~~~~LSgGq~QRvalArAL~~~P~lLLL 157 (359)
T 2yyz_A 81 FQNYA--LYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLL-DRKPTQLSGGQQQRVALARALVKQPKVLLF 157 (359)
T ss_dssp CSSCC--CCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99753 4567899988764321 1 11235688999999997654 567799999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+|+ ..|+++++..
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~l~~ 223 (359)
T 2yyz_A 158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLV-QYGTPDEVYD 223 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999988765 579999999999999999999999999997 4688877543
No 46
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.6e-43 Score=375.62 Aligned_cols=214 Identities=23% Similarity=0.328 Sum_probs=166.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCC--cchhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD--KSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~--~~~~~~~ 164 (629)
+|+++||+++|++..+|+|+||+|++|++++|+||||||||||||+|+|++.|++|+|.+.+.. +.... ...+.++
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~--i~~~~~~~r~ig~v 88 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRD--VTYLPPKDRNISMV 88 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE--CTTSCGGGGTEEEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEE--CCCCChhhCcEEEE
Confidence 4999999999999999999999999999999999999999999999999999999998875432 21110 0111111
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
. +....++.. +..++..+..........+..+++.++|+.+||. ++.++++.+|||||||||+||
T Consensus 89 ~-------------Q~~~l~~~l-tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalA 153 (372)
T 1v43_A 89 F-------------QSYAVWPHM-TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVA 153 (372)
T ss_dssp E-------------C------CC-CHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHH
T ss_pred e-------------cCcccCCCC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHH
Confidence 1 111111222 2222222222222233445567899999999996 678999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHHH
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~~ 317 (629)
|||+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+.|
T Consensus 154 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 154 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999887654 789999999999999999999999999999877665443
No 47
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.3e-43 Score=369.67 Aligned_cols=202 Identities=24% Similarity=0.271 Sum_probs=174.9
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
+|+++||+++|+. ..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV 80 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEE
Confidence 5899999999953 35899999999999999999999999999999999999999999999873 258999
Q ss_pred ccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 470 HQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
+|+.. +...+|+.+++... .+.....+++.++++.+||.+.. ++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~r~~~~LSGGq~QRvalArAL~~~P~lLLL 157 (362)
T 2it1_A 81 FQNWA--LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLL-NRYPWQLSGGQQQRVAIARALVKEPEVLLL 157 (362)
T ss_dssp CTTCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-TCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh-hCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99753 45677898886532 12222346788999999998654 567799999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+|+ ..|+++++.
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~~~ 222 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEIL-QVGTPDEVY 222 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999999999988765 579999999999999999999999999997 468877654
No 48
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=9.9e-44 Score=375.56 Aligned_cols=216 Identities=22% Similarity=0.306 Sum_probs=168.5
Q ss_pred eEEEEeEEEEeCCee--eeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccC-----CCCCcc
Q psy10512 87 DVKIANFSITFHGCE--LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREM-----PASDKS 159 (629)
Q Consensus 87 ~i~i~nls~~y~~~~--~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~-----~~~~~~ 159 (629)
+|+++||+++|++.. +|+|+||+|++|++++|+||||||||||||+|+|++.|++|+|.+.+....- ......
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 489999999999887 9999999999999999999999999999999999999999998875432110 000001
Q ss_pred hhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHH
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRM 239 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrq 239 (629)
.+.++ ++....+ +..+..++..+..........+..+++.++|+.+||. ++.++++.+|||||||
T Consensus 83 ~ig~v-------------~Q~~~l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSGGq~Q 147 (353)
T 1oxx_K 83 KIGMV-------------FQTWALY-PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQ 147 (353)
T ss_dssp CEEEE-------------ETTSCCC-TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHH
T ss_pred CEEEE-------------eCCCccC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHH
Confidence 11111 1111112 2223333333222222334445567899999999996 6789999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHH
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~ 315 (629)
||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+
T Consensus 148 RvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~ 227 (353)
T 1oxx_K 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED 227 (353)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999887654 7899999999999999999999999999998766554
Q ss_pred HH
Q psy10512 316 AF 317 (629)
Q Consensus 316 ~~ 317 (629)
.|
T Consensus 228 l~ 229 (353)
T 1oxx_K 228 LY 229 (353)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 49
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.1e-42 Score=369.67 Aligned_cols=202 Identities=22% Similarity=0.285 Sum_probs=173.8
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 463 (629)
+|+++||+++|++ ..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~ 80 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhH
Confidence 5899999999953 35899999999999999999999999999999999999999999998763
Q ss_pred eeEEeeccchhcccCCCCCHHHHHhhc-----CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccC
Q psy10512 464 LRFARYHQHLHELLDLDISPLDYMLQS-----FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA 538 (629)
Q Consensus 464 ~~~~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 538 (629)
..++|++|+.. +...+|+.+++... .+.....+++.++++.+||.+.. ++++.+|||||||||+|||||+.+
T Consensus 81 r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~r~~~~LSGGq~QRvalArAL~~~ 157 (372)
T 1g29_1 81 RDIAMVFQSYA--LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL-NRKPRELSGGQRQRVALGRAIVRK 157 (372)
T ss_dssp SSEEEECSCCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGT-TCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-cCCcccCCHHHHHHHHHHHHHhcC
Confidence 24788998753 45678898876532 12222346788999999997654 567799999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 539 PHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 539 p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|++|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+|+ ..|+++++.
T Consensus 158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~ 228 (372)
T 1g29_1 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ-QVGSPDEVY 228 (372)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred CCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEE-EeCCHHHHH
Confidence 9999999999999999999999988765 579999999999999999999999999997 468877754
No 50
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.2e-44 Score=357.74 Aligned_cols=213 Identities=15% Similarity=0.182 Sum_probs=162.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|+++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+.. +........
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--~~~~~~~~~----- 78 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD--ITNKPAHVI----- 78 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE--CTTCCHHHH-----
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE--CCCCCHHHH-----
Confidence 5999999999999899999999999999999999999999999999999999999998875422 211100000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCC-CCchhhhcccCCCChHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLG-FTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lg-l~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
.+..+..+.+.. ...+..+..++..+.. ..........+.+.++++.++ +. +..++++.+|||||||||+|||
T Consensus 79 ---~~~~i~~v~q~~-~l~~~ltv~enl~~~~-~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LSgGq~qrv~lAr 152 (240)
T 1ji0_A 79 ---NRMGIALVPEGR-RIFPELTVYENLMMGA-YNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp ---HHTTEEEECSSC-CCCTTSBHHHHHHGGG-TTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHHH
T ss_pred ---HhCCEEEEecCC-ccCCCCcHHHHHHHhh-hcCCCHHHHHHHHHHHHHHcccHh-hHhcCChhhCCHHHHHHHHHHH
Confidence 000000011111 1112223333332221 111223345567888999994 85 5678999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||+|++|++|+++..+.
T Consensus 153 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 222 (240)
T 1ji0_A 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGK 222 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999988754 6899999999999999999999999999987643
No 51
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.7e-43 Score=369.72 Aligned_cols=202 Identities=26% Similarity=0.342 Sum_probs=174.3
Q ss_pred eEEEEEEEEEEcCCCCe--EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-------------
Q psy10512 399 VIMVQNVSFRYSDDGPW--IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------- 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~--il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 463 (629)
+|+++||+++|+. .. +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 5899999999963 34 899999999999999999999999999999999999999999998763
Q ss_pred -eeEEeeccchhcccCCCCCHHHHHhhcCC-----ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc
Q psy10512 464 -LRFARYHQHLHELLDLDISPLDYMLQSFP-----EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 464 -~~~~~~~q~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 537 (629)
..++|++|+.. +...+|+.+++..... .....+++.++++.+||.+.. ++++.+|||||||||+|||||+.
T Consensus 81 ~r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~~~~~~LSGGq~QRvalAraL~~ 157 (353)
T 1oxx_K 81 DRKIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL-NHFPRELSGAQQQRVALARALVK 157 (353)
T ss_dssp GSCEEEEETTSC--CCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hCCEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHHHHh
Confidence 24788998753 4567899988754321 112346788999999997654 56789999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|++|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+|+ ..|+++++.
T Consensus 158 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~l~ 229 (353)
T 1oxx_K 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV-QVGKPEDLY 229 (353)
T ss_dssp CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999999999988765 579999999999999999999999999997 468877654
No 52
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=9.9e-43 Score=369.48 Aligned_cols=202 Identities=21% Similarity=0.250 Sum_probs=172.0
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
+|+++||+++|++ ..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|+
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 88 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 88 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEE
Confidence 6999999999953 35899999999999999999999999999999999999999999999873 358999
Q ss_pred ccchhcccCCCCCHHHHHhhcCC-----ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 470 HQHLHELLDLDISPLDYMLQSFP-----EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
+|+.. +...+|+.+++..... .....+++.++++.+||.+.. ++++.+|||||||||+|||||+.+|++|||
T Consensus 89 ~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~r~~~~LSGGq~QRvalArAL~~~P~lLLL 165 (372)
T 1v43_A 89 FQSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL-NRYPAQLSGGQRQRVAVARAIVVEPDVLLM 165 (372)
T ss_dssp EC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGT-TSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred ecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99853 4567899998865321 112245688999999997654 567799999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+|+ ..|+++++.
T Consensus 166 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~ 230 (372)
T 1v43_A 166 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL-QIGSPTEVY 230 (372)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999988765 579999999999999999999999999997 468877654
No 53
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.7e-44 Score=365.47 Aligned_cols=217 Identities=22% Similarity=0.279 Sum_probs=163.0
Q ss_pred CceeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCC--CCCcchh
Q psy10512 84 KSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMP--ASDKSAL 161 (629)
Q Consensus 84 ~~~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~--~~~~~~~ 161 (629)
..++|+++||+++|+++++|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+. ++. ......
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~--~~~~~~~~~~~- 94 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGK--MPGKVGYSAET- 94 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTB--CCC---CCHHH-
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCE--EcccccCCHHH-
Confidence 345699999999999999999999999999999999999999999999999999999998887532 221 100000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCCh-hHHHHHHHHHh----hhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDD-ESQEQLMDIYD----RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGG 236 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 236 (629)
.+..+..+.+........ .+..++..... .+.........+++.++++.+|+. +..++++.+||||
T Consensus 95 --------~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG 165 (279)
T 2ihy_A 95 --------VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQYIGYLSTG 165 (279)
T ss_dssp --------HHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHH
T ss_pred --------HcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-hHhcCChhhCCHH
Confidence 000011111221111111 12222222110 001111233456788999999996 5789999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEE--EEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 237 WRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRIL--VIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 237 qrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tv--IivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
|||||+|||||+.+|+||||||||++||+.++..+++.|+++ +.|| |+||||++++..+||+|++|++|++++.+
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999988765 6799 99999999999999999999999998764
Q ss_pred C
Q psy10512 312 G 312 (629)
Q Consensus 312 g 312 (629)
.
T Consensus 246 ~ 246 (279)
T 2ihy_A 246 A 246 (279)
T ss_dssp E
T ss_pred C
Confidence 3
No 54
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.7e-43 Score=369.92 Aligned_cols=211 Identities=23% Similarity=0.306 Sum_probs=164.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++|++. +|+|+||+|++|++++|+||||||||||||+|+|++.|++|+|.+.+.. +...
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~--i~~~---------- 67 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKD--VTDL---------- 67 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEE--CTTS----------
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEE--CCCC----------
Confidence 38899999999988 9999999999999999999999999999999999999999998875422 2110
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
...+..+..++++...+ +..+..++..+......... . +++.++|+.+|+. ++.++++.+|||||||||+||||
T Consensus 68 -~~~~r~ig~v~Q~~~l~-~~ltv~enl~~~~~~~~~~~--~-~~v~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalAra 141 (348)
T 3d31_A 68 -SPEKHDIAFVYQNYSLF-PHMNVKKNLEFGMRMKKIKD--P-KRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARA 141 (348)
T ss_dssp -CHHHHTCEEECTTCCCC-TTSCHHHHHHHHHHHHCCCC--H-HHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHH
T ss_pred -chhhCcEEEEecCcccC-CCCCHHHHHHHHHHHcCCCH--H-HHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHH
Confidence 01111111122221222 22233333332222222222 2 6789999999996 57899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
|+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++..+.+.+.
T Consensus 142 L~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~ 215 (348)
T 3d31_A 142 LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215 (348)
T ss_dssp TTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999887654 78999999999999999999999999999987665443
No 55
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.5e-42 Score=365.28 Aligned_cols=200 Identities=21% Similarity=0.263 Sum_probs=172.9
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEee
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARY 469 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~ 469 (629)
||+++||+++|+. . +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|+
T Consensus 1 ml~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 1 MIEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp CEEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred CEEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 4899999999953 4 899999999999999999999999999999999999999999999873 248899
Q ss_pred ccchhcccCCCCCHHHHHhhcC---CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy10512 470 HQHLHELLDLDISPLDYMLQSF---PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546 (629)
Q Consensus 470 ~q~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDE 546 (629)
+|+.. +...+|+.+++.... ..... +++.++++.+||.+.. ++++.+|||||||||+|||||+.+|++|||||
T Consensus 78 ~Q~~~--l~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~-~~~~~~LSgGq~QRvalAraL~~~P~lLLLDE 153 (348)
T 3d31_A 78 YQNYS--LFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLL-DRNPLTLSGGEQQRVALARALVTNPKILLLDE 153 (348)
T ss_dssp CTTCC--CCTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTT-TSCGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred ecCcc--cCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99753 456778888765321 11112 6788999999998654 45779999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 547 PTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 547 PT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 154 P~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~~~ 216 (348)
T 3d31_A 154 PLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI-QVGKPEEIF 216 (348)
T ss_dssp SSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE-EEECHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 99999999999999988765 579999999999999999999999999997 468877654
No 56
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.6e-42 Score=350.03 Aligned_cols=202 Identities=26% Similarity=0.348 Sum_probs=167.8
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
-|+++||+++|+++...+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 48999999999322235899999999999999999999999999999999999999999999873 2488
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCccc----------ccCcCcCChhHHHHHHHHHHHcc
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQ----------VCPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgGqkqrv~lAral~~ 537 (629)
|++|... +. ..|+.+++....+. ...+.+.++++.+++..... ..++.+|||||||||+|||||+.
T Consensus 87 ~v~Q~~~--l~-~~tv~enl~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~ 162 (247)
T 2ff7_A 87 VVLQDNV--LL-NRSIIDNISLANPG-MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162 (247)
T ss_dssp EECSSCC--CT-TSBHHHHHTTTCTT-CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred EEeCCCc--cc-cccHHHHHhccCCC-CCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999753 22 35888887643322 23456777888888753322 23458999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|+||||||||++||+.++..+++.|.++ +.|||+||||++++. .||+|++|++|+++ ..|+++++.
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~l~ 231 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIV-EQGKHKELL 231 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEE-EEECHHHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 99999999999999999999999999876 579999999999986 49999999999997 468776654
No 57
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.3e-42 Score=354.73 Aligned_cols=204 Identities=20% Similarity=0.298 Sum_probs=167.0
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcC--CCCCccEEEECCce----------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGD--LTPSVGMVRKNSHL---------- 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~~---------- 464 (629)
.++|+++||++.|++ ..+|+|+||+|++|++++|+||||||||||+|+|+|+ ++|++|+|.+++..
T Consensus 18 ~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 18 SHMLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp --CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred CceEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 458999999999953 3589999999999999999999999999999999999 47899999998731
Q ss_pred --eEEeeccchhcccCCCCCHHHHHhh---------cCC--C-hhhHHHHHHHHHHcCCCCcccccCcC-cCChhHHHHH
Q psy10512 465 --RFARYHQHLHELLDLDISPLDYMLQ---------SFP--E-VKDREEMRKIIGRYGLTGRQQVCPIR-QLSDGQKCRV 529 (629)
Q Consensus 465 --~~~~~~q~~~~~~~~~~~~~~~~~~---------~~~--~-~~~~~~~~~~l~~~gl~~~~~~~~~~-~LSgGqkqrv 529 (629)
.++|++|... +....++.+++.. ... . ....+++.++++.+|+.....++++. +|||||||||
T Consensus 96 ~~~i~~v~Q~~~--l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv 173 (267)
T 2zu0_C 96 GEGIFMAFQYPV--EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 173 (267)
T ss_dssp HHTEEEECSSCC--CCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHH
T ss_pred hCCEEEEccCcc--ccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 2788888753 3345666665422 111 1 11235678899999996433455666 5999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhh-cCEEEEEeCCEEEEecCCHHHH
Q psy10512 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQV-AEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 530 ~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
+|||||+.+|+||||||||+|||+.++..+++.|.++ +.|||+||||++++..+ ||++++|++|+++ +.|++++.
T Consensus 174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 252 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTLV 252 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEE-EEECTTHH
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEE-EEcCHHHH
Confidence 9999999999999999999999999999999999886 45899999999999886 9999999999997 46776654
No 58
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-43 Score=360.23 Aligned_cols=211 Identities=20% Similarity=0.228 Sum_probs=161.7
Q ss_pred eEEEEeEEEEeC--C---eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFH--G---CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~--~---~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
+|+++||+++|+ + +++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+.. +.. . .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~--~~~--~-~- 75 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGER--KKG--Y-E- 75 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE--CCH--H-H-
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEE--Cch--H-H-
Confidence 589999999997 5 679999999999999999999999999999999999999999998875321 110 0 0
Q ss_pred hhhhhchHHHHHHHHHHHHH-hccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc-hhhhcccCCCChHHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQL-VACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK-EMQQKKTKDFSGGWRM 239 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~~~LSGGqrq 239 (629)
.+..+..+.+.. ..+.. .+..++..+..... .......+++.++++.+|+.. +..++++.+|||||||
T Consensus 76 --------~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~q 145 (266)
T 2yz2_A 76 --------IRRNIGIAFQYPEDQFFA-ERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKR 145 (266)
T ss_dssp --------HGGGEEEECSSGGGGCCC-SSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHH
T ss_pred --------hhhhEEEEeccchhhcCC-CcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHH
Confidence 000000011110 01112 23333332221111 222233567889999999962 5678999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
||+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||++++|++|+++..+.+
T Consensus 146 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 222 (266)
T 2yz2_A 146 RVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTR 222 (266)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999988654 68999999999999999999999999999876543
No 59
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=8.2e-43 Score=350.28 Aligned_cols=206 Identities=21% Similarity=0.242 Sum_probs=157.9
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
|+++|++++|++ +|+|+||+|++ +++||+||||||||||||+|+|+++|++|+|.+.+....-.......+.++.+
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q- 77 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ- 77 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS-
T ss_pred EEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC-
Confidence 789999999986 49999999999 99999999999999999999999999999988754321100000011111111
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
... ..+..+..++..+.... .......+++.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 78 ------------~~~-l~~~ltv~enl~~~~~~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral 141 (240)
T 2onk_A 78 ------------DYA-LFPHLSVYRNIAYGLRN--VERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARAL 141 (240)
T ss_dssp ------------SCC-CCTTSCHHHHHHTTCTT--SCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHHH
T ss_pred ------------CCc-cCCCCcHHHHHHHHHHH--cCCchHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHH
Confidence 001 11111222222221111 11122256788999999996 567899999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||++++|++|+++..+.+
T Consensus 142 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~ 211 (240)
T 2onk_A 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKL 211 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999988654 68999999999999999999999999999876543
No 60
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.3e-42 Score=351.39 Aligned_cols=200 Identities=20% Similarity=0.263 Sum_probs=162.5
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcC--CCCCccEEEECCce------------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGD--LTPSVGMVRKNSHL------------ 464 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~~------------ 464 (629)
+|+++||+++|+. ..+|+++||+|++|++++|+||||||||||+|+|+|+ ++|++|+|.+++..
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 6899999999953 3589999999999999999999999999999999999 88999999998731
Q ss_pred eEEeeccchhcccCCCCCHHHHHhhc------C-CC-hhhHHHHHHHHHHcCCCCcccccCcCc-CChhHHHHHHHHHHH
Q psy10512 465 RFARYHQHLHELLDLDISPLDYMLQS------F-PE-VKDREEMRKIIGRYGLTGRQQVCPIRQ-LSDGQKCRVVFAYLA 535 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~~~~~~~~~~------~-~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~-LSgGqkqrv~lAral 535 (629)
.++|++|... +....++.+++... . .. ....+.+.++++.+|+.....++++.+ |||||||||+|||||
T Consensus 81 ~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL 158 (250)
T 2d2e_A 81 GLFLAFQYPV--EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLL 158 (250)
T ss_dssp TBCCCCCCCC---CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHH
T ss_pred cEEEeccCCc--cccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH
Confidence 2567777653 33456777765321 1 11 122456788999999953334567788 999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhh-cCEEEEEeCCEEEEecCCHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQV-AEEIWICENGKVTKWEGNIL 603 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~ 603 (629)
+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+ ||+|++|++|+++ +.|+++
T Consensus 159 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~ 229 (250)
T 2d2e_A 159 VLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVV-ATGGPE 229 (250)
T ss_dssp HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEE-EEESHH
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEE-EEeCHH
Confidence 9999999999999999999999999999876 45899999999999888 5999999999997 467766
No 61
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.7e-42 Score=352.29 Aligned_cols=199 Identities=21% Similarity=0.346 Sum_probs=171.1
Q ss_pred eEEEEEEEEEEcCC--CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------eeEE-
Q psy10512 399 VIMVQNVSFRYSDD--GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------LRFA- 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~~~- 467 (629)
+|+++||++.|+.. ...+|+++||+|+ |++++|+||||||||||||+|+|++ |++|+|.+++. ..++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 48999999999631 0348999999999 9999999999999999999999999 99999999873 2588
Q ss_pred eeccchhcccCCCCCHHHHHhhcC--CChhhHHHHHHHHHHcCCC-CcccccCcCcCChhHHHHHHHHHHHccCCCEEEE
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSF--PEVKDREEMRKIIGRYGLT-GRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 544 (629)
|++|... + ..|+.+++.... .. ...+++.++++.+|+. .. ..+++.+|||||||||+|||||+.+|++|||
T Consensus 79 ~v~Q~~~--l--~~tv~enl~~~~~~~~-~~~~~~~~~l~~~gl~~~~-~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 152 (263)
T 2pjz_A 79 NLPEAYE--I--GVTVNDIVYLYEELKG-LDRDLFLEMLKALKLGEEI-LRRKLYKLSAGQSVLVRTSLALASQPEIVGL 152 (263)
T ss_dssp CCGGGSC--T--TSBHHHHHHHHHHHTC-CCHHHHHHHHHHTTCCGGG-GGSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EeCCCCc--c--CCcHHHHHHHhhhhcc-hHHHHHHHHHHHcCCChhH-hcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9998753 2 678888764321 11 2356788999999997 54 4567899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcC-EEEEEeCCEEEEecCCHHHHH
Q psy10512 545 DEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAE-EIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 545 DEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d-~i~~l~~G~i~~~~g~~~~~~ 606 (629)
||||+|||+.++..+.+.|.++..|||+||||++++..+|| ++++|++|+++ ..|+++++.
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~-~~g~~~~l~ 214 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ-GPISVSELL 214 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEE-EEEEHHHHH
T ss_pred ECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEE-EecCHHHHH
Confidence 99999999999999999999986699999999999999999 99999999997 467776653
No 62
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4.2e-42 Score=347.97 Aligned_cols=198 Identities=24% Similarity=0.319 Sum_probs=157.6
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEE----EeecccCCCCCcchh
Q psy10512 87 DVKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI----FHLTREMPASDKSAL 161 (629)
Q Consensus 87 ~i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i----~~~~~~~~~~~~~~~ 161 (629)
+|+++||+++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+ .++.++...
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~------ 77 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSS------ 77 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCC------
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCcc------
Confidence 599999999998 888999999999999999999999999999999999999999998852 222221110
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhh-c---cChhhHHHHHHHHHHhCCCCchhhhcccCCCChHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD-D---ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGW 237 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~---~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 237 (629)
++.. +..++........ . .......+++.++++.+|+. +..++++.+|||||
T Consensus 78 ----------------------~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq 133 (253)
T 2nq2_C 78 ----------------------PFAY-SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTSLSGGQ 133 (253)
T ss_dssp ----------------------SSCC-BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHH
T ss_pred ----------------------CCCC-CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhhCCHHH
Confidence 0011 1111111111000 0 11223456788999999996 57789999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCc
Q psy10512 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 238 rqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~ 313 (629)
||||+|||||+.+|+||||||||++||+.++..+++.|.++ +.|||+||||++++..+||++++|++|+ ++. |+
T Consensus 134 ~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~-g~ 211 (253)
T 2nq2_C 134 RQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKF-GE 211 (253)
T ss_dssp HHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEE-EE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Eec-CC
Confidence 99999999999999999999999999999999999988764 6899999999999999999999999999 655 44
Q ss_pred HHH
Q psy10512 314 YEA 316 (629)
Q Consensus 314 ~~~ 316 (629)
.++
T Consensus 212 ~~~ 214 (253)
T 2nq2_C 212 TRN 214 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 63
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.1e-42 Score=358.24 Aligned_cols=203 Identities=26% Similarity=0.340 Sum_probs=169.9
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
..|+++||+|+|+++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 52 ~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 52 GRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp CCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 469999999999644 45999999999999999999999999999999999999999999999873 258
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcc----------cccCcCcCChhHHHHHHHHHHHc
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQ----------QVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LSgGqkqrv~lAral~ 536 (629)
+|++|++. + +..|+.+++....+. ...+.+.++++.+++.... ...+..+|||||||||+|||||+
T Consensus 131 ~~v~Q~~~--l-f~~Tv~eNi~~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~ 206 (306)
T 3nh6_A 131 GVVPQDTV--L-FNDTIADNIRYGRVT-AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL 206 (306)
T ss_dssp EEECSSCC--C-CSEEHHHHHHTTSTT-CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred EEEecCCc--c-CcccHHHHHHhhccc-CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 99999863 2 245889988754432 2344566666666654322 12345789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
.+|+||||||||++||+.+...|.+.|.++ +.|+|+||||++.+.. ||+|++|++|+|+ ..|+++++.+
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv-~~G~~~el~~ 277 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIV-ERGRHEALLS 277 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999999876 5799999999999976 9999999999997 4788877654
No 64
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=7.5e-43 Score=356.37 Aligned_cols=216 Identities=21% Similarity=0.287 Sum_probs=160.1
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCCCceEEEeecccCCCCCcchhhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE--VPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~--~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
.+|+++||+++|+++++|+|+||+|++|++++|+||||||||||||+|+|++ .|++|+|.+.+.. +.....
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~--i~~~~~----- 91 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD--LLALSP----- 91 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEE--GGGSCH-----
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE--CCcCCH-----
Confidence 3599999999999999999999999999999999999999999999999984 5778888775321 110000
Q ss_pred hhhchHHHHH--HHHHHHHHhccCChhHHHHHHHHHhhh----h--ccChhhHHHHHHHHHHhCCCCchhhhcccC-CCC
Q psy10512 164 VMEVDEERVR--LEKLAEQLVACEDDESQEQLMDIYDRL----D--DISADTAEARAANILHGLGFTKEMQQKKTK-DFS 234 (629)
Q Consensus 164 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l----~--~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~-~LS 234 (629)
..+.. +..+.+....++..+..+++......+ . .....+..+++.++++.+|+.....++++. +||
T Consensus 92 -----~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LS 166 (267)
T 2zu0_C 92 -----EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFS 166 (267)
T ss_dssp -----HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCC
T ss_pred -----HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCC
Confidence 00000 000000000111112222222211111 1 122233456788999999996456788887 599
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhh-cceeEEEcCCeEEEE
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGV-CTNIIHLDKRKLKYY 310 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~-~d~ii~l~~G~i~~~ 310 (629)
|||||||+|||||+.+|+||||||||++||+.++.++++.|+++ +.|||+||||++++..+ ||++++|++|+++..
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999876 57999999999999886 999999999999987
Q ss_pred cCc
Q psy10512 311 GGN 313 (629)
Q Consensus 311 ~g~ 313 (629)
+.+
T Consensus 247 g~~ 249 (267)
T 2zu0_C 247 GDF 249 (267)
T ss_dssp ECT
T ss_pred cCH
Confidence 654
No 65
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5.2e-42 Score=350.77 Aligned_cols=204 Identities=25% Similarity=0.329 Sum_probs=167.8
Q ss_pred CeEEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------ee
Q psy10512 398 PVIMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 465 (629)
.+|+++||++.|+.+ ...+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 479999999999641 134899999999999999999999999999999999999999999999873 24
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcCCChhh---------HHHHHHHHHHc--CCCCcccccCcCcCChhHHHHHHHHHH
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSFPEVKD---------REEMRKIIGRY--GLTGRQQVCPIRQLSDGQKCRVVFAYL 534 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~--gl~~~~~~~~~~~LSgGqkqrv~lAra 534 (629)
++|++|... +. ..|+.+++......... ...+.++++.+ |+.... .+++.+|||||||||+||||
T Consensus 95 i~~v~Q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~-~~~~~~LSgGq~QRv~lAra 170 (271)
T 2ixe_A 95 VAAVGQEPL--LF-GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEV-GETGNQLSGGQRQAVALARA 170 (271)
T ss_dssp EEEECSSCC--CC-SSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBC-CGGGTTSCHHHHHHHHHHHH
T ss_pred EEEEecCCc--cc-cccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhh-cCCcCCCCHHHHHHHHHHHH
Confidence 889999763 22 35888887643221111 11234567777 675543 45679999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 535 l~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
|+.+|+||||||||++||+.++..+++.|.++ +.|||+||||++++.. ||+|++|++|+++ ..|+++++..
T Consensus 171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~ 245 (271)
T 2ixe_A 171 LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVC-EQGTHLQLME 245 (271)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999999999876 3589999999999975 9999999999997 4688776643
No 66
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-42 Score=349.06 Aligned_cols=203 Identities=21% Similarity=0.333 Sum_probs=168.6
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
+|+++||+++|+++. .+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 1 ml~~~~l~~~y~~~~-~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 1 MLSARHVDFAYDDSE-QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp CEEEEEEEECSSSSS-CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred CEEEEEEEEEeCCCC-ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999994233 4899999999999999999999999999999999999999999999763 2478
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccc----------cCcCcCChhHHHHHHHHHHHcc
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV----------CPIRQLSDGQKCRVVFAYLAWQ 537 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~~ 537 (629)
|++|... +. ..|+.+++..........+.+.++++.+++.+.... .++.+|||||||||+|||||+.
T Consensus 80 ~v~q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 80 FVSQDSA--IM-AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp EECCSSC--CC-CEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEcCCCc--cc-cccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 8888753 22 348888875431111234567888999998654322 2457999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 538 ~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 226 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA 226 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999999999999999998775 579999999999986 59999999999996 5788877643
No 67
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=4.7e-42 Score=346.46 Aligned_cols=197 Identities=28% Similarity=0.342 Sum_probs=169.8
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------eEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------RFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~~~ 467 (629)
+|+++||++. . +|+++||+|++|++++|+||||||||||||+|+|+++|+ |+|.+++.. .++
T Consensus 4 ~l~~~~l~~~-----~-vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES-----T-RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET-----T-TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE-----E-EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 7899999975 2 799999999999999999999999999999999999999 999998742 488
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC-------
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH------- 540 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~------- 540 (629)
|++|+.. +....|+.+++..........+.+.++++.+|+.+.. ++++.+|||||||||+|||||+.+|+
T Consensus 77 ~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ 153 (249)
T 2qi9_C 77 YLSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ 153 (249)
T ss_dssp EECSCCC--CCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGT-TSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred EECCCCc--cCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCe
Confidence 9999763 3456788888764321111256788999999997654 46789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 221 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEVL 221 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEEEHHHHS
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999776 568999999999999999999999999997 467776653
No 68
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.8e-43 Score=354.65 Aligned_cols=215 Identities=20% Similarity=0.223 Sum_probs=156.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR--EVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~--~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
+|+++||+++|+++++|+|+||+|++|++++|+||||||||||+++|+|+ +.|++|+|.+.+. ++........
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~--~~~~~~~~~~--- 77 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGE--NILELSPDER--- 77 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTE--ECTTSCHHHH---
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCE--ECCCCCHHHH---
Confidence 48999999999999999999999999999999999999999999999998 7788888877542 2211100000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHh-hhhc--cChhhHHHHHHHHHHhCCCCchhhhcccCC-CChHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD-RLDD--ISADTAEARAANILHGLGFTKEMQQKKTKD-FSGGWRMR 240 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~--~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~-LSGGqrqR 240 (629)
.+..+..+.+....+ +..+..++..... .... .......+++.++++.+|+..+..++++.+ ||||||||
T Consensus 78 -----~~~~i~~v~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQr 151 (250)
T 2d2e_A 78 -----ARKGLFLAFQYPVEV-PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKR 151 (250)
T ss_dssp -----HHTTBCCCCCCCC-C-CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHH
T ss_pred -----HhCcEEEeccCCccc-cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHH
Confidence 000000000000011 1122222222211 1111 122334567889999999954567899999 99999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhh-cceeEEEcCCeEEEEcC
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGV-CTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~-~d~ii~l~~G~i~~~~g 312 (629)
|+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+ ||+|++|++|+++..+.
T Consensus 152 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 152 NEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999998765 57999999999999988 59999999999997654
No 69
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.4e-41 Score=339.39 Aligned_cols=200 Identities=24% Similarity=0.363 Sum_probs=161.9
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhccc
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELL 477 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~ 477 (629)
.+|+++||+++|+.+...+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|... +
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~--~ 80 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSW--I 80 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCC--C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCc--c
Confidence 37999999999963233489999999999999999999999999999999999999999999988 4899999863 2
Q ss_pred CCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcc----------cccCcCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy10512 478 DLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQ----------QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP 547 (629)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 547 (629)
.. .|+.+++...... ......++++.+++.... ...++.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~~-~tv~enl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEP 157 (229)
T 2pze_A 81 MP-GTIKENIIFGVSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 157 (229)
T ss_dssp CS-BCHHHHHHTTSCC--CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred cC-CCHHHHhhccCCc--ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 23 4888887643221 122334455555543211 1224579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-hhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 548 TNHLDMETIDALADAI-NDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 548 T~~LD~~~~~~l~~~l-~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|++||+.++..+.+.+ .++ +.|||+||||++++. .||++++|++|+++ ..|+++++.
T Consensus 158 ts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 217 (229)
T 2pze_A 158 FGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQ 217 (229)
T ss_dssp TTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEE-EEECHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999974 444 568999999999986 59999999999997 468776653
No 70
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.7e-41 Score=345.00 Aligned_cols=203 Identities=23% Similarity=0.290 Sum_probs=158.7
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh
Q psy10512 87 DVKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y~~----~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
+|+++|++++|++ +++|+|+||+|+ |++++|+||||||||||||+|+|++ |++|++.+.+....... ....+.
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~-~~~~i~ 77 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIR-NYIRYS 77 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCS-CCTTEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchH-HhhheE
Confidence 3889999999987 789999999999 9999999999999999999999999 99999887543211000 011111
Q ss_pred -hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH
Q psy10512 163 -CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241 (629)
Q Consensus 163 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv 241 (629)
++.+.. .. ..+..++ ...+..+. ....+++.++++.+|+..+..++++.+|||||||||
T Consensus 78 ~~v~Q~~--------------~l-~~tv~en-l~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv 137 (263)
T 2pjz_A 78 TNLPEAY--------------EI-GVTVNDI-VYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLV 137 (263)
T ss_dssp ECCGGGS--------------CT-TSBHHHH-HHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHH
T ss_pred EEeCCCC--------------cc-CCcHHHH-HHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence 111110 01 1122222 22221111 112456889999999962467899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcc-eeEEEcCCeEEEEcC
Q psy10512 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCT-NIIHLDKRKLKYYGG 312 (629)
Q Consensus 242 ~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d-~ii~l~~G~i~~~~g 312 (629)
+|||||+.+|+||||||||++||+.++.++++.|+++..|||+||||++++..+|| ++++|++|+++..+.
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~ 209 (263)
T 2pjz_A 138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPIS 209 (263)
T ss_dssp HHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEEEE
T ss_pred HHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999886699999999999999999 999999999987653
No 71
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=341.33 Aligned_cols=200 Identities=22% Similarity=0.297 Sum_probs=161.1
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccC
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLD 478 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 478 (629)
+|+++||++.|+.....+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|... +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--~- 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAW--I- 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCC--C-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCc--C-
Confidence 5899999999963223489999999999999999999999999999999999999999999998 4899999853 2
Q ss_pred CCCCHHHHHhhcCCChhhHHHHHHHHHH------cCCCCc----ccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy10512 479 LDISPLDYMLQSFPEVKDREEMRKIIGR------YGLTGR----QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548 (629)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~gl~~~----~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT 548 (629)
...|+.+++....... .+...++++. +++... ...+++.+|||||||||+|||||+.+|+||||||||
T Consensus 78 ~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 78 QNDSLRENILFGCQLE--EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp CSEEHHHHHHTTSCCC--TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred CCcCHHHHhhCccccC--HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 3568888876432111 1122233333 333211 123567899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHh---hc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 549 NHLDMETIDALADAIN---DF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 549 ~~LD~~~~~~l~~~l~---~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
++||+.++..+.+.|. ++ +.|||+||||++++. .||++++|++|+++ ..|+++++..
T Consensus 156 s~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 217 (237)
T 2cbz_A 156 SAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKIS-EMGSYQELLA 217 (237)
T ss_dssp TTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEE-EEECHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEE-EeCCHHHHhh
Confidence 9999999999999984 33 568999999999985 69999999999997 4688776643
No 72
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.3e-42 Score=339.55 Aligned_cols=190 Identities=20% Similarity=0.291 Sum_probs=161.7
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce------eEEeecc
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL------RFARYHQ 471 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------~~~~~~q 471 (629)
.+|+++||+++|+. .+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.. .++|++|
T Consensus 9 ~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q 85 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85 (214)
T ss_dssp CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred ceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence 57999999999953 48999999999999999999999999999999999999999999998842 5899999
Q ss_pred chhcccCCCCCHHHHHhhc---CCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy10512 472 HLHELLDLDISPLDYMLQS---FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548 (629)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT 548 (629)
... +....|+.+++... .......+++.++++.+|+... .+++.+|||||||||+|||||+.+|++|||||||
T Consensus 86 ~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 86 EII--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp SCC--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred CCc--CCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC--CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 753 34556888776431 1101225678899999999765 5678999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy10512 549 NHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 549 ~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~i~~l~~G~i 595 (629)
++||+.++..+.+.|.++ +.|||+||||++++..+||+++++ .|+|
T Consensus 162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999998776 468999999999999999998854 4555
No 73
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1e-41 Score=344.00 Aligned_cols=207 Identities=23% Similarity=0.337 Sum_probs=152.5
Q ss_pred eeEEEEeEEEEe--CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 86 RDVKIANFSITF--HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 86 ~~i~i~nls~~y--~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
-+|+++||+++| +++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+.. +......
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~--~~~~~~~---- 79 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD--LALADPN---- 79 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE--TTTSCHH----
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE--hhhCCHH----
Confidence 369999999999 46789999999999999999999999999999999999999999988875422 1110000
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhh-----------cccCC
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ-----------KKTKD 232 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~-----------~~~~~ 232 (629)
..+..+..+.+... ..+. +..++..+.. .. ...+++.++++.+++. +..+ +++.+
T Consensus 80 -----~~~~~i~~v~Q~~~-l~~~-tv~enl~~~~--~~----~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~ 145 (247)
T 2ff7_A 80 -----WLRRQVGVVLQDNV-LLNR-SIIDNISLAN--PG----MSVEKVIYAAKLAGAH-DFISELREGYNTIVGEQGAG 145 (247)
T ss_dssp -----HHHHHEEEECSSCC-CTTS-BHHHHHTTTC--TT----CCHHHHHHHHHHHTCH-HHHHTSTTGGGCBCSTTTTC
T ss_pred -----HHHhcEEEEeCCCc-cccc-cHHHHHhccC--CC----CCHHHHHHHHHHhChH-HHHHhCcchhhhhhhCCCCC
Confidence 00001101111101 1111 2222222110 01 1134566677777774 3333 34689
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||||||||+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++. .||+|++|++|++++.
T Consensus 146 LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~ 224 (247)
T 2ff7_A 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQ 224 (247)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988765 789999999999986 5999999999999976
Q ss_pred cCc
Q psy10512 311 GGN 313 (629)
Q Consensus 311 ~g~ 313 (629)
+.+
T Consensus 225 g~~ 227 (247)
T 2ff7_A 225 GKH 227 (247)
T ss_dssp ECH
T ss_pred CCH
Confidence 543
No 74
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.7e-41 Score=341.75 Aligned_cols=203 Identities=25% Similarity=0.298 Sum_probs=167.1
Q ss_pred CeEEEEEEEEEEcCCC-CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------ee
Q psy10512 398 PVIMVQNVSFRYSDDG-PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~-~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 465 (629)
++|+++||++.|+... ..+|+++||+|++|++++|+||||||||||+++|+|+++| +|+|.+++. ..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 4699999999996431 2489999999999999999999999999999999999997 899999873 24
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcc----------cccCcCcCChhHHHHHHHHHHH
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQ----------QVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LSgGqkqrv~lAral 535 (629)
++|++|.+. +. ..|+.+++...... ...+.+.++++.+++.... ..+++.+|||||||||+|||||
T Consensus 95 i~~v~Q~~~--l~-~~tv~enl~~~~~~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL 170 (260)
T 2ghi_A 95 IGIVPQDTI--LF-NETIKYNILYGKLD-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCL 170 (260)
T ss_dssp EEEECSSCC--CC-SEEHHHHHHTTCTT-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHH
T ss_pred EEEEcCCCc--cc-ccCHHHHHhccCCC-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHH
Confidence 889999763 22 35888887643222 2345567778777764321 1245689999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 171 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 242 (260)
T 2ghi_A 171 LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIV-EKGTHKDLLK 242 (260)
T ss_dssp HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999999876 468999999999986 59999999999997 4688777643
No 75
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=6.4e-42 Score=350.11 Aligned_cols=211 Identities=24% Similarity=0.327 Sum_probs=155.4
Q ss_pred eeEEEEeEEEEeCC---eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh
Q psy10512 86 RDVKIANFSITFHG---CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 86 ~~i~i~nls~~y~~---~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
.+|+++||+++|++ +++|+||||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+.. +.....
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~--i~~~~~---- 88 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEP--LVQYDH---- 88 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE--GGGBCH----
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE--cccCCH----
Confidence 46999999999986 789999999999999999999999999999999999999999988875422 110000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccCh-hh-----HHHHHHHHHHhC--CCCchhhhcccCCCC
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISA-DT-----AEARAANILHGL--GFTKEMQQKKTKDFS 234 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-----~~~~~~~~L~~l--gl~~~~~~~~~~~LS 234 (629)
...+..+..+.+... ..+. +..++..+... .... .. ....+.++++.+ |+. ...++++.+||
T Consensus 89 -----~~~~~~i~~v~Q~~~-l~~~-tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LS 158 (271)
T 2ixe_A 89 -----HYLHTQVAAVGQEPL-LFGR-SFRENIAYGLT--RTPTMEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLS 158 (271)
T ss_dssp -----HHHHHHEEEECSSCC-CCSS-BHHHHHHTTCS--SCCCHHHHHHHHHHHTCHHHHHHSTTGGG-SBCCGGGTTSC
T ss_pred -----HHHhccEEEEecCCc-cccc-cHHHHHhhhcc--cCChHHHHHHHHHHHhHHHHHHhhhcchh-hhhcCCcCCCC
Confidence 000001111111111 1122 33333222111 1111 11 112345677777 674 45678899999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||||||+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++.. ||+|++|++|+++..
T Consensus 159 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~ 237 (271)
T 2ixe_A 159 GGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQ 237 (271)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999775 5799999999999875 999999999999876
Q ss_pred cCc
Q psy10512 311 GGN 313 (629)
Q Consensus 311 ~g~ 313 (629)
+.+
T Consensus 238 g~~ 240 (271)
T 2ixe_A 238 GTH 240 (271)
T ss_dssp ECH
T ss_pred CCH
Confidence 543
No 76
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=100.00 E-value=3.4e-43 Score=392.91 Aligned_cols=387 Identities=12% Similarity=0.055 Sum_probs=239.5
Q ss_pred EEEEeEEEEeCCeeeeEeeeE-EEeCCCEEEEECCCCCcHHHHHHH--HhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 88 VKIANFSITFHGCELLQDTML-ELNCGRRYGLLGLNGSGKSTLLAV--LGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~--L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
++.+++.+.+++.++|+++|| .|++|++++|+||||||||||+++ ++|+..|..|.+.+.+... ...
T Consensus 13 ~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~------~~~---- 82 (525)
T 1tf7_A 13 SEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET------PQD---- 82 (525)
T ss_dssp -CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC------HHH----
T ss_pred ccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC------HHH----
Confidence 445566666678889999999 999999999999999999999999 7899888888877753210 000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
.......+....+.... ...+....... ...+.++++.+++. +..++.+.+||||
T Consensus 83 --~~~~~~~~g~~~q~~~~-------------~~~l~~~~~~~-~~~~~~~l~~~~l~-~~~~~~~~~LS~g-------- 137 (525)
T 1tf7_A 83 --IIKNARSFGWDLAKLVD-------------EGKLFILDASP-DPEGQEVVGGFDLS-ALIERINYAIQKY-------- 137 (525)
T ss_dssp --HHHHHGGGTCCHHHHHH-------------TTSEEEEECCC-CSSCCSCCSSHHHH-HHHHHHHHHHHHH--------
T ss_pred --HHHHHHHcCCChHHhhc-------------cCcEEEEecCc-ccchhhhhcccCHH-HHHHHHHHHHHHc--------
Confidence 00000000000111000 00000000000 00111233444443 3456666777776
Q ss_pred HHHccCCCEEEEeCCCCC-----CCHHHHHHHHHHHhh---cCCEEEEEecCHHHH---------HhhcceeEEEcCCe-
Q psy10512 245 RALYVKPHLLLLDEPTNH-----LDLDACVWLEEELKT---YKRILVIISHSQDFL---------NGVCTNIIHLDKRK- 306 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~-----LD~~~~~~l~~~L~~---~~~tvIivsHd~~~l---------~~~~d~ii~l~~G~- 306 (629)
+|++|+|||||+. ||+..+..+.++++. .+.|||+|||+++++ ..+||+|++|++|+
T Consensus 138 -----~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~ 212 (525)
T 1tf7_A 138 -----RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLE 212 (525)
T ss_dssp -----TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECS
T ss_pred -----CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEcc
Confidence 4889999999984 688988888776654 488999999999984 66799999999843
Q ss_pred ---EEEEcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhcCCCcccc-cC
Q psy10512 307 ---LKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVT-TD 382 (629)
Q Consensus 307 ---i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~ 382 (629)
....-... ++. ... ...+ ..+.. ..
T Consensus 213 ~G~~~r~l~~~---------------------------------k~r-~~~----------------~~~~-~~~~~i~~ 241 (525)
T 1tf7_A 213 GERRRRTLEIL---------------------------------KLR-GTS----------------HMKG-EYPFTITD 241 (525)
T ss_dssp TTCCEEEEEEE---------------------------------EET-TSC----------------CCCS-EEEEEEET
T ss_pred CCceeEEEEEE---------------------------------ECC-CCC----------------CCCc-eEEEEEcC
Confidence 22110000 000 000 0000 00000 00
Q ss_pred cceEEeccCCCCCCCCeEEEEEEEEEEcCCCCeEeeee-eEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccE-EEE
Q psy10512 383 KTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNL-EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM-VRK 460 (629)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~il~~v-sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~-i~~ 460 (629)
.-+. .+|.......+.+.++++++.|+. |+.+ +..|.+|++++|+||||||||||+++|+|...|. |. +
T Consensus 242 ~gi~-v~p~~~~~~~~~~~~~~l~~g~~~-----ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~v-- 312 (525)
T 1tf7_A 242 HGIN-IFPLGAMRLTQRSSNVRVSSGVVR-----LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERA-- 312 (525)
T ss_dssp TEEE-ECCTTTCCSCCCCCCCEECCSCHH-----HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCE--
T ss_pred CCEE-EEeccccccccccccceeecChHH-----HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCE--
Confidence 0000 112111112345678888766531 3332 4589999999999999999999999999999885 54 2
Q ss_pred CCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 461 NSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 461 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
+.+.++.... ....... .+.. . +.+ +..+|+.... ..++.+|||||+||+++|+++..+|+
T Consensus 313 -----i~~~~ee~~~------~l~~~~~-~~g~--~---~~~-~~~~g~~~~~-~~~p~~LS~g~~q~~~~a~~l~~~p~ 373 (525)
T 1tf7_A 313 -----ILFAYEESRA------QLLRNAY-SWGM--D---FEE-MERQNLLKIV-CAYPESAGLEDHLQIIKSEINDFKPA 373 (525)
T ss_dssp -----EEEESSSCHH------HHHHHHH-TTSC--C---HHH-HHHTTSEEEC-CCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred -----EEEEEeCCHH------HHHHHHH-HcCC--C---HHH-HHhCCCEEEE-EeccccCCHHHHHHHHHHHHHhhCCC
Confidence 1222332111 0111111 1111 1 111 2245554333 34568999999999999999999999
Q ss_pred EEEEeCCCCCCCHH-----HHHHHHHHHh---hcCceEEEEecCH----------HHHHhhcCEEEEEeCCE
Q psy10512 541 LLLLDEPTNHLDME-----TIDALADAIN---DFEGGLVLVSHDF----------RLINQVAEEIWICENGK 594 (629)
Q Consensus 541 lLlLDEPT~~LD~~-----~~~~l~~~l~---~~~~~vi~vsHd~----------~~~~~~~d~i~~l~~G~ 594 (629)
+||+| ||++||.. .+..+.++++ +.+.|||+||||. ..+..+||+|++|++|+
T Consensus 374 llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 374 RIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999 99999998 8887776664 4467999999999 88889999999998875
No 77
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.6e-41 Score=340.03 Aligned_cols=203 Identities=22% Similarity=0.228 Sum_probs=155.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+|+++||+++ ++|+|+||+|++|++++|+||||||||||||+|+|+++|+ |+|.+.+.. +.....
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~--~~~~~~-------- 68 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQP--LEAWSA-------- 68 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEE--GGGSCH--------
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEE--CCcCCH--------
Confidence 5999999987 6999999999999999999999999999999999999999 988775322 110000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
...+..+..+.++.. ..+..+..++..+.. .... . .+++.++++.+|+. +..++++.+|||||||||+||||
T Consensus 69 -~~~~~~i~~v~q~~~-~~~~~tv~e~l~~~~-~~~~--~--~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAra 140 (249)
T 2qi9_C 69 -TKLALHRAYLSQQQT-PPFATPVWHYLTLHQ-HDKT--R--TELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAV 140 (249)
T ss_dssp -HHHHHHEEEECSCCC-CCTTCBHHHHHHTTC-SSTT--C--HHHHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHH
T ss_pred -HHHhceEEEECCCCc-cCCCCcHHHHHHHhh-ccCC--c--HHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHH
Confidence 000001101111111 111123333322211 1111 1 56788999999996 57889999999999999999999
Q ss_pred HccCCC-------EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 247 LYVKPH-------LLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 247 L~~~P~-------iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|+.+|+ ||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++++.+.
T Consensus 141 L~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 216 (249)
T 2qi9_C 141 VLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216 (249)
T ss_dssp HHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999 99999999999999999999988765 6899999999999999999999999999987643
No 78
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.3e-40 Score=344.75 Aligned_cols=209 Identities=20% Similarity=0.272 Sum_probs=151.5
Q ss_pred eeEEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 86 RDVKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 86 ~~i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
..|+++||+|+|+ +.++|+||||+|++|+++||+||||||||||+++|+|++.|++|+|.+.+.. +......
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~--i~~~~~~----- 124 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQD--ISQVTQA----- 124 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEE--TTSBCHH-----
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEE--cccCCHH-----
Confidence 4699999999995 5789999999999999999999999999999999999999999998875432 2111000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc----------hhhhcccCCCC
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK----------EMQQKKTKDFS 234 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~~LS 234 (629)
..+..+..+.++. ..++. +..++..+.. .... ...+.++++.+++.. ....+.+.+||
T Consensus 125 ----~~r~~i~~v~Q~~-~lf~~-Tv~eNi~~~~--~~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LS 192 (306)
T 3nh6_A 125 ----SLRSHIGVVPQDT-VLFND-TIADNIRYGR--VTAG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLS 192 (306)
T ss_dssp ----HHHHTEEEECSSC-CCCSE-EHHHHHHTTS--TTCC----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCC
T ss_pred ----HHhcceEEEecCC-ccCcc-cHHHHHHhhc--ccCC----HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCC
Confidence 0011111111111 11122 2222222111 0111 123444444444431 12345567999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcC
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g 312 (629)
|||||||+|||||+.+|+||||||||++||+.+...+.+.|.++ ++|+|+||||++.+.. ||+|++|++|+|++.|.
T Consensus 193 GGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~ 271 (306)
T 3nh6_A 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGR 271 (306)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988765 6899999999999986 99999999999998765
Q ss_pred cH
Q psy10512 313 NY 314 (629)
Q Consensus 313 ~~ 314 (629)
+.
T Consensus 272 ~~ 273 (306)
T 3nh6_A 272 HE 273 (306)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 79
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-41 Score=333.62 Aligned_cols=199 Identities=21% Similarity=0.289 Sum_probs=151.1
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
..|+++||+++|++ ++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+.... .....+.++.
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~---~~~~~i~~v~ 84 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT---KVKGKIFFLP 84 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG---GGGGGEEEEC
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh---hhcCcEEEEe
Confidence 36999999999998 9999999999999999999999999999999999999999999887543211 0000011110
Q ss_pred hchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 166 EVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
++... .+..+..++..+...+... ... .+++.++++.+|+.. . ++++.+|||||||||+|||
T Consensus 85 -------------q~~~~-~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~lar 146 (214)
T 1sgw_A 85 -------------EEIIV-PRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLAS 146 (214)
T ss_dssp -------------SSCCC-CTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHHH
T ss_pred -------------CCCcC-CCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHHHH
Confidence 01011 1111222222222111111 122 467889999999974 5 8899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeEEEcCCeE
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNIIHLDKRKL 307 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii~l~~G~i 307 (629)
||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||+++++ .|+|
T Consensus 147 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 147 TLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999999999999999999988765 589999999999999999998855 4454
No 80
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.9e-41 Score=337.99 Aligned_cols=206 Identities=21% Similarity=0.312 Sum_probs=152.5
Q ss_pred EEEEeEEEEe-CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeeccc-CCCCC-cchhhhh
Q psy10512 88 VKIANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTRE-MPASD-KSALTCV 164 (629)
Q Consensus 88 i~i~nls~~y-~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~-~~~~~-~~~~~~~ 164 (629)
|+++||+++| +++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+.... ..... ...+.++
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 8899999999 6678999999999999999999999999999999999999999999988643211 11000 0111111
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhh-----------cccCCC
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ-----------KKTKDF 233 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~-----------~~~~~L 233 (629)
.+ .. ...+. +..++..+. +. ......++.++++.+++.. ..+ +++.+|
T Consensus 82 ~q-------------~~-~l~~~-tv~enl~~~--~~---~~~~~~~~~~~l~~~~l~~-~~~~~~~gl~~~~~~~~~~L 140 (243)
T 1mv5_A 82 SQ-------------DS-AIMAG-TIRENLTYG--LE---GDYTDEDLWQVLDLAFARS-FVENMPDQLNTEVGERGVKI 140 (243)
T ss_dssp CC-------------SS-CCCCE-EHHHHTTSC--TT---SCSCHHHHHHHHHHHTCTT-TTTSSTTGGGCEESTTSBCC
T ss_pred cC-------------CC-ccccc-cHHHHHhhh--cc---CCCCHHHHHHHHHHhChHH-HHHhCccchhchhccCcCcC
Confidence 11 00 01122 222221111 00 0111345677788888753 333 456899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||||||||+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++. .||+|++|++|+++..
T Consensus 141 SgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~- 218 (243)
T 1mv5_A 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGS- 218 (243)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECCC-
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEe-
Confidence 999999999999999999999999999999999999999888765 789999999999986 5999999999999865
Q ss_pred CcHHH
Q psy10512 312 GNYEA 316 (629)
Q Consensus 312 g~~~~ 316 (629)
|+.+.
T Consensus 219 g~~~~ 223 (243)
T 1mv5_A 219 GKHNE 223 (243)
T ss_dssp SCHHH
T ss_pred CCHHH
Confidence 44443
No 81
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-40 Score=351.34 Aligned_cols=201 Identities=23% Similarity=0.344 Sum_probs=170.0
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
..|+++||+++|+.+...+|+++||+|++||+++|+||||||||||||+|+|+++ ++|+|.+++. ..+
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 4699999999995333458999999999999999999999999999999999998 8999999873 358
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCc-----------CChhHHHHHHHHHHH
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQ-----------LSDGQKCRVVFAYLA 535 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----------LSgGqkqrv~lAral 535 (629)
+|++|+.. + +..|+.+++.... ....+++.++++.+++.+... +++.+ |||||||||+|||||
T Consensus 97 g~v~Q~~~--l-f~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~-~~p~~l~~~i~~~g~~LSGGqrQRvalARAL 170 (390)
T 3gd7_A 97 GVIPQKVF--I-FSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIE-QFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170 (390)
T ss_dssp EEESCCCC--C-CSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHT-TSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred EEEcCCcc--c-CccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHh-hcccccccccccccccCCHHHHHHHHHHHHH
Confidence 99999863 2 2358888875221 234567889999999976544 45566 999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+.+|+||||||||++||+.++..+.+.|+++ +.|+|+||||++.+ ..||||++|++|+|+ ..|+++++..
T Consensus 171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~-~~g~~~el~~ 242 (390)
T 3gd7_A 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVR-QYDSILELYH 242 (390)
T ss_dssp HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEE-EESSHHHHHH
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999999876 46899999998766 569999999999997 4688877644
No 82
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.5e-39 Score=320.63 Aligned_cols=190 Identities=21% Similarity=0.301 Sum_probs=141.2
Q ss_pred eeEEEEeEEEEeC--CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe----ecccCCCCCcc
Q psy10512 86 RDVKIANFSITFH--GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH----LTREMPASDKS 159 (629)
Q Consensus 86 ~~i~i~nls~~y~--~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~----~~~~~~~~~~~ 159 (629)
.+|+++|++++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+ ..++.....
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~-- 82 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP-- 82 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCS--
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccC--
Confidence 3699999999995 57899999999999999999999999999999999999999999987642 222211100
Q ss_pred hhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCch----------hhhcc
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKE----------MQQKK 229 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~ 229 (629)
. +..++..+... .. ..+..++++.+++... ..+++
T Consensus 83 ---------------------------~-tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 127 (229)
T 2pze_A 83 ---------------------------G-TIKENIIFGVS---YD----EYRYRSVIKACQLEEDISKFAEKDNIVLGEG 127 (229)
T ss_dssp ---------------------------B-CHHHHHHTTSC---CC----HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTT
T ss_pred ---------------------------C-CHHHHhhccCC---cC----hHHHHHHHHHhCcHHHHHhCcccccccccCC
Confidence 0 11111110000 00 0011122222332110 12345
Q ss_pred cCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc--CCEEEEEecCHHHHHhhcceeEEEcCCe
Q psy10512 230 TKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL-KTY--KRILVIISHSQDFLNGVCTNIIHLDKRK 306 (629)
Q Consensus 230 ~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L-~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~ 306 (629)
+.+|||||||||+|||||+.+|+||||||||++||+.++..+++.+ .++ +.|||+||||++++. .||++++|++|+
T Consensus 128 ~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~ 206 (229)
T 2pze_A 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGS 206 (229)
T ss_dssp CTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTE
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCE
Confidence 6899999999999999999999999999999999999999999864 443 679999999999986 599999999999
Q ss_pred EEEEcCc
Q psy10512 307 LKYYGGN 313 (629)
Q Consensus 307 i~~~~g~ 313 (629)
++..+.+
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9876543
No 83
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.7e-40 Score=336.18 Aligned_cols=206 Identities=21% Similarity=0.309 Sum_probs=149.5
Q ss_pred eEEEEeEEEEeCC---eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 87 DVKIANFSITFHG---CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 87 ~i~i~nls~~y~~---~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
+|+++||+++|++ +++|+|+||+|++|++++|+|||||||||||++|+|+++| .|+|.+.+.. +......
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~--i~~~~~~---- 89 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKN--VNKYNRN---- 89 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEE--GGGBCHH----
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEE--hhhcCHH----
Confidence 5999999999986 4699999999999999999999999999999999999876 6877764321 1100000
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchh----------hhcccCCC
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEM----------QQKKTKDF 233 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~----------~~~~~~~L 233 (629)
..+..+..+.+... ..+. +..++..+. . ... ..+++.++++.+++.... .++++.+|
T Consensus 90 -----~~~~~i~~v~Q~~~-l~~~-tv~enl~~~-~---~~~--~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~L 156 (260)
T 2ghi_A 90 -----SIRSIIGIVPQDTI-LFNE-TIKYNILYG-K---LDA--TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156 (260)
T ss_dssp -----HHHTTEEEECSSCC-CCSE-EHHHHHHTT-C---TTC--CHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCC
T ss_pred -----HHhccEEEEcCCCc-cccc-CHHHHHhcc-C---CCC--CHHHHHHHHHHhCCHHHHHhccccccccccCCcCcC
Confidence 00000000111111 1122 333332211 1 111 123456677777764211 13567899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||||||||+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++. .||+|++|++|+++..+
T Consensus 157 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g 235 (260)
T 2ghi_A 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVEKG 235 (260)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988765 579999999999986 59999999999998765
Q ss_pred Cc
Q psy10512 312 GN 313 (629)
Q Consensus 312 g~ 313 (629)
.+
T Consensus 236 ~~ 237 (260)
T 2ghi_A 236 TH 237 (260)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 84
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=325.69 Aligned_cols=192 Identities=21% Similarity=0.308 Sum_probs=142.7
Q ss_pred eEEEEeEEEEeC--CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe----ecccCCCCCcch
Q psy10512 87 DVKIANFSITFH--GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH----LTREMPASDKSA 160 (629)
Q Consensus 87 ~i~i~nls~~y~--~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~----~~~~~~~~~~~~ 160 (629)
+|+++|++++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+ +.++....
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~---- 78 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQ---- 78 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCC----
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCC----
Confidence 489999999997 57899999999999999999999999999999999999999999987643 22221100
Q ss_pred hhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHH---HHHhCCCCc----hhhhcccCCC
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAAN---ILHGLGFTK----EMQQKKTKDF 233 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~L~~lgl~~----~~~~~~~~~L 233 (629)
.. +..++..+... .... ....+.+ +++.+++.+ ...++++.+|
T Consensus 79 -------------------------~~-tv~enl~~~~~---~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 128 (237)
T 2cbz_A 79 -------------------------ND-SLRENILFGCQ---LEEP-YYRSVIQACALLPDLEILPSGDRTEIGEKGVNL 128 (237)
T ss_dssp -------------------------SE-EHHHHHHTTSC---CCTT-HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCC
T ss_pred -------------------------Cc-CHHHHhhCccc---cCHH-HHHHHHHHHhhHHHHHhccccccccccCCCCCC
Confidence 00 11111111100 0111 1111111 122222211 1246778999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hc--CCEEEEEecCHHHHHhhcceeEEEcCCeEE
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK---TY--KRILVIISHSQDFLNGVCTNIIHLDKRKLK 308 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~---~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~ 308 (629)
||||||||+|||||+.+|+||||||||++||+.++..+++.|. ++ +.|||+||||++++. .||++++|++|+++
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~ 207 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKIS 207 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999883 22 689999999999985 79999999999998
Q ss_pred EEcCc
Q psy10512 309 YYGGN 313 (629)
Q Consensus 309 ~~~g~ 313 (629)
..+.+
T Consensus 208 ~~g~~ 212 (237)
T 2cbz_A 208 EMGSY 212 (237)
T ss_dssp EEECH
T ss_pred EeCCH
Confidence 76543
No 85
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=4.4e-39 Score=331.55 Aligned_cols=195 Identities=24% Similarity=0.341 Sum_probs=148.4
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhccc
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELL 477 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~ 477 (629)
++|+++||++.+ . .+|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.+++ .++|++|... +
T Consensus 39 ~~l~~~~l~~~~---~-~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--l 110 (290)
T 2bbs_A 39 DSLSFSNFSLLG---T-PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSW--I 110 (290)
T ss_dssp -----------C---C-CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCC--C
T ss_pred ceEEEEEEEEcC---c-eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCc--c
Confidence 469999999864 2 389999999999999999999999999999999999999999999988 4899999753 2
Q ss_pred CCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcc----------cccCcCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy10512 478 DLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQ----------QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP 547 (629)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 547 (629)
.. .|+.+++. .... ....+..+++.+++.... ...++.+|||||||||+|||||+.+|++||||||
T Consensus 111 ~~-~tv~enl~-~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEP 186 (290)
T 2bbs_A 111 MP-GTIKENII-GVSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186 (290)
T ss_dssp CS-SBHHHHHH-TTCC--CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred Cc-ccHHHHhh-Cccc--chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 22 48888886 3321 122344455555653221 1123579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-hhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 548 TNHLDMETIDALADAI-NDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 548 T~~LD~~~~~~l~~~l-~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
|+|||+.++..+++.+ .++ +.|||+||||++++. .||++++|++|+++ ..|+++++.
T Consensus 187 ts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~ 246 (290)
T 2bbs_A 187 FGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQ 246 (290)
T ss_dssp TTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEE-EEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEE-EeCCHHHHh
Confidence 9999999999999974 343 569999999999985 59999999999997 468877764
No 86
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.8e-40 Score=348.55 Aligned_cols=209 Identities=21% Similarity=0.347 Sum_probs=159.1
Q ss_pred eeEEEEeEEEEe--CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 86 RDVKIANFSITF--HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 86 ~~i~i~nls~~y--~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
..|+++||+|+| ++..+|+||||+|++||+++|+||||||||||||+|+|++. ++|+|.+.+. ++......
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~--~i~~~~~~---- 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGV--SWDSITLE---- 90 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSC--BTTSSCHH----
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCE--ECCcCChH----
Confidence 469999999999 66789999999999999999999999999999999999987 7788776532 22111100
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCC-----------
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD----------- 232 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~----------- 232 (629)
..+..+..+++... .++. +..++...+ .....+++.++++.+++. ++.++++.+
T Consensus 91 -----~~rr~ig~v~Q~~~-lf~~-tv~enl~~~-------~~~~~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~ 155 (390)
T 3gd7_A 91 -----QWRKAFGVIPQKVF-IFSG-TFRKNLDPN-------AAHSDQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCV 155 (390)
T ss_dssp -----HHHHTEEEESCCCC-CCSE-EHHHHHCTT-------CCSCHHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTT
T ss_pred -----HHhCCEEEEcCCcc-cCcc-CHHHHhhhc-------cccCHHHHHHHHHHhCCH-HHHhhccccccccccccccc
Confidence 00111111111111 1122 222222111 112245678899999996 678888888
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||||||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++.+. .||||++|++|+|+..
T Consensus 156 LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVIEENKVRQY 234 (390)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999875 579999999997664 6999999999999988
Q ss_pred cCcHHHH
Q psy10512 311 GGNYEAF 317 (629)
Q Consensus 311 ~g~~~~~ 317 (629)
+.+.+.|
T Consensus 235 g~~~el~ 241 (390)
T 3gd7_A 235 DSILELY 241 (390)
T ss_dssp SSHHHHH
T ss_pred CCHHHHH
Confidence 7765554
No 87
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.5e-38 Score=356.45 Aligned_cols=204 Identities=25% Similarity=0.363 Sum_probs=171.7
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
..|+++||+|+|+++...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 469999999999643234899999999999999999999999999999999999999999999873 258
Q ss_pred EeeccchhcccCCCCCHHHHHhhcC-CChhhHHHHHHHHHHcCCCCcccc----------cCcCcCChhHHHHHHHHHHH
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSF-PEVKDREEMRKIIGRYGLTGRQQV----------CPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral 535 (629)
+|++|++. + +..|+.+++.... +. ...+++.++++.+++.+.... .+..+|||||||||+|||||
T Consensus 420 ~~v~Q~~~--l-~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral 495 (582)
T 3b5x_A 420 ALVSQNVH--L-FNDTIANNIAYAAEGE-YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL 495 (582)
T ss_pred EEEcCCCc--c-ccccHHHHHhccCCCC-CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH
Confidence 99999864 2 2358888886543 22 345677888888887543221 23478999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+. .||+|++|++|+++. .|++++..+
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 567 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIE-RGRHADLLA 567 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999999876 568999999999986 699999999999974 788877643
No 88
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.5e-38 Score=357.22 Aligned_cols=204 Identities=26% Similarity=0.360 Sum_probs=170.5
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
..|+++||+|+|+++..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 459999999999754445899999999999999999999999999999999999999999999883 258
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCccc----------ccCcCcCChhHHHHHHHHHHHc
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQ----------VCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgGqkqrv~lAral~ 536 (629)
+|++|++. + ++.|+.+++..+.+. ...+++.++++..++.+... ..+..+|||||||||+|||||+
T Consensus 418 ~~v~Q~~~--l-~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~ 493 (578)
T 4a82_A 418 GLVQQDNI--L-FSDTVKENILLGRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 493 (578)
T ss_dssp EEECSSCC--C-CSSBHHHHHGGGCSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCc--c-CcccHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHH
Confidence 99999853 2 344899988765443 33456677777776543221 1234689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+.. ||+|++|++|+++ ..|++++..+
T Consensus 494 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~-~~g~~~el~~ 564 (578)
T 4a82_A 494 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIV-ETGTHRELIA 564 (578)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999999775 4699999999999865 9999999999997 4788877654
No 89
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4e-38 Score=356.02 Aligned_cols=204 Identities=25% Similarity=0.321 Sum_probs=171.4
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
..|+++||+|+|+++...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 469999999999643234899999999999999999999999999999999999999999999873 258
Q ss_pred EeeccchhcccCCCCCHHHHHhhcC-CChhhHHHHHHHHHHcCCCCccc----------ccCcCcCChhHHHHHHHHHHH
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSF-PEVKDREEMRKIIGRYGLTGRQQ----------VCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgGqkqrv~lAral 535 (629)
+|++|++. + +..|+.+++.... +. ...+++.++++.+++.+... ..+..+|||||||||+|||||
T Consensus 420 ~~v~Q~~~--l-~~~tv~eni~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral 495 (582)
T 3b60_A 420 ALVSQNVH--L-FNDTVANNIAYARTEE-YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_dssp EEECSSCC--C-CSSBHHHHHHTTTTSC-CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred eEEccCCc--C-CCCCHHHHHhccCCCC-CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 99999864 2 2358999886543 22 34567788888887753322 124579999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+. .||+|++|++|+++. .|+++++.+
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 567 (582)
T 3b60_A 496 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE-RGTHSELLA 567 (582)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred HhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE-ecCHHHHHH
Confidence 9999999999999999999999999999876 579999999999986 699999999999974 688877644
No 90
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.1e-38 Score=354.32 Aligned_cols=204 Identities=22% Similarity=0.293 Sum_probs=168.8
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
..|+++||+|+|+++..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 469999999999654445899999999999999999999999999999999999999999999873 358
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCc----------ccccCcCcCChhHHHHHHHHHHHc
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR----------QQVCPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~LSgGqkqrv~lAral~ 536 (629)
+|++|++. + +..|+.+++....+. ...+++.+.++..++.+. ....+..+|||||||||+|||||+
T Consensus 420 ~~v~Q~~~--l-f~~tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 420 SAVPQETV--L-FSGTIKENLKWGRED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp EEECSSCC--C-CSEEHHHHHTTTCSS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred EEECCCCc--C-cCccHHHHHhccCCC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 99999863 2 245888888654432 233445555555444211 122456799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+. .||+|++|++|+|++ .|+++++.+
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~-~g~~~el~~ 566 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAG-FGTHKELLE 566 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEE-EECHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999875 569999999999985 799999999999974 799887754
No 91
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=8e-38 Score=354.42 Aligned_cols=202 Identities=25% Similarity=0.365 Sum_probs=167.9
Q ss_pred EEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeEE
Q psy10512 400 IMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRFA 467 (629)
Q Consensus 400 l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~~ 467 (629)
|+++||+|+|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 9999999999643 235899999999999999999999999999999999999999999999873 2589
Q ss_pred eeccchhcccCCCCCHHHHHhhcCCC--hhhHHHHHHHHHHcCCCCccc------c----cCcCcCChhHHHHHHHHHHH
Q psy10512 468 RYHQHLHELLDLDISPLDYMLQSFPE--VKDREEMRKIIGRYGLTGRQQ------V----CPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 468 ~~~q~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~------~----~~~~~LSgGqkqrv~lAral 535 (629)
|++|++. + ++.|+.+++....+. ....+++.++++.+++.+... + .+..+|||||||||+|||||
T Consensus 422 ~v~Q~~~--l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral 498 (595)
T 2yl4_A 422 TVSQEPI--L-FSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 498 (595)
T ss_dssp EECSSCC--C-CSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHH
T ss_pred EEccCCc--c-cCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH
Confidence 9999863 2 235899988654332 134567888899888743211 1 22478999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+. .||+|++|++|+++. .|+++++.
T Consensus 499 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 569 (595)
T 2yl4_A 499 LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKITE-YGKHEELL 569 (595)
T ss_dssp HHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEEEE-EECSCC--
T ss_pred HcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999999875 579999999999986 599999999999974 57665543
No 92
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-38 Score=357.46 Aligned_cols=203 Identities=21% Similarity=0.299 Sum_probs=169.6
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
.-|+++||+|+|+++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 353 ~~i~~~~v~~~y~~~~-~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKK-PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCEEEEEEECCSSSSS-CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CeEEEEEEEEECCCCC-ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 3599999999996544 4899999999999999999999999999999999999999999999873 258
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCccccc----------CcCcCChhHHHHHHHHHHHc
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVC----------PIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgGqkqrv~lAral~ 536 (629)
+|++|++. + ++.|+.+++..+.+. ...+++.++++.+++.+..... ...+|||||||||+|||||+
T Consensus 432 ~~v~Q~~~--l-f~~tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 432 GIVLQDTI--L-FSTTVKENLKYGNPG-ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp EEECTTCC--C-CSSBHHHHHHSSSTT-CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCc--c-ccccHHHHHhcCCCC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 99999863 2 345899988754432 2334566777766664332221 23689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+.. ||+|++|++|+|+ ..|+++++.+
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~ 578 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIV-EMGKHDELIQ 578 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEE-ECSCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999998876 6799999999999965 9999999999997 4799887654
No 93
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=6.2e-37 Score=346.26 Aligned_cols=211 Identities=19% Similarity=0.270 Sum_probs=155.5
Q ss_pred eeEEEEeEEEEeCC--eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 86 RDVKIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 86 ~~i~i~nls~~y~~--~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
..|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|++.|++|+|.+++.+. ...+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~--~~~~~----- 412 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV--RDYKL----- 412 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEh--hhCCH-----
Confidence 46999999999974 6799999999999999999999999999999999999999999998865321 10000
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhh-----------cccCC
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ-----------KKTKD 232 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~-----------~~~~~ 232 (629)
...+..+..+.++... .+. +..++..... . ....++++.++++.+|+. +..+ +.+.+
T Consensus 413 ----~~~~~~i~~v~Q~~~l-~~~-tv~eni~~~~----~-~~~~~~~~~~~~~~~~l~-~~~~~~p~g~~t~~~~~~~~ 480 (582)
T 3b5x_A 413 ----TNLRRHFALVSQNVHL-FND-TIANNIAYAA----E-GEYTREQIEQAARQAHAM-EFIENMPQGLDTVIGENGTS 480 (582)
T ss_pred ----HHHhcCeEEEcCCCcc-ccc-cHHHHHhccC----C-CCCCHHHHHHHHHHCCCH-HHHHhCcccccchhcCCCCc
Confidence 0001111111111111 111 2222222111 0 011234567777777774 2333 34589
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++|++|++++.
T Consensus 481 LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIER 559 (582)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988775 689999999999987 6999999999999976
Q ss_pred cCcHHHH
Q psy10512 311 GGNYEAF 317 (629)
Q Consensus 311 ~g~~~~~ 317 (629)
| +.+++
T Consensus 560 g-~~~~l 565 (582)
T 3b5x_A 560 G-RHADL 565 (582)
T ss_pred C-CHHHH
Confidence 5 44433
No 94
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.4e-36 Score=312.81 Aligned_cols=186 Identities=22% Similarity=0.333 Sum_probs=127.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe----ecccCCCCCcchhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH----LTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~----~~~~~~~~~~~~~~ 162 (629)
.|+++||++.+ +.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+ +.++....
T Consensus 40 ~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~------ 111 (290)
T 2bbs_A 40 SLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIM------ 111 (290)
T ss_dssp ----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCC------
T ss_pred eEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccC------
Confidence 59999999863 6799999999999999999999999999999999999999999886532 22221110
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCch----------hhhcccCC
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKE----------MQQKKTKD 232 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~ 232 (629)
+.+..+++. . . ... ...+.++++.+++... ..++++.+
T Consensus 112 -----------------------~~tv~enl~--~--~-~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 159 (290)
T 2bbs_A 112 -----------------------PGTIKENII--G--V-SYD----EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 159 (290)
T ss_dssp -----------------------SSBHHHHHH--T--T-CCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CC
T ss_pred -----------------------cccHHHHhh--C--c-ccc----hHHHHHHHHHhChHHHHHhccccccchhcCccCc
Confidence 011111111 0 0 000 0111223333333211 12334689
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL-KTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKY 309 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L-~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~ 309 (629)
|||||||||+|||||+.+|+||||||||++||+.++..+++.+ .++ +.|||+||||++++. .||+|++|++|+++.
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~ 238 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF 238 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEE
Confidence 9999999999999999999999999999999999999999864 333 689999999999986 599999999999987
Q ss_pred EcCc
Q psy10512 310 YGGN 313 (629)
Q Consensus 310 ~~g~ 313 (629)
.+.+
T Consensus 239 ~g~~ 242 (290)
T 2bbs_A 239 YGTF 242 (290)
T ss_dssp EECH
T ss_pred eCCH
Confidence 6543
No 95
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-36 Score=343.99 Aligned_cols=211 Identities=20% Similarity=0.298 Sum_probs=151.0
Q ss_pred eeEEEEeEEEEeC--CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 86 RDVKIANFSITFH--GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 86 ~~i~i~nls~~y~--~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
..|+++|++|+|+ +.++|+|+||+|++||+++|+||||||||||+++|+|++.|++|+|.+++.+ +...+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~--i~~~~------ 411 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELD--VRTVK------ 411 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSB--GGGBC------
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEE--cccCC------
Confidence 4699999999995 4679999999999999999999999999999999999999999999875432 11100
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc----------hhhhcccCCC
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK----------EMQQKKTKDF 233 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~~L 233 (629)
....+..+..+.|+. ...+. +..++..... .... .+.+.+.++..++.+ ...++.+.+|
T Consensus 412 ---~~~~r~~i~~v~Q~~-~lf~~-tv~eni~~~~--~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~L 480 (587)
T 3qf4_A 412 ---LKDLRGHISAVPQET-VLFSG-TIKENLKWGR--EDAT----DDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNF 480 (587)
T ss_dssp ---HHHHHHHEEEECSSC-CCCSE-EHHHHHTTTC--SSCC----HHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSS
T ss_pred ---HHHHHhheEEECCCC-cCcCc-cHHHHHhccC--CCCC----HHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCc
Confidence 001111111111110 11122 2222221110 0111 122333344433321 2335667899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++|++|++++.|
T Consensus 481 SgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 481 SGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAGFG 559 (587)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988765 689999999999986 79999999999999875
Q ss_pred CcHHHH
Q psy10512 312 GNYEAF 317 (629)
Q Consensus 312 g~~~~~ 317 (629)
. ++++
T Consensus 560 ~-~~el 564 (587)
T 3qf4_A 560 T-HKEL 564 (587)
T ss_dssp C-HHHH
T ss_pred C-HHHH
Confidence 4 4443
No 96
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.1e-36 Score=344.23 Aligned_cols=208 Identities=21% Similarity=0.281 Sum_probs=154.6
Q ss_pred eeEEEEeEEEEeCC--eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 86 RDVKIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 86 ~~i~i~nls~~y~~--~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
..|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.+ +...+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~--~~~~~~----- 412 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD--LREYTL----- 412 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE--TTTBCH-----
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEE--ccccCH-----
Confidence 46999999999974 679999999999999999999999999999999999999999998875432 111000
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhh-----------cccCC
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ-----------KKTKD 232 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~-----------~~~~~ 232 (629)
...+..+..+.++.. ..+. +..++..... .. ...++++.++++.+|+. +..+ +.+.+
T Consensus 413 ----~~~~~~i~~v~Q~~~-l~~~-tv~eni~~~~-~~----~~~~~~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~ 480 (582)
T 3b60_A 413 ----ASLRNQVALVSQNVH-LFND-TVANNIAYAR-TE----EYSREQIEEAARMAYAM-DFINKMDNGLDTIIGENGVL 480 (582)
T ss_dssp ----HHHHHTEEEECSSCC-CCSS-BHHHHHHTTT-TS----CCCHHHHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCS
T ss_pred ----HHHHhhCeEEccCCc-CCCC-CHHHHHhccC-CC----CCCHHHHHHHHHHcCCH-HHHHhccccccccccCCCCC
Confidence 000111101111111 1122 3333322211 01 11235577788888875 3333 34589
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++|++|++++.
T Consensus 481 LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVER 559 (582)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999988765 789999999999886 6999999999999977
Q ss_pred cCc
Q psy10512 311 GGN 313 (629)
Q Consensus 311 ~g~ 313 (629)
|.+
T Consensus 560 g~~ 562 (582)
T 3b60_A 560 GTH 562 (582)
T ss_dssp ECH
T ss_pred cCH
Confidence 543
No 97
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=8.2e-37 Score=344.83 Aligned_cols=208 Identities=19% Similarity=0.281 Sum_probs=150.3
Q ss_pred eeEEEEeEEEEeCC--eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhh
Q psy10512 86 RDVKIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163 (629)
Q Consensus 86 ~~i~i~nls~~y~~--~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~ 163 (629)
..|+++|++|+|++ .++|+|+||+|++||++||+||||||||||+++|+|++.|++|+|.+++.+. ...+.
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~--~~~~~----- 410 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI--KDFLT----- 410 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG--GGSCH-----
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEh--hhCCH-----
Confidence 46999999999974 5799999999999999999999999999999999999999999988754321 11000
Q ss_pred hhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCch----------hhhcccCCC
Q psy10512 164 VMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKE----------MQQKKTKDF 233 (629)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~----------~~~~~~~~L 233 (629)
...+..+..+.++ ....+. +..++.... . ....++.+.++++.+++.+. ...+...+|
T Consensus 411 ----~~~r~~i~~v~Q~-~~l~~~-tv~eni~~~----~--~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~L 478 (578)
T 4a82_A 411 ----GSLRNQIGLVQQD-NILFSD-TVKENILLG----R--PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478 (578)
T ss_dssp ----HHHHHTEEEECSS-CCCCSS-BHHHHHGGG----C--SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS
T ss_pred ----HHHhhheEEEeCC-CccCcc-cHHHHHhcC----C--CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcC
Confidence 0001111001111 011122 222222111 0 01112345556666665321 122345689
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++.+.. ||+|++|++|++++.|
T Consensus 479 SgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVETG 557 (578)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988765 5799999999999864 9999999999999875
Q ss_pred Cc
Q psy10512 312 GN 313 (629)
Q Consensus 312 g~ 313 (629)
.+
T Consensus 558 ~~ 559 (578)
T 4a82_A 558 TH 559 (578)
T ss_dssp CH
T ss_pred CH
Confidence 44
No 98
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.4e-36 Score=344.23 Aligned_cols=212 Identities=24% Similarity=0.312 Sum_probs=154.5
Q ss_pred ee-EEEEeEEEEeCC---eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchh
Q psy10512 86 RD-VKIANFSITFHG---CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161 (629)
Q Consensus 86 ~~-i~i~nls~~y~~---~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~ 161 (629)
.. |+++|++|+|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++.+ +...+.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~--i~~~~~--- 413 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHD--IRQLNP--- 413 (595)
T ss_dssp CCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEE--TTTBCH---
T ss_pred CCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEE--hhhCCH---
Confidence 35 999999999975 469999999999999999999999999999999999999999998875432 211000
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchh------hh----cccC
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEM------QQ----KKTK 231 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~------~~----~~~~ 231 (629)
...+..+..+.++. ...+. +..++...... . .....++++.++++.+|+.+.. .+ +.+.
T Consensus 414 ------~~~~~~i~~v~Q~~-~l~~~-tv~eni~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~ 482 (595)
T 2yl4_A 414 ------VWLRSKIGTVSQEP-ILFSC-SIAENIAYGAD--D-PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGV 482 (595)
T ss_dssp ------HHHHHSEEEECSSC-CCCSS-BHHHHHHTTSS--S-TTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSC
T ss_pred ------HHHHhceEEEccCC-cccCC-CHHHHHhhcCC--C-ccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCC
Confidence 00010010011111 11122 33333222110 0 0011245677888888874211 12 2348
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEE
Q psy10512 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKY 309 (629)
Q Consensus 232 ~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~ 309 (629)
+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++|++|++++
T Consensus 483 ~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~ 561 (595)
T 2yl4_A 483 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKITE 561 (595)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988765 689999999999986 599999999999998
Q ss_pred EcCcH
Q psy10512 310 YGGNY 314 (629)
Q Consensus 310 ~~g~~ 314 (629)
.|.+.
T Consensus 562 ~g~~~ 566 (595)
T 2yl4_A 562 YGKHE 566 (595)
T ss_dssp EECSC
T ss_pred ECCHH
Confidence 75543
No 99
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.4e-37 Score=345.91 Aligned_cols=210 Identities=17% Similarity=0.244 Sum_probs=152.4
Q ss_pred eeEEEEeEEEEeCC-eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 86 RDVKIANFSITFHG-CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 86 ~~i~i~nls~~y~~-~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
..|+++|++|+|++ .++|+|+||+|++|+++||+||||||||||+++|+|++.|++|+|.+++.+. ...+.
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i--~~~~~------ 424 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDI--RKIKR------ 424 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEG--GGSCH------
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEh--hhCCH------
Confidence 35999999999974 6799999999999999999999999999999999999999999988754321 11000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcc-----------cCCC
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKK-----------TKDF 233 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~-----------~~~L 233 (629)
...+..+..+.++. ...+. +..++..... ... .++.+.++++.+++. +..++. ..+|
T Consensus 425 ---~~~r~~i~~v~Q~~-~lf~~-tv~eni~~~~--~~~----~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~~~~g~~L 492 (598)
T 3qf4_B 425 ---SSLRSSIGIVLQDT-ILFST-TVKENLKYGN--PGA----TDEEIKEAAKLTHSD-HFIKHLPEGYETVLTDNGEDL 492 (598)
T ss_dssp ---HHHHHHEEEECTTC-CCCSS-BHHHHHHSSS--TTC----CTTHHHHHTTTTTCH-HHHHTSTTGGGCBCHHHHTTS
T ss_pred ---HHHHhceEEEeCCC-ccccc-cHHHHHhcCC--CCC----CHHHHHHHHHHhCCH-HHHHhccccccchhcCCCCCC
Confidence 01111111111111 11122 2222222110 011 123355566666663 223332 3789
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
||||||||+|||||+.+|+||||||||++||+.+...+.+.|.++ ++|+|+||||++.+.. ||+|++|++|++++.|
T Consensus 493 SgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 571 (598)
T 3qf4_B 493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMG 571 (598)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEECS
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988765 7899999999999875 9999999999999765
Q ss_pred CcHHHH
Q psy10512 312 GNYEAF 317 (629)
Q Consensus 312 g~~~~~ 317 (629)
+++++
T Consensus 572 -~~~~l 576 (598)
T 3qf4_B 572 -KHDEL 576 (598)
T ss_dssp -CHHHH
T ss_pred -CHHHH
Confidence 44443
No 100
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.8e-35 Score=328.49 Aligned_cols=196 Identities=19% Similarity=0.315 Sum_probs=155.0
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEE----EeecccCCCCCcchh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI----FHLTREMPASDKSAL 161 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i----~~~~~~~~~~~~~~~ 161 (629)
..++++|+++.|++. .|+++||+|.+||++||+||||||||||+++|+|+++|+.|+|.+ .++.|+.....
T Consensus 286 ~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~---- 360 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADY---- 360 (538)
T ss_dssp EEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCC----
T ss_pred eEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCC----
Confidence 469999999999875 689999999999999999999999999999999999999998853 23333221100
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv 241 (629)
..+. .++...... .... ..+++.++++.+|+. +..++++.+|||||||||
T Consensus 361 ------------------------~~tv-~~~~~~~~~-~~~~---~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~qrv 410 (538)
T 1yqt_A 361 ------------------------EGTV-YELLSKIDA-SKLN---SNFYKTELLKPLGII-DLYDREVNELSGGELQRV 410 (538)
T ss_dssp ------------------------SSBH-HHHHHHHHH-HHHT---CHHHHHHTTTTTTCG-GGTTSBGGGCCHHHHHHH
T ss_pred ------------------------CCcH-HHHHHhhhc-cCCC---HHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHH
Confidence 0001 111100000 0000 124577899999996 678999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcC--CeEEEEcCcHH
Q psy10512 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDK--RKLKYYGGNYE 315 (629)
Q Consensus 242 ~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~--G~i~~~~g~~~ 315 (629)
+|||||+.+|+||||||||+|||+.++..+++.|+++ +.|||+||||++++..+||||++|++ |++...+.+.+
T Consensus 411 ~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 411 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 9999999999999999999999999999999988653 78999999999999999999999986 67776766644
Q ss_pred H
Q psy10512 316 A 316 (629)
Q Consensus 316 ~ 316 (629)
.
T Consensus 491 ~ 491 (538)
T 1yqt_A 491 M 491 (538)
T ss_dssp H
T ss_pred H
Confidence 3
No 101
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=7.6e-35 Score=338.93 Aligned_cols=200 Identities=27% Similarity=0.412 Sum_probs=163.3
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHc-CCCCCccEEEECCceeEEeeccchhccc
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG-DLTPSVGMVRKNSHLRFARYHQHLHELL 477 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G-~~~p~~G~i~~~~~~~~~~~~q~~~~~~ 477 (629)
.|...|+++.|++ ..+|+++||+|.+|++++|+||||||||||||+|+| .+ .|. ......+++|++|... .+
T Consensus 435 ~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~~~~~~~~~v~q~~~-~~ 507 (986)
T 2iw3_A 435 DLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PTQEECRTVYVEHDID-GT 507 (986)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CCTTTSCEEETTCCCC-CC
T ss_pred eeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-ccccceeEEEEccccc-cc
Confidence 4666799999953 358999999999999999999999999999999994 22 110 0011234677776532 23
Q ss_pred CCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q psy10512 478 DLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETID 557 (629)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~ 557 (629)
....++.+++...... . .+++.++|+.+||.....++++.+|||||||||+|||||+.+|+||||||||+|||+.++.
T Consensus 508 ~~~ltv~e~l~~~~~~-~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~ 585 (986)
T 2iw3_A 508 HSDTSVLDFVFESGVG-T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585 (986)
T ss_dssp CTTSBHHHHHHTTCSS-C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHH
T ss_pred ccCCcHHHHHHHhhcC-H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHH
Confidence 4567888877542212 1 5678899999999644456788999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 558 ALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 558 ~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
.|.+.|++.+.|||+||||++++..+||+|++|++|+++.+.|+++++.+
T Consensus 586 ~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 586 WLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999998777999999999999999999999999999767899888754
No 102
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.3e-35 Score=331.27 Aligned_cols=196 Identities=19% Similarity=0.316 Sum_probs=155.0
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEE----EeecccCCCCCcchh
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI----FHLTREMPASDKSAL 161 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i----~~~~~~~~~~~~~~~ 161 (629)
..++++|+++.|++. .|+++||+|.+||++||+||||||||||||+|+|++.|++|+|.+ .++.|+.....
T Consensus 356 ~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~---- 430 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEY---- 430 (607)
T ss_dssp EEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCC----
T ss_pred eEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCC----
Confidence 469999999999874 689999999999999999999999999999999999999998853 23333221100
Q ss_pred hhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH
Q psy10512 162 TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241 (629)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv 241 (629)
..+. .++...... ... ....++.++|+.+|+. +..++++.+|||||||||
T Consensus 431 ------------------------~~tv-~e~~~~~~~-~~~---~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~QRv 480 (607)
T 3bk7_A 431 ------------------------EGTV-YELLSKIDS-SKL---NSNFYKTELLKPLGII-DLYDRNVEDLSGGELQRV 480 (607)
T ss_dssp ------------------------SSBH-HHHHHHHHH-HHH---HCHHHHHHTHHHHTCT-TTTTSBGGGCCHHHHHHH
T ss_pred ------------------------CCcH-HHHHHhhhc-cCC---CHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHH
Confidence 0001 111100000 000 0124577889999996 578999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcC--CeEEEEcCcHH
Q psy10512 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDK--RKLKYYGGNYE 315 (629)
Q Consensus 242 ~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~--G~i~~~~g~~~ 315 (629)
+|||||+.+|+||||||||+|||+.++..+++.|+++ +.|||+||||++++..+||||++|++ |.+...+.+.+
T Consensus 481 ~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 9999999999999999999999999999999988754 78999999999999999999999986 77776666644
Q ss_pred H
Q psy10512 316 A 316 (629)
Q Consensus 316 ~ 316 (629)
.
T Consensus 561 ~ 561 (607)
T 3bk7_A 561 M 561 (607)
T ss_dssp H
T ss_pred H
Confidence 3
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.3e-35 Score=324.83 Aligned_cols=195 Identities=20% Similarity=0.241 Sum_probs=150.9
Q ss_pred eeEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe-----ecccCCCCCcch
Q psy10512 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH-----LTREMPASDKSA 160 (629)
Q Consensus 86 ~~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~-----~~~~~~~~~~~~ 160 (629)
..++++|+++.|++. .|.++||+|++||++||+||||||||||+++|+|+++|++|+|.+.. ..+.....
T Consensus 268 ~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~---- 342 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPN---- 342 (538)
T ss_dssp EEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCC----
T ss_pred ceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccc----
Confidence 358999999999884 57888999999999999999999999999999999999999986421 11111000
Q ss_pred hhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHH
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqR 240 (629)
...+..+++...... ... .....+.++++.+|+. +..++++.+||||||||
T Consensus 343 ------------------------~~~tv~~~l~~~~~~--~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QR 393 (538)
T 3ozx_A 343 ------------------------YDGTVQQYLENASKD--ALS--TSSWFFEEVTKRLNLH-RLLESNVNDLSGGELQK 393 (538)
T ss_dssp ------------------------CSSBHHHHHHHHCSS--TTC--TTSHHHHHTTTTTTGG-GCTTSBGGGCCHHHHHH
T ss_pred ------------------------cCCCHHHHHHHhhhh--ccc--hhHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHH
Confidence 000111111111000 000 1124567889999996 67899999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcC--CeEEEEcCcH
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDK--RKLKYYGGNY 314 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~--G~i~~~~g~~ 314 (629)
|+|||||+.+|+||||||||++||+.++..+++.|+++ +.|||+||||++++..+||||++|++ |.+...+.+.
T Consensus 394 v~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~ 473 (538)
T 3ozx_A 394 LYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPV 473 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChH
Confidence 99999999999999999999999999999999888654 78999999999999999999999986 4454444443
No 104
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8.4e-35 Score=354.19 Aligned_cols=204 Identities=24% Similarity=0.285 Sum_probs=167.2
Q ss_pred CeEEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------ee
Q psy10512 398 PVIMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LR 465 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 465 (629)
.-|+++||+|+|+.. ..++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.++|. ..
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 359999999999643 234899999999999999999999999999999999999999999999884 25
Q ss_pred EEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcc----------cccCcCcCChhHHHHHHHHHHH
Q psy10512 466 FARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQ----------QVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 466 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LSgGqkqrv~lAral 535 (629)
++|++|++. + +..|+.+++..+.+. ...+++.+.++..++.+.. ......+|||||||||+|||||
T Consensus 466 i~~v~Q~~~--l-~~~ti~eNi~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal 541 (1284)
T 3g5u_A 466 IGVVSQEPV--L-FATTIAENIRYGRED-VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541 (1284)
T ss_dssp EEEECSSCC--C-CSSCHHHHHHHHCSS-CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHH
T ss_pred eEEEcCCCc--c-CCccHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHH
Confidence 899999863 2 345899988755433 2344555555554432111 1124468999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHH
Q psy10512 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607 (629)
Q Consensus 536 ~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 607 (629)
+.+|+||||||||++||+++...+.+.+... +.|+|+|||+++.+.. ||+|++|++|+|+ ..|+++++.+
T Consensus 542 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~-~~g~~~~l~~ 613 (1284)
T 3g5u_A 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIV-EQGNHDELMR 613 (1284)
T ss_dssp HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCC-CEECHHHHHH
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999988764 5799999999999976 9999999999997 4788877644
No 105
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.9e-34 Score=351.98 Aligned_cols=202 Identities=26% Similarity=0.320 Sum_probs=171.4
Q ss_pred eEEEEEEEEEEcCC-CCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc-----------eeE
Q psy10512 399 VIMVQNVSFRYSDD-GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----------LRF 466 (629)
Q Consensus 399 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~~ 466 (629)
-|+++||+|+|+.. ..++|+|+||+|++|+.++||||+|||||||+++|.|+++|++|+|.++|. ..+
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 59999999999642 335899999999999999999999999999999999999999999999983 369
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccc----------cCcCcCChhHHHHHHHHHHHc
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV----------CPIRQLSDGQKCRVVFAYLAW 536 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~ 536 (629)
+|++|++. -++.|+.+++..+.+. ..++++.++++..++.+.... .....||||||||++||||++
T Consensus 495 ~~v~Q~~~---Lf~~TI~eNI~~g~~~-~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~ 570 (1321)
T 4f4c_A 495 AVVSQEPA---LFNCTIEENISLGKEG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570 (1321)
T ss_dssp EEECSSCC---CCSEEHHHHHHTTCTT-CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred cccCCcce---eeCCchhHHHhhhccc-chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence 99999863 3566899998766544 356678888877765432211 123579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
++|+|||||||||+||+++...+.+.|.++ +.|+|+|||++..+. .||+|++|++|+|++ .|+++++.
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive-~Gth~eL~ 640 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVE-VGDHRALM 640 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEE-EECHHHHH
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeeec-cCCHHHHH
Confidence 999999999999999999999999999876 679999999999985 599999999999985 78887753
No 106
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-34 Score=319.58 Aligned_cols=194 Identities=16% Similarity=0.269 Sum_probs=149.8
Q ss_pred EeEEEEeCC-eeeeEeeeEEEeCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCCCce----EEEeecccCCCCCcch
Q psy10512 91 ANFSITFHG-CELLQDTMLELNCG-----RRYGLLGLNGSGKSTLLAVLGNREVPVPDHI----DIFHLTREMPASDKSA 160 (629)
Q Consensus 91 ~nls~~y~~-~~~L~~vsl~i~~G-----e~~~liG~NGsGKSTLlk~L~g~~~p~~g~i----~i~~~~~~~~~~~~~~ 160 (629)
.+++++|++ ..+++++||++.+| |++||+|||||||||||++|+|+++|++|.. .+.+..+......
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~--- 426 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKF--- 426 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCC---
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccC---
Confidence 567889976 45899999999999 8899999999999999999999999998862 1222222211100
Q ss_pred hhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHH
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqR 240 (629)
..+..+.+. ..+.. .......+.++++.+|+. +..++++.+||||||||
T Consensus 427 -------------------------~~tv~e~~~---~~~~~--~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGqkQR 475 (608)
T 3j16_B 427 -------------------------PGTVRQLFF---KKIRG--QFLNPQFQTDVVKPLRID-DIIDQEVQHLSGGELQR 475 (608)
T ss_dssp -------------------------CSBHHHHHH---HHCSS--TTTSHHHHHHTHHHHTST-TTSSSBSSSCCHHHHHH
T ss_pred -------------------------CccHHHHHH---HHhhc--ccccHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHH
Confidence 000011100 00000 001124567789999997 57899999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEcC--CeEEEEcCcH
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLDK--RKLKYYGGNY 314 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~~--G~i~~~~g~~ 314 (629)
|+|||||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||||++|++ |++...+.+.
T Consensus 476 v~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~ 555 (608)
T 3j16_B 476 VAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPE 555 (608)
T ss_dssp HHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCE
T ss_pred HHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChH
Confidence 99999999999999999999999999999988887654 78999999999999999999999996 8888877776
Q ss_pred HHHH
Q psy10512 315 EAFC 318 (629)
Q Consensus 315 ~~~~ 318 (629)
+.+.
T Consensus 556 ~~~~ 559 (608)
T 3j16_B 556 SLLT 559 (608)
T ss_dssp EHHH
T ss_pred HHhh
Confidence 6543
No 107
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.98 E-value=1.5e-32 Score=315.39 Aligned_cols=191 Identities=19% Similarity=0.194 Sum_probs=130.3
Q ss_pred eEeeeeeEEEeCCCEEEEECCCCCchHHHH---------------------HHHHcCCCCCccEEE-------ECCc---
Q psy10512 415 WIYRNLEFGIDLDTRLALVGPNGAGKSTLL---------------------NLIYGDLTPSVGMVR-------KNSH--- 463 (629)
Q Consensus 415 ~il~~vsl~i~~Ge~i~ivG~NGsGKSTLl---------------------k~l~G~~~p~~G~i~-------~~~~--- 463 (629)
.+|+||||+|++||++||+||||||||||+ +++.|+..|+.|.|. +.+.
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 379999999999999999999999999998 999999999966553 3321
Q ss_pred ----eeEEeeccchhc-----------------ccCCCCCHHHHHhhc--CC--Ch---hhH------HHHHHHHHHcCC
Q psy10512 464 ----LRFARYHQHLHE-----------------LLDLDISPLDYMLQS--FP--EV---KDR------EEMRKIIGRYGL 509 (629)
Q Consensus 464 ----~~~~~~~q~~~~-----------------~~~~~~~~~~~~~~~--~~--~~---~~~------~~~~~~l~~~gl 509 (629)
..+++++|.... .....+++.+++... .. .. ... .....+++.+||
T Consensus 112 ~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL 191 (670)
T 3ux8_A 112 RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGL 191 (670)
T ss_dssp ---CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTC
T ss_pred ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 112333332110 001123333333210 00 00 000 111235888999
Q ss_pred CCcccccCcCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhc
Q psy10512 510 TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH--LLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVA 584 (629)
Q Consensus 510 ~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~ 584 (629)
.+...++++.+|||||||||+|||||+.+|+ ||||||||+|||+.++..|++.|+++ +.|||+||||++++. .|
T Consensus 192 ~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~ 270 (670)
T 3ux8_A 192 DYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AA 270 (670)
T ss_dssp TTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HC
T ss_pred chhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hC
Confidence 7654567889999999999999999999998 99999999999999999999998765 579999999999875 59
Q ss_pred CEEEEE------eCCEEEEecCCHHHHHH
Q psy10512 585 EEIWIC------ENGKVTKWEGNILDYKE 607 (629)
Q Consensus 585 d~i~~l------~~G~i~~~~g~~~~~~~ 607 (629)
|+|++| ++|+++ +.|+++++..
T Consensus 271 d~ii~l~~g~~~~~G~i~-~~g~~~~~~~ 298 (670)
T 3ux8_A 271 DYLIDIGPGAGIHGGEVV-AAGTPEEVMN 298 (670)
T ss_dssp SEEEEECSSSGGGCCSEE-EEECHHHHHT
T ss_pred CEEEEecccccccCCEEE-EecCHHHHhc
Confidence 999999 899997 5788877643
No 108
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=1.6e-29 Score=291.79 Aligned_cols=104 Identities=23% Similarity=0.305 Sum_probs=92.1
Q ss_pred HHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEE
Q psy10512 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVK---PHLLLLDEPTNHLDLDACVWLEEELKT---YKRIL 282 (629)
Q Consensus 209 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~---P~iLLLDEPT~~LD~~~~~~l~~~L~~---~~~tv 282 (629)
..++.++|+.+||.....++++.+|||||||||+||++|+.+ |+||||||||+|||+.++..|++.|.+ .+.||
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tV 786 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTV 786 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 346789999999974346889999999999999999999996 799999999999999999999888764 47899
Q ss_pred EEEecCHHHHHhhcceeEEE------cCCeEEEEcCc
Q psy10512 283 VIISHSQDFLNGVCTNIIHL------DKRKLKYYGGN 313 (629)
Q Consensus 283 IivsHd~~~l~~~~d~ii~l------~~G~i~~~~g~ 313 (629)
|+||||++++ .+||+|++| ++|+|++.+.+
T Consensus 787 IvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 787 IAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp EEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred EEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 9999999999 789999999 79999876543
No 109
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=6.5e-29 Score=289.03 Aligned_cols=106 Identities=28% Similarity=0.388 Sum_probs=93.5
Q ss_pred HHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEE
Q psy10512 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP---HLLLLDEPTNHLDLDACVWLEEELKTY---KRIL 282 (629)
Q Consensus 209 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P---~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tv 282 (629)
..++.++|+.+||.....++++.+|||||||||+|||||+.+| +||||||||+|||+.++..|++.|.++ +.||
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV 861 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV 861 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 3567789999999654567899999999999999999999875 799999999999999999999987654 7899
Q ss_pred EEEecCHHHHHhhcceeEEE------cCCeEEEEcCcHH
Q psy10512 283 VIISHSQDFLNGVCTNIIHL------DKRKLKYYGGNYE 315 (629)
Q Consensus 283 IivsHd~~~l~~~~d~ii~l------~~G~i~~~~g~~~ 315 (629)
|+||||++++.. ||+|++| ++|+|++.|.+.+
T Consensus 862 IvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpee 899 (916)
T 3pih_A 862 IVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEE 899 (916)
T ss_dssp EEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred EEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHH
Confidence 999999999865 9999999 8999998876544
No 110
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-32 Score=298.78 Aligned_cols=196 Identities=12% Similarity=0.088 Sum_probs=155.7
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCcc-E-EEECCc--eeEEeeccc
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG-M-VRKNSH--LRFARYHQH 472 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G-~-i~~~~~--~~~~~~~q~ 472 (629)
.++++++||++.|+ ++||++.+|++++|+||||||||||+|+|+|+++|++| + |.+++. ..+++++|.
T Consensus 116 ~~mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~ 187 (460)
T 2npi_A 116 HTMKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGC 187 (460)
T ss_dssp CTHHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSC
T ss_pred cchhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccc
Confidence 46788999988773 68999999999999999999999999999999999999 8 988763 357788887
Q ss_pred hhcc-cCCCCCHHHHHhhcC--CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHH--HccCCCE----EE
Q psy10512 473 LHEL-LDLDISPLDYMLQSF--PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYL--AWQAPHL----LL 543 (629)
Q Consensus 473 ~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAra--l~~~p~l----Ll 543 (629)
.... .....++.+++.... ......+.+..+++.+|+.... . +.+|||||||||+|||+ |+.+|++ ||
T Consensus 188 ~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~-~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLl 264 (460)
T 2npi_A 188 ISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERIN-E--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCI 264 (460)
T ss_dssp CEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGG-G--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEE
T ss_pred hhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCccc-c--hhhhhHHHHHHHHHHHHHHhccCcccCcceEE
Confidence 5321 112234443331100 0101123345678888987643 2 57999999999999999 9999999 99
Q ss_pred EeC-CCCCCCHHHHHHHHHHHhhcCceEEEEecCHH------HHHhhcCE-----EEEEe-CCEEEEecCCHHHHH
Q psy10512 544 LDE-PTNHLDMETIDALADAINDFEGGLVLVSHDFR------LINQVAEE-----IWICE-NGKVTKWEGNILDYK 606 (629)
Q Consensus 544 LDE-PT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~------~~~~~~d~-----i~~l~-~G~i~~~~g~~~~~~ 606 (629)
||| ||++||+. ...|.+++++++.++|+||||.+ ++..+||+ |++|+ +|+++ .|+.++..
T Consensus 265 LDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~~~ 337 (460)
T 2npi_A 265 VDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVYKR 337 (460)
T ss_dssp EECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHHHH
T ss_pred EeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHHHh
Confidence 999 99999999 88888888888889999999987 88899999 99999 99996 68876653
No 111
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.95 E-value=4.5e-28 Score=279.92 Aligned_cols=105 Identities=27% Similarity=0.358 Sum_probs=91.6
Q ss_pred HHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEE
Q psy10512 210 ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP---HLLLLDEPTNHLDLDACVWLEEELKTY---KRILV 283 (629)
Q Consensus 210 ~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P---~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvI 283 (629)
.++.++|+.+||.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|++.|.++ +.|||
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 902 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 902 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 345789999999743578899999999999999999999865 999999999999999999999887654 78999
Q ss_pred EEecCHHHHHhhcceeEEE------cCCeEEEEcCcHH
Q psy10512 284 IISHSQDFLNGVCTNIIHL------DKRKLKYYGGNYE 315 (629)
Q Consensus 284 ivsHd~~~l~~~~d~ii~l------~~G~i~~~~g~~~ 315 (629)
+||||++++ .+||+|++| ++|++++.+.+.+
T Consensus 903 visHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~e 939 (972)
T 2r6f_A 903 VIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEE 939 (972)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHH
T ss_pred EEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHH
Confidence 999999998 579999999 7899997755433
No 112
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=8e-28 Score=278.86 Aligned_cols=103 Identities=24% Similarity=0.306 Sum_probs=90.4
Q ss_pred HHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEE
Q psy10512 210 ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP---HLLLLDEPTNHLDLDACVWLEEELKT---YKRILV 283 (629)
Q Consensus 210 ~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P---~iLLLDEPT~~LD~~~~~~l~~~L~~---~~~tvI 283 (629)
.++.++|+.+||.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|++.|.+ .+.|||
T Consensus 841 ~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 920 (993)
T 2ygr_A 841 HRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVI 920 (993)
T ss_dssp HHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 345789999999643578899999999999999999999865 99999999999999999999988765 478999
Q ss_pred EEecCHHHHHhhcceeEEE------cCCeEEEEcCc
Q psy10512 284 IISHSQDFLNGVCTNIIHL------DKRKLKYYGGN 313 (629)
Q Consensus 284 ivsHd~~~l~~~~d~ii~l------~~G~i~~~~g~ 313 (629)
+||||++++ .+||+|++| ++|++++.+.+
T Consensus 921 visHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~ 955 (993)
T 2ygr_A 921 VIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTP 955 (993)
T ss_dssp EECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECH
T ss_pred EEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCH
Confidence 999999998 579999999 68999876544
No 113
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=4.5e-28 Score=262.80 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=72.3
Q ss_pred CChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEE----cC
Q psy10512 233 FSGGWRMRIALARALYVKP--HLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHL----DK 304 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P--~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l----~~ 304 (629)
|||||||||+||++|+.+| +||||||||||||+.++.+|.+.|+++ +.|||+||||++++ .+||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999999887 58999999999887 579999999 99
Q ss_pred CeEEEE
Q psy10512 305 RKLKYY 310 (629)
Q Consensus 305 G~i~~~ 310 (629)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 988754
No 114
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=7.7e-28 Score=260.97 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=71.4
Q ss_pred CChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEE----eC
Q psy10512 521 LSDGQKCRVVFAYLAWQAP--HLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWIC----EN 592 (629)
Q Consensus 521 LSgGqkqrv~lAral~~~p--~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l----~~ 592 (629)
|||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++ +.+||+||||++++ .+||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 5999999999999999999 999999999999999999999999988 47999999999887 579999999 99
Q ss_pred CEEEE
Q psy10512 593 GKVTK 597 (629)
Q Consensus 593 G~i~~ 597 (629)
|+++.
T Consensus 375 G~~~~ 379 (415)
T 4aby_A 375 GRTVS 379 (415)
T ss_dssp TEEEE
T ss_pred CceEE
Confidence 98864
No 115
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-30 Score=285.06 Aligned_cols=196 Identities=13% Similarity=0.113 Sum_probs=141.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC-c-eEEEeecccCCCCCcchhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD-H-IDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g-~-i~i~~~~~~~~~~~~~~~~~~ 164 (629)
+++++||++.|+ ++||++++|++++|+||||||||||+|+|+|+..|+.| . +.+.+... ..+..+
T Consensus 118 mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~-------~~i~~v 184 (460)
T 2npi_A 118 MKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQ-------QPIFTV 184 (460)
T ss_dssp HHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTT-------SCSSSC
T ss_pred hhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCcc-------CCeeee
Confidence 588889999885 79999999999999999999999999999999999999 8 87764110 000001
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
.+... +.......+..++. +..... .. .....++..+++.+|+.. ..+ +.+|||||||||+||
T Consensus 185 pq~~~-----------l~~~~~~~tv~eni-~~~~~~-~~-~~~~~~~~~ll~~~gl~~-~~~--~~~LSgGq~qrlalA 247 (460)
T 2npi_A 185 PGCIS-----------ATPISDILDAQLPT-WGQSLT-SG-ATLLHNKQPMVKNFGLER-INE--NKDLYLECISQLGQV 247 (460)
T ss_dssp SSCCE-----------EEECCSCCCTTCTT-CSCBCB-SS-CCSSCCBCCEECCCCSSS-GGG--CHHHHHHHHHHHHHH
T ss_pred ccchh-----------hcccccccchhhhh-cccccc-cC-cchHHHHHHHHHHhCCCc-ccc--hhhhhHHHHHHHHHH
Confidence 00000 00000000000000 000000 00 001123456788899964 344 789999999999999
Q ss_pred HH--HccCCCE----EEEeC-CCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH------HHHhhcce-----eEEEc-CC
Q psy10512 245 RA--LYVKPHL----LLLDE-PTNHLDLDACVWLEEELKTYKRILVIISHSQD------FLNGVCTN-----IIHLD-KR 305 (629)
Q Consensus 245 ra--L~~~P~i----LLLDE-PT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~------~l~~~~d~-----ii~l~-~G 305 (629)
|| |+.+|++ ||||| ||++||+. ...|.+++++++.|+|+||||.+ ++..+||+ |++|+ +|
T Consensus 248 ra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G 326 (460)
T 2npi_A 248 VGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLD 326 (460)
T ss_dssp HHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCT
T ss_pred HHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCC
Confidence 99 9999999 99999 99999999 88888888888999999999988 88899999 99999 99
Q ss_pred eEEEEcCcHH
Q psy10512 306 KLKYYGGNYE 315 (629)
Q Consensus 306 ~i~~~~g~~~ 315 (629)
+++ . ++.+
T Consensus 327 ~iv-~-g~~~ 334 (460)
T 2npi_A 327 GVS-A-VDDV 334 (460)
T ss_dssp TCC-C-CCHH
T ss_pred cEE-E-CCHH
Confidence 998 4 4443
No 116
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=1e-25 Score=239.94 Aligned_cols=80 Identities=20% Similarity=0.342 Sum_probs=74.2
Q ss_pred cCcCcCChhHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcCE
Q psy10512 516 CPIRQLSDGQKCRVVFAYLAW------QAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAEE 586 (629)
Q Consensus 516 ~~~~~LSgGqkqrv~lAral~------~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d~ 586 (629)
+++.+|||||||||+||+||+ .+|++|||||||+|||+.++..+.+.|.++ +.|||+||||+++ ...||+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~ 353 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDR 353 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCE
Confidence 577899999999999999999 799999999999999999999999999876 4689999999998 567999
Q ss_pred EEEEeCCEEE
Q psy10512 587 IWICENGKVT 596 (629)
Q Consensus 587 i~~l~~G~i~ 596 (629)
+++|++|+++
T Consensus 354 ~~~l~~G~i~ 363 (365)
T 3qf7_A 354 KLRITGGVVV 363 (365)
T ss_dssp EEEEETTEEC
T ss_pred EEEEECCEEE
Confidence 9999999985
No 117
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=2e-25 Score=237.71 Aligned_cols=82 Identities=20% Similarity=0.351 Sum_probs=75.4
Q ss_pred hcccCCCChHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcc
Q psy10512 227 QKKTKDFSGGWRMRIALARALY------VKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCT 297 (629)
Q Consensus 227 ~~~~~~LSGGqrqRv~LAraL~------~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d 297 (629)
++++.+|||||||||+||+||+ .+|++|||||||++||+.++.++++.|.++ +.|||+||||+++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5788999999999999999999 799999999999999999999999988765 6899999999998 56899
Q ss_pred eeEEEcCCeEEE
Q psy10512 298 NIIHLDKRKLKY 309 (629)
Q Consensus 298 ~ii~l~~G~i~~ 309 (629)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999863
No 118
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.92 E-value=2.1e-26 Score=219.19 Aligned_cols=145 Identities=19% Similarity=0.100 Sum_probs=94.0
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhcc
Q psy10512 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVAC 184 (629)
Q Consensus 105 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (629)
||||+|++|++++|+||||||||||++++.+. ...+.. +..+ .+...
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~------~~~~~~-------------------d~~~--------g~~~~ 47 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP------TEVISS-------------------DFCR--------GLMSD 47 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG------GGEEEH-------------------HHHH--------HHHCS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC------CeEEcc-------------------HHHH--------HHhcC
Confidence 68999999999999999999999999986531 111110 0000 00000
Q ss_pred CChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy10512 185 EDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264 (629)
Q Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD 264 (629)
+..........+.. ....+ ......|... ..+ .....|||||||++|||||+.+|++|+|||||++||
T Consensus 48 -~~~~~~~~~~~~~~--------~~~~~-~~~~~~g~~~-~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld 115 (171)
T 4gp7_A 48 -DENDQTVTGAAFDV--------LHYIV-SKRLQLGKLT-VVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQ 115 (171)
T ss_dssp -STTCGGGHHHHHHH--------HHHHH-HHHHHTTCCE-EEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHH
T ss_pred -cccchhhHHHHHHH--------HHHHH-HHHHhCCCeE-EEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHH
Confidence 00000000000000 01111 1222345432 222 345679999999999999999999999999999999
Q ss_pred HH----------------HHHHHHHHHh---hcCCEEEEEecCHHHHHh
Q psy10512 265 LD----------------ACVWLEEELK---TYKRILVIISHSQDFLNG 294 (629)
Q Consensus 265 ~~----------------~~~~l~~~L~---~~~~tvIivsHd~~~l~~ 294 (629)
+. ....+.+.|+ +.|.|+|+||||++++..
T Consensus 116 ~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 116 ERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 99 5577777753 337899999999999975
No 119
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.92 E-value=4e-26 Score=217.22 Aligned_cols=146 Identities=12% Similarity=0.074 Sum_probs=96.5
Q ss_pred eeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHH
Q psy10512 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDRE 498 (629)
Q Consensus 419 ~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (629)
|+||+|++|++++|+||||||||||++++.+-. .........++++|..... ....... ....
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~------~~~~~d~~~g~~~~~~~~~-----~~~~~~~------~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT------EVISSDFCRGLMSDDENDQ-----TVTGAAF------DVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG------GEEEHHHHHHHHCSSTTCG-----GGHHHHH------HHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC------eEEccHHHHHHhcCcccch-----hhHHHHH------HHHH
Confidence 689999999999999999999999999865321 1111111112223221100 0000000 0001
Q ss_pred HHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH----------------HHHHHHHH
Q psy10512 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME----------------TIDALADA 562 (629)
Q Consensus 499 ~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~----------------~~~~l~~~ 562 (629)
.........|...... .....||||||||+|||+++.+|++|+|||||++||+. ....+.+.
T Consensus 64 ~~~~~~~~~g~~~~~~--~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~ 141 (171)
T 4gp7_A 64 YIVSKRLQLGKLTVVD--ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKS 141 (171)
T ss_dssp HHHHHHHHTTCCEEEE--SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEE--CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhh
Confidence 1112223345543322 23567999999999999999999999999999999999 55788887
Q ss_pred Hhhc---CceEEEEecCHHHHHhh
Q psy10512 563 INDF---EGGLVLVSHDFRLINQV 583 (629)
Q Consensus 563 l~~~---~~~vi~vsHd~~~~~~~ 583 (629)
|.++ +.|+|+||||++++..+
T Consensus 142 l~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 142 IKGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp STTHHHHTCSEEEEECSHHHHHHE
T ss_pred hhhHHhcCCcEEEEeCCHHHhhhh
Confidence 5443 67899999999999763
No 120
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=4.3e-27 Score=230.82 Aligned_cols=147 Identities=16% Similarity=0.158 Sum_probs=95.8
Q ss_pred eEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEEC--------CceeEEeeccchhccc-CCCCCHHH
Q psy10512 415 WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN--------SHLRFARYHQHLHELL-DLDISPLD 485 (629)
Q Consensus 415 ~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~--------~~~~~~~~~q~~~~~~-~~~~~~~~ 485 (629)
.+|+++ ++|++++|+||||||||||+++|+|+ +|++|+|... ....++|++|...+.+ ........
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~ 88 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHD 88 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHH
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHH
Confidence 378885 89999999999999999999999999 9999998431 1224677777642222 11000011
Q ss_pred HHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 486 YMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND 565 (629)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~ 565 (629)
.+. .....+.+.++++. |+ ||||||+|||||+.+|+||||||||++ ++..+.+.|.+
T Consensus 89 ~~~----~~~~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~ 145 (208)
T 3b85_A 89 ALR----DMVEPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTR 145 (208)
T ss_dssp HHT----TTSCTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTT
T ss_pred HHH----HhccHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHH
Confidence 111 00112345555554 33 999999999999999999999999999 88899999987
Q ss_pred c--CceEEEEecCHHHHHhhcCEEEEEeCCE
Q psy10512 566 F--EGGLVLVSHDFRLINQVAEEIWICENGK 594 (629)
Q Consensus 566 ~--~~~vi~vsHd~~~~~~~~d~i~~l~~G~ 594 (629)
+ +.+|| ||||++++.. +....+|.
T Consensus 146 l~~g~tii-vtHd~~~~~~----~~~~~~G~ 171 (208)
T 3b85_A 146 LGFGSKMV-VTGDITQVDL----PGGQKSGL 171 (208)
T ss_dssp BCTTCEEE-EEEC----------------CC
T ss_pred hcCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence 7 45788 9999987753 33445554
No 121
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.90 E-value=6.7e-27 Score=229.40 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=95.3
Q ss_pred EeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHH
Q psy10512 96 TFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLE 175 (629)
Q Consensus 96 ~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (629)
+|+++.+|+|+ ++|++++|+|||||||||||++|+|+ .|++|++......... ......+.++.+..
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~-~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPA-VEAGEKLGFLPGTL------- 75 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECS-CCTTCCCCSSCC---------
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCc-hhhhcceEEecCCH-------
Confidence 46667789986 89999999999999999999999999 9999998532111110 00011111111110
Q ss_pred HHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEE
Q psy10512 176 KLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLL 255 (629)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLL 255 (629)
.+.+..+ .. ..+..+.... ...++.++++. |+ ||||||+|||||+.+|+|||
T Consensus 76 --~enl~~~--~~------~~~~~~~~~~---~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lll 127 (208)
T 3b85_A 76 --NEKIDPY--LR------PLHDALRDMV---EPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVI 127 (208)
T ss_dssp ------CTT--TH------HHHHHHTTTS---CTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEE
T ss_pred --HHHHHHH--HH------HHHHHHHHhc---cHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEE
Confidence 0011000 00 0001111100 01234555554 32 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHh
Q psy10512 256 LDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNG 294 (629)
Q Consensus 256 LDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~ 294 (629)
|||||++ ++.++++.|+++ +.||| ||||++++..
T Consensus 128 LDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 128 LDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp ECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred EeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 9999999 888888888776 57888 9999987663
No 122
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.90 E-value=1.1e-24 Score=208.51 Aligned_cols=142 Identities=12% Similarity=0.109 Sum_probs=101.3
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCCC-ccEEEE-----CCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHH
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTPS-VGMVRK-----NSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRK 502 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~-----~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (629)
+++|+||||||||||+++|+|++... .|.... .....++|.+|... ..+.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~--------~~~~~--------------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE--------GKKKI--------------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT--------CCEEE---------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc--------HHHHH---------------
Confidence 68999999999999999999998522 222110 01123455554421 00010
Q ss_pred HHHHcCCCC-cccccCcCcCChhHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCceEEEEe
Q psy10512 503 IIGRYGLTG-RQQVCPIRQLSDGQKCRVVFAYL-----AWQAPHLLLLDE--PTNHLDMETIDALADAINDFEGGLVLVS 574 (629)
Q Consensus 503 ~l~~~gl~~-~~~~~~~~~LSgGqkqrv~lAra-----l~~~p~lLlLDE--PT~~LD~~~~~~l~~~l~~~~~~vi~vs 574 (629)
+..+++.. ....+++.+||||||||++||+| ++.+|++||||| ||++||+...+.+.+.+.+.+.++|++|
T Consensus 59 -~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~ 137 (178)
T 1ye8_A 59 -FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATI 137 (178)
T ss_dssp -EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEEC
T ss_pred -HHhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEE
Confidence 01111111 12345678999999999999996 999999999999 9999999999999999988767788888
Q ss_pred ---cCHHHHHhhcCEEEEEeCCEEEEe
Q psy10512 575 ---HDFRLINQVAEEIWICENGKVTKW 598 (629)
Q Consensus 575 ---Hd~~~~~~~~d~i~~l~~G~i~~~ 598 (629)
||.+++..+|++ .+|++..+
T Consensus 138 H~~h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 138 PIRDVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp CSSCCSHHHHHHHTC----TTCEEEEC
T ss_pred ccCCCchHHHHHHhc----CCcEEEEe
Confidence 599999999997 45666543
No 123
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=2e-23 Score=218.82 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=74.4
Q ss_pred ccCcCcCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEE-
Q psy10512 515 VCPIRQLSDGQKCRVVFAYLAW----QAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEI- 587 (629)
Q Consensus 515 ~~~~~~LSgGqkqrv~lAral~----~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i- 587 (629)
+.++.+|||||||||+||++|+ .+|++|||||||++||+..+..+.+.|.++ +.+||+|||+.+ +..+||++
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~ 292 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLH 292 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEE
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEE
Confidence 3467899999999999999997 688999999999999999999999999887 458999999965 45789987
Q ss_pred -EEEeCCEEEEecCCHHH
Q psy10512 588 -WICENGKVTKWEGNILD 604 (629)
Q Consensus 588 -~~l~~G~i~~~~g~~~~ 604 (629)
++|.+|.......+.++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 88888876555555444
No 124
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=1.8e-23 Score=219.06 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=75.0
Q ss_pred hhcccCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhccee
Q psy10512 226 QQKKTKDFSGGWRMRIALARALY----VKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNI 299 (629)
Q Consensus 226 ~~~~~~~LSGGqrqRv~LAraL~----~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~i 299 (629)
.++++.+|||||||||+||+||+ .+|+||||||||++||+..+.++.+.|+++ +.|||+|||+.+ +..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 46678999999999999999997 689999999999999999999999999876 579999999965 56689987
Q ss_pred --EEEcCCeEEEEcCc
Q psy10512 300 --IHLDKRKLKYYGGN 313 (629)
Q Consensus 300 --i~l~~G~i~~~~g~ 313 (629)
++|.+|........
T Consensus 292 ~~v~~~~g~s~~~~~~ 307 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVE 307 (322)
T ss_dssp EEEEESSSCEEEEECC
T ss_pred EEEEEeCCEEEEEEEE
Confidence 88898866554333
No 125
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.88 E-value=6.9e-24 Score=203.02 Aligned_cols=81 Identities=6% Similarity=-0.025 Sum_probs=71.8
Q ss_pred hhhcccCCCChHHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCCEEEEEe---cCHHHHHh
Q psy10512 225 MQQKKTKDFSGGWRMRIALARA-----LYVKPHLLLLDE--PTNHLDLDACVWLEEELKTYKRILVIIS---HSQDFLNG 294 (629)
Q Consensus 225 ~~~~~~~~LSGGqrqRv~LAra-----L~~~P~iLLLDE--PT~~LD~~~~~~l~~~L~~~~~tvIivs---Hd~~~l~~ 294 (629)
..++++.+||||||||++||+| |+.+|++||||| ||++||+....++.+.|.+.+.|+|++| ||++++..
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHH
T ss_pred cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHH
Confidence 4567889999999999999996 999999999999 9999999999999999988778788888 59999999
Q ss_pred hcceeEEEcCCeEEE
Q psy10512 295 VCTNIIHLDKRKLKY 309 (629)
Q Consensus 295 ~~d~ii~l~~G~i~~ 309 (629)
+|++ .+|+++.
T Consensus 149 i~~r----~~~~i~~ 159 (178)
T 1ye8_A 149 IRRL----PGAVLIE 159 (178)
T ss_dssp HHTC----TTCEEEE
T ss_pred HHhc----CCcEEEE
Confidence 9998 4455543
No 126
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.87 E-value=1.6e-25 Score=240.47 Aligned_cols=170 Identities=12% Similarity=0.013 Sum_probs=128.7
Q ss_pred eEeeeeeEEEeCCC--------------------EEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce--eEEeeccc
Q psy10512 415 WIYRNLEFGIDLDT--------------------RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL--RFARYHQH 472 (629)
Q Consensus 415 ~il~~vsl~i~~Ge--------------------~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~--~~~~~~q~ 472 (629)
.+++++||+|++|+ ++||+||||||||||+|+|+|+++|++|+|..++.. +.++++|+
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~ 116 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH 116 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc
Confidence 37999999999999 999999999999999999999999999999877632 12555554
Q ss_pred hhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChh--HHHHHHHHHHHcc----------CCC
Q psy10512 473 LHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDG--QKCRVVFAYLAWQ----------APH 540 (629)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG--qkqrv~lAral~~----------~p~ 540 (629)
. ....+++.++..... ....+.++++.+++.+.. ..+ . |||| |+||+.||++|+. +|+
T Consensus 117 ~---~~~~ltv~D~~g~~~----~~~~~~~~L~~~~L~~~~-~~~-~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpd 186 (413)
T 1tq4_A 117 P---NIPNVVFWDLPGIGS----TNFPPDTYLEKMKFYEYD-FFI-I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVD 186 (413)
T ss_dssp S---SCTTEEEEECCCGGG----SSCCHHHHHHHTTGGGCS-EEE-E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred c---ccCCeeehHhhcccc----hHHHHHHHHHHcCCCccC-CeE-E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 2 112233333221111 123467889999986542 223 3 9999 9999999999999 999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc--------C----ceEEEEecCHHH--HHhhcCEEE-EEeCCE
Q psy10512 541 LLLLDEPTNHLDMETIDALADAINDF--------E----GGLVLVSHDFRL--INQVAEEIW-ICENGK 594 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~~--------~----~~vi~vsHd~~~--~~~~~d~i~-~l~~G~ 594 (629)
+|+|||||+|||+.++..+++.|+++ + .+|+++||++.. +..+||+|. .+..|.
T Consensus 187 lllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 187 SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred ccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 99999999999999998888777654 1 347788999887 889999885 344443
No 127
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.86 E-value=5.8e-21 Score=201.83 Aligned_cols=83 Identities=17% Similarity=0.064 Sum_probs=75.3
Q ss_pred hcccC-CCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhc
Q psy10512 227 QKKTK-DFSGGWRMRIALARALY---------VKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVC 296 (629)
Q Consensus 227 ~~~~~-~LSGGqrqRv~LAraL~---------~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~ 296 (629)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..|.+.|.++..|+|++||+ +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 46777 89999999999999999 8999999999999999999999999999887899999995 43 89
Q ss_pred ceeEEEcCCeEEEEcCc
Q psy10512 297 TNIIHLDKRKLKYYGGN 313 (629)
Q Consensus 297 d~ii~l~~G~i~~~~g~ 313 (629)
|++++|++|+++..+.+
T Consensus 335 ~~i~~l~~G~i~~~g~~ 351 (359)
T 2o5v_A 335 ALTLRAQAGRFTPVADE 351 (359)
T ss_dssp SEEEEEETTEEEECCCT
T ss_pred CEEEEEECCEEEecCCH
Confidence 99999999999876544
No 128
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.85 E-value=4.3e-21 Score=202.47 Aligned_cols=77 Identities=29% Similarity=0.449 Sum_probs=68.5
Q ss_pred hhcccCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhc
Q psy10512 226 QQKKTKDFSGGWRM------RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVC 296 (629)
Q Consensus 226 ~~~~~~~LSGGqrq------Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~ 296 (629)
.++++.+||||||| |+++|++|+.+|++|||||||+|||+..+..+.++|.++ +.|||+||||.+ +..+|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~ 320 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 320 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhC
Confidence 46788999999999 678888889999999999999999999999999988765 469999999976 56789
Q ss_pred ceeEEEc
Q psy10512 297 TNIIHLD 303 (629)
Q Consensus 297 d~ii~l~ 303 (629)
|++++|+
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999885
No 129
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.85 E-value=7.3e-24 Score=227.51 Aligned_cols=172 Identities=14% Similarity=0.114 Sum_probs=122.7
Q ss_pred eeeeEeeeEEEeCCC--------------------EEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcc
Q psy10512 100 CELLQDTMLELNCGR--------------------RYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKS 159 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge--------------------~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~ 159 (629)
..+|++|||+|++|+ ++||+||||||||||+|+|+|+..|+.|++.+.+... ...
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~--t~~--- 110 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV--TME--- 110 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC------CC---
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeec--cee---
Confidence 468999999999999 9999999999999999999999999999887643211 000
Q ss_pred hhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChH--H
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGG--W 237 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG--q 237 (629)
..+.+.. .. +.. .+++.+ .+. ....++.++|+.+++.. . +..+. |||| |
T Consensus 111 --~~v~q~~--------------~~-~~l------tv~D~~-g~~--~~~~~~~~~L~~~~L~~-~-~~~~~-lS~G~~~ 161 (413)
T 1tq4_A 111 --RHPYKHP--------------NI-PNV------VFWDLP-GIG--STNFPPDTYLEKMKFYE-Y-DFFII-ISATRFK 161 (413)
T ss_dssp --CEEEECS--------------SC-TTE------EEEECC-CGG--GSSCCHHHHHHHTTGGG-C-SEEEE-EESSCCC
T ss_pred --EEecccc--------------cc-CCe------eehHhh-ccc--chHHHHHHHHHHcCCCc-c-CCeEE-eCCCCcc
Confidence 0000000 00 000 000000 000 01234678899999853 2 33344 9999 9
Q ss_pred HHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc------------CCEEEEEecCHHH--HH
Q psy10512 238 RMRIALARALYV----------KPHLLLLDEPTNHLDLDACVWLEEELKTY------------KRILVIISHSQDF--LN 293 (629)
Q Consensus 238 rqRv~LAraL~~----------~P~iLLLDEPT~~LD~~~~~~l~~~L~~~------------~~tvIivsHd~~~--l~ 293 (629)
+||++||+||+. +|++|||||||++||+.++..+++.|+++ ..+|+++||+++. +.
T Consensus 162 kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e 241 (413)
T 1tq4_A 162 KNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFP 241 (413)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHH
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHH
Confidence 999999999999 99999999999999999988887766543 2468888999987 99
Q ss_pred hhcceeE-EEcCC
Q psy10512 294 GVCTNII-HLDKR 305 (629)
Q Consensus 294 ~~~d~ii-~l~~G 305 (629)
.+||+|. .|..|
T Consensus 242 ~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 242 VLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHHSCGG
T ss_pred HHHHHHHHhCccc
Confidence 9999996 55544
No 130
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.84 E-value=3.4e-25 Score=228.56 Aligned_cols=163 Identities=21% Similarity=0.178 Sum_probs=120.4
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccC
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLD 478 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 478 (629)
.|+++||+|.|+ . .+|+++||+|++|++++|+||||||||||+++|+|++ +|+|. .+++|.... +.
T Consensus 101 ~i~~~~vs~~y~--~-~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~-------~~v~q~~~l-f~ 166 (305)
T 2v9p_A 101 FFNYQNIELITF--I-NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL-------SFANHKSHF-WL 166 (305)
T ss_dssp HHHHTTCCHHHH--H-HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE-------CGGGTTSGG-GG
T ss_pred eEEEEEEEEEcC--h-hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE-------EEecCcccc-cc
Confidence 488999999996 2 4899999999999999999999999999999999999 89984 344444221 11
Q ss_pred CCCCHHH-HHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q psy10512 479 LDISPLD-YMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETID 557 (629)
Q Consensus 479 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~ 557 (629)
.++.+ ++... +. . ...+.+.++.+ +.... + ...|||||||| ||||+.+|+||| |++||+.+..
T Consensus 167 --~ti~~~ni~~~-~~-~-~~~~~~~i~~~-L~~gl-d--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~ 230 (305)
T 2v9p_A 167 --ASLADTRAALV-DD-A-THACWRYFDTY-LRNAL-D--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAED 230 (305)
T ss_dssp --GGGTTCSCEEE-EE-E-CHHHHHHHHHT-TTGGG-G--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCG
T ss_pred --ccHHHHhhccC-cc-c-cHHHHHHHHHH-hHccC-C--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHH
Confidence 12222 22111 11 1 12455666664 43322 2 57899999999 999999999999 9999999888
Q ss_pred HHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHH
Q psy10512 558 ALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605 (629)
Q Consensus 558 ~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 605 (629)
.+.. +||++..+ .+||+| +|++|+|+ ..|+.+++
T Consensus 231 ~i~~-----------ltH~~~~~-~~aD~i-vl~~G~iv-~~g~~~el 264 (305)
T 2v9p_A 231 RYLY-----------LHSRVQTF-RFEQPC-TDESGEQP-FNITDADW 264 (305)
T ss_dssp GGGG-----------GTTTEEEE-ECCCCC-CCC---CC-CCCCHHHH
T ss_pred HHHH-----------HhCCHHHH-HhCCEE-EEeCCEEE-EeCCHHHH
Confidence 7752 29998876 579999 99999997 57998887
No 131
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.84 E-value=4.7e-21 Score=202.15 Aligned_cols=80 Identities=30% Similarity=0.427 Sum_probs=69.1
Q ss_pred ccCcCcCChhHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcC
Q psy10512 515 VCPIRQLSDGQKC------RVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAE 585 (629)
Q Consensus 515 ~~~~~~LSgGqkq------rv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d 585 (629)
.+++.+||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|.++ +.+||+||||.+ +..+||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCC
Confidence 3577899999999 678888889999999999999999999999999999876 348999999966 567899
Q ss_pred EEEEEe--CCEE
Q psy10512 586 EIWICE--NGKV 595 (629)
Q Consensus 586 ~i~~l~--~G~i 595 (629)
++++|+ +|..
T Consensus 322 ~~~~l~~~~g~s 333 (339)
T 3qkt_A 322 HVIRISLENGSS 333 (339)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEecCCcc
Confidence 999986 5543
No 132
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.83 E-value=1e-22 Score=199.68 Aligned_cols=178 Identities=13% Similarity=0.048 Sum_probs=99.8
Q ss_pred eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHH
Q psy10512 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAE 179 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (629)
.++++| .+|++|++++|+||||||||||+++|+|+++...+.+.+. ...........+.++.+.... +...
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~--~~~~~~~~~~~i~~~~q~~~~---~~~~-- 79 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSAT--TRAPRPGEVDGVDYHFIDPTR---FQQL-- 79 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEE--SSCCCTTCCBTTTBEECCHHH---HHHH--
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEccccc--ccCCcccccCCCeeEecCHHH---HHHH--
Confidence 346777 7999999999999999999999999999874222111111 000000001111111111111 1000
Q ss_pred HHhccCChhHHHHHHHHHh--hhhccChhhHHHHHHHH------HHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCC
Q psy10512 180 QLVACEDDESQEQLMDIYD--RLDDISADTAEARAANI------LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP 251 (629)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~------L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 251 (629)
....... ....++. .+.........+++.+. ++.+|+. ...++++..|| +|+.+|
T Consensus 80 --~~~~~l~---~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~lS-----------~l~~~p 142 (207)
T 1znw_A 80 --IDQGELL---EWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMPEAVT-----------VFLAPP 142 (207)
T ss_dssp --HHTTCEE---EEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCTTSEE-----------EEEECS
T ss_pred --HhcCCce---eehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcCCcEE-----------EEEECC
Confidence 0000000 0000000 11112222334445554 5555663 55677888888 999999
Q ss_pred CEEEEeCCCCCC----CHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeEEEc
Q psy10512 252 HLLLLDEPTNHL----DLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNIIHLD 303 (629)
Q Consensus 252 ~iLLLDEPT~~L----D~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii~l~ 303 (629)
++++|||||++| |+..+..+.+.++++ +.|+|+||||++++..+||+|++|.
T Consensus 143 ~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 143 SWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999999998 777888888776543 6799999999999999999999984
No 133
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.83 E-value=1.8e-22 Score=209.13 Aligned_cols=166 Identities=16% Similarity=0.130 Sum_probs=119.9
Q ss_pred eeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------------eEEeeccchhcccCCC
Q psy10512 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------------RFARYHQHLHELLDLD 480 (629)
Q Consensus 418 ~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------------~~~~~~q~~~~~~~~~ 480 (629)
.++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.. .+++++|... .....
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~~ 169 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAA 169 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCHH
Confidence 45788899999999999999999999999999999999999886521 2455555431 01222
Q ss_pred CCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHH
Q psy10512 481 ISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH--LLLLDEPTNHLDMETIDA 558 (629)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPT~~LD~~~~~~ 558 (629)
.++.+++........+ ..+++.+|+.+.. ..++.+|| +||++|||+++.+|+ +|+|| ||+|||+....
T Consensus 170 ~~v~e~l~~~~~~~~d----~~lldt~gl~~~~-~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~- 239 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD----VVLCDTSGRLHTN-YSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA- 239 (302)
T ss_dssp HHHHHHHHHHHHTTCS----EEEECCCCCSSCC-HHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH-
T ss_pred HHHHHHHHHHHHcCCc----chHHhcCCCCcch-hHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH-
Confidence 2333433211000000 1245667776543 34678999 999999999999999 99999 99999987652
Q ss_pred HHHHHhhcCceEEEEec---------CHHHHHhhcCEEEEEeCCEE
Q psy10512 559 LADAINDFEGGLVLVSH---------DFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 559 l~~~l~~~~~~vi~vsH---------d~~~~~~~~d~i~~l~~G~i 595 (629)
...-...+.++|++|| .++.+..++..|.++..|+.
T Consensus 240 -~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 240 -REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp -HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 2333346789999999 67788888899999999964
No 134
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.83 E-value=7.7e-25 Score=225.93 Aligned_cols=162 Identities=14% Similarity=0.051 Sum_probs=112.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
.|+++||+|.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|.|..+ ..+.......+
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~-v~q~~~lf~~t------- 168 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSF-ANHKSHFWLAS------- 168 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECG-GGTTSGGGGGG-------
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEE-ecCcccccccc-------
Confidence 488999999998 77999999999999999999999999999999999987 6777431 11110000000
Q ss_pred chHHHHHHHHHHH-HHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAE-QLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 167 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
+.. .+... .... ..+.+.++.+ ++. ..+ +..|||||||| ||
T Consensus 169 ----------i~~~ni~~~----------------~~~~-----~~~~~~i~~~-L~~-gld--g~~LSgGqkQR---AR 210 (305)
T 2v9p_A 169 ----------LADTRAALV----------------DDAT-----HACWRYFDTY-LRN-ALD--GYPVSIDRKHK---AA 210 (305)
T ss_dssp ----------GTTCSCEEE----------------EEEC-----HHHHHHHHHT-TTG-GGG--TCCEECCCSSC---CC
T ss_pred ----------HHHHhhccC----------------cccc-----HHHHHHHHHH-hHc-cCC--ccCcCHHHHHH---HH
Confidence 000 00000 0000 1233444443 332 223 78999999999 99
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEEEcCcHHH
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~g~~~~ 316 (629)
||+.+|+||| |++||+.+...+.. +||++..+ .+||+| +|++|++++. |+.+.
T Consensus 211 All~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~iv~~-g~~~e 263 (305)
T 2v9p_A 211 VQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQPFN-ITDAD 263 (305)
T ss_dssp CEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---CCCC-CCHHH
T ss_pred HHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEEEEe-CCHHH
Confidence 9999999999 99999998877752 28998875 589999 9999999865 45443
No 135
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.82 E-value=1.6e-20 Score=198.46 Aligned_cols=84 Identities=21% Similarity=0.106 Sum_probs=75.2
Q ss_pred cCcC-cCChhHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcC
Q psy10512 516 CPIR-QLSDGQKCRVVFAYLAW---------QAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAE 585 (629)
Q Consensus 516 ~~~~-~LSgGqkqrv~lAral~---------~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d 585 (629)
+++. .|||||||||+||++|+ .+|+||||||||++||+..+..|.+.|.++..++|++||+ +. .||
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~~ 335 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GAA 335 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TCS
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cCC
Confidence 4666 79999999999999999 8999999999999999999999999999988889999995 33 899
Q ss_pred EEEEEeCCEEEEecCCHHH
Q psy10512 586 EIWICENGKVTKWEGNILD 604 (629)
Q Consensus 586 ~i~~l~~G~i~~~~g~~~~ 604 (629)
++++|++|+|+ ..|++++
T Consensus 336 ~i~~l~~G~i~-~~g~~~~ 353 (359)
T 2o5v_A 336 LTLRAQAGRFT-PVADEEM 353 (359)
T ss_dssp EEEEEETTEEE-ECCCTTT
T ss_pred EEEEEECCEEE-ecCCHHH
Confidence 99999999997 4676654
No 136
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.82 E-value=2.1e-22 Score=211.33 Aligned_cols=134 Identities=14% Similarity=0.116 Sum_probs=100.2
Q ss_pred eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHH
Q psy10512 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQ 180 (629)
Q Consensus 101 ~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (629)
++++++||.+++|++++|+||||||||||+++|+|++.|+.|.+.+.+.. ++...
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~-e~~~~------------------------ 213 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE-EIVFK------------------------ 213 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC-CCCCS------------------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee-ccccc------------------------
Confidence 37899999999999999999999999999999999999999988875321 00000
Q ss_pred HhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q psy10512 181 LVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260 (629)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT 260 (629)
.. ... +++ +.. |||+||++|||||..+|++|||||||
T Consensus 214 -----~~---------~~~-------------------i~~--------~~g--gg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 214 -----HH---------KNY-------------------TQL--------FFG--GNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp -----SC---------SSE-------------------EEE--------ECB--TTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred -----cc---------hhE-------------------EEE--------EeC--CChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 00 000 000 000 89999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCCeE
Q psy10512 261 NHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKL 307 (629)
Q Consensus 261 ~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i 307 (629)
+. +... ++..+..-+.|+|+++|+.+ +...|||+++|.+|..
T Consensus 251 ~~---e~~~-~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 251 SS---EAYD-FYNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp ST---HHHH-HHHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred hH---HHHH-HHHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 82 2222 33333332347999999999 6778999999998853
No 137
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.81 E-value=4.2e-23 Score=202.40 Aligned_cols=161 Identities=11% Similarity=0.002 Sum_probs=98.3
Q ss_pred eEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC-------ceeEEeeccchhcccCCCCCHHHHH
Q psy10512 415 WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS-------HLRFARYHQHLHELLDLDISPLDYM 487 (629)
Q Consensus 415 ~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------~~~~~~~~q~~~~~~~~~~~~~~~~ 487 (629)
+++.| .+|++|++++|+||||||||||+++|+|++++..+.+.... ...++|++|..... ..+++.+++
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~--~~~~~~~~l 85 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRF--QQLIDQGEL 85 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHH--HHHHHTTCE
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHH--HHHHhcCCc
Confidence 36777 78999999999999999999999999999963322211100 12356666654211 111111111
Q ss_pred h---------h--cCCChhhHHHHHHH------HHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy10512 488 L---------Q--SFPEVKDREEMRKI------IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550 (629)
Q Consensus 488 ~---------~--~~~~~~~~~~~~~~------l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~ 550 (629)
. . +.+.....+.+.+. ++.+|+... ...++..|| +|+.+|++++|||||++
T Consensus 86 ~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~lS-----------~l~~~p~~~~LDep~~~ 153 (207)
T 1znw_A 86 LEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAI-KKTMPEAVT-----------VFLAPPSWQDLQARLIG 153 (207)
T ss_dssp EEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHH-HHHCTTSEE-----------EEEECSCHHHHHHHHHT
T ss_pred eeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHH-HHhcCCcEE-----------EEEECCCHHHHHHHHHh
Confidence 0 0 11111112223333 444455322 233456777 89999999999999999
Q ss_pred C----CHHHHHHHHHHHhhc----CceEEEEecCHHHHHhhcCEEEEEe
Q psy10512 551 L----DMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEIWICE 591 (629)
Q Consensus 551 L----D~~~~~~l~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~ 591 (629)
| |+..+..+.+++.++ +.++|+||||++++..+||+|++|.
T Consensus 154 l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 154 RGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 8 777888888887654 4589999999999999999999984
No 138
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.81 E-value=2e-19 Score=200.21 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=70.4
Q ss_pred cCcCcC-ChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEEE
Q psy10512 516 CPIRQL-SDGQKCRVVFAYLAWQAP--HLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWIC 590 (629)
Q Consensus 516 ~~~~~L-SgGqkqrv~lAral~~~p--~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~l 590 (629)
+++..| ||||+|||+||++|+.+| ++|||||||+|||+.+...+.+.|.++ +.+||+||||++++. +||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 467888 999999999999999999 999999999999999999999998876 568999999999885 69999999
Q ss_pred eCC
Q psy10512 591 ENG 593 (629)
Q Consensus 591 ~~G 593 (629)
+++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
No 139
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.81 E-value=2.9e-23 Score=215.96 Aligned_cols=175 Identities=15% Similarity=0.066 Sum_probs=127.6
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEE-----------------------EeCCCEEEEECCCCCchHHHHHHHHcCCCCCc
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFG-----------------------IDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~-----------------------i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~ 455 (629)
.|++++|++.|. +++++++|. +.+|+++||+||||||||||+++|+|+++|+.
T Consensus 43 ~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 43 QIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp CCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred eEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 588999999994 256776664 88999999999999999999999999999987
Q ss_pred cEEEECCceeEEeeccchhcccCCCCCHHHHHhh----cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHH
Q psy10512 456 GMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQ----SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVF 531 (629)
Q Consensus 456 G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~l 531 (629)
|. ..+++++|+.. +... ++.+++.. +.+...+.+.+.++|+.++ .+.. ..++..|||||+|||++
T Consensus 119 G~------~~v~~v~qd~~--~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~~-~~~~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 119 HH------PRVDLVTTDGF--LYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGSD-YACAPVYSHLHYDIIPG 187 (312)
T ss_dssp TC------CCEEEEEGGGG--BCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTCS-CEEEEEEETTTTEEEEE
T ss_pred CC------CeEEEEecCcc--CCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCcc-cCCcccCChhhhhhhhh
Confidence 64 35778888643 2222 55554421 1222234567788888888 4433 24567999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHH-HhhcCEEEEEeCC
Q psy10512 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLI-NQVAEEIWICENG 593 (629)
Q Consensus 532 Aral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~-~~~~d~i~~l~~G 593 (629)
|++++.+|+|||||||+..+|+.. ..+.++-..+|+|+||.+.. ..+++|...+.++
T Consensus 188 a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 188 AEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred HHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998522 12333334578889988765 3445565555444
No 140
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.81 E-value=1.6e-21 Score=204.54 Aligned_cols=133 Identities=12% Similarity=0.133 Sum_probs=100.8
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChh
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 495 (629)
+++++||.|++|++++|+||||||||||+++|+|+++|++|.|.+++...+. .. . ...
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~---------~~-~----------~~~-- 217 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV---------FK-H----------HKN-- 217 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC---------CS-S----------CSS--
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc---------cc-c----------chh--
Confidence 6899999999999999999999999999999999999999999987642110 00 0 000
Q ss_pred hHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEec
Q psy10512 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSH 575 (629)
Q Consensus 496 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsH 575 (629)
.+++ +.. |||+||++||+||..+|++|||||||+. +..+ +++.+..-+.|+|++||
T Consensus 218 ----------~i~~--------~~g--gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~-~l~~~~~g~~tvi~t~H 273 (330)
T 2pt7_A 218 ----------YTQL--------FFG--GNITSADCLKSCLRMRPDRIILGELRSS---EAYD-FYNVLCSGHKGTLTTLH 273 (330)
T ss_dssp ----------EEEE--------ECB--TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHH-HHHHHHTTCCCEEEEEE
T ss_pred ----------EEEE--------EeC--CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHH-HHHHHhcCCCEEEEEEc
Confidence 0000 000 8999999999999999999999999982 2222 23333322347999999
Q ss_pred CHHHHHhhcCEEEEEeCCEE
Q psy10512 576 DFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 576 d~~~~~~~~d~i~~l~~G~i 595 (629)
+.+ +...|||+++|.+|..
T Consensus 274 ~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 274 AGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp CSS-HHHHHHHHHHHHHTSG
T ss_pred ccH-HHHHhhhheehhcCCc
Confidence 999 6678999999988853
No 141
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.81 E-value=3.2e-23 Score=204.99 Aligned_cols=141 Identities=15% Similarity=0.147 Sum_probs=88.3
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc------------eeEEeeccchhcccCC--CC
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------------LRFARYHQHLHELLDL--DI 481 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~~~~~~q~~~~~~~~--~~ 481 (629)
-|+||||+|++|++++|+||||||||||+++|+|++ | |.|.+ +. ..++|++|........ ..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 589999999999999999999999999999999999 6 98987 31 1244555543211000 00
Q ss_pred CHHHH--HhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHH-----HHHHccCCCEEEEeCCCCCCCHH
Q psy10512 482 SPLDY--MLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVF-----AYLAWQAPHLLLLDEPTNHLDME 554 (629)
Q Consensus 482 ~~~~~--~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~l-----Aral~~~p~lLlLDEPT~~LD~~ 554 (629)
...++ +...... .....+.++++...+. ... ..|||||+||++| +++++..|++++|||||+++|.+
T Consensus 88 ~~l~~~~~~~~~~g-~~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~ 161 (218)
T 1z6g_A 88 DFLEYDNYANNFYG-TLKSEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTE 161 (218)
T ss_dssp CEEEEEEETTEEEE-EEHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCC
T ss_pred chhhhhhcccccCC-CcHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCC
Confidence 00000 0000001 1234566777654431 111 4799999999999 89999999999999999999998
Q ss_pred HHHHHHHHHhhc
Q psy10512 555 TIDALADAINDF 566 (629)
Q Consensus 555 ~~~~l~~~l~~~ 566 (629)
+...+.+.|...
T Consensus 162 ~~~~i~~~l~~~ 173 (218)
T 1z6g_A 162 NQEQIQKRMEQL 173 (218)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 888887777543
No 142
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.80 E-value=1.5e-21 Score=202.09 Aligned_cols=190 Identities=12% Similarity=0.069 Sum_probs=120.2
Q ss_pred EeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHH
Q psy10512 96 TFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLE 175 (629)
Q Consensus 96 ~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (629)
.|+....+.++||++++|++++|+||||||||||+++|+|++.|..|.+.+.+.+ ... ..+ . .+ ...+.
T Consensus 83 ~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d--~~r--~~a---~---~q-l~~~~ 151 (302)
T 3b9q_A 83 MLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD--TFR--AAA---S---DQ-LEIWA 151 (302)
T ss_dssp HHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC--CSC--HHH---H---HH-HHHHH
T ss_pred HhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeec--ccc--hhH---H---HH-HHHHH
Confidence 3443333467899999999999999999999999999999999998988775321 110 000 0 00 00000
Q ss_pred HHHHHHhccCChhH-HHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCC--
Q psy10512 176 KLAEQLVACEDDES-QEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH-- 252 (629)
Q Consensus 176 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~-- 252 (629)
. ...+...+.... ......+++.+...... .....+++.+|+. +..++++.+|| +||++|||||+.+|+
T Consensus 152 ~-~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~---~~d~~lldt~gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~ 223 (302)
T 3b9q_A 152 E-RTGCEIVVAEGDKAKAATVLSKAVKRGKEE---GYDVVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEI 223 (302)
T ss_dssp H-HHTCEEECCC--CCCHHHHHHHHHHHHHHT---TCSEEEECCCCCS-SCCHHHHHHHH---HHHHHHHTTSTTCCSEE
T ss_pred H-hcCceEEEecCCccCHHHHHHHHHHHHHHc---CCcchHHhcCCCC-cchhHHHHHHH---HHHHHHHHhhccCCCee
Confidence 0 001111111100 00011111111000000 0001245677875 34567788999 999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEec---------CHHHHHhhcceeEEEcCCeE
Q psy10512 253 LLLLDEPTNHLDLDACVWLEEELKTYKRILVIISH---------SQDFLNGVCTNIIHLDKRKL 307 (629)
Q Consensus 253 iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsH---------d~~~l~~~~d~ii~l~~G~i 307 (629)
+|+|| ||++||+.... ..+-...+.|+|++|| .++.+..++..|.++..|+.
T Consensus 224 lLvLD-ptsglD~~~~~--~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 224 LLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EEEEe-CCCCcCHHHHH--HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99999 99999998653 3333356899999999 67778888889999999964
No 143
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.80 E-value=2.1e-21 Score=204.81 Aligned_cols=165 Identities=16% Similarity=0.138 Sum_probs=118.5
Q ss_pred eeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------------eEEeeccchhcccCCCC
Q psy10512 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------------RFARYHQHLHELLDLDI 481 (629)
Q Consensus 419 ~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------------~~~~~~q~~~~~~~~~~ 481 (629)
.+||++++|++++|+||||||||||+++|+|+++|+.|+|.+.+.. .+++++|.... .....
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~-~~p~~ 227 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK-AKAAT 227 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS-CCHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc-cChhh
Confidence 4678889999999999999999999999999999999999886521 24455543210 11122
Q ss_pred CHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHH
Q psy10512 482 SPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH--LLLLDEPTNHLDMETIDAL 559 (629)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPT~~LD~~~~~~l 559 (629)
++.+++........+ ..+++.+|+.+.. ..++.+|| +||++|||+++.+|+ +|||| ||+|||+.+..
T Consensus 228 tv~e~l~~~~~~~~d----~~lldt~Gl~~~~-~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~-- 296 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD----VVLCDTSGRLHTN-YSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-- 296 (359)
T ss_dssp HHHHHHHHHHHTTCS----EEEEECCCCSSCC-HHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--
T ss_pred hHHHHHHHHHhCCCH----HHHHHhcCCChhh-hhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--
Confidence 333333211000000 1245567776543 34678999 999999999999999 99999 99999988653
Q ss_pred HHHHhhcCceEEEEec---------CHHHHHhhcCEEEEEeCCEE
Q psy10512 560 ADAINDFEGGLVLVSH---------DFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 560 ~~~l~~~~~~vi~vsH---------d~~~~~~~~d~i~~l~~G~i 595 (629)
...-...+.++|++|| .+..+...+..|.++..|+.
T Consensus 297 ~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 297 REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 2333345789999999 57778788899999999864
No 144
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.80 E-value=2.5e-22 Score=198.59 Aligned_cols=180 Identities=12% Similarity=0.036 Sum_probs=101.3
Q ss_pred eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeeccc-CCCC--CcchhhhhhhchHHHHHHHH
Q psy10512 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTRE-MPAS--DKSALTCVMEVDEERVRLEK 176 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~ 176 (629)
..-|+||||+|++|++++|+||||||||||+++|+|++ | |.+.+ +.... .... ....+.++..... .+..
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~---~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKT---IFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHH---HHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHH---HHHH
Confidence 34699999999999999999999999999999999987 5 88876 32111 0000 0111111111111 0100
Q ss_pred HHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHH-----HHHHccCC
Q psy10512 177 LAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL-----ARALYVKP 251 (629)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~L-----AraL~~~P 251 (629)
...+....... .+.... ... ....+.++++...+. ..+ .+|||||+||++| |++|+.+|
T Consensus 83 ~~~~~~~l~~~-------~~~~~~--~g~--~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~ 146 (218)
T 1z6g_A 83 KLKNEDFLEYD-------NYANNF--YGT--LKSEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPP 146 (218)
T ss_dssp HHHTTCEEEEE-------EETTEE--EEE--EHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECS
T ss_pred hhhccchhhhh-------hccccc--CCC--cHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCc
Confidence 00000000000 000000 011 123456666654431 222 5799999999999 89999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc----------CCEEEEEecCHHHHHhhcceeEEE
Q psy10512 252 HLLLLDEPTNHLDLDACVWLEEELKTY----------KRILVIISHSQDFLNGVCTNIIHL 302 (629)
Q Consensus 252 ~iLLLDEPT~~LD~~~~~~l~~~L~~~----------~~tvIivsHd~~~l~~~~d~ii~l 302 (629)
++++|||||+++|.++...+.+.|... ..+.|+|+||++.+...+++++.-
T Consensus 147 ~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~~ 207 (218)
T 1z6g_A 147 STDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLLN 207 (218)
T ss_dssp CHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999988777666655432 356778888888887777777643
No 145
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.80 E-value=8.1e-20 Score=188.85 Aligned_cols=181 Identities=18% Similarity=0.150 Sum_probs=112.9
Q ss_pred eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC-ceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHH
Q psy10512 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD-HIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLA 178 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (629)
..+|+++++.|++|++++|+||||||||||++.|+|...|..| .+.+... +... .....++....
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~--e~~~------------~~~~~r~~~~~ 87 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML--EESV------------EETAEDLIGLH 87 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES--SSCH------------HHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC--cCCH------------HHHHHHHHHHH
Confidence 3579999999999999999999999999999999999888767 5544321 2110 00111111111
Q ss_pred HHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHH-HHHHHHHHHHccCCCEEEEe
Q psy10512 179 EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGW-RMRIALARALYVKPHLLLLD 257 (629)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq-rqRv~LAraL~~~P~iLLLD 257 (629)
. ..+......+ ... .+...+..+.+.++++..++. ....+..+|.++ +||+. |+++..+|++||||
T Consensus 88 ~----~~~~~~~~~l-~~~----~~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilD 154 (296)
T 1cr0_A 88 N----RVRLRQSDSL-KRE----IIENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILD 154 (296)
T ss_dssp T----TCCGGGCHHH-HHH----HHHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEE
T ss_pred c----CCChhhcccc-ccC----CCCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEc
Confidence 0 0010000000 000 011122334455555544442 123346789999 66666 99999999999999
Q ss_pred CCCC---C---CCH-HHHHHHHHHHh----hcCCEEEEEecCH--H--------------------HHHhhcceeEEEcC
Q psy10512 258 EPTN---H---LDL-DACVWLEEELK----TYKRILVIISHSQ--D--------------------FLNGVCTNIIHLDK 304 (629)
Q Consensus 258 EPT~---~---LD~-~~~~~l~~~L~----~~~~tvIivsHd~--~--------------------~l~~~~d~ii~l~~ 304 (629)
|||+ + +|. .....+.+.|+ +.+.|||++||+. + .+..+||+|++|++
T Consensus 155 ept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~ 234 (296)
T 1cr0_A 155 HISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (296)
T ss_dssp EEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEE
T ss_pred CccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec
Confidence 9999 4 455 55566666654 4588999999994 5 78889999999998
Q ss_pred CeE
Q psy10512 305 RKL 307 (629)
Q Consensus 305 G~i 307 (629)
|+.
T Consensus 235 ~~~ 237 (296)
T 1cr0_A 235 NQQ 237 (296)
T ss_dssp C--
T ss_pred Ccc
Confidence 864
No 146
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=6.8e-21 Score=212.52 Aligned_cols=168 Identities=12% Similarity=0.052 Sum_probs=117.6
Q ss_pred EEEEeEEEEeCCeeeeEee-eEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhh
Q psy10512 88 VKIANFSITFHGCELLQDT-MLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~v-sl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
++++++++.|++ |+.+ +..|.+|++++|+||||||||||+++|+|...|. |.-.++...++.
T Consensus 258 ~~~~~l~~g~~~---ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~------------- 320 (525)
T 1tf7_A 258 SSNVRVSSGVVR---LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEES------------- 320 (525)
T ss_dssp CCCCEECCSCHH---HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSC-------------
T ss_pred cccceeecChHH---HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCC-------------
Confidence 445555554432 2322 4589999999999999999999999999987764 542122211110
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
.. .+ .... ..+ .++ +.+ +..+|+. ...+.++.+|||||+||+++|++
T Consensus 321 --~~--~l---~~~~----------------~~~-g~~-------~~~-~~~~g~~-~~~~~~p~~LS~g~~q~~~~a~~ 367 (525)
T 1tf7_A 321 --RA--QL---LRNA----------------YSW-GMD-------FEE-MERQNLL-KIVCAYPESAGLEDHLQIIKSEI 367 (525)
T ss_dssp --HH--HH---HHHH----------------HTT-SCC-------HHH-HHHTTSE-EECCCCGGGSCHHHHHHHHHHHH
T ss_pred --HH--HH---HHHH----------------HHc-CCC-------HHH-HHhCCCE-EEEEeccccCCHHHHHHHHHHHH
Confidence 00 00 0000 000 111 011 2234543 34567789999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHH-----HHHHHHHHH---hhcCCEEEEEecCH----------HHHHhhcceeEEEcCCe
Q psy10512 247 LYVKPHLLLLDEPTNHLDLD-----ACVWLEEEL---KTYKRILVIISHSQ----------DFLNGVCTNIIHLDKRK 306 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~-----~~~~l~~~L---~~~~~tvIivsHd~----------~~l~~~~d~ii~l~~G~ 306 (629)
+..+|++|||| ||++||.. .+..+.+++ ++.+.|+|+|||+. .++..+||+|++|++|+
T Consensus 368 l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 368 NDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999999 99999998 777666544 55689999999999 88889999999999886
No 147
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.79 E-value=1.7e-21 Score=211.58 Aligned_cols=173 Identities=16% Similarity=0.163 Sum_probs=125.7
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce------------
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL------------ 464 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------------ 464 (629)
+++++++++++.|+.+. .+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|..
T Consensus 129 ~~~l~~~~v~~~~~tg~-~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTGV-RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CCTTTSCCCCSBCCCSC-HHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CCceEEeccceecCCCc-eEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 35789999999996333 489999 9999999999999999999999999999999999999887641
Q ss_pred -------eEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCc---ccccCcCcCChhHHHHHHHHHH
Q psy10512 465 -------RFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR---QQVCPIRQLSDGQKCRVVFAYL 534 (629)
Q Consensus 465 -------~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqrv~lAra 534 (629)
.+++++|. +.++...+.. .+.+....+.++-... .....+..||+|| |||+||
T Consensus 207 ~~~~l~r~i~~v~q~-------~~~~~~~~~v-------~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA-- 269 (438)
T 2dpy_A 207 GPDGRARSVVIAAPA-------DVSPLLRMQG-------AAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA-- 269 (438)
T ss_dssp HHHHHHTEEEEEECT-------TSCHHHHHHH-------HHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH--
T ss_pred cccccCceEEEEECC-------CCCHHHHHHH-------HHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH--
Confidence 13344432 1112111100 0001111111111100 0112356899999 999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC------c------eEEEEecCHHHHHhhcCEEEEEeCCEEEE
Q psy10512 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDFE------G------GLVLVSHDFRLINQVAEEIWICENGKVTK 597 (629)
Q Consensus 535 l~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~------~------~vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 597 (629)
+.+|++ |+|||+.....+.+++.++. + ||+++|||++ ..+||++++|.+|+|+.
T Consensus 270 -l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 270 -IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVL 335 (438)
T ss_dssp -TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEE
T ss_pred -hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEE
Confidence 888888 99999999999999997762 3 7899999998 67899999999999863
No 148
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.79 E-value=3.8e-20 Score=219.09 Aligned_cols=165 Identities=17% Similarity=0.245 Sum_probs=113.5
Q ss_pred CCeEEEEE-----EEEEEcCCCCeEeeeeeEEEeC-------CCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce
Q psy10512 397 PPVIMVQN-----VSFRYSDDGPWIYRNLEFGIDL-------DTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL 464 (629)
Q Consensus 397 ~~~l~~~~-----l~~~y~~~~~~il~~vsl~i~~-------Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~ 464 (629)
.++|++++ |++.|.++. .+++|++|++.+ |++++|+||||||||||||+| |++.+- .
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~-~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~---------a 816 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDD-FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM---------A 816 (1022)
T ss_dssp CCCEEEEEECCCC------CCC-CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------H
T ss_pred CceEEEEeccccEEEEEecCCc-eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------h
Confidence 45799999 999994333 489999999987 899999999999999999999 998752 1
Q ss_pred eEE-eeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 465 RFA-RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 465 ~~~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
.+| |++|... .+++.+.+. .++|+.+... ...+++|+++++ +++|++++.+|.|||
T Consensus 817 qiG~~Vpq~~~-----~l~v~d~I~----------------~rig~~d~~~-~~~stf~~em~~-~a~al~la~~~sLlL 873 (1022)
T 2o8b_B 817 QMGCYVPAEVC-----RLTPIDRVF----------------TRLGASDRIM-SGESTFFVELSE-TASILMHATAHSLVL 873 (1022)
T ss_dssp TTTCCEESSEE-----EECCCSBEE----------------EECC----------CHHHHHHHH-HHHHHHHCCTTCEEE
T ss_pred heeEEeccCcC-----CCCHHHHHH----------------HHcCCHHHHh-hchhhhHHHHHH-HHHHHHhCCCCcEEE
Confidence 234 6666432 112222221 1234433222 234678888775 999999999999999
Q ss_pred EeCCCCCCCHHHH-HHHHHHH---hhc-CceEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy10512 544 LDEPTNHLDMETI-DALADAI---NDF-EGGLVLVSHDFRLINQVAEEIWICENGKVT 596 (629)
Q Consensus 544 LDEPT~~LD~~~~-~~l~~~l---~~~-~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~ 596 (629)
|||||+|+|+... ..++..| .+. +.++|++|||.+++..+||+++++ +|++.
T Consensus 874 LDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 874 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 9999999998763 3344444 333 668999999999999999998876 46664
No 149
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.79 E-value=1.2e-21 Score=206.57 Aligned_cols=184 Identities=15% Similarity=0.255 Sum_probs=124.6
Q ss_pred CCeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcc
Q psy10512 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHEL 476 (629)
Q Consensus 397 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~ 476 (629)
+++++++++++.|+.+. .+++++ |.|.+|++++|+||||||||||+++|+|+..|+.|.|.+.|... ......
T Consensus 43 ~~~i~~~~l~~~~~tg~-~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~-----~ev~~~ 115 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGV-RAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERG-----REVNEF 115 (347)
T ss_dssp SCSTTCCCCCSEECCSC-HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH-----HHHHHH
T ss_pred CCCeeecccceecCCCC-EEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccH-----HHHHHH
Confidence 45789999999996333 489999 99999999999999999999999999999999999987765320 000000
Q ss_pred cCCCCCH--HHH--HhhcCCChhhHHHHHHHHHHcCCC------C-c--ccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 477 LDLDISP--LDY--MLQSFPEVKDREEMRKIIGRYGLT------G-R--QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 477 ~~~~~~~--~~~--~~~~~~~~~~~~~~~~~l~~~gl~------~-~--~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
... ... .+. +...........++...+..+++. + . .....+..||+|| |||++| +.+|++
T Consensus 116 i~~-~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~-- 188 (347)
T 2obl_A 116 LAL-LPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV-- 188 (347)
T ss_dssp HTT-SCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC--
T ss_pred HHh-hhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc--
Confidence 000 000 000 000000000111111111111111 0 0 0013567899999 899999 578877
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhcC----c------eEEEEecCHHHHHhhcCEEEEEeCCEEEEecCC
Q psy10512 544 LDEPTNHLDMETIDALADAINDFE----G------GLVLVSHDFRLINQVAEEIWICENGKVTKWEGN 601 (629)
Q Consensus 544 LDEPT~~LD~~~~~~l~~~l~~~~----~------~vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 601 (629)
|+|||+.....+.+++.+.+ + ||+++|||++ ..+||+++++.+|+|+. +++
T Consensus 189 ----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl-~~~ 249 (347)
T 2obl_A 189 ----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVL-TRE 249 (347)
T ss_dssp ----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEB-CHH
T ss_pred ----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEE-eCC
Confidence 99999999999999998762 2 6889999999 67899999999999973 443
No 150
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.79 E-value=1e-21 Score=207.11 Aligned_cols=189 Identities=13% Similarity=0.174 Sum_probs=121.2
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhh
Q psy10512 87 DVKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVM 165 (629)
Q Consensus 87 ~i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~ 165 (629)
.++++++++.|+ +..+|+++ |+|.+|+++||+||||||||||+++|+|+..|+.|.+.+.+. . ...+....
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~--~-----~~ev~~~i 116 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGE--R-----GREVNEFL 116 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC--C-----HHHHHHHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc--c-----HHHHHHHH
Confidence 588999999998 77899999 999999999999999999999999999999887665544321 1 00000000
Q ss_pred h-chHHHHHHHHHHHH-Hhc--cCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH
Q psy10512 166 E-VDEERVRLEKLAEQ-LVA--CEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241 (629)
Q Consensus 166 ~-~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv 241 (629)
. .... .... +.. ..+......+...+. ...+.+++...+-.-...-..+..||+|| |||
T Consensus 117 ~~~~~~------~~~~~v~~~~~~~~~~~~r~~~~~~----------~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v 179 (347)
T 2obl_A 117 ALLPQS------TLSKCVLVVTTSDRPALERMKAAFT----------ATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDV 179 (347)
T ss_dssp TTSCHH------HHTTEEEEEECTTSCHHHHHHHHHH----------HHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHH
T ss_pred Hhhhhh------hhhceEEEEECCCCCHHHHHHHHHH----------HHHHHHHHHhccccHHHHHhhHHHHHHHH-HHH
Confidence 0 0000 0000 000 000000000000000 00011111111100000014578899999 899
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-----CC-----EEEEEecCHHHHHhhcceeEEEcCCeEEEEc
Q psy10512 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY-----KR-----ILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311 (629)
Q Consensus 242 ~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~-----~~-----tvIivsHd~~~l~~~~d~ii~l~~G~i~~~~ 311 (629)
++| +.+|++ |+|||+.....+.+++.+. |. ||+++|||++ ..+||++++|.+|+|+..+
T Consensus 180 ~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~ 248 (347)
T 2obl_A 180 GLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTR 248 (347)
T ss_dssp HHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCH
T ss_pred HHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeC
Confidence 999 578877 9999999999999998765 33 7999999999 6789999999999998654
No 151
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.78 E-value=3.8e-19 Score=164.45 Aligned_cols=80 Identities=28% Similarity=0.421 Sum_probs=71.8
Q ss_pred hhcccCCCChHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhc
Q psy10512 226 QQKKTKDFSGGWRMRIALA------RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVC 296 (629)
Q Consensus 226 ~~~~~~~LSGGqrqRv~LA------raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~ 296 (629)
.++++.+||||||||++|| |||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 4678999999999999876 8999999999999999999999999999998775 579999999995 56799
Q ss_pred ceeEEE--cCCe
Q psy10512 297 TNIIHL--DKRK 306 (629)
Q Consensus 297 d~ii~l--~~G~ 306 (629)
|++++| .+|.
T Consensus 130 d~ii~l~~~~g~ 141 (148)
T 1f2t_B 130 DHVIRISLENGS 141 (148)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEcCCCe
Confidence 999999 4553
No 152
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.78 E-value=1.1e-19 Score=215.18 Aligned_cols=165 Identities=16% Similarity=0.083 Sum_probs=109.6
Q ss_pred eeEEEEe-----EEEEe-CCeeeeEeeeEEEeC-------CCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeeccc
Q psy10512 86 RDVKIAN-----FSITF-HGCELLQDTMLELNC-------GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTRE 152 (629)
Q Consensus 86 ~~i~i~n-----ls~~y-~~~~~L~~vsl~i~~-------Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~ 152 (629)
..|+++| |++.| ++..+++|++|++.+ |++++|+||||||||||||+| |++.+...-+. ++.++
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~--~Vpq~ 825 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGC--YVPAE 825 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTC--CEESS
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeE--EeccC
Confidence 3599999 99999 667899999999987 999999999999999999999 87543110000 00000
Q ss_pred CCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCC
Q psy10512 153 MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD 232 (629)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 232 (629)
. .. ..+.+. ++..+|+.+ ...+..++
T Consensus 826 ~-----~~---------------------------------l~v~d~---------------I~~rig~~d-~~~~~~st 851 (1022)
T 2o8b_B 826 V-----CR---------------------------------LTPIDR---------------VFTRLGASD-RIMSGEST 851 (1022)
T ss_dssp E-----EE---------------------------------ECCCSB---------------EEEECC----------CH
T ss_pred c-----CC---------------------------------CCHHHH---------------HHHHcCCHH-HHhhchhh
Confidence 0 00 000000 112334432 23344567
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH-HHHH---HHHhhc-CCEEEEEecCHHHHHhhcceeEEEcCCeE
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDAC-VWLE---EELKTY-KRILVIISHSQDFLNGVCTNIIHLDKRKL 307 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~-~~l~---~~L~~~-~~tvIivsHd~~~l~~~~d~ii~l~~G~i 307 (629)
+|+++++ +++|++++.+|++|||||||+|+|+... ..++ +.|.+. +.++|++||+.+++..+||+++++ +|++
T Consensus 852 f~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~ 929 (1022)
T 2o8b_B 852 FFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHM 929 (1022)
T ss_dssp HHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEE
T ss_pred hHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeE
Confidence 8887775 9999999999999999999999998763 3333 444443 789999999999999999999887 4777
Q ss_pred EE
Q psy10512 308 KY 309 (629)
Q Consensus 308 ~~ 309 (629)
..
T Consensus 930 ~~ 931 (1022)
T 2o8b_B 930 AC 931 (1022)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 153
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.78 E-value=2.4e-22 Score=209.12 Aligned_cols=180 Identities=11% Similarity=0.023 Sum_probs=118.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEE-----------------------EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCc
Q psy10512 87 DVKIANFSITFHGCELLQDTMLE-----------------------LNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~-----------------------i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~ 143 (629)
.|+++||++.|+ +++++++|. +++|+++||+||||||||||+++|+|++.|..|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 488899999994 677777764 8999999999999999999999999999887764
Q ss_pred eEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCc
Q psy10512 144 IDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK 223 (629)
Q Consensus 144 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~ 223 (629)
-.+..+.++..... . ...+++.. ... ...........+.++|+.++ .
T Consensus 121 ~~v~~v~qd~~~~~-----------~------t~~e~~~~-------------~~~-~g~~~~~d~~~~~~~L~~l~-~- 167 (312)
T 3aez_A 121 PRVDLVTTDGFLYP-----------N------AELQRRNL-------------MHR-KGFPESYNRRALMRFVTSVK-S- 167 (312)
T ss_dssp CCEEEEEGGGGBCC-----------H------HHHHHTTC-------------TTC-TTSGGGBCHHHHHHHHHHHH-T-
T ss_pred CeEEEEecCccCCc-----------c------cHHHHHHH-------------HHh-cCCChHHHHHHHHHHHHHhC-C-
Confidence 33333333211000 0 00001100 000 01111112345667777776 3
Q ss_pred hhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH-HhhcceeEEE
Q psy10512 224 EMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFL-NGVCTNIIHL 302 (629)
Q Consensus 224 ~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l-~~~~d~ii~l 302 (629)
...+.++.+|||||+||+++|+|++.+|+|||||||+..+|+.. ..+.++-..+|+|+|+.+.. ..+++|.+.+
T Consensus 168 ~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~ 242 (312)
T 3aez_A 168 GSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAM 242 (312)
T ss_dssp TCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHH
Confidence 23456788999999999999999999999999999999998521 12333323568888888653 4456666666
Q ss_pred cCCe
Q psy10512 303 DKRK 306 (629)
Q Consensus 303 ~~G~ 306 (629)
.++.
T Consensus 243 rd~~ 246 (312)
T 3aez_A 243 RTTA 246 (312)
T ss_dssp TTTG
T ss_pred Hhcc
Confidence 5543
No 154
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.77 E-value=1.6e-19 Score=211.23 Aligned_cols=155 Identities=17% Similarity=0.106 Sum_probs=107.4
Q ss_pred eEEEEeEEEEe-----CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHH--------hCCCCCCCCceEEEeecccC
Q psy10512 87 DVKIANFSITF-----HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL--------GNREVPVPDHIDIFHLTREM 153 (629)
Q Consensus 87 ~i~i~nls~~y-----~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L--------~g~~~p~~g~i~i~~~~~~~ 153 (629)
.|.+++...-+ ++..+++|++|++.+|++++|+||||||||||||+| .|...|..+. .+.
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~-~~~------ 703 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA-EVS------ 703 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE-EEE------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc-cch------
Confidence 46666654333 234688999999999999999999999999999999 4433332110 000
Q ss_pred CCCCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCC
Q psy10512 154 PASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDF 233 (629)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 233 (629)
. +..++..+|+. +.....+
T Consensus 704 ------------------------------------------------~---------~d~i~~~ig~~----d~l~~~l 722 (934)
T 3thx_A 704 ------------------------------------------------I---------VDCILARVGAG----DSQLKGV 722 (934)
T ss_dssp ------------------------------------------------C---------CSEEEEECC-------------
T ss_pred ------------------------------------------------H---------HHHHHHhcCch----hhHHHhH
Confidence 0 00122334443 1224568
Q ss_pred ChHHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHHHHHH----HHHHhh-cCCEEEEEecCHHHHHhhcceeEEEcCCe
Q psy10512 234 SGGWRMRIALARAL--YVKPHLLLLDEPTNHLDLDACVWL----EEELKT-YKRILVIISHSQDFLNGVCTNIIHLDKRK 306 (629)
Q Consensus 234 SGGqrqRv~LAraL--~~~P~iLLLDEPT~~LD~~~~~~l----~~~L~~-~~~tvIivsHd~~~l~~~~d~ii~l~~G~ 306 (629)
|+|+.+++.+|++| +.+|++|||||||+|||+.....+ .+.|.+ .+.++|++||+.++. .+||++..+.+|+
T Consensus 723 Stf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~ 801 (934)
T 3thx_A 723 STFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLH 801 (934)
T ss_dssp CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEE
T ss_pred hhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeE
Confidence 88888888888888 999999999999999999876555 344544 478999999997765 6899999999998
Q ss_pred EEEE
Q psy10512 307 LKYY 310 (629)
Q Consensus 307 i~~~ 310 (629)
+...
T Consensus 802 v~~~ 805 (934)
T 3thx_A 802 VTAL 805 (934)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
No 155
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.77 E-value=1.6e-20 Score=198.14 Aligned_cols=176 Identities=13% Similarity=0.076 Sum_probs=116.9
Q ss_pred EeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhc
Q psy10512 104 QDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVA 183 (629)
Q Consensus 104 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (629)
.++||++++|++++|+||||||||||+++|+|++.|..|.+.+...+ ... ... . .+ ...+. ....+..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D--~~r--~~a---~---eq-l~~~~-~r~~i~~ 215 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD--TFR--AAA---S---DQ-LEIWA-ERTGCEI 215 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC--CSC--HHH---H---HH-HHHHH-HHHTCEE
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccc--ccc--cch---h---HH-HHHHH-HhcCeEE
Confidence 46899999999999999999999999999999999988888775321 110 000 0 00 00000 0011111
Q ss_pred cCCh-------hHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCC--EE
Q psy10512 184 CEDD-------ESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH--LL 254 (629)
Q Consensus 184 ~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--iL 254 (629)
.+.. .+..+...... ....+ ..+++.+|+. +..++.+.+|| +||++|||||+.+|+ +|
T Consensus 216 v~q~~~~~~p~~tv~e~l~~~~-~~~~d--------~~lldt~Gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lL 282 (359)
T 2og2_A 216 VVAEGDKAKAATVLSKAVKRGK-EEGYD--------VVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILL 282 (359)
T ss_dssp ECCSSSSCCHHHHHHHHHHHHH-HTTCS--------EEEEECCCCS-SCCHHHHHHHH---HHHHHHHHHSTTCCSEEEE
T ss_pred EEecccccChhhhHHHHHHHHH-hCCCH--------HHHHHhcCCC-hhhhhHHHHHH---HHHHHHHHHHhcCCCceEE
Confidence 1110 01111111100 00000 1245677875 34567788999 999999999999999 99
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEec---------CHHHHHhhcceeEEEcCCeE
Q psy10512 255 LLDEPTNHLDLDACVWLEEELKTYKRILVIISH---------SQDFLNGVCTNIIHLDKRKL 307 (629)
Q Consensus 255 LLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsH---------d~~~l~~~~d~ii~l~~G~i 307 (629)
+|| ||++||+.... ..+-...+.|+|++|| .++.+...+..|.++..|+.
T Consensus 283 vLD-pttglD~~~~~--~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 283 VLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp EEE-GGGGGGGHHHH--HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EEc-CCCCCCHHHHH--HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 999 99999998653 2333456899999999 46777788889999998864
No 156
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.77 E-value=5.1e-21 Score=207.72 Aligned_cols=194 Identities=15% Similarity=0.115 Sum_probs=124.5
Q ss_pred eeEEEEeEEEEeC-CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhh
Q psy10512 86 RDVKIANFSITFH-GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 86 ~~i~i~nls~~y~-~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~ 164 (629)
..++++++++.|+ +..+|+++ |+|.+|++++|+|||||||||||++|+|+..|+.|.+.+.+... ..+..+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~-------~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERG-------REVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH-------HHHHHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceec-------HHHHHH
Confidence 3588999999998 67899999 99999999999999999999999999999988877666543210 000000
Q ss_pred hhchHHHHHHHHHHHHHhcc-CChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCC-chhhhcccCCCChHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVAC-EDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT-KEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~-~~~~~~~~~~LSGGqrqRv~ 242 (629)
.... .........+... ...........+..... ...++....+-. ..+.+ .+..||+|| |||+
T Consensus 202 ~~~~---~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~---------~~ae~~~~~~~~v~~~ld-~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 202 IENI---LGPDGRARSVVIAAPADVSPLLRMQGAAYAT---------RIAEDFRDRGQHVLLIMD-SLTRYAMAQ-REIA 267 (438)
T ss_dssp HHTT---THHHHHHTEEEEEECTTSCHHHHHHHHHHHH---------HHHHHHHTTTCEEEEEEE-CHHHHHHHH-HHHH
T ss_pred HHhh---ccccccCceEEEEECCCCCHHHHHHHHHHHH---------HHHHHHHhCCCCHHHHHH-hHHHHHHHH-HHHH
Confidence 0000 0000000111111 11111111111111100 000111111100 01122 267799999 9999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC------C------EEEEEecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 243 LARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK------R------ILVIISHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 243 LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~------~------tvIivsHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
|| +.+|++ |++||+.....+.+.|.+++ + ||+++|||++ ..+||++++|.+|+++..
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLS 336 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEEC
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEe
Confidence 99 888888 99999999999999987652 2 8999999999 678999999999999875
Q ss_pred cC
Q psy10512 311 GG 312 (629)
Q Consensus 311 ~g 312 (629)
+.
T Consensus 337 ~~ 338 (438)
T 2dpy_A 337 RR 338 (438)
T ss_dssp HH
T ss_pred CC
Confidence 43
No 157
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.77 E-value=2.1e-18 Score=187.74 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=66.7
Q ss_pred cccCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcceeE
Q psy10512 228 KKTKDFSGGWRMRIALARALY----VKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQDFLNGVCTNII 300 (629)
Q Consensus 228 ~~~~~LSGGqrqRv~LAraL~----~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd~~~l~~~~d~ii 300 (629)
+++..||||||||++||++|+ .+|++|||||||++||+..+..|.+.|.++ +.++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 445679999999999999999 589999999999999999999999999876 35999999997665 5799999
Q ss_pred EEc
Q psy10512 301 HLD 303 (629)
Q Consensus 301 ~l~ 303 (629)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 158
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.76 E-value=1.2e-18 Score=161.01 Aligned_cols=80 Identities=31% Similarity=0.412 Sum_probs=71.0
Q ss_pred ccCcCcCChhHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEEEecCHHHHHhhcC
Q psy10512 515 VCPIRQLSDGQKCRVVFA------YLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDFRLINQVAE 585 (629)
Q Consensus 515 ~~~~~~LSgGqkqrv~lA------ral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~vsHd~~~~~~~~d 585 (629)
.+++.+|||||||||+|| |+|+.+|++|||||||+|||+.++..+.+.|.++ +.+||+||||.+ +..+||
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d 130 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 130 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCC
Confidence 457899999999999876 8999999999999999999999999999999876 358999999995 568999
Q ss_pred EEEEE--eCCEE
Q psy10512 586 EIWIC--ENGKV 595 (629)
Q Consensus 586 ~i~~l--~~G~i 595 (629)
++++| ++|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 99999 56643
No 159
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.76 E-value=2.4e-19 Score=185.32 Aligned_cols=176 Identities=14% Similarity=0.120 Sum_probs=108.2
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCcc-EEEEC-CceeEEeeccchhcc-cCCCCCHHHHHhhc-C
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG-MVRKN-SHLRFARYHQHLHEL-LDLDISPLDYMLQS-F 491 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G-~i~~~-~~~~~~~~~q~~~~~-~~~~~~~~~~~~~~-~ 491 (629)
+|+++++.|.+|++++|+||||||||||++.|+|.+.|++| .|.+. .......+.+..... ........+.+... .
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~ 103 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREII 103 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCC
Confidence 69999999999999999999999999999999999999888 56432 211000000000000 01111111111100 0
Q ss_pred CChhhHHHHHHHHHHcCCCCcccccCcCcCChhH-HHHHHHHHHHccCCCEEEEeCCCC---C---CCH-HHHHHHHHHH
Q psy10512 492 PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQ-KCRVVFAYLAWQAPHLLLLDEPTN---H---LDM-ETIDALADAI 563 (629)
Q Consensus 492 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq-kqrv~lAral~~~p~lLlLDEPT~---~---LD~-~~~~~l~~~l 563 (629)
......+.+..+++..++. ... .+..+|.++ +||+. |+++..+|++|||||||+ + +|. .....+.+.|
T Consensus 104 ~~~~~~~~~~~~l~~~~l~--i~~-~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L 179 (296)
T 1cr0_A 104 ENGKFDQWFDELFGNDTFH--LYD-SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKL 179 (296)
T ss_dssp HHTHHHHHHHHHHSSSCEE--EEC-CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCEE--EEC-CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHH
Confidence 0001112233344333331 112 235789999 66666 999999999999999999 5 455 5566677666
Q ss_pred hh----cCceEEEEecCH--H--------------------HHHhhcCEEEEEeCCEE
Q psy10512 564 ND----FEGGLVLVSHDF--R--------------------LINQVAEEIWICENGKV 595 (629)
Q Consensus 564 ~~----~~~~vi~vsHd~--~--------------------~~~~~~d~i~~l~~G~i 595 (629)
++ ++.+||++||+. + .+..+||+|++|++|+.
T Consensus 180 ~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 180 KGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 44 467999999994 5 78889999999998864
No 160
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.75 E-value=1e-20 Score=182.54 Aligned_cols=142 Identities=19% Similarity=0.187 Sum_probs=98.1
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------eeEEeeccchhcccCCCCCHHHHHhhcCCChhhH
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFARYHQHLHELLDLDISPLDYMLQSFPEVKDR 497 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (629)
|++++|+||||||||||+++|+|+++ ++| |.+++. ..+++.+|.... .. .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g----~~---~------------ 59 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSG----TR---G------------ 59 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTS----CE---E------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEeccc----ce---e------------
Confidence 78999999999999999999999999 889 765431 224444443210 00 0
Q ss_pred HHHHHHHHHcCCCCc------ccccCcCcCChhHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHHhh
Q psy10512 498 EEMRKIIGRYGLTGR------QQVCPIRQLSDGQKCRV-VFAY---LAWQAPHLLLLDE--PTNHLDMETIDALADAIND 565 (629)
Q Consensus 498 ~~~~~~l~~~gl~~~------~~~~~~~~LSgGqkqrv-~lAr---al~~~p~lLlLDE--PT~~LD~~~~~~l~~~l~~ 565 (629)
.+..+++... ....+...+|+||++++ ++++ |++.+|++||||| ||+.+|+...+.|.+++..
T Consensus 60 -----~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~ 134 (189)
T 2i3b_A 60 -----PLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST 134 (189)
T ss_dssp -----EEEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred -----hhhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC
Confidence 0111222111 12234457999999988 4454 5899999999999 9999999999999999987
Q ss_pred cCceEE---EEecCH--HHHHhhcCEEEEEeCCEEEEe
Q psy10512 566 FEGGLV---LVSHDF--RLINQVAEEIWICENGKVTKW 598 (629)
Q Consensus 566 ~~~~vi---~vsHd~--~~~~~~~d~i~~l~~G~i~~~ 598 (629)
+...|| .||||. .++.+++ .+.+|+|+..
T Consensus 135 ~~~~ilgti~vsh~~~~~~vd~i~----~~~~~~i~~~ 168 (189)
T 2i3b_A 135 PGTIILGTIPVPKGKPLALVEEIR----NRKDVKVFNV 168 (189)
T ss_dssp SSCCEEEECCCCCSSCCTTHHHHH----TTCCSEEEEC
T ss_pred CCcEEEEEeecCCCCchHHHHHHe----ecCCcEEEEe
Confidence 655443 456987 5555554 4577777654
No 161
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.75 E-value=2.9e-20 Score=189.57 Aligned_cols=139 Identities=13% Similarity=0.129 Sum_probs=85.9
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc--------eeEEeeccchhcccCCCCCHHHHHhhcC--CChhhHH
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--------LRFARYHQHLHELLDLDISPLDYMLQSF--PEVKDRE 498 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 498 (629)
.++|+||||||||||+|+|+|+..|++|+|.+++. ..+++++|... +...+|+.+++..+. ......+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~--~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGG--VKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCC--CcCCceEEechhhhhhcccHHHHH
Confidence 48999999999999999999999999999987653 35778887642 223334444322111 1111122
Q ss_pred HHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHH
Q psy10512 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFR 578 (629)
Q Consensus 499 ~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~ 578 (629)
.+..++. . ......+.+|||||+|||++||+++. +++|||||.+||+...+. +..|.+. .+||+|.|..+
T Consensus 82 ~i~~~~~----~-~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~-l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 82 PIEKYIN----E-QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEF-MKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHH----H-HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHH-HHHHHTT-SEEEEEETTGG
T ss_pred HHHHHHH----H-HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHH-HHHHHhc-CcEEEEEeccc
Confidence 3333333 1 22234567999999999999999886 999999999999988544 4455554 78888888765
Q ss_pred H
Q psy10512 579 L 579 (629)
Q Consensus 579 ~ 579 (629)
.
T Consensus 152 ~ 152 (270)
T 3sop_A 152 T 152 (270)
T ss_dssp G
T ss_pred c
Confidence 3
No 162
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.75 E-value=7.9e-20 Score=185.41 Aligned_cols=141 Identities=17% Similarity=0.154 Sum_probs=102.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CCceEEEeecccCCCCCcchhhhhhh
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV-PDHIDIFHLTREMPASDKSALTCVME 166 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~-~g~i~i~~~~~~~~~~~~~~~~~~~~ 166 (629)
+++++|++. ++|+++| +++|++++|+||||||||||+++|+|++.|. +|.+.+.....++...
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~---------- 69 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFK---------- 69 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC----------
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecC----------
Confidence 455666543 5899999 8999999999999999999999999999887 8888765432111000
Q ss_pred chHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
... .+ +.. ..+|+.. ..| |++||+|
T Consensus 70 -------------------~~~----------~~--v~q-----------~~~gl~~-------~~l------~~~la~a 94 (261)
T 2eyu_A 70 -------------------HKK----------SI--VNQ-----------REVGEDT-------KSF------ADALRAA 94 (261)
T ss_dssp -------------------CSS----------SE--EEE-----------EEBTTTB-------SCH------HHHHHHH
T ss_pred -------------------Ccc----------ee--eeH-----------HHhCCCH-------HHH------HHHHHHH
Confidence 000 00 000 0234321 222 8999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcC
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDK 304 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~ 304 (629)
|..+|++||||||| |+++...+.+.. ..+.+||+++|+.+ +..+||++++|..
T Consensus 95 L~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 95 LREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred HhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 99999999999999 999987766654 45889999999988 5678999988753
No 163
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.75 E-value=8e-20 Score=185.37 Aligned_cols=138 Identities=14% Similarity=0.123 Sum_probs=100.6
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCC-ccEEEECCceeEEeeccchhccc
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS-VGMVRKNSHLRFARYHQHLHELL 477 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~~~~~~q~~~~~~ 477 (629)
+++++++++. .+|+++| +.+|++++|+||||||||||+++|+|+++|+ +|.|.+.+.. +.|+++...
T Consensus 5 ~~~l~~l~~~------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~--- 72 (261)
T 2eyu_A 5 IPEFKKLGLP------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKK--- 72 (261)
T ss_dssp -CCGGGSSCC------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSS---
T ss_pred CCChHHCCCH------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcc---
Confidence 3456677642 2799999 8999999999999999999999999999998 9999876532 233332210
Q ss_pred CCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q psy10512 478 DLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETID 557 (629)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~ 557 (629)
. + .. . ..+|+.. ..| |++||++|..+|++||||||| |+++..
T Consensus 73 ----~---~----v~--q---------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~ 114 (261)
T 2eyu_A 73 ----S---I----VN--Q---------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVE 114 (261)
T ss_dssp ----S---E----EE--E---------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred ----e---e----ee--H---------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence 0 0 00 0 0234321 122 899999999999999999999 999987
Q ss_pred HHHHHHhhcCceEEEEecCHHHHHhhcCEEE
Q psy10512 558 ALADAINDFEGGLVLVSHDFRLINQVAEEIW 588 (629)
Q Consensus 558 ~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~ 588 (629)
.+.+.. ..+.+|+++||+.+ +..+|||++
T Consensus 115 ~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~ 143 (261)
T 2eyu_A 115 TALRAA-ETGHLVFGTLHTNT-AIDTIHRIV 143 (261)
T ss_dssp HHHHHH-HTTCEEEEEECCSS-HHHHHHHHH
T ss_pred HHHHHH-ccCCEEEEEeCcch-HHHHHHHHh
Confidence 776654 34778999999987 456677654
No 164
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.75 E-value=9.8e-19 Score=204.62 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=106.5
Q ss_pred CeEEEEEEEEEEcC---CCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHH--------HcCCCCCccEEEECCceeE
Q psy10512 398 PVIMVQNVSFRYSD---DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI--------YGDLTPSVGMVRKNSHLRF 466 (629)
Q Consensus 398 ~~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l--------~G~~~p~~G~i~~~~~~~~ 466 (629)
..|.+++...-+-. +...+++|++|++.+|++++|+||||||||||||+| +|...|..+.. +
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------~ 702 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------V 702 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-------E
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-------c
Confidence 34566655432211 123478999999999999999999999999999999 66555543221 1
Q ss_pred EeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHH--ccCCCEEEE
Q psy10512 467 ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA--WQAPHLLLL 544 (629)
Q Consensus 467 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlL 544 (629)
+.+. .++.++|+.+. ....+|+|+.+++.+|+++ +.+|+||||
T Consensus 703 ~~~d-------------------------------~i~~~ig~~d~----l~~~lStf~~e~~~~a~il~~a~~~sLlLL 747 (934)
T 3thx_A 703 SIVD-------------------------------CILARVGAGDS----QLKGVSTFMAEMLETASILRSATKDSLIII 747 (934)
T ss_dssp ECCS-------------------------------EEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred hHHH-------------------------------HHHHhcCchhh----HHHhHhhhHHHHHHHHHHHHhccCCcEEEE
Confidence 1110 11222333321 2346788888888888888 999999999
Q ss_pred eCCCCCCCHHHHHHH----HHHHhh-cCceEEEEecCHHHHHhhcCEEEEEeCCEEE
Q psy10512 545 DEPTNHLDMETIDAL----ADAIND-FEGGLVLVSHDFRLINQVAEEIWICENGKVT 596 (629)
Q Consensus 545 DEPT~~LD~~~~~~l----~~~l~~-~~~~vi~vsHd~~~~~~~~d~i~~l~~G~i~ 596 (629)
||||+|||+.....+ .+.+.+ .+.++|++|||.++. .+||++..+.+|++.
T Consensus 748 DEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp ESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEE
Confidence 999999999877665 333433 367899999997766 689999888888875
No 165
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.74 E-value=9.9e-19 Score=203.98 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=99.0
Q ss_pred eEEEEeEEEEe-------CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcc
Q psy10512 87 DVKIANFSITF-------HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKS 159 (629)
Q Consensus 87 ~i~i~nls~~y-------~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~ 159 (629)
.|.+++...-+ ++..+++|+||++++|++++|+||||||||||||+|+++....
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------- 700 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------- 700 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-------------------
Confidence 36666544322 2456889999999999999999999999999999997531100
Q ss_pred hhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHH
Q psy10512 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRM 239 (629)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrq 239 (629)
+...+.+... ..+.. +..++..+|+. +...+..++||+|++|
T Consensus 701 --------------------q~g~~vpa~~--------~~i~~---------~d~i~~~ig~~-d~l~~~~stfs~em~~ 742 (918)
T 3thx_B 701 --------------------QIGSYVPAEE--------ATIGI---------VDGIFTRMGAA-DNIYKGRSTFMEELTD 742 (918)
T ss_dssp --------------------HHTCCBSSSE--------EEEEC---------CSEEEEEC-----------CCHHHHHHH
T ss_pred --------------------hcCccccchh--------hhhhH---------HHHHHHhCChH-HHHHHhHHHhhHHHHH
Confidence 0000000000 00000 01123344543 2345567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-HH---Hh-hcCCEEEEEecCHHHHHhhccee
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLE-EE---LK-TYKRILVIISHSQDFLNGVCTNI 299 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~-~~---L~-~~~~tvIivsHd~~~l~~~~d~i 299 (629)
++.|+++ +.+|+||||||||+|||+.....+. .. |. +.+.|+|++|||++++ .+||+.
T Consensus 743 ~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~ 805 (918)
T 3thx_B 743 TAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKNY 805 (918)
T ss_dssp HHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHT
T ss_pred HHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhc
Confidence 9999999 8999999999999999998776654 33 32 2478999999998765 456543
No 166
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.74 E-value=1.4e-18 Score=199.83 Aligned_cols=145 Identities=22% Similarity=0.217 Sum_probs=106.5
Q ss_pred eEEEEEEEEEEcC---CCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-CCccEEEECCceeEEeeccchh
Q psy10512 399 VIMVQNVSFRYSD---DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-PSVGMVRKNSHLRFARYHQHLH 474 (629)
Q Consensus 399 ~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~~~~~~~~q~~~ 474 (629)
.|.+++.. ++- +...+++|+||+ |++++|+||||||||||||+|+|+.. |+.|.+.......+++++|.+
T Consensus 550 ~i~i~~~r--HP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~- 623 (765)
T 1ewq_A 550 RLQIRAGR--HPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIY- 623 (765)
T ss_dssp SEEEEEEC--CTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEE-
T ss_pred cEEEEEeE--CceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhh-
Confidence 46777763 321 223489999998 99999999999999999999999874 677875432223344443311
Q ss_pred cccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHH--ccCCCEEEEeCC---CC
Q psy10512 475 ELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA--WQAPHLLLLDEP---TN 549 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlLDEP---T~ 549 (629)
..+++.+. ....+|+|+++++.+++++ +.+|++|||||| |+
T Consensus 624 ------------------------------~~~~~~d~----l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs 669 (765)
T 1ewq_A 624 ------------------------------TRIGASDD----LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTS 669 (765)
T ss_dssp ------------------------------EECCC----------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSC
T ss_pred ------------------------------ccCCHHHH----HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCC
Confidence 01111111 1124799999999999999 999999999999 99
Q ss_pred CCCHHHH-HHHHHHHhhcCceEEEEecCHHHHHhhc
Q psy10512 550 HLDMETI-DALADAINDFEGGLVLVSHDFRLINQVA 584 (629)
Q Consensus 550 ~LD~~~~-~~l~~~l~~~~~~vi~vsHd~~~~~~~~ 584 (629)
+||..+. ..+.+.|.+.+.++|++|||.+++. +|
T Consensus 670 ~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 670 SLDGVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 9999886 5788888887789999999998874 44
No 167
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.73 E-value=5.3e-19 Score=177.78 Aligned_cols=168 Identities=15% Similarity=0.144 Sum_probs=102.5
Q ss_pred CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEEC-CceeEEeeccchhcccCCCCCHHHHHhh--c
Q psy10512 414 PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN-SHLRFARYHQHLHELLDLDISPLDYMLQ--S 490 (629)
Q Consensus 414 ~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~-~~~~~~~~~q~~~~~~~~~~~~~~~~~~--~ 490 (629)
..+|+|+||++.+|+++||+||||||||||+++|+|++ |.+.++ ....+++++|.. +...++..++... .
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~---~~~~l~~~~~~~~~~~ 84 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR---FYKVLTAEQKAKALKG 84 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG---GBCCCCHHHHHHHHTT
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc---CccccCHhHhhhhhcc
Confidence 34899999999999999999999999999999999976 443222 122466777762 2334566554321 1
Q ss_pred ---CC--ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 491 ---FP--EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND 565 (629)
Q Consensus 491 ---~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~ 565 (629)
+. .....+.+.+.|+.+. .. ...++..||+||+||+.+ ++++.+|+++|||||...+|.. +.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~L~~l~--~~-~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~ 152 (245)
T 2jeo_A 85 QYNFDHPDAFDNDLMHRTLKNIV--EG-KTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRD 152 (245)
T ss_dssp CCCTTSGGGBCHHHHHHHHHHHH--TT-CCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHT
T ss_pred CCCCCCcccccHHHHHHHHHHHH--CC-CCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHH
Confidence 11 1122344556666542 22 234567999999999988 5888899999999998888764 222
Q ss_pred -cCceEEEEecC-HHHHHhhcCEEEEEeCCEEEEecCCHHHHHHHH
Q psy10512 566 -FEGGLVLVSHD-FRLINQVAEEIWICENGKVTKWEGNILDYKETL 609 (629)
Q Consensus 566 -~~~~vi~vsHd-~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 609 (629)
.+.+|+++||+ ......+++.+ ++|. ++++..+.+
T Consensus 153 ~~~~~i~v~th~~~~~~r~~~r~~---~~G~------~~e~~~~~~ 189 (245)
T 2jeo_A 153 MFHLRLFVDTDSDVRLSRRVLRDV---RRGR------DLEQILTQY 189 (245)
T ss_dssp TCSEEEEEECCHHHHHHHHHHHHT---C---------CHHHHHHHH
T ss_pred hcCeEEEEECCHHHHHHHHHHHHH---HcCC------CHHHHHHHH
Confidence 36789999997 55556666555 5563 455554443
No 168
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.72 E-value=2e-18 Score=201.39 Aligned_cols=138 Identities=14% Similarity=0.135 Sum_probs=92.3
Q ss_pred CeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCC-ccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCC
Q psy10512 414 PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS-VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFP 492 (629)
Q Consensus 414 ~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 492 (629)
..|++|+||++.+|++++|+||||||||||||+|+++.... .|.........++.+
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~----------------------- 716 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIV----------------------- 716 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECC-----------------------
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHH-----------------------
Confidence 34899999999999999999999999999999997642110 110000000000100
Q ss_pred ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-HHHhh----cC
Q psy10512 493 EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALA-DAIND----FE 567 (629)
Q Consensus 493 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~-~~l~~----~~ 567 (629)
..++.++|+.+... ...+++|+||+|++.|+++ +.+|+||||||||+|||+.....+. ..+.. .+
T Consensus 717 --------d~i~~~ig~~d~l~-~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g 786 (918)
T 3thx_B 717 --------DGIFTRMGAADNIY-KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK 786 (918)
T ss_dssp --------SEEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred --------HHHHHhCChHHHHH-HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 01222344433322 3457899999999999999 8999999999999999998877765 44432 36
Q ss_pred ceEEEEecCHHHHHhhcC
Q psy10512 568 GGLVLVSHDFRLINQVAE 585 (629)
Q Consensus 568 ~~vi~vsHd~~~~~~~~d 585 (629)
.++|++|||.+++ .+||
T Consensus 787 ~tvl~vTH~~el~-~l~~ 803 (918)
T 3thx_B 787 SLTLFVTHYPPVC-ELEK 803 (918)
T ss_dssp CEEEEECSCGGGG-GHHH
T ss_pred CeEEEEeCcHHHH-HHHh
Confidence 7899999998876 3454
No 169
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.71 E-value=8.9e-18 Score=168.28 Aligned_cols=72 Identities=13% Similarity=0.015 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCC-----HHHHHHHHHHH---hhcCCEEEEEecCHHHH---------Hhh
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLD-----LDACVWLEEEL---KTYKRILVIISHSQDFL---------NGV 295 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD-----~~~~~~l~~~L---~~~~~tvIivsHd~~~l---------~~~ 295 (629)
.+.++......+..-..+|++|+|||||++|| +..+..+.+++ ++.+.|||+|||+++.+ ..+
T Consensus 118 ~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~ 197 (251)
T 2ehv_A 118 FNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEF 197 (251)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGG
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhE
Confidence 34455555555555568999999999999997 55555555544 55689999999999998 678
Q ss_pred c-ceeEEEcC
Q psy10512 296 C-TNIIHLDK 304 (629)
Q Consensus 296 ~-d~ii~l~~ 304 (629)
| |+|++|+.
T Consensus 198 ~aD~vi~l~~ 207 (251)
T 2ehv_A 198 IARGVIVLDL 207 (251)
T ss_dssp GCSEEEEEEE
T ss_pred eeeEEEEEee
Confidence 8 99999963
No 170
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.71 E-value=9.6e-18 Score=168.06 Aligned_cols=180 Identities=13% Similarity=0.087 Sum_probs=97.2
Q ss_pred eEEEEEEEEEEcCCCCeEeeeee-EEEeCCCEEEEECCCCCchHHHHHHHH--cCCCCCccEEEECCceeEEeeccchhc
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLE-FGIDLDTRLALVGPNGAGKSTLLNLIY--GDLTPSVGMVRKNSHLRFARYHQHLHE 475 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vs-l~i~~Ge~i~ivG~NGsGKSTLlk~l~--G~~~p~~G~i~~~~~~~~~~~~q~~~~ 475 (629)
++++++++..|+ .|+.+- =.|++|++++|+||||||||||+++|+ |+..+..|.+.+.+........+..
T Consensus 6 ~~~~~~i~tg~~-----~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (251)
T 2ehv_A 6 YQPVRRVKSGIP-----GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREM-- 78 (251)
T ss_dssp --CCCEECCSCT-----TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHH--
T ss_pred ccccceeecCCH-----hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHH--
Confidence 355666665553 234331 178999999999999999999999999 7656666666654321100000000
Q ss_pred ccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC---
Q psy10512 476 LLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD--- 552 (629)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD--- 552 (629)
......+.+............ ... ..+.............+.++........+-..+|++|+|||||++||
T Consensus 79 -~~~g~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~ 152 (251)
T 2ehv_A 79 -ASFGWDFEKYEKEGKIAIVDG--VSS---VVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE 152 (251)
T ss_dssp -HTTTCCHHHHHHTTSEEEEC------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS
T ss_pred -HHcCCChHHHhhcCCEEEEEc--ccc---ccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC
Confidence 001111111110000000000 000 00000000000112234555555555555678999999999999997
Q ss_pred --HHHHHHHHHHHh---hcCceEEEEecCHHHH---------Hhhc-CEEEEEe
Q psy10512 553 --METIDALADAIN---DFEGGLVLVSHDFRLI---------NQVA-EEIWICE 591 (629)
Q Consensus 553 --~~~~~~l~~~l~---~~~~~vi~vsHd~~~~---------~~~~-d~i~~l~ 591 (629)
+..+..+.+++. +.+.|||+|||+...+ ..+| |+|++|+
T Consensus 153 d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 153 EERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp SGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 555555665554 4578999999999998 6788 9999995
No 171
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.71 E-value=2.1e-17 Score=163.35 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=43.4
Q ss_pred HHHHHHHcc-------CCCEEEEeCCCCCCCHH-------H-----HHHHHH----HHhhcCCEEEEEec----CHHHHH
Q psy10512 241 IALARALYV-------KPHLLLLDEPTNHLDLD-------A-----CVWLEE----ELKTYKRILVIISH----SQDFLN 293 (629)
Q Consensus 241 v~LAraL~~-------~P~iLLLDEPT~~LD~~-------~-----~~~l~~----~L~~~~~tvIivsH----d~~~l~ 293 (629)
+..+++++. +|++|+|||||++||+. . ...+.+ ..++.+.|||+||| +-..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~ 188 (231)
T 4a74_A 109 VQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILA 188 (231)
T ss_dssp HHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhH
Confidence 455555544 99999999999999983 1 113333 33456899999999 555599
Q ss_pred hhcceeEEEcCC
Q psy10512 294 GVCTNIIHLDKR 305 (629)
Q Consensus 294 ~~~d~ii~l~~G 305 (629)
.+||++++|++|
T Consensus 189 ~~~d~~l~l~~~ 200 (231)
T 4a74_A 189 HSATLRVYLRKG 200 (231)
T ss_dssp -CCSEEEEEEEC
T ss_pred hhceEEEEEEec
Confidence 999999999875
No 172
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.70 E-value=1.8e-17 Score=163.91 Aligned_cols=149 Identities=17% Similarity=0.204 Sum_probs=83.1
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHH
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRK 502 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (629)
.|++|++++|+||||||||||+++|+|++.|..|.....+. ..|+.... .... +.+..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~--~i~~~~~~------~~~~--------------~~i~~ 78 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGS--VIWIDTEN------TFRP--------------ERIRE 78 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCE--EEEEESSS------CCCH--------------HHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCE--EEEEECCC------CCCH--------------HHHHH
Confidence 68999999999999999999999999966653322111111 11111100 0000 11111
Q ss_pred HHHHcCCCCcc---cccCcCcCChhHH-HHHHHHHHHcc-------CCCEEEEeCCCCCCCHHH------------HHHH
Q psy10512 503 IIGRYGLTGRQ---QVCPIRQLSDGQK-CRVVFAYLAWQ-------APHLLLLDEPTNHLDMET------------IDAL 559 (629)
Q Consensus 503 ~l~~~gl~~~~---~~~~~~~LSgGqk-qrv~lAral~~-------~p~lLlLDEPT~~LD~~~------------~~~l 559 (629)
+...+++.... .-.....++++++ +.+..+..++. +|++|+|||||++||+.. ...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~ 158 (231)
T 4a74_A 79 IAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 158 (231)
T ss_dssp HHHHTTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHH
Confidence 22222221100 0001123444443 33555555554 999999999999999841 1234
Q ss_pred HHHH----hhcCceEEEEec----CHHHHHhhcCEEEEEeCC
Q psy10512 560 ADAI----NDFEGGLVLVSH----DFRLINQVAEEIWICENG 593 (629)
Q Consensus 560 ~~~l----~~~~~~vi~vsH----d~~~~~~~~d~i~~l~~G 593 (629)
++.| ++.+.|||+||| +-..+..+||++++|++|
T Consensus 159 ~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 159 LADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 4433 345789999999 555599999999999875
No 173
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.70 E-value=9.5e-20 Score=175.79 Aligned_cols=159 Identities=13% Similarity=0.081 Sum_probs=99.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecc-cCCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHH
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTR-EMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQE 191 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (629)
|++++|+||||||||||+++|+|++. ++| +.+.+... ..... ...+..+. + . .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~-~~~ig~~~------------------~-~-~--- 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQG-GRRIGFDV------------------V-T-L--- 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETT-SSEEEEEE------------------E-E-T---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhh-hceEEEEE------------------E-e-c---
Confidence 78999999999999999999999987 788 76643221 00000 00000000 0 0 0
Q ss_pred HHHHHHhhhhccChhhHHHHHHHHHHhCCCCc------hhhhcccCCCChHHHHHH-HHHH---HHccCCCEEEEeC--C
Q psy10512 192 QLMDIYDRLDDISADTAEARAANILHGLGFTK------EMQQKKTKDFSGGWRMRI-ALAR---ALYVKPHLLLLDE--P 259 (629)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~------~~~~~~~~~LSGGqrqRv-~LAr---aL~~~P~iLLLDE--P 259 (629)
.... ..+..+++.. ....++...+|||||+++ +|++ |++.+|+|||||| |
T Consensus 55 -----~g~~-------------~~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~ 116 (189)
T 2i3b_A 55 -----SGTR-------------GPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGK 116 (189)
T ss_dssp -----TSCE-------------EEEEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCST
T ss_pred -----ccce-------------ehhhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCc
Confidence 0000 0011122211 123445667999999998 4455 6899999999999 9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCEEE---EEecCHHHHHhhcceeEEEcCCeEEEEc-CcHHHH
Q psy10512 260 TNHLDLDACVWLEEELKTYKRILV---IISHSQDFLNGVCTNIIHLDKRKLKYYG-GNYEAF 317 (629)
Q Consensus 260 T~~LD~~~~~~l~~~L~~~~~tvI---ivsHd~~~l~~~~d~ii~l~~G~i~~~~-g~~~~~ 317 (629)
|+.+|+.....|.++|..+..+|| .||||.+ ..++|+|..+.+|+|+... .|.+..
T Consensus 117 ~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~~~nr~~~ 176 (189)
T 2i3b_A 117 MELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVTKENRNHL 176 (189)
T ss_dssp TTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECCSSSGGGH
T ss_pred cccccHHHHHHHHHHHhCCCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeChHhHHHH
Confidence 999999999999999987655453 4559973 2344555556777777644 344433
No 174
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.70 E-value=1.1e-17 Score=165.46 Aligned_cols=167 Identities=14% Similarity=0.048 Sum_probs=104.8
Q ss_pred eeeeEeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHH
Q psy10512 100 CELLQDTML-ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLA 178 (629)
Q Consensus 100 ~~~L~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (629)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+..|.+.+... +.. .. .+....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~--~~~--------------~~--~~~~~~ 70 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT--EES--------------RD--SIIRQA 70 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES--SSC--------------HH--HHHHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc--ccC--------------HH--HHHHHH
Confidence 456888887 89999999999999999999999999877666666654321 110 00 000000
Q ss_pred HHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCC--EEEE
Q psy10512 179 EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH--LLLL 256 (629)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--iLLL 256 (629)
..+... ...... ..+..++.. ...++ . .. .....|.++.++...+.+...+|+ +||+
T Consensus 71 ~~~~~~-~~~~~~------~~~~~~~~~---------~~~~~-~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llil 129 (235)
T 2w0m_A 71 KQFNWD-FEEYIE------KKLIIIDAL---------MKEKE-D-QW---SLVNLTPEELVNKVIEAKQKLGYGKARLVI 129 (235)
T ss_dssp HHTTCC-CGGGBT------TTEEEEECC---------C-----C-TT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHhcch-HHHHhh------CCEEEEecc---------ccccC-c-ee---eecCCCHHHHHHHHHHHHHhhCCCceEEEE
Confidence 011100 000000 000000000 00001 0 01 123459999999888888888999 9999
Q ss_pred eCCCCCC--CHHHHHHHHHHHh----hcCCEEEEEecCH--------HHHHhhcceeEEEcCC
Q psy10512 257 DEPTNHL--DLDACVWLEEELK----TYKRILVIISHSQ--------DFLNGVCTNIIHLDKR 305 (629)
Q Consensus 257 DEPT~~L--D~~~~~~l~~~L~----~~~~tvIivsHd~--------~~l~~~~d~ii~l~~G 305 (629)
||||+.+ |+.....+.+.|+ +.+.|||++||+. ..+..+||+|++|+..
T Consensus 130 De~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 130 DSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp ETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred ECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9999888 9877777766654 4578999999999 4588999999999864
No 175
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.70 E-value=4.8e-18 Score=170.74 Aligned_cols=160 Identities=11% Similarity=0.059 Sum_probs=86.1
Q ss_pred CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEE-------EeecccCCCCCcchhhhhhhchHH
Q psy10512 98 HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI-------FHLTREMPASDKSALTCVMEVDEE 170 (629)
Q Consensus 98 ~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i-------~~~~~~~~~~~~~~~~~~~~~~~~ 170 (629)
+++.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.+ ....++..... .
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~~~---------l--- 73 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFYKV---------L--- 73 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGBCC---------C---
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCccc---------c---
Confidence 5677999999999999999999999999999999999964 33211 11111100000 0
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhhhhccC--hhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHc
Q psy10512 171 RVRLEKLAEQLVACEDDESQEQLMDIYDRLDDIS--ADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALY 248 (629)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 248 (629)
+..++.........+. .......+.+.|+.+. .....++..||+||+||+++ ++++
T Consensus 74 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~-~~~~ 131 (245)
T 2jeo_A 74 ------------------TAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE-TTVV 131 (245)
T ss_dssp ------------------CHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHH---TTCCEEECCEETTTTEECSS-CEEE
T ss_pred ------------------CHhHhhhhhccCCCCCCcccccHHHHHHHHHHHH---CCCCeecccccccccCccCc-eEEe
Confidence 0000000000000010 0001123344444331 23456788999999999988 6888
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCH-HHHHhhcceeEEEcCC
Q psy10512 249 VKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQ-DFLNGVCTNIIHLDKR 305 (629)
Q Consensus 249 ~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~-~~l~~~~d~ii~l~~G 305 (629)
.+|+++|||||...+|.. +.+ ..+.+|+++||+. .....+++++ ++|
T Consensus 132 ~~~~~lilDg~~~~~~~~----l~~---~~~~~i~v~th~~~~~~r~~~r~~---~~G 179 (245)
T 2jeo_A 132 YPADVVLFEGILVFYSQE----IRD---MFHLRLFVDTDSDVRLSRRVLRDV---RRG 179 (245)
T ss_dssp CCCSEEEEECTTTTTSHH----HHT---TCSEEEEEECCHHHHHHHHHHHHT---C--
T ss_pred cCCCEEEEeCccccccHH----HHH---hcCeEEEEECCHHHHHHHHHHHHH---HcC
Confidence 999999999999888864 211 1377999999974 4445555555 555
No 176
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.69 E-value=1e-17 Score=192.81 Aligned_cols=145 Identities=21% Similarity=0.141 Sum_probs=102.5
Q ss_pred eEEEEeEEEEe---CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCCceEEEeecccCCCCCcchhh
Q psy10512 87 DVKIANFSITF---HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV-PVPDHIDIFHLTREMPASDKSALT 162 (629)
Q Consensus 87 ~i~i~nls~~y---~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~-p~~g~i~i~~~~~~~~~~~~~~~~ 162 (629)
.|.+++...-+ ++..+++|+||+ |++++|+||||||||||||+|+|+.. +..|.+. +. ....+.
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v--------pa-~~~~i~ 617 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV--------PA-EEAHLP 617 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB--------SS-SEEEEC
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee--------eh-hcccee
Confidence 47777764323 345689999999 99999999999999999999999753 4445421 00 000000
Q ss_pred hhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHH
Q psy10512 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIA 242 (629)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~ 242 (629)
.. + . ++..++..+. ....+|+|+++++.
T Consensus 618 --------------------~v-~------------~---------------i~~~~~~~d~----l~~g~S~~~~e~~~ 645 (765)
T 1ewq_A 618 --------------------LF-D------------G---------------IYTRIGASDD----LAGGKSTFMVEMEE 645 (765)
T ss_dssp --------------------CC-S------------E---------------EEEECCC----------CCSHHHHHHHH
T ss_pred --------------------eH-H------------H---------------hhccCCHHHH----HHhcccHHHHHHHH
Confidence 00 0 0 0111222211 12358999999999
Q ss_pred HHHHH--ccCCCEEEEeCC---CCCCCHHHHH-HHHHHHhhcCCEEEEEecCHHHHHhhc
Q psy10512 243 LARAL--YVKPHLLLLDEP---TNHLDLDACV-WLEEELKTYKRILVIISHSQDFLNGVC 296 (629)
Q Consensus 243 LAraL--~~~P~iLLLDEP---T~~LD~~~~~-~l~~~L~~~~~tvIivsHd~~~l~~~~ 296 (629)
+|++| +.+|++|||||| |++||..+.. .+.+.|.+.+.|+|++|||.++.. +|
T Consensus 646 la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 646 VALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp HHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred HHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 99999 999999999999 9999998874 688888877899999999998864 44
No 177
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.69 E-value=3.1e-17 Score=162.25 Aligned_cols=164 Identities=12% Similarity=0.062 Sum_probs=103.5
Q ss_pred EeeeeeE-EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeE-EeeccchhcccCCCCCHHHHHhhcCCC
Q psy10512 416 IYRNLEF-GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRF-ARYHQHLHELLDLDISPLDYMLQSFPE 493 (629)
Q Consensus 416 il~~vsl-~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~~~~ 493 (629)
.|+++.+ .+++|++++|+||||||||||++.|++...+..|.|.+.+.... ..+..... .+.... ... ... .
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~--~~~-~~~--~ 84 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAK-QFNWDF--EEY-IEK--K 84 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHH-HTTCCC--GGG-BTT--T
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHH-HhcchH--HHH-hhC--C
Confidence 5788887 89999999999999999999999999988887777754321000 00000000 000000 000 000 0
Q ss_pred hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCC--CHHHHHHHHHHHhh----
Q psy10512 494 VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH--LLLLDEPTNHL--DMETIDALADAIND---- 565 (629)
Q Consensus 494 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPT~~L--D~~~~~~l~~~l~~---- 565 (629)
... +......++ .. ......|.++.++...+.+...+|+ +||+||||+.+ |+.....+.+.|.+
T Consensus 85 ~~~---~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~ 156 (235)
T 2w0m_A 85 LII---IDALMKEKE-DQ----WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNK 156 (235)
T ss_dssp EEE---EECCC-----CT----TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHH
T ss_pred EEE---EeccccccC-ce----eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHh
Confidence 000 000000001 00 0113459999999888888888999 99999999888 98887777777654
Q ss_pred cCceEEEEecCH--------HHHHhhcCEEEEEeCC
Q psy10512 566 FEGGLVLVSHDF--------RLINQVAEEIWICENG 593 (629)
Q Consensus 566 ~~~~vi~vsHd~--------~~~~~~~d~i~~l~~G 593 (629)
.+.+||++||+. ..+..+||+|++|+..
T Consensus 157 ~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 157 WNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp TTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 467999999999 5588999999999854
No 178
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.67 E-value=1.3e-16 Score=151.32 Aligned_cols=93 Identities=22% Similarity=0.250 Sum_probs=77.2
Q ss_pred hhcccCCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhccee
Q psy10512 226 QQKKTKDFSGGWRMRIALARALYV----KPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNI 299 (629)
Q Consensus 226 ~~~~~~~LSGGqrqRv~LAraL~~----~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~i 299 (629)
..+++..||||||||++||++|+. +|++|||||||++||+.++..+.++|+++ +.++|+|||+...+ .+||++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEE
Confidence 456688999999999999999974 46999999999999999999999999876 46899999997654 689999
Q ss_pred EE--EcCCeEEEEcCcHHHHHH
Q psy10512 300 IH--LDKRKLKYYGGNYEAFCK 319 (629)
Q Consensus 300 i~--l~~G~i~~~~g~~~~~~~ 319 (629)
+. +.+|.......+.+.+.+
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEEETTEEEEEECCHHHHHH
T ss_pred EEEEecCCEEEEEEEEcHHHHH
Confidence 84 457876666666665443
No 179
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.67 E-value=3.4e-19 Score=174.53 Aligned_cols=142 Identities=13% Similarity=0.033 Sum_probs=106.0
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcC--CChhhHHHHH
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSF--PEVKDREEMR 501 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 501 (629)
.++|+++||+||||||||||+++|+|++.| .+++++|+.........++.+.....+ +.....+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYL 71 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHH
Confidence 568999999999999999999999999876 356666654321112345544432222 2223456678
Q ss_pred HHHHHcCCCCcccccCcCcCChhH----HHHHHHHHHHccCCCEEEEeCCCCC-------CCHHHHHHHHHHHhhc----
Q psy10512 502 KIIGRYGLTGRQQVCPIRQLSDGQ----KCRVVFAYLAWQAPHLLLLDEPTNH-------LDMETIDALADAINDF---- 566 (629)
Q Consensus 502 ~~l~~~gl~~~~~~~~~~~LSgGq----kqrv~lAral~~~p~lLlLDEPT~~-------LD~~~~~~l~~~l~~~---- 566 (629)
++++.+++.... ..|+..+|+|+ +||+++|++++.+|.+|++||||++ ||+.....+.+.+.+.
T Consensus 72 ~~l~~~~~~~~~-~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~ 150 (211)
T 3asz_A 72 EHAQALLRGLPV-EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLER 150 (211)
T ss_dssp HHHHHHHTTCCE-EECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCc-CCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 888888887654 45788999996 4788999999999999999999999 9998888888777653
Q ss_pred CceEEEEecCH
Q psy10512 567 EGGLVLVSHDF 577 (629)
Q Consensus 567 ~~~vi~vsHd~ 577 (629)
+.++++++|+.
T Consensus 151 g~t~~~~~~~~ 161 (211)
T 3asz_A 151 GRSLEGVVAQY 161 (211)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 66888899984
No 180
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.67 E-value=1.4e-18 Score=177.01 Aligned_cols=148 Identities=14% Similarity=0.108 Sum_probs=80.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCC-cchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHH
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD-KSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQL 193 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (629)
.++||||||||||||+++|+|+..|++|++.+.+.. ++... ...+..+.+.. ......+..++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~--i~~~~~~~~i~~v~q~~-------------~~~~~ltv~d~- 67 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEK--IPKTVEIKAIGHVIEEG-------------GVKMKLTVIDT- 67 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC-----------------CCEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcc--cCcceeeeeeEEEeecC-------------CCcCCceEEec-
Confidence 489999999999999999999999999988775432 11110 01111111100 00000000000
Q ss_pred HHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy10512 194 MDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE 273 (629)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~ 273 (629)
..+..... .....+.+.+++. ....+..+.+|||||+|||+||||++. +++|||||++||+.... ++.
T Consensus 68 ~~~g~~~~---~~~~~~~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-~l~ 135 (270)
T 3sop_A 68 PGFGDQIN---NENCWEPIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-FMK 135 (270)
T ss_dssp CC--CCSB---CTTCSHHHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-HHH
T ss_pred hhhhhhcc---cHHHHHHHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-HHH
Confidence 00000000 0111122333333 244566788999999999999999986 99999999999998854 444
Q ss_pred HHhhcCCEEEEEecCHHH
Q psy10512 274 ELKTYKRILVIISHSQDF 291 (629)
Q Consensus 274 ~L~~~~~tvIivsHd~~~ 291 (629)
.|.+. .+||+|.|..+.
T Consensus 136 ~L~~~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 136 HLSKV-VNIIPVIAKADT 152 (270)
T ss_dssp HHHTT-SEEEEEETTGGG
T ss_pred HHHhc-CcEEEEEecccc
Confidence 55555 888888887543
No 181
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.65 E-value=1.5e-15 Score=143.98 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=77.9
Q ss_pred cCcCcCChhHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhhcCEEEE
Q psy10512 516 CPIRQLSDGQKCRVVFAYLAWQ----APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWI 589 (629)
Q Consensus 516 ~~~~~LSgGqkqrv~lAral~~----~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~~d~i~~ 589 (629)
+++..||||||||++||++|+. +|+++||||||++||+.+...+.+.|.++ ..++|+|||+...+ .+||+++.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~~ 138 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKIIG 138 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEEE
Confidence 4678999999999999999974 56999999999999999999999999876 35799999998765 68999986
Q ss_pred E--eCCEEEEecCCHHHHHHHH
Q psy10512 590 C--ENGKVTKWEGNILDYKETL 609 (629)
Q Consensus 590 l--~~G~i~~~~g~~~~~~~~~ 609 (629)
+ .+|.......+..++.+.+
T Consensus 139 v~~~~g~s~~~~~~~~~~~~~~ 160 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMKIL 160 (173)
T ss_dssp EEEETTEEEEEECCHHHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHHHH
Confidence 5 5787665667777766544
No 182
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.64 E-value=4.7e-17 Score=158.56 Aligned_cols=163 Identities=17% Similarity=0.165 Sum_probs=97.4
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCC-----CCCccEEEECC------ceeEE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDL-----TPSVGMVRKNS------HLRFA 467 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~-----~p~~G~i~~~~------~~~~~ 467 (629)
+|+++|++|.|+ .. ++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|.+...+ ...+.
T Consensus 3 ~l~~~~~~~~~~--~~-~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 3 NLNYQQTHFVMS--AP-DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp --------CEEE--ES-SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred chhhhhhhheee--cC-CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 578999999996 23 6777 889999999999999999999999999998 88888765321 11110
Q ss_pred eeccchhcccCCCC-----CHH-HHHhh-------------cCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHH
Q psy10512 468 RYHQHLHELLDLDI-----SPL-DYMLQ-------------SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCR 528 (629)
Q Consensus 468 ~~~q~~~~~~~~~~-----~~~-~~~~~-------------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr 528 (629)
..+........... ... .++.. ..+.......+..++...++.......++..+|+||+||
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~ 157 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKA 157 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHH
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHH
Confidence 00000000000000 000 11100 001112233466677778886543344678899999999
Q ss_pred -HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q psy10512 529 -VVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF 566 (629)
Q Consensus 529 -v~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~ 566 (629)
+..+++++.+|.++++|||||++|..+++.+.+.|.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 158 QLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999988764
No 183
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.64 E-value=3.2e-17 Score=159.81 Aligned_cols=181 Identities=13% Similarity=0.137 Sum_probs=98.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCCCceEEEe---ecccCCCCCc
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE-----VPVPDHIDIFH---LTREMPASDK 158 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~-----~p~~g~i~i~~---~~~~~~~~~~ 158 (629)
.|+++|++|.|+ ..++++ |.+.+|.+++|+|+||||||||++.|+|.. .|++|...+.. ........+.
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 388999999997 467877 999999999999999999999999999987 67777654211 0000000000
Q ss_pred chhh--hhh-hc-hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCC
Q psy10512 159 SALT--CVM-EV-DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFS 234 (629)
Q Consensus 159 ~~~~--~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 234 (629)
.... ... .. ...+..+....+..... +.. .+...+. .........+..++...+++.-....++..+|
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSL-QGL------VVLMDIR-HPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTE-EEE------EEEEETT-SCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcc-cEE------EEEEECC-CCCchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence 0000 000 00 00000111111100000 000 0000000 00112233455667777876433355688899
Q ss_pred hHHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q psy10512 235 GGWRMR-IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY 278 (629)
Q Consensus 235 GGqrqR-v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~ 278 (629)
+||+|| +.++++++.+|.++++|||||+||..++..+++.|.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 152 SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 999999 89999999999999999999999999999999888654
No 184
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.63 E-value=3.7e-17 Score=172.77 Aligned_cols=145 Identities=16% Similarity=0.126 Sum_probs=96.6
Q ss_pred EEEEEEEcCCCCeEeeeeeE-------EEeCCCEEEEECCCCCchHHHHHHHHcCCCCC-ccEEEECCceeEEeeccchh
Q psy10512 403 QNVSFRYSDDGPWIYRNLEF-------GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS-VGMVRKNSHLRFARYHQHLH 474 (629)
Q Consensus 403 ~~l~~~y~~~~~~il~~vsl-------~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~~~~~~q~~~ 474 (629)
..++++|.+...+.|+++.+ .+.+|++++|+|||||||||||++|+|+++|+ .|.|...... +.+....
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~-~e~~~~~-- 168 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDP-IEFVHES-- 168 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCC--
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCc-HHhhhhc--
Confidence 56677764433345666665 67889999999999999999999999999997 5665432110 0000000
Q ss_pred cccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q psy10512 475 ELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554 (629)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~ 554 (629)
... + ... . ..+ ...++-.+ +||+||.++|++||||||| |.+
T Consensus 169 -----~~~---~----v~q--~---------~~~---------~~~~~~~~----~La~aL~~~PdvillDEp~---d~e 209 (356)
T 3jvv_A 169 -----KKC---L----VNQ--R---------EVH---------RDTLGFSE----ALRSALREDPDIILVGEMR---DLE 209 (356)
T ss_dssp -----SSS---E----EEE--E---------EBT---------TTBSCHHH----HHHHHTTSCCSEEEESCCC---SHH
T ss_pred -----ccc---c----eee--e---------eec---------cccCCHHH----HHHHHhhhCcCEEecCCCC---CHH
Confidence 000 0 000 0 000 01122222 9999999999999999999 888
Q ss_pred HHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEe
Q psy10512 555 TIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICE 591 (629)
Q Consensus 555 ~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~ 591 (629)
+.+.+.++.. .+.+||+++|+.+.+ ..|||++.|.
T Consensus 210 ~~~~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 210 TIRLALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp HHHHHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTS
T ss_pred HHHHHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhc
Confidence 8777776643 377899999999988 6788887663
No 185
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.62 E-value=1.5e-18 Score=179.90 Aligned_cols=163 Identities=20% Similarity=0.132 Sum_probs=72.0
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC-CCCCCCceEEEeecccCCCC-Ccchhhhhhhch
Q psy10512 91 ANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR-EVPVPDHIDIFHLTREMPAS-DKSALTCVMEVD 168 (629)
Q Consensus 91 ~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~-~~p~~g~i~i~~~~~~~~~~-~~~~~~~~~~~~ 168 (629)
.||+++|+++.++++++|+| +||||||+|||||+++|.|. ..|..| +.+.+. .+... .........+..
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~--~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAE--KIERTVQIEASTVEIEER 72 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC--
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCc--ccCCcceEeeEEEEecCC
Confidence 58899999999999999998 99999999999999999997 667666 433211 10000 000000000000
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHc
Q psy10512 169 EERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALY 248 (629)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 248 (629)
. ....+... ++... ...... .+.....+..+. +..++++.++|||+|||+.+|||++
T Consensus 73 ~-------~~~~ltv~--Dt~g~-----~~~~~~--~e~~~~l~~~l~-------~~~~~~~~~~sgg~rqrv~~ara~~ 129 (301)
T 2qnr_A 73 G-------VKLRLTVV--DTPGY-----GDAINC--RDCFKTIISYID-------EQFERYLHDESGLNRRHIIDNRVHC 129 (301)
T ss_dssp --------CCEEEEEE--EEC------------------CTTHHHHHH-------HHHHHHHHHHTSSCCTTCCCCCCCE
T ss_pred C-------cccCcchh--hhhhh-----hhhcCc--HHHHHHHHHHHH-------HHHHHHHHHhCHHhhhhhhhhhhhh
Confidence 0 00000000 00000 000000 000000111111 2335678899999999999999986
Q ss_pred cCCCEEEEeCCCCC-CCHHHHHHHHHHHhh-cCCEEEEEecCHH
Q psy10512 249 VKPHLLLLDEPTNH-LDLDACVWLEEELKT-YKRILVIISHSQD 290 (629)
Q Consensus 249 ~~P~iLLLDEPT~~-LD~~~~~~l~~~L~~-~~~tvIivsHd~~ 290 (629)
+|++||||++ ||+.... ++..+.. .+.++|+++||+.
T Consensus 130 ----ll~ldePt~~~Ld~~~~~-~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 ----CFYFISPFGHGLKPLDVA-FMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp ----EEEEECSSSSSCCHHHHH-HHHHHTTTSCEEEEECCGGGS
T ss_pred ----eeeeecCcccCCCHHHHH-HHHHHHhcCCEEEEEEeCCCC
Confidence 9999999986 9998853 3333433 3567888889973
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.62 E-value=5.2e-18 Score=175.75 Aligned_cols=156 Identities=18% Similarity=0.171 Sum_probs=74.1
Q ss_pred EEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcC-CCCCccEEEECCc--------eeEEeeccch
Q psy10512 403 QNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGD-LTPSVGMVRKNSH--------LRFARYHQHL 473 (629)
Q Consensus 403 ~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~-~~p~~G~i~~~~~--------~~~~~~~q~~ 473 (629)
+||++.|+. ..++++++|+| +|+||||||||||++.|+|. +.|++| |...+. ..+++..|..
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC--
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCC
Confidence 478899953 34899999998 99999999999999999998 889988 543321 1123333321
Q ss_pred hcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC-CC
Q psy10512 474 HELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH-LD 552 (629)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~-LD 552 (629)
. ....+++++........ ...+....++..+ .. ....++.++|||||||+.+||+++ +|++||||++ ||
T Consensus 73 ~--~~~~ltv~Dt~g~~~~~-~~~e~~~~l~~~l--~~-~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld 142 (301)
T 2qnr_A 73 G--VKLRLTVVDTPGYGDAI-NCRDCFKTIISYI--DE-QFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLK 142 (301)
T ss_dssp ---CCEEEEEEEEC------------CTTHHHHH--HH-HHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCC
T ss_pred C--cccCcchhhhhhhhhhc-CcHHHHHHHHHHH--HH-HHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCC
Confidence 1 11112222221110000 0000111111111 11 112456799999999999999886 9999999985 99
Q ss_pred HHHHHHHHHHHhh-cCceEEEEecCHH
Q psy10512 553 METIDALADAIND-FEGGLVLVSHDFR 578 (629)
Q Consensus 553 ~~~~~~l~~~l~~-~~~~vi~vsHd~~ 578 (629)
+...+ ++..+.. .+.++|+++||+.
T Consensus 143 ~~~~~-~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 143 PLDVA-FMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHH-HHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHH-HHHHHHhcCCEEEEEEeCCCC
Confidence 98853 3333333 2457888899973
No 187
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.61 E-value=7.8e-17 Score=170.26 Aligned_cols=144 Identities=17% Similarity=0.081 Sum_probs=94.7
Q ss_pred EeEEEEeC--CeeeeEeeeE-------EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC-CceEEEeecccCCCCCcch
Q psy10512 91 ANFSITFH--GCELLQDTML-------ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVP-DHIDIFHLTREMPASDKSA 160 (629)
Q Consensus 91 ~nls~~y~--~~~~L~~vsl-------~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~-g~i~i~~~~~~~~~~~~~~ 160 (629)
.+++++|- ..+.|+++.+ .+.+|++++|+|||||||||||++|+|++.|.. |.+.......+.......
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~- 170 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK- 170 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS-
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc-
Confidence 45555652 2234566665 677888999999999999999999999988763 444322111111000000
Q ss_pred hhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHH
Q psy10512 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqR 240 (629)
..+... .++ ...++-.+
T Consensus 171 -------------------------------------~~v~q~--------------~~~---------~~~~~~~~--- 187 (356)
T 3jvv_A 171 -------------------------------------CLVNQR--------------EVH---------RDTLGFSE--- 187 (356)
T ss_dssp -------------------------------------SEEEEE--------------EBT---------TTBSCHHH---
T ss_pred -------------------------------------cceeee--------------eec---------cccCCHHH---
Confidence 000000 000 00122222
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcC
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDK 304 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~ 304 (629)
+||+||.++|++||||||| |.++...+.+.. ..|.+||+++|+.+.+ .+|||++.|..
T Consensus 188 -~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l~~ 245 (356)
T 3jvv_A 188 -ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDVFP 245 (356)
T ss_dssp -HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHTSC
T ss_pred -HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhhcC
Confidence 9999999999999999999 888877766654 4488999999999988 68999998854
No 188
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.61 E-value=7.1e-16 Score=157.88 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=55.9
Q ss_pred HHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHH---HHHHHHHH----hhcCCEE
Q psy10512 212 AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTN--HLDLDA---CVWLEEEL----KTYKRIL 282 (629)
Q Consensus 212 ~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~--~LD~~~---~~~l~~~L----~~~~~tv 282 (629)
+..+++.+++. +..++++..||+|+.+++ ++++.+|++|||||||+ ++|... ...++..| ++.+.||
T Consensus 99 ~~~~~~~l~l~-~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv 174 (279)
T 1nlf_A 99 RQAVADGLLIQ-PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI 174 (279)
T ss_dssp HHHHHHHEEEC-CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred hhhccCceEEe-ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE
Confidence 44566777775 345778999999997765 68888999999999999 999743 24444444 4558999
Q ss_pred EEEecCHHHHH
Q psy10512 283 VIISHSQDFLN 293 (629)
Q Consensus 283 IivsHd~~~l~ 293 (629)
|+|+|+.....
T Consensus 175 i~i~H~~~~~~ 185 (279)
T 1nlf_A 175 VFLHHASKGAA 185 (279)
T ss_dssp EEEEEC-----
T ss_pred EEEecCCCccc
Confidence 99999987653
No 189
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.60 E-value=2.3e-16 Score=182.51 Aligned_cols=146 Identities=16% Similarity=0.122 Sum_probs=90.9
Q ss_pred eEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-CccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCC
Q psy10512 415 WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-SVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPE 493 (629)
Q Consensus 415 ~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 493 (629)
.+++|++|+ ++|++++|+||||||||||||+|+|+..+ ..|.........++++.|.
T Consensus 596 ~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i--------------------- 653 (800)
T 1wb9_A 596 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRI--------------------- 653 (800)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEE---------------------
T ss_pred eeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHH---------------------
Confidence 489999999 99999999999999999999999997432 2232110111112222221
Q ss_pred hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH----HHHHHhh-cCc
Q psy10512 494 VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA----LADAIND-FEG 568 (629)
Q Consensus 494 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~----l~~~l~~-~~~ 568 (629)
+..++..+... ...+.+|+|+++ ++.+...+.+|++|||||||+|+|+..... +++.+.+ .+.
T Consensus 654 ----------~~~~~~~d~l~-~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~ 721 (800)
T 1wb9_A 654 ----------FTRVGAADDLA-SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKA 721 (800)
T ss_dssp ----------EEEEC------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCC
T ss_pred ----------HhhCCHHHHHH-hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCC
Confidence 01111111111 123457777764 444555689999999999988888754433 4444555 367
Q ss_pred eEEEEecCHHHHHhhcCEEEEEeCCEE
Q psy10512 569 GLVLVSHDFRLINQVAEEIWICENGKV 595 (629)
Q Consensus 569 ~vi~vsHd~~~~~~~~d~i~~l~~G~i 595 (629)
++|++|||.+++ .+||++..+.+|++
T Consensus 722 ~vl~~TH~~el~-~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 722 LTLFATHYFELT-QLPEKMEGVANVHL 747 (800)
T ss_dssp EEEEECSCGGGG-GHHHHSTTEEEEEE
T ss_pred eEEEEeCCHHHH-HHhhhhhceEEEEE
Confidence 899999999876 48887655555443
No 190
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.59 E-value=2.2e-16 Score=182.69 Aligned_cols=150 Identities=17% Similarity=0.092 Sum_probs=92.5
Q ss_pred CCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHH
Q psy10512 98 HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-VPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEK 176 (629)
Q Consensus 98 ~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (629)
++..+++|++|+ ++|++++|+||||||||||||+|+|+..+ ..|. .++.. ...+
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~--------~vpa~-~~~i--------------- 647 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS--------YVPAQ-KVEI--------------- 647 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC--------CBSSS-EEEE---------------
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc--------ccchh-cccc---------------
Confidence 445689999999 99999999999999999999999986321 1111 00000 0000
Q ss_pred HHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEE
Q psy10512 177 LAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLL 256 (629)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLL 256 (629)
... + . ++..+|..+ ......+++|+++++ ++.+..++.+|++|||
T Consensus 648 -----~~~-~------------~---------------i~~~~~~~d-~l~~~~stf~~e~~~-~~~il~~a~~psLlLL 692 (800)
T 1wb9_A 648 -----GPI-D------------R---------------IFTRVGAAD-DLASGRSTFMVEMTE-TANILHNATEYSLVLM 692 (800)
T ss_dssp -----CCC-C------------E---------------EEEEEC------------CHHHHHH-HHHHHHHCCTTEEEEE
T ss_pred -----eeH-H------------H---------------HHhhCCHHH-HHHhhhhhhhHHHHH-HHHHHHhccCCCEEEE
Confidence 000 0 0 001111111 112224567877765 4444556899999999
Q ss_pred eCCCCCCCHHHHH----HHHHHHhh-cCCEEEEEecCHHHHHhhcceeEEEcCCeEE
Q psy10512 257 DEPTNHLDLDACV----WLEEELKT-YKRILVIISHSQDFLNGVCTNIIHLDKRKLK 308 (629)
Q Consensus 257 DEPT~~LD~~~~~----~l~~~L~~-~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~ 308 (629)
||||+|+|+.... .+.+.|.+ .+.++|++|||.++. .+||++..+.++++.
T Consensus 693 DEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~ 748 (800)
T 1wb9_A 693 DEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHLD 748 (800)
T ss_dssp ESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEE
T ss_pred ECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEEE
Confidence 9997777765433 34555555 488999999999876 489988767666554
No 191
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.57 E-value=5.4e-15 Score=144.96 Aligned_cols=76 Identities=18% Similarity=0.080 Sum_probs=57.4
Q ss_pred cCCCChHH--HHHHHHHHHHccC-CCEEEEeCCCCCCCHHH--------HHHH----HHHHhhcCCEEEEEecCHH----
Q psy10512 230 TKDFSGGW--RMRIALARALYVK-PHLLLLDEPTNHLDLDA--------CVWL----EEELKTYKRILVIISHSQD---- 290 (629)
Q Consensus 230 ~~~LSGGq--rqRv~LAraL~~~-P~iLLLDEPT~~LD~~~--------~~~l----~~~L~~~~~tvIivsHd~~---- 290 (629)
+..+|+++ +++++.+++++.+ |++||+||||+.||+.. ...+ .++.++.+.|||+++|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~ 161 (220)
T 2cvh_A 82 LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRT 161 (220)
T ss_dssp EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTT
T ss_pred EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCC
Confidence 34556664 5688888899986 99999999999999732 2333 3333455889999999865
Q ss_pred ---------HHHhhcceeEEEcCC
Q psy10512 291 ---------FLNGVCTNIIHLDKR 305 (629)
Q Consensus 291 ---------~l~~~~d~ii~l~~G 305 (629)
.+..+||.+++|+..
T Consensus 162 ~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 162 EMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CccccCCCcceeecCcEEEEEEEe
Confidence 678899999999754
No 192
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.57 E-value=2.4e-15 Score=167.29 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=70.3
Q ss_pred cccCCC-ChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcceeEEE
Q psy10512 228 KKTKDF-SGGWRMRIALARALYVKP--HLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIHL 302 (629)
Q Consensus 228 ~~~~~L-SGGqrqRv~LAraL~~~P--~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~~d~ii~l 302 (629)
+++..| ||||+|||+||+||+.+| ++|||||||+|||+.+...+.+.|+++ +.|||+||||++++. +||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 467788 999999999999999999 999999999999999999999988765 689999999999876 69999999
Q ss_pred cCC
Q psy10512 303 DKR 305 (629)
Q Consensus 303 ~~G 305 (629)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 655
No 193
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.57 E-value=2.9e-15 Score=153.30 Aligned_cols=143 Identities=15% Similarity=0.053 Sum_probs=92.1
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC----ceeEEeeccchhcccCCCCCHHH---HHh-hcCCCh
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS----HLRFARYHQHLHELLDLDISPLD---YML-QSFPEV 494 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----~~~~~~~~q~~~~~~~~~~~~~~---~~~-~~~~~~ 494 (629)
.+.+|++++|+||||||||||++.|++.+. .|.+.... ...+.|+... .+... .+. ....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e--------~~~~~~~~r~~~~g~~-- 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAE--------DPPTAIHHRLHALGAH-- 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESS--------SCHHHHHHHHHHHHTT--
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECC--------CCHHHHHHHHHHHHhh--
Confidence 478999999999999999999999998664 34432210 1123333211 11111 111 1111
Q ss_pred hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHHH---HHHHHHHh----h
Q psy10512 495 KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN--HLDMETI---DALADAIN----D 565 (629)
Q Consensus 495 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~--~LD~~~~---~~l~~~l~----~ 565 (629)
........+++.+++.... ..++..||+||.+++ ++++.+|++||+||||+ ++|.... ..++..|. +
T Consensus 94 ~~~~~~~~~~~~l~l~~~~-~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~ 169 (279)
T 1nlf_A 94 LSAEERQAVADGLLIQPLI-GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD 169 (279)
T ss_dssp SCHHHHHHHHHHEEECCCT-TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred cChhhhhhccCceEEeecC-CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHH
Confidence 1233456678888886543 456789999997765 57888999999999999 9997433 55555554 3
Q ss_pred cCceEEEEecCHHHHH
Q psy10512 566 FEGGLVLVSHDFRLIN 581 (629)
Q Consensus 566 ~~~~vi~vsHd~~~~~ 581 (629)
.+.+||++||+.....
T Consensus 170 ~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 170 TGCSIVFLHHASKGAA 185 (279)
T ss_dssp HCCEEEEEEEC-----
T ss_pred cCCEEEEEecCCCccc
Confidence 4679999999987763
No 194
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.56 E-value=1.2e-14 Score=142.55 Aligned_cols=147 Identities=14% Similarity=0.073 Sum_probs=92.8
Q ss_pred EeeeeeE-EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCCh
Q psy10512 416 IYRNLEF-GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEV 494 (629)
Q Consensus 416 il~~vsl-~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 494 (629)
.|+.+.. .+++|++++|+||||||||||++.|++ .+ .+.+. |+... ...+..
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~~~v~--------~i~~~------~~~~~~---------- 60 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-GKKVA--------YVDTE------GGFSPE---------- 60 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-CSEEE--------EEESS------CCCCHH----------
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-CCcEE--------EEECC------CCCCHH----------
Confidence 4566554 689999999999999999999999999 22 22222 22111 001111
Q ss_pred hhHHHHHHHHHHcCCCCc--ccccCcCcCChhH--HHHHHHHHHHccC-CCEEEEeCCCCCCCHHH--------HHHHHH
Q psy10512 495 KDREEMRKIIGRYGLTGR--QQVCPIRQLSDGQ--KCRVVFAYLAWQA-PHLLLLDEPTNHLDMET--------IDALAD 561 (629)
Q Consensus 495 ~~~~~~~~~l~~~gl~~~--~~~~~~~~LSgGq--kqrv~lAral~~~-p~lLlLDEPT~~LD~~~--------~~~l~~ 561 (629)
++..++..+++... .....+..+|+++ ++++..+++++.+ |++||+||||+.+|... ...+.+
T Consensus 61 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~ 136 (220)
T 2cvh_A 61 ----RLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQ 136 (220)
T ss_dssp ----HHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHH
T ss_pred ----HHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHH
Confidence 11111222222100 0001223456664 5678888899986 99999999999999732 233333
Q ss_pred HH----hhcCceEEEEecCHH-------------HHHhhcCEEEEEeCC
Q psy10512 562 AI----NDFEGGLVLVSHDFR-------------LINQVAEEIWICENG 593 (629)
Q Consensus 562 ~l----~~~~~~vi~vsHd~~-------------~~~~~~d~i~~l~~G 593 (629)
.| ++.+.+||+++|... .+..+||.+++|+..
T Consensus 137 ~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 137 VLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 33 445778999999865 677899999999754
No 195
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.55 E-value=7e-18 Score=165.16 Aligned_cols=145 Identities=19% Similarity=0.081 Sum_probs=94.4
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChhH
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDES 189 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (629)
.++|+++||+||||||||||+++|+|++.| .+.+ ..++........ ... .. .....
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~--v~~d~~~~~~~~------~~~-~~-------~~~~~----- 58 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---RVAL--LPMDHYYKDLGH------LPL-EE-------RLRVN----- 58 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEE--EEGGGCBCCCTT------SCH-HH-------HHHSC-----
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEE--EecCccccCccc------ccH-HH-------hcCCC-----
Confidence 578999999999999999999999998654 2322 222211110000 000 00 00000
Q ss_pred HHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHH----HHHHHHHHHHccCCCEEEEeCCCCC---
Q psy10512 190 QEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGW----RMRIALARALYVKPHLLLLDEPTNH--- 262 (629)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq----rqRv~LAraL~~~P~iLLLDEPT~~--- 262 (629)
+. ........++.++++.+++.. ..++++.++|+|+ +||+++|++++.+|.+|++||||++
T Consensus 59 -------~~----~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d 126 (211)
T 3asz_A 59 -------YD----HPDAFDLALYLEHAQALLRGL-PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMD 126 (211)
T ss_dssp -------TT----SGGGBCHHHHHHHHHHHHTTC-CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCS
T ss_pred -------CC----ChhhhhHHHHHHHHHHHHcCC-CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcC
Confidence 00 000111234556666666653 3566789999996 4788999999999999999999999
Q ss_pred ----CCHHHHHHHHHHHhh----cCCEEEEEecCHH
Q psy10512 263 ----LDLDACVWLEEELKT----YKRILVIISHSQD 290 (629)
Q Consensus 263 ----LD~~~~~~l~~~L~~----~~~tvIivsHd~~ 290 (629)
||+.....+.+.+.+ .+.|+++++|+..
T Consensus 127 ~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 127 LKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 899888777776654 3789999999853
No 196
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.54 E-value=5.1e-16 Score=160.65 Aligned_cols=139 Identities=14% Similarity=0.006 Sum_probs=83.3
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------------eEEeeccchhcccCCCCCHHHHHh
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------------RFARYHQHLHELLDLDISPLDYML 488 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------------~~~~~~q~~~~~~~~~~~~~~~~~ 488 (629)
+|++++|+||||||||||+++|+|+++|++|+|.+.+.. .+++++|... .....++.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~--~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG--TDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT--CCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC--CCHHHHHHHHHH
Confidence 689999999999999999999999999999999886531 1233333221 011111122211
Q ss_pred hcCCChhhHHHHH-HHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 489 QSFPEVKDREEMR-KIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH--LLLLDEPTNHLDMETIDALADAIND 565 (629)
Q Consensus 489 ~~~~~~~~~~~~~-~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPT~~LD~~~~~~l~~~l~~ 565 (629)
... ..... .+++..|..+. ....++..++||++|||+++.+|+ +|.|| |+++.+.. ..+...-..
T Consensus 179 ~~~-----~~~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~--~~~~~~~~~ 246 (304)
T 1rj9_A 179 AMK-----ARGYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL--EQAKKFHEA 246 (304)
T ss_dssp HHH-----HHTCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH--HHHHHHHHH
T ss_pred HHH-----hCCCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH--HHHHHHHHH
Confidence 000 00000 01122233221 112345555899999999999999 67777 66665432 233333334
Q ss_pred cCceEEEEecCHH
Q psy10512 566 FEGGLVLVSHDFR 578 (629)
Q Consensus 566 ~~~~vi~vsHd~~ 578 (629)
.+.++|++||+..
T Consensus 247 ~~~t~iivTh~d~ 259 (304)
T 1rj9_A 247 VGLTGVIVTKLDG 259 (304)
T ss_dssp HCCSEEEEECTTS
T ss_pred cCCcEEEEECCcc
Confidence 5789999999853
No 197
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.53 E-value=2.2e-16 Score=178.52 Aligned_cols=170 Identities=16% Similarity=0.253 Sum_probs=88.4
Q ss_pred CeEEEEEEEEEEcCCCCeEeeee----------eEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC-CccEEEECCce--
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNL----------EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP-SVGMVRKNSHL-- 464 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~v----------sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~~~-- 464 (629)
+.+.++||++.|+.....+++.+ +|+++. +||+|||||||||||++|+|+..| ++|.|.+.+..
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 46789999999963221234333 355553 999999999999999999999989 79999877632
Q ss_pred ------------eEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHH
Q psy10512 465 ------------RFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA 532 (629)
Q Consensus 465 ------------~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lA 532 (629)
.++|++|... +....++. +.+......++.... .+| ++++.++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~-------------e~i~~~~~~~~~~~~-------~~s---~~~i~l~ 140 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIE--ISDASEVE-------------KEINKAQNAIAGEGM-------GIS---HELITLE 140 (608)
T ss_dssp EEECSSSSCCEEEESCC---CC--CCCHHHHH-------------TTHHHHHHHHHCSSS-------CCC---SCCEEEE
T ss_pred EecCCccccceeEEeeeccccc--CCCHHHHH-------------HHHHHHHHHhcCCcc-------ccc---hHHHHHH
Confidence 2333333321 11111111 112222222222111 011 1122233
Q ss_pred HHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHhhc-----CceEEEEecCHHHH--------Hhh----cCEEEE
Q psy10512 533 YLAWQAPHLLLLDEP------TNHLDMETIDALADAINDF-----EGGLVLVSHDFRLI--------NQV----AEEIWI 589 (629)
Q Consensus 533 ral~~~p~lLlLDEP------T~~LD~~~~~~l~~~l~~~-----~~~vi~vsHd~~~~--------~~~----~d~i~~ 589 (629)
.+....|+++|+||| |++||+.....+.+++.++ ..+++++|||.+.+ ..+ +..|.|
T Consensus 141 i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~V 220 (608)
T 3szr_A 141 ISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGI 220 (608)
T ss_dssp EEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEE
T ss_pred hcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEE
Confidence 334458999999999 9999999999999999885 23578899997633 333 245777
Q ss_pred EeCCEE
Q psy10512 590 CENGKV 595 (629)
Q Consensus 590 l~~G~i 595 (629)
+.++.+
T Consensus 221 lTK~Dl 226 (608)
T 3szr_A 221 LTKPDL 226 (608)
T ss_dssp EECGGG
T ss_pred ecchhh
Confidence 776543
No 198
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.52 E-value=4.8e-15 Score=156.52 Aligned_cols=158 Identities=16% Similarity=0.100 Sum_probs=88.1
Q ss_pred eeeEee-eEEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCC----Cc-eEEEeecccCCCCCcchhhhhhhchHHHH
Q psy10512 101 ELLQDT-MLELNCGRRYGLLGLNGSGKSTLLAVLGNRE--VPVP----DH-IDIFHLTREMPASDKSALTCVMEVDEERV 172 (629)
Q Consensus 101 ~~L~~v-sl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~--~p~~----g~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (629)
+.|+.+ ++.|++|++++|+||||||||||++.|++.. +|.. |. +.+.. .+. . . +.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~--e~~-~------------~--~~ 180 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT--ENT-F------------R--PE 180 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES--SSC-C------------C--HH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC--CCC-C------------C--HH
Confidence 456665 6899999999999999999999999999987 5555 33 33321 110 0 0 01
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHc----
Q psy10512 173 RLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALY---- 248 (629)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~---- 248 (629)
.+..+.+.... +.. . +++.+-+. . . .-|++++|++.++++++
T Consensus 181 ~i~~i~q~~~~--~~~------~-------------------v~~ni~~~----~-~--~~~~~~~~~l~~~~~~~~~lS 226 (349)
T 1pzn_A 181 RIREIAQNRGL--DPD------E-------------------VLKHIYVA----R-A--FNSNHQMLLVQQAEDKIKELL 226 (349)
T ss_dssp HHHHHHHTTTC--CHH------H-------------------HGGGEEEE----E-C--CSHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCC--CHH------H-------------------HhhCEEEE----e-c--CChHHHHHHHHHHHHHHHHhc
Confidence 11111111100 000 1 11111110 0 0 11467788888888887
Q ss_pred ---cCCCEEEEeCCCCCCCHHH------------HHHHHHHH----hhcCCEEEEEecCHHHHHhhcceeEEEcCCeEEE
Q psy10512 249 ---VKPHLLLLDEPTNHLDLDA------------CVWLEEEL----KTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKY 309 (629)
Q Consensus 249 ---~~P~iLLLDEPT~~LD~~~------------~~~l~~~L----~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~i~~ 309 (629)
.+|++||+||||++||+.. ...+...| ++++.|||+++|+......+++..+....|++..
T Consensus 227 ~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~ 306 (349)
T 1pzn_A 227 NTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILA 306 (349)
T ss_dssp SSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCC
T ss_pred cccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEe
Confidence 6899999999999999852 23444333 3458899999999876655445555666666553
No 199
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.51 E-value=5.4e-15 Score=156.15 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=88.9
Q ss_pred Eeeee-eEEEeCCCEEEEECCCCCchHHHHHHHHcCC--CCCc----cE-EEECCceeEEeeccchhcccCCCCCHHHHH
Q psy10512 416 IYRNL-EFGIDLDTRLALVGPNGAGKSTLLNLIYGDL--TPSV----GM-VRKNSHLRFARYHQHLHELLDLDISPLDYM 487 (629)
Q Consensus 416 il~~v-sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~--~p~~----G~-i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 487 (629)
.|+.+ ++.|++|++++|+||||||||||++.|++.. +|+. |. |++++...+ .++. +.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~-----------i~~i 185 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPER-----------IREI 185 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHH-----------HHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHH-----------HHHH
Confidence 35555 6889999999999999999999999999998 7776 46 555432110 0000 0111
Q ss_pred hhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc-------cCCCEEEEeCCCCCCCHHH-----
Q psy10512 488 LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW-------QAPHLLLLDEPTNHLDMET----- 555 (629)
Q Consensus 488 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~-------~~p~lLlLDEPT~~LD~~~----- 555 (629)
...+.- . .. .+++.+-+. .. .-|+++.|++.++++++ .+|++||+||||++||+..
T Consensus 186 ~q~~~~-~-~~---~v~~ni~~~-----~~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~ 253 (349)
T 1pzn_A 186 AQNRGL-D-PD---EVLKHIYVA-----RA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGA 253 (349)
T ss_dssp HHTTTC-C-HH---HHGGGEEEE-----EC--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTT
T ss_pred HHHcCC-C-HH---HHhhCEEEE-----ec--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccccc
Confidence 111100 0 01 222222110 01 12578889999998888 6899999999999999862
Q ss_pred -------HHHHHHHHh----hcCceEEEEecCHHHHHhhcCEEEEEeCCE
Q psy10512 556 -------IDALADAIN----DFEGGLVLVSHDFRLINQVAEEIWICENGK 594 (629)
Q Consensus 556 -------~~~l~~~l~----~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~ 594 (629)
...++..|. +++.+||+++|+...+..+++...+...|+
T Consensus 254 ~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~ 303 (349)
T 1pzn_A 254 LAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGH 303 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcc
Confidence 334444443 347799999998776544333333444444
No 200
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.49 E-value=1.6e-15 Score=163.19 Aligned_cols=159 Identities=14% Similarity=0.099 Sum_probs=87.9
Q ss_pred CeEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccE--EEECC-----ceeEEeec
Q psy10512 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM--VRKNS-----HLRFARYH 470 (629)
Q Consensus 398 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~--i~~~~-----~~~~~~~~ 470 (629)
.+|.++||++.|+. . .+++++||+| +|+|+||||||||+++|+|...|..|. +.... ...++++.
T Consensus 10 ~~l~~~~l~~~y~~-~-~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 10 GYVGFANLPNQVYR-K-SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp -----CCCCCCTTT-T-TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-
T ss_pred CcEEEEecceeECC-E-EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEE
Confidence 46899999999963 3 4899999997 999999999999999999998865541 11111 11244444
Q ss_pred cchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC---EEEEeCC
Q psy10512 471 QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH---LLLLDEP 547 (629)
Q Consensus 471 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~---lLlLDEP 547 (629)
|... ....+++++........ ........+.+.+ . ..++.+++||++|||+++.+|+ +|++|||
T Consensus 82 q~~~--~~~~Ltv~Dt~g~~~~~-~~~~~~~~i~~~i------~----~~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP 148 (418)
T 2qag_C 82 KEGG--VQLLLTIVDTPGFGDAV-DNSNCWQPVIDYI------D----SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148 (418)
T ss_dssp -------CEEEEEEECC------------CHHHHHHH------H----HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred ecCC--cccceeeeechhhhhhc-cchhhHHHHHHHH------H----HHHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence 4321 11122222221111000 0000011111111 0 1456677889999999999999 9999999
Q ss_pred C-CCCCHHHHHHHHHHHhhcCceEEEEecCHHH
Q psy10512 548 T-NHLDMETIDALADAINDFEGGLVLVSHDFRL 579 (629)
Q Consensus 548 T-~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~ 579 (629)
| ++||+.....+ +.|.. +..||+|.|-.+.
T Consensus 149 t~~~L~~~d~~~l-k~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 149 SGHGLKPLDIEFM-KRLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp -CCSCCHHHHHHH-HHHTT-TSEEEEEEESTTS
T ss_pred cccCCCHHHHHHH-HHHhc-cCcEEEEEEcccC
Confidence 9 69999875443 44443 5677777775543
No 201
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.49 E-value=4.2e-15 Score=159.96 Aligned_cols=162 Identities=14% Similarity=0.109 Sum_probs=86.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCc--eEEEeecccCCCCCcchhhhh
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH--IDIFHLTREMPASDKSALTCV 164 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~--i~i~~~~~~~~~~~~~~~~~~ 164 (629)
.|.++||+++|+++.+++++||+| +||||||||||||+++|+|...|.+|. +.+... .......+..+
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~----~t~~~~~i~~v 80 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIK----KTVQVEQSKVL 80 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC---------CCEEEEEECC
T ss_pred cEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCc----cceeeeeEEEE
Confidence 589999999999999999999998 999999999999999999998765542 111000 00000000000
Q ss_pred hhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHH
Q psy10512 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244 (629)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LA 244 (629)
.+.. . ....+....... . .... ........+.+.+. ..++.+.+||++||
T Consensus 81 ~q~~----~---~~~~Ltv~Dt~g-~------~~~~---~~~~~~~~i~~~i~-------------~~~~~~l~qr~~Ia 130 (418)
T 2qag_C 81 IKEG----G---VQLLLTIVDTPG-F------GDAV---DNSNCWQPVIDYID-------------SKFEDYLNAESRVN 130 (418)
T ss_dssp -------------CEEEEEEECC---------------------CHHHHHHHH-------------HHHHHHTTTSCC-C
T ss_pred EecC----C---cccceeeeechh-h------hhhc---cchhhHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 0000 0 000000000000 0 0000 00000011111111 13455677899999
Q ss_pred HHHccCCC---EEEEeCCC-CCCCHHHHHHHHHHHhhcCCEEEEEecCHH
Q psy10512 245 RALYVKPH---LLLLDEPT-NHLDLDACVWLEEELKTYKRILVIISHSQD 290 (629)
Q Consensus 245 raL~~~P~---iLLLDEPT-~~LD~~~~~~l~~~L~~~~~tvIivsHd~~ 290 (629)
|+++.+|+ ||++|||| ++||+....++. .|.. +.+||+|.|..+
T Consensus 131 Ral~~d~~~~vlL~ldePt~~~L~~~d~~~lk-~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 131 RRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMK-RLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp CCCCCCC-CCEEEEECCC-CCSCCHHHHHHHH-HHTT-TSEEEEEEESTT
T ss_pred HHhccCCCeeEEEEEecCcccCCCHHHHHHHH-HHhc-cCcEEEEEEccc
Confidence 99999999 99999999 699998865554 4444 678888887644
No 202
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.49 E-value=6.7e-15 Score=152.27 Aligned_cols=156 Identities=17% Similarity=0.120 Sum_probs=82.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHH
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQE 191 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (629)
+|++++|+||||||||||+++|+|++.|..|.+.+...+ +.... .. .....+.. ...+...+......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D--~~r~~--a~-------~ql~~~~~-~~~i~~v~q~~~~~ 168 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD--TFRAA--GG-------TQLSEWGK-RLSIPVIQGPEGTD 168 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC--CSSTT--TT-------HHHHHHHH-HHTCCEECCCTTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeec--CCChh--HH-------HHHHHHHH-hcCceEEEeCCCCC
Confidence 699999999999999999999999999999988775432 11100 00 00000000 00111111100000
Q ss_pred HHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHH
Q psy10512 192 QLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH--LLLLDEPTNHLDLDACV 269 (629)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--iLLLDEPT~~LD~~~~~ 269 (629)
....+++.+.. .........+++..|... ...+.+.+ ..+||++|||||+.+|+ +|.|| |+++.+.. .
T Consensus 169 p~~~v~~~v~~---~~~~~~d~~llDt~G~~~-~~~~~~~e---Ls~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~--~ 238 (304)
T 1rj9_A 169 SAALAYDAVQA---MKARGYDLLFVDTAGRLH-TKHNLMEE---LKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL--E 238 (304)
T ss_dssp HHHHHHHHHHH---HHHHTCSEEEECCCCCCT-TCHHHHHH---HHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH--H
T ss_pred HHHHHHHHHHH---HHhCCCCEEEecCCCCCC-chHHHHHH---HHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH--H
Confidence 00011111000 000000001233345432 22233344 45899999999999999 67777 66665533 2
Q ss_pred HHHHHHhhcCCEEEEEecCH
Q psy10512 270 WLEEELKTYKRILVIISHSQ 289 (629)
Q Consensus 270 ~l~~~L~~~~~tvIivsHd~ 289 (629)
.+..+-...+.|+|++||+.
T Consensus 239 ~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 239 QAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHcCCcEEEEECCc
Confidence 33333345588999999984
No 203
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.48 E-value=9.8e-14 Score=147.89 Aligned_cols=75 Identities=32% Similarity=0.472 Sum_probs=67.9
Q ss_pred cccCCCChHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHHhhcce
Q psy10512 228 KKTKDFSGGWRMRI------ALARALYVK-PHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVIISHSQDFLNGVCTN 298 (629)
Q Consensus 228 ~~~~~LSGGqrqRv------~LAraL~~~-P~iLLLDEPT~~LD~~~~~~l~~~L~~~~--~tvIivsHd~~~l~~~~d~ 298 (629)
+++..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|.++. .+||+|||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 567899999 99999999999999999999999998763 59999999987 5789999
Q ss_pred eEEEc
Q psy10512 299 IIHLD 303 (629)
Q Consensus 299 ii~l~ 303 (629)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 204
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.47 E-value=4.1e-15 Score=158.36 Aligned_cols=126 Identities=14% Similarity=0.130 Sum_probs=86.1
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCC-ccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCCh
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS-VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEV 494 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 494 (629)
+|++++ +.+|++++|+||||||||||+++|+|+++|+ +|.|...+.. +.+. ...... + .+.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~-~e~~-------~~~~~~---~----v~Q- 188 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYV-------FKHKKS---I----VNQ- 188 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS-CCSC-------CCCSSS---E----EEE-
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc-Hhhh-------hccCce---E----EEe-
Confidence 566665 7899999999999999999999999999998 8998653321 0000 000000 0 000
Q ss_pred hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEe
Q psy10512 495 KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVS 574 (629)
Q Consensus 495 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vs 574 (629)
. .+|+. +..| +.+|+++|..+|++||+|||| |+++...+.+.. ..+.+||.++
T Consensus 189 -~---------~~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~ 241 (372)
T 2ewv_A 189 -R---------EVGED-------TKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTL 241 (372)
T ss_dssp -E---------EBTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECC
T ss_pred -e---------ecCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEE
Confidence 0 13332 1344 469999999999999999999 888766655554 3366789999
Q ss_pred cCHHHHHhhcCEE
Q psy10512 575 HDFRLINQVAEEI 587 (629)
Q Consensus 575 Hd~~~~~~~~d~i 587 (629)
|+.+ +..+|||+
T Consensus 242 H~~~-~~~~~~rl 253 (372)
T 2ewv_A 242 HTNT-AIDTIHRI 253 (372)
T ss_dssp CCCS-HHHHHHHH
T ss_pred Ccch-HHHHHHHH
Confidence 9865 55566664
No 205
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.45 E-value=2.3e-13 Score=144.96 Aligned_cols=75 Identities=25% Similarity=0.356 Sum_probs=67.5
Q ss_pred cCcCcCChhHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--ceEEEEecCHHHHHhhcCE
Q psy10512 516 CPIRQLSDGQKCRV------VFAYLAWQA-PHLLLLDEPTNHLDMETIDALADAINDFE--GGLVLVSHDFRLINQVAEE 586 (629)
Q Consensus 516 ~~~~~LSgGqkqrv------~lAral~~~-p~lLlLDEPT~~LD~~~~~~l~~~l~~~~--~~vi~vsHd~~~~~~~~d~ 586 (629)
.++..|||||+||| ++|++++.+ |++|||||||++||+..+..+.+.|.++. .+||+||||.+ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 46789999999988 567888999 99999999999999999999999998873 48999999987 5689999
Q ss_pred EEEEe
Q psy10512 587 IWICE 591 (629)
Q Consensus 587 i~~l~ 591 (629)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 206
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.43 E-value=2.1e-14 Score=141.59 Aligned_cols=144 Identities=11% Similarity=0.162 Sum_probs=85.6
Q ss_pred eEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC--CccEEEECCce-------eEEeeccchhcccCCCCCHHHHHhhcC
Q psy10512 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP--SVGMVRKNSHL-------RFARYHQHLHELLDLDISPLDYMLQSF 491 (629)
Q Consensus 421 sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~~-------~~~~~~q~~~~~~~~~~~~~~~~~~~~ 491 (629)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.++. .++|++|..
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~------------------ 71 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNH------------------ 71 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCH------------------
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCH------------------
Confidence 346789999999999999999999999999986 67777654421 122222221
Q ss_pred CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEE
Q psy10512 492 PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLV 571 (629)
Q Consensus 492 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi 571 (629)
.........-.+..... ....+.|-.++. +..++..++++||| ||+.+...+.+.+. .+.+|+
T Consensus 72 ------~~f~~~~~~~~f~E~~~--~~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~ 134 (219)
T 1s96_A 72 ------DEFKEMISRDAFLEHAE--VFGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIF 134 (219)
T ss_dssp ------HHHHHHHHTTCEEEEEE--ETTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEE
T ss_pred ------HHHHHHHhcCHHHHHHH--HHhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEE
Confidence 11111111000000000 001111111222 34455678999999 99999999999887 367899
Q ss_pred EEecCHHHHHhhcCEEEEEeCCEEEEecCCHHHHHHHH
Q psy10512 572 LVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETL 609 (629)
Q Consensus 572 ~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 609 (629)
++|||++.+.. |+ +.+| .++.+++.+.+
T Consensus 135 i~th~~~~l~~---Rl--~~rG-----~~~~e~i~~rl 162 (219)
T 1s96_A 135 ILPPSKIELDR---RL--RGRG-----QDSEEVIAKRM 162 (219)
T ss_dssp EECSSHHHHHH---HH--HTTS-----CSCHHHHHHHH
T ss_pred EECCCHHHHHH---HH--HHcC-----CCCHHHHHHHH
Confidence 99999998865 32 4555 35666655444
No 207
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.42 E-value=2.6e-15 Score=159.77 Aligned_cols=163 Identities=13% Similarity=0.047 Sum_probs=97.3
Q ss_pred eEeeeEEEeC--CCEEEEECCCCCcHHHHHHHHhCCCCCCC----CceEEEee--cccCCCCCcchhhhhhhchHHHHHH
Q psy10512 103 LQDTMLELNC--GRRYGLLGLNGSGKSTLLAVLGNREVPVP----DHIDIFHL--TREMPASDKSALTCVMEVDEERVRL 174 (629)
Q Consensus 103 L~~vsl~i~~--Ge~~~liG~NGsGKSTLlk~L~g~~~p~~----g~i~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (629)
.+.|+++|.+ |++++|+||||||||||+++|+|++.|.. |.+.+... +.+.... .. +. ..+
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~-~~--------~~--~~I 226 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQ-YS--------DY--PQM 226 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSC-TT--------TH--HHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCC-hh--------HH--HHH
Confidence 5679999999 99999999999999999999999998877 66543210 0011000 00 00 011
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHc-cCCCE
Q psy10512 175 EKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALY-VKPHL 253 (629)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~-~~P~i 253 (629)
....+.. ......+.+.+.... . ...+..+..+|+|++++..+++++. .+|++
T Consensus 227 ~~~~q~~--------~~~~~t~~~nl~~~~----------------~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 280 (365)
T 1lw7_A 227 ALGHQRY--------IDYAVRHSHKIAFID----------------T--DFITTQAFCIQYEGKAHPFLDSMIKEYPFDV 280 (365)
T ss_dssp HHHHHHH--------HHHHHHHCSSEEEES----------------S--CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSE
T ss_pred HHHHHHH--------HHHHHhccCCEEEEe----------------C--CchHHHHHHHHHcCCCCHHHHHHHhhcCCCE
Confidence 1110000 000011111111111 0 1112223456677788888888875 69999
Q ss_pred EEEeC---CC------CCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcceeEEEc
Q psy10512 254 LLLDE---PT------NHLDLDACVWLEEELK----TYKRILVIISHSQDFLNGVCTNIIHLD 303 (629)
Q Consensus 254 LLLDE---PT------~~LD~~~~~~l~~~L~----~~~~tvIivsHd~~~l~~~~d~ii~l~ 303 (629)
+|||| |+ .++|+..+..+.+.|. +.+.+||+++|. ....++|+++.+|+
T Consensus 281 llLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 281 TILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp EEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred EEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 99999 65 5899988888888773 337899999986 56667777776664
No 208
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.42 E-value=3.3e-14 Score=151.33 Aligned_cols=130 Identities=20% Similarity=0.130 Sum_probs=88.7
Q ss_pred eeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHH
Q psy10512 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV-PDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQ 180 (629)
Q Consensus 102 ~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (629)
+|++++ +++|++++|+||||||||||+++|+|++.|. .|.|.+.....++.. ...
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~--~~~-------------------- 182 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF--KHK-------------------- 182 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCC--CCS--------------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhh--ccC--------------------
Confidence 344444 7899999999999999999999999998886 687755332111000 000
Q ss_pred HhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q psy10512 181 LVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260 (629)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT 260 (629)
...+... .+|+. +..| +.+|+++|..+|++||+||||
T Consensus 183 -------------------~~~v~Q~-----------~~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~ 219 (372)
T 2ewv_A 183 -------------------KSIVNQR-----------EVGED-------TKSF------ADALRAALREDPDVIFVGEMR 219 (372)
T ss_dssp -------------------SSEEEEE-----------EBTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC
T ss_pred -------------------ceEEEee-----------ecCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC
Confidence 0000000 12331 2345 469999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEc
Q psy10512 261 NHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLD 303 (629)
Q Consensus 261 ~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~ 303 (629)
|+++...+.+.. ..+.++|.++|+.+ +..+|||++.|.
T Consensus 220 ---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 220 ---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIF 257 (372)
T ss_dssp ---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHHTS
T ss_pred ---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHHHHHhc
Confidence 888766555443 34789999999966 777889887653
No 209
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.42 E-value=8.3e-13 Score=131.36 Aligned_cols=142 Identities=16% Similarity=0.263 Sum_probs=78.9
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHc--CCCC-----CccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChh
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYG--DLTP-----SVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G--~~~p-----~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 495 (629)
.|++|++++|+||||||||||++.|++ +.+| ..|.+++.+.. ....
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~---------------~~~~------------ 72 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG---------------TFRP------------ 72 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CCCH------------
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC---------------CcCH------------
Confidence 488999999999999999999999999 5665 34444443211 0011
Q ss_pred hHHHHHHHHHHcCCCCc---ccccCcCcCChhHHHH-HHHHHHHc--cCCCEEEEeCCCCCCCHH-------H-----HH
Q psy10512 496 DREEMRKIIGRYGLTGR---QQVCPIRQLSDGQKCR-VVFAYLAW--QAPHLLLLDEPTNHLDME-------T-----ID 557 (629)
Q Consensus 496 ~~~~~~~~l~~~gl~~~---~~~~~~~~LSgGqkqr-v~lAral~--~~p~lLlLDEPT~~LD~~-------~-----~~ 557 (629)
.++..++..+|+... ..-.....++..+... +.-+..++ .+|++|++||||+.+|.. + ..
T Consensus 73 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~ 150 (243)
T 1n0w_A 73 --ERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLA 150 (243)
T ss_dssp --HHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHH
T ss_pred --HHHHHHHHHcCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHH
Confidence 011111122222110 0000112345555433 22232333 589999999999999975 2 23
Q ss_pred HHHHHHh----hcCceEEEEecCHHHHHh-------------------hcCEEEEEeCC
Q psy10512 558 ALADAIN----DFEGGLVLVSHDFRLINQ-------------------VAEEIWICENG 593 (629)
Q Consensus 558 ~l~~~l~----~~~~~vi~vsHd~~~~~~-------------------~~d~i~~l~~G 593 (629)
.+...|. +.+.+||+++|....... +||.+++|+.+
T Consensus 151 ~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 151 RFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3333333 347799999997665433 89999999864
No 210
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.41 E-value=1.4e-15 Score=171.97 Aligned_cols=160 Identities=20% Similarity=0.264 Sum_probs=79.6
Q ss_pred eEEEEeEEEEeCC--eeeeEee----------eEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCCceEEEeecccC
Q psy10512 87 DVKIANFSITFHG--CELLQDT----------MLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-VPDHIDIFHLTREM 153 (629)
Q Consensus 87 ~i~i~nls~~y~~--~~~L~~v----------sl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p-~~g~i~i~~~~~~~ 153 (629)
.+.++||++.|+. +++|+.+ +|+++. +||||||||||||||++|+|+..| ++|.+.+.+.....
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 4788999999975 3355444 366664 999999999999999999999888 68888665432110
Q ss_pred ---C-C-CCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhc
Q psy10512 154 ---P-A-SDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQK 228 (629)
Q Consensus 154 ---~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~ 228 (629)
. . .....+.++. +.. .+.+..+ +.+.+. .+...+...+
T Consensus 87 ~~~~~~~~~~~~i~~v~-------------Q~~-~l~~~~t------v~e~i~---------~~~~~~~~~~-------- 129 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQD-------------YEI-EISDASE------VEKEIN---------KAQNAIAGEG-------- 129 (608)
T ss_dssp EECSSSSCCEEEESCC----------------C-CCCCHHH------HHTTHH---------HHHHHHHCSS--------
T ss_pred ecCCccccceeEEeeec-------------ccc-cCCCHHH------HHHHHH---------HHHHHhcCCc--------
Confidence 0 0 0001111100 000 0111111 111110 0001111100
Q ss_pred ccCCCChHHHHHHHHHHHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHhhc-----CCEEEEEecCHHH
Q psy10512 229 KTKDFSGGWRMRIALARALYVKPHLLLLDEP------TNHLDLDACVWLEEELKTY-----KRILVIISHSQDF 291 (629)
Q Consensus 229 ~~~~LSGGqrqRv~LAraL~~~P~iLLLDEP------T~~LD~~~~~~l~~~L~~~-----~~tvIivsHd~~~ 291 (629)
..+| ++++.++.+....|+++|+||| |++||+.....+.+.+.++ +.++++++||.+.
T Consensus 130 --~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 130 --MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp --SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred --cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence 0111 1223333444568999999999 9999999999988888775 4688999999763
No 211
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.41 E-value=4.6e-15 Score=157.45 Aligned_cols=155 Identities=13% Similarity=0.145 Sum_probs=100.9
Q ss_pred EEEEEEEE---EcCCCCeEe---------eeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEe
Q psy10512 401 MVQNVSFR---YSDDGPWIY---------RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFAR 468 (629)
Q Consensus 401 ~~~~l~~~---y~~~~~~il---------~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~ 468 (629)
++++++|. |++....+| +++||.|++|++++|+||||||||||+++|+|+++|++|.|.+++...+.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~- 215 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELF- 215 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCC-
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccC-
Confidence 67778877 742111244 99999999999999999999999999999999999999999987531100
Q ss_pred eccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy10512 469 YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT 548 (629)
.... . . .+...+.. .+...++++..++..|+.++...|+.+++|||+
T Consensus 216 ~~~~-~-------~---~v~~v~~q----------------------~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r 262 (361)
T 2gza_A 216 LPDH-P-------N---HVHLFYPS----------------------EAKEEENAPVTAATLLRSCLRMKPTRILLAELR 262 (361)
T ss_dssp CTTC-S-------S---EEEEECC--------------------------------CCHHHHHHHHTTSCCSEEEESCCC
T ss_pred cccc-C-------C---EEEEeecC----------------------ccccccccccCHHHHHHHHHhcCCCEEEEcCch
Confidence 0000 0 0 00000000 000012455568889999999999999999998
Q ss_pred CCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCEEEEEeCCE
Q psy10512 549 NHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGK 594 (629)
Q Consensus 549 ~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~~G~ 594 (629)
. .+.. .+++.+..-..+++.++|+.. +...++|+..+..+.
T Consensus 263 ~---~~~~-~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 263 G---GEAY-DFINVAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp S---THHH-HHHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred H---HHHH-HHHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 6 2222 233333332346888999965 667788888877653
No 212
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.40 E-value=1e-12 Score=130.64 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=36.6
Q ss_pred cCCCEEEEeCCCCCCCHH-------H-----HHHHHHHH----hhcCCEEEEEecCHHHHHh------------------
Q psy10512 249 VKPHLLLLDEPTNHLDLD-------A-----CVWLEEEL----KTYKRILVIISHSQDFLNG------------------ 294 (629)
Q Consensus 249 ~~P~iLLLDEPT~~LD~~-------~-----~~~l~~~L----~~~~~tvIivsHd~~~l~~------------------ 294 (629)
.+|++|++||||+.+|+. + ...+...| ++.+.|||+++|.......
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 589999999999999975 2 22333333 3458999999997665443
Q ss_pred -hcceeEEEcCC
Q psy10512 295 -VCTNIIHLDKR 305 (629)
Q Consensus 295 -~~d~ii~l~~G 305 (629)
+||.+++|+.+
T Consensus 198 ~~~d~vi~l~~~ 209 (243)
T 1n0w_A 198 HASTTRLYLRKG 209 (243)
T ss_dssp CTTCEEEEEEEC
T ss_pred hcCcEEEEEEEc
Confidence 89999999865
No 213
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.37 E-value=6.4e-14 Score=140.55 Aligned_cols=141 Identities=21% Similarity=0.230 Sum_probs=81.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---CCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChh
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLG---NREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDE 188 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~---g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (629)
.+++++|+||||||||||+++|+ |+..|+.|.+.+..... . . .....+....+. ....+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~----~--~---------~~~~~i~~~~~~-~~~~~~~ 89 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKA----S--T---------EVGEMAKQYIEK-SLLVPDH 89 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHT----T--C---------HHHHHHHHHHHT-TCCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhc----C--C---------hHHHHHHHHHHc-CCCCCHH
Confidence 47999999999999999999999 98877766653321100 0 0 000111111111 1111222
Q ss_pred HHHHHH-HHHhh-------hhccChhhHHHHHHHHHH--hCC------------CCchhhhcccCCCChHHHHHHHHHHH
Q psy10512 189 SQEQLM-DIYDR-------LDDISADTAEARAANILH--GLG------------FTKEMQQKKTKDFSGGWRMRIALARA 246 (629)
Q Consensus 189 ~~~~~~-~~~~~-------l~~~~~~~~~~~~~~~L~--~lg------------l~~~~~~~~~~~LSGGqrqRv~LAra 246 (629)
+...+. ..... +....... ..+..+.. .++ + ....++.+..||| |+ +|
T Consensus 90 ~v~~~l~~~l~~~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l-~r~~~r~~~~lSg----rv---~a 159 (246)
T 2bbw_A 90 VITRLMMSELENRRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLK-DRLSRRWIHPPSG----RV---YN 159 (246)
T ss_dssp HHHHHHHHHHHTCTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHH-HHHHTEEEETTTT----EE---EE
T ss_pred HHHHHHHHHHHhcCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHH-HHHHcCCCcCCCC----Cc---cc
Confidence 222211 11100 11121111 22333322 233 2 2345778899999 66 77
Q ss_pred H-ccCCCEEEEe----CCCCCCCHHHHHHHHHHHhhc
Q psy10512 247 L-YVKPHLLLLD----EPTNHLDLDACVWLEEELKTY 278 (629)
Q Consensus 247 L-~~~P~iLLLD----EPT~~LD~~~~~~l~~~L~~~ 278 (629)
| +.+|++++|| |||++||+.+...+.+.|..+
T Consensus 160 l~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 160 LDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp TTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHH
T ss_pred cccCCCcccccccccccccccCCCCcHHHHHHHHHHH
Confidence 8 9999999999 999999999988888887765
No 214
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.37 E-value=5e-15 Score=142.25 Aligned_cols=138 Identities=15% Similarity=0.022 Sum_probs=82.3
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCcee---------EEeeccchhcccCCCCCHHHHHhhcC--
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLR---------FARYHQHLHELLDLDISPLDYMLQSF-- 491 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~---------~~~~~q~~~~~~~~~~~~~~~~~~~~-- 491 (629)
.+.+|++++|+||||||||||+++|+|. |..|.|.+++... ++|++|... ...++.+++....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 7889998876321 123332211 0111222211000
Q ss_pred ---CChhhHHHHHHHHHHcCCCCccc-ccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC
Q psy10512 492 ---PEVKDREEMRKIIGRYGLTGRQQ-VCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFE 567 (629)
Q Consensus 492 ---~~~~~~~~~~~~l~~~gl~~~~~-~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~ 567 (629)
.... ..+..++..+++..... ..++..+|+|++|+++++|++.++|+++ +|+.....+.+.+..+.
T Consensus 79 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~ 148 (191)
T 1zp6_A 79 YAKEGYF--VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG 148 (191)
T ss_dssp HHHTSCE--EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred HhccCCe--EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence 0000 00000001111111000 2345689999999999999999999876 68988888888876553
Q ss_pred --ceEEEEecC
Q psy10512 568 --GGLVLVSHD 576 (629)
Q Consensus 568 --~~vi~vsHd 576 (629)
..+++.|++
T Consensus 149 ~~~~~~i~t~~ 159 (191)
T 1zp6_A 149 AFEHHVLPVSG 159 (191)
T ss_dssp GGGGGEEECTT
T ss_pred cccccEEECCC
Confidence 234555543
No 215
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.36 E-value=5.6e-15 Score=157.18 Aligned_cols=164 Identities=9% Similarity=0.041 Sum_probs=96.8
Q ss_pred eeeeeEEEeC--CCEEEEECCCCCchHHHHHHHHcCCCCCc----cEEEECCceeEEeeccchhcccCCCCCHHHHHhhc
Q psy10512 417 YRNLEFGIDL--DTRLALVGPNGAGKSTLLNLIYGDLTPSV----GMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQS 490 (629)
Q Consensus 417 l~~vsl~i~~--Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~----G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 490 (629)
...|++.|.+ |++++|+||||||||||+++|+|++.|++ |.+.+.+... ... ......-...+...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~----~~~----~~~~~~~~~~I~~~ 229 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG----GDE----QAMQYSDYPQMALG 229 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS----SCT----TSSCTTTHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC----CCc----ccCChhHHHHHHHH
Confidence 4678999999 99999999999999999999999999998 7664421000 000 00000000111111
Q ss_pred CCChhhHHHHHHHHHHcCC-CCcccccCcCcCChhHHHHHHHHHHHc-cCCCEEEEeC---CC------CCCCHHHHHHH
Q psy10512 491 FPEVKDREEMRKIIGRYGL-TGRQQVCPIRQLSDGQKCRVVFAYLAW-QAPHLLLLDE---PT------NHLDMETIDAL 559 (629)
Q Consensus 491 ~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~~LSgGqkqrv~lAral~-~~p~lLlLDE---PT------~~LD~~~~~~l 559 (629)
.. ..........+.+-+ ........+..+|+|++++..+++++. .+|+++|||| |+ .++|+..+..+
T Consensus 230 ~q--~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l 307 (365)
T 1lw7_A 230 HQ--RYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQF 307 (365)
T ss_dssp HH--HHHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHH
T ss_pred HH--HHHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHH
Confidence 00 000000011111111 001111123456777788888888874 6999999999 65 58999999999
Q ss_pred HHHHhhc----CceEEEEecCHHHHHhhcCEEEEEe
Q psy10512 560 ADAINDF----EGGLVLVSHDFRLINQVAEEIWICE 591 (629)
Q Consensus 560 ~~~l~~~----~~~vi~vsHd~~~~~~~~d~i~~l~ 591 (629)
.++|.++ +.+||+++|. ....++|+++.+++
T Consensus 308 ~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 308 QQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 8888443 5689999986 45556777666554
No 216
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.35 E-value=1.4e-12 Score=141.63 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=67.7
Q ss_pred cCcCcCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC---ceEEEEecCHHHHHhhcCEEE
Q psy10512 516 CPIRQLSDGQKCRVVFAYLAW----QAPHLLLLDEPTNHLDMETIDALADAINDFE---GGLVLVSHDFRLINQVAEEIW 588 (629)
Q Consensus 516 ~~~~~LSgGqkqrv~lAral~----~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~---~~vi~vsHd~~~~~~~~d~i~ 588 (629)
+++..||||||||++||++|+ .+|++|||||||++||+..+..|.+.|.++. .++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 456889999999999999999 5899999999999999999999999998863 4899999997765 5799999
Q ss_pred EEe
Q psy10512 589 ICE 591 (629)
Q Consensus 589 ~l~ 591 (629)
+|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 217
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.35 E-value=2.3e-13 Score=129.62 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=35.3
Q ss_pred cCCCEEEEeCCCC-CCCHHHHHHHHHHHhh---cCCEEEEEecCHH
Q psy10512 249 VKPHLLLLDEPTN-HLDLDACVWLEEELKT---YKRILVIISHSQD 290 (629)
Q Consensus 249 ~~P~iLLLDEPT~-~LD~~~~~~l~~~L~~---~~~tvIivsHd~~ 290 (629)
.+|++||||||++ ++|+.....+.+.+.. .+.++|++||...
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 3999999999985 9999999888887754 3689999998763
No 218
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.32 E-value=6.5e-14 Score=148.59 Aligned_cols=153 Identities=16% Similarity=0.081 Sum_probs=101.9
Q ss_pred EEEeEEEE---eCC--eeee---------EeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCC
Q psy10512 89 KIANFSIT---FHG--CELL---------QDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMP 154 (629)
Q Consensus 89 ~i~nls~~---y~~--~~~L---------~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~ 154 (629)
++++++|+ |+. ..+| +++||.|++|++++|+||||||||||+++|+|++.|..|.+.+.+. .++.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~-~e~~ 215 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV-PELF 215 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS-SCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc-cccC
Confidence 56777777 753 3355 9999999999999999999999999999999999999998887532 1111
Q ss_pred CCCcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCC
Q psy10512 155 ASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFS 234 (629)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 234 (629)
..... ....-... .+....++
T Consensus 216 ~~~~~--------------------------------------~~v~~v~~---------------------q~~~~~~~ 236 (361)
T 2gza_A 216 LPDHP--------------------------------------NHVHLFYP---------------------SEAKEEEN 236 (361)
T ss_dssp CTTCS--------------------------------------SEEEEECC-----------------------------
T ss_pred ccccC--------------------------------------CEEEEeec---------------------Cccccccc
Confidence 00000 00000000 00000123
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCCe
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRK 306 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G~ 306 (629)
++..++..|+.+|..+|+.+++|||+. .+.. .+.+.+..-..|+|.++|+.+ +...++|++.+..+.
T Consensus 237 ~~~t~~~~i~~~l~~~pd~~l~~e~r~---~~~~-~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 237 APVTAATLLRSCLRMKPTRILLAELRG---GEAY-DFINVAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp --CCHHHHHHHHTTSCCSEEEESCCCS---THHH-HHHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred cccCHHHHHHHHHhcCCCEEEEcCchH---HHHH-HHHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 455688999999999999999999996 2222 233333332347889999976 777899999998764
No 219
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.32 E-value=2.2e-14 Score=137.71 Aligned_cols=161 Identities=12% Similarity=0.016 Sum_probs=82.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChh
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDE 188 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (629)
.+++|++++|+||||||||||+++|+|. |..|.+.+................++.+...... ...+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~---~v~~~l~~----- 74 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNR---MIMQIAAD----- 74 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHH---HHHHHHHH-----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhhhhH---HHHHHHHH-----
Confidence 5789999999999999999999999997 5667666543211000000000111110000000 00000000
Q ss_pred HHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhh--hcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q psy10512 189 SQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQ--QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266 (629)
Q Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~--~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~ 266 (629)
....+.. ... . ..+..++..+++. .+. +.++..+|+|++|+++++|++..+|+++ +|+.
T Consensus 75 ----~~~~~~~-~~~-~----~~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~ 135 (191)
T 1zp6_A 75 ----VAGRYAK-EGY-F----VILDGVVRPDWLP-AFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPL 135 (191)
T ss_dssp ----HHHHHHH-TSC-E----EEECSCCCTTTTH-HHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHH
T ss_pred ----HHHHHhc-cCC-e----EEEeccCcHHHHH-HHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHH
Confidence 0000000 000 0 0000011112221 111 3456789999999999999999999877 6888
Q ss_pred HHHHHHHHHhhcC--CEEEEEecCHHHHHhhccee
Q psy10512 267 ACVWLEEELKTYK--RILVIISHSQDFLNGVCTNI 299 (629)
Q Consensus 267 ~~~~l~~~L~~~~--~tvIivsHd~~~l~~~~d~i 299 (629)
....+++.+..+. ..+++.|++. .+..++++|
T Consensus 136 ~~~~~~~~~~~l~~~~~~~i~t~~~-~~~~~~~~i 169 (191)
T 1zp6_A 136 VVADLHSQFADLGAFEHHVLPVSGK-DTDQALQSA 169 (191)
T ss_dssp HHHHHHHHTTCCGGGGGGEEECTTC-CTTTTTTTT
T ss_pred HHHHHHHHHhccCcccccEEECCCC-CHHHHHHHH
Confidence 8888888776542 2344455432 223345544
No 220
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.31 E-value=1.7e-12 Score=127.98 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=41.0
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcCC
Q psy10512 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKR 305 (629)
Q Consensus 245 raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~G 305 (629)
..++..++++||| ||+.+...+.+.+. .+.||+++|||++.+.. |+ +..|
T Consensus 102 ~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~---Rl--~~rG 151 (219)
T 1s96_A 102 EQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELDR---RL--RGRG 151 (219)
T ss_dssp HHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHH---HH--HTTS
T ss_pred HHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHH---HH--HHcC
Confidence 3444568999999 99999999999887 47899999999998876 43 6666
No 221
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.31 E-value=2.2e-14 Score=143.97 Aligned_cols=131 Identities=24% Similarity=0.306 Sum_probs=82.7
Q ss_pred CCCEEEEECCCCCchHHHHHHHH---cCCCCCccEEEECCce---eEEe----eccchhcccCCCCCHHHHHhh------
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIY---GDLTPSVGMVRKNSHL---RFAR----YHQHLHELLDLDISPLDYMLQ------ 489 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~---G~~~p~~G~i~~~~~~---~~~~----~~q~~~~~~~~~~~~~~~~~~------ 489 (629)
++++++|+||||||||||+++|+ |+..|+.|.|.+.+.. .+++ +.|.. .+....++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKS--LLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999 9999999988664311 1111 11211 11111222222211
Q ss_pred -------cCCChhhHHHHHHHHHHcCCC-------------CcccccCcCcCChhHHHHHHHHHHH-ccCCCEEEEe---
Q psy10512 490 -------SFPEVKDREEMRKIIGRYGLT-------------GRQQVCPIRQLSDGQKCRVVFAYLA-WQAPHLLLLD--- 545 (629)
Q Consensus 490 -------~~~~~~~~~~~~~~l~~~gl~-------------~~~~~~~~~~LSgGqkqrv~lAral-~~~p~lLlLD--- 545 (629)
+++. ....+..+.....+. .....+++..||| || +++ +.+|++++||
T Consensus 104 ~~~~il~g~~~--~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 104 GQHWLLDGFPR--TLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp TSCEEEESCCC--SHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred CCeEEEECCCC--CHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 1222 122233332111211 1112345678999 66 677 9999999999
Q ss_pred -CCCCCCCHHHHHHHHHHHhhcC
Q psy10512 546 -EPTNHLDMETIDALADAINDFE 567 (629)
Q Consensus 546 -EPT~~LD~~~~~~l~~~l~~~~ 567 (629)
|||++||+.+.+.+.+.|..+.
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999988887763
No 222
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.31 E-value=2.6e-15 Score=144.26 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecC-HHHHHhhcceeEEEc
Q psy10512 234 SGGWRMRIALAR------ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHS-QDFLNGVCTNIIHLD 303 (629)
Q Consensus 234 SGGqrqRv~LAr------aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIivsHd-~~~l~~~~d~ii~l~ 303 (629)
|+|++|++.++. +|+.+|....+|+ +||+..... ++.+..+ +.++|.+||. ++.+..+||+|+ +
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~ 169 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--T 169 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--H
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--h
Confidence 889888888888 8999999888884 899988777 6666554 4689999999 999999999998 9
Q ss_pred CCeEEEEc
Q psy10512 304 KRKLKYYG 311 (629)
Q Consensus 304 ~G~i~~~~ 311 (629)
+|+++..+
T Consensus 170 ~g~~~~~~ 177 (189)
T 2bdt_A 170 NPRFIFCM 177 (189)
T ss_dssp CGGGSCC-
T ss_pred CCcEEEee
Confidence 99988654
No 223
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.31 E-value=3.7e-15 Score=143.21 Aligned_cols=158 Identities=11% Similarity=0.029 Sum_probs=93.2
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----eEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHH
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----RFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMR 501 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (629)
|++++|+||||||||||+++|++ |..|.+.+++.. ..+++++... .....++.+.+. ..+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~---------~~~~ 67 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWES--DELLALTWKNIT---------DLTV 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGC--HHHHHHHHHHHH---------HHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccc--hhHHHHHHHHHH---------HHHH
Confidence 67999999999999999999997 677888776531 1122222110 000001111110 0011
Q ss_pred HHHHHcCC----C---CcccccCcCcC--ChhHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q psy10512 502 KIIGRYGL----T---GRQQVCPIRQL--SDGQKCRVVFAY------LAWQAPHLLLLDEPTNHLDMETIDALADAINDF 566 (629)
Q Consensus 502 ~~l~~~gl----~---~~~~~~~~~~L--SgGqkqrv~lAr------al~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~ 566 (629)
.++ ..+. + .......+..+ |+|++|++.++. +++.+|....+|+ +||+..+.. ++.+..+
T Consensus 68 ~~~-~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~ 142 (189)
T 2bdt_A 68 NFL-LAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESK 142 (189)
T ss_dssp HHH-HTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHT
T ss_pred HHH-hcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhc
Confidence 111 1111 0 00001112345 889888888888 8888998888884 899988877 7777665
Q ss_pred ---CceEEEEecC-HHHHHhhcCEEEEEeCCEEEEecCCHHHHH
Q psy10512 567 ---EGGLVLVSHD-FRLINQVAEEIWICENGKVTKWEGNILDYK 606 (629)
Q Consensus 567 ---~~~vi~vsHd-~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 606 (629)
+.++|.+||. ++.+..+||+|+ ++|+++ +.|+++-+.
T Consensus 143 ~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~-~~~~~~~~~ 183 (189)
T 2bdt_A 143 GIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFI-FCMAGDPLE 183 (189)
T ss_dssp TCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGS-CC-------
T ss_pred CCCccEEEeCCCCChhhHHHHHHHHh--hCCcEE-EeecCCchh
Confidence 3578889998 999999999998 999986 577766543
No 224
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.30 E-value=2.2e-13 Score=146.03 Aligned_cols=168 Identities=9% Similarity=0.029 Sum_probs=98.2
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCE--EEEECCCCCchHHHHHHHHcCCCCCccEEEEC---C--ceeEEeecc
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR--LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN---S--HLRFARYHQ 471 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~--i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~---~--~~~~~~~~q 471 (629)
.|++.+ ++.|++ .+ ++++||+|++|++ ++|+||||||||||+++|+|+.- .|..... + ...+++++|
T Consensus 16 ~l~~~~-~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q 89 (427)
T 2qag_B 16 TVPLAG-HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQ 89 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEE
T ss_pred eEEEee-EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEee
Confidence 356667 788853 33 9999999999999 99999999999999999999852 2211110 0 124667766
Q ss_pred chhcccCCCCCHHHHHhhcCC-Ch---------hhHHHHHHHHHHc-CCCCc---ccccC----c-------CcCChhHH
Q psy10512 472 HLHELLDLDISPLDYMLQSFP-EV---------KDREEMRKIIGRY-GLTGR---QQVCP----I-------RQLSDGQK 526 (629)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~l~~~-gl~~~---~~~~~----~-------~~LSgGqk 526 (629)
.... ...+++.+++..+.. .. .....+..+|..+ ++... ..+.+ + ..|+...
T Consensus 90 ~~~l--~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D- 166 (427)
T 2qag_B 90 ESNV--RLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD- 166 (427)
T ss_dssp C--C--EEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-
T ss_pred cCcc--ccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-
Confidence 5321 112233222211110 00 0123445556655 54311 01111 1 2455555
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh-c---CceEEEEecCH
Q psy10512 527 CRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND-F---EGGLVLVSHDF 577 (629)
Q Consensus 527 qrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~-~---~~~vi~vsHd~ 577 (629)
+.|+++|..++++|++|+||..|.+.....+.+.+.+ + +.+|+.+|.|-
T Consensus 167 --ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 167 --LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp --HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred --HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 7999999999999999999999999888888777764 3 45788888753
No 225
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.29 E-value=6.7e-13 Score=142.75 Aligned_cols=146 Identities=23% Similarity=0.242 Sum_probs=89.2
Q ss_pred eeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcC-----------CCCCccEEEECCceeEEeeccchhcccCCCCCHHH
Q psy10512 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGD-----------LTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLD 485 (629)
Q Consensus 417 l~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~-----------~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~ 485 (629)
-++++|+++.|++++|+|+|||||||||++|+|. +.|+.|.|.+.+...+. +.+.+. ......+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~-l~DtpG----li~~a~~ 221 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFT-LADIPG----IIEGASE 221 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEE-EEECCC----CCCCGGG
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEE-EEeccc----cccchhh
Confidence 5889999999999999999999999999999998 34445555444311111 111100 0000000
Q ss_pred HHhhcCCCh--hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH---H
Q psy10512 486 YMLQSFPEV--KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL---A 560 (629)
Q Consensus 486 ~~~~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l---~ 560 (629)
+ ..+... ...+++..++..++++ ..++.+||+|++|++.+|++|+..|.||+| |.+|+.....+ .
T Consensus 222 ~--~~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~ 291 (416)
T 1udx_A 222 G--KGLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALA 291 (416)
T ss_dssp S--CCSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHH
T ss_pred h--hhhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHH
Confidence 0 000000 0001122233444554 346789999999999999999999999999 99998655322 2
Q ss_pred HHHhhcCceEEEEe-cCH
Q psy10512 561 DAINDFEGGLVLVS-HDF 577 (629)
Q Consensus 561 ~~l~~~~~~vi~vs-Hd~ 577 (629)
+.+.+.+.++|+|| |.-
T Consensus 292 ~~l~~~g~~vi~iSA~~g 309 (416)
T 1udx_A 292 DALAREGLAVLPVSALTG 309 (416)
T ss_dssp HHHHTTTSCEEECCTTTC
T ss_pred HHHHhcCCeEEEEECCCc
Confidence 33333345676665 443
No 226
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.28 E-value=2e-13 Score=140.82 Aligned_cols=118 Identities=19% Similarity=0.086 Sum_probs=81.4
Q ss_pred eeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhH
Q psy10512 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDR 497 (629)
Q Consensus 418 ~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (629)
++++|+ +|++++|+|+||+||||++..|+|.+.+..|+|.+.+.. .+.. .. .
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d-----~~~~---------~~------------~ 142 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD-----TQRP---------AA------------R 142 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC-----SSCH---------HH------------H
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC-----cccH---------hH------------H
Confidence 345566 899999999999999999999999999988888653210 0000 00 0
Q ss_pred HHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCC-CCCCCHHHHHHHHHHHhhc
Q psy10512 498 EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP-TNHLDMETIDALADAINDF 566 (629)
Q Consensus 498 ~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP-T~~LD~~~~~~l~~~l~~~ 566 (629)
.....+.+..|+.-.... ...+..+.+|.+|+.+...+++++|+||| +.++|......+.......
T Consensus 143 ~ql~~~~~~~~l~~~~~~---~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 143 EQLRLLGEKVGVPVLEVM---DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHTCCEEECC---TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCeEEEEcC---CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 011123345566422111 11234456789999998899999999999 9999998888887776654
No 227
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.28 E-value=6.4e-13 Score=126.48 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=71.3
Q ss_pred eEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHH
Q psy10512 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEM 500 (629)
Q Consensus 421 sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (629)
+|.+.+|+.++|+||||||||||+++|++.+.|..|... .|+ +..+.+ ..+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-------~~~------------~~~~~~----------~~~ 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-------YFF------------DTKDLI----------FRL 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-------CEE------------EHHHHH----------HHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-------EEE------------EHHHHH----------HHH
Confidence 456778999999999999999999999999877666321 010 011110 001
Q ss_pred HHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc---CceEEEEecC
Q psy10512 501 RKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN-HLDMETIDALADAINDF---EGGLVLVSHD 576 (629)
Q Consensus 501 ~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~-~LD~~~~~~l~~~l~~~---~~~vi~vsHd 576 (629)
........ .. -....+.+|++||||||++ ++|+.....+.+++... +.++|++||.
T Consensus 83 ~~~~~~~~------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 83 KHLMDEGK------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHTC------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHhcCch------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11111100 00 0112234899999999985 99999999998888654 5689999987
Q ss_pred H
Q psy10512 577 F 577 (629)
Q Consensus 577 ~ 577 (629)
.
T Consensus 143 ~ 143 (180)
T 3ec2_A 143 S 143 (180)
T ss_dssp C
T ss_pred C
Confidence 5
No 228
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.26 E-value=4.1e-11 Score=128.25 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=41.0
Q ss_pred cCCCEEEEeCCCCCCCHHHH------------HHHHHHH----hhcCCEEEEEecCH-------------------HHHH
Q psy10512 249 VKPHLLLLDEPTNHLDLDAC------------VWLEEEL----KTYKRILVIISHSQ-------------------DFLN 293 (629)
Q Consensus 249 ~~P~iLLLDEPT~~LD~~~~------------~~l~~~L----~~~~~tvIivsHd~-------------------~~l~ 293 (629)
.+|++|++||||+.+|.+.. ..+...| ++++.|||+|+|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999996432 3333433 45589999999982 2357
Q ss_pred hhcceeEEEcCC
Q psy10512 294 GVCTNIIHLDKR 305 (629)
Q Consensus 294 ~~~d~ii~l~~G 305 (629)
.+||.+++|+.+
T Consensus 352 ~~ad~vl~L~~~ 363 (400)
T 3lda_A 352 YSSTTRLGFKKG 363 (400)
T ss_dssp HHCSEEEEEEEC
T ss_pred HhcceEEEEEec
Confidence 789999999875
No 229
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.24 E-value=6.8e-14 Score=130.73 Aligned_cols=59 Identities=15% Similarity=-0.090 Sum_probs=52.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
++.+++++.|+++.+++++||+|++|++++|+||||||||||+|+|+|++ |++|.|.+.
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~ 66 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSP 66 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCC
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEEC
Confidence 33456788888788999999999999999999999999999999999999 999988653
No 230
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.23 E-value=2.2e-12 Score=135.65 Aligned_cols=114 Identities=17% Similarity=0.100 Sum_probs=74.3
Q ss_pred eeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC-CCccEEEEC-C-------ceeEEeeccchhcccCCCCCHHHHH
Q psy10512 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT-PSVGMVRKN-S-------HLRFARYHQHLHELLDLDISPLDYM 487 (629)
Q Consensus 417 l~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-p~~G~i~~~-~-------~~~~~~~~q~~~~~~~~~~~~~~~~ 487 (629)
++++++. .+|++++|+||||||||||+++|+|+.. |+.|.|... + ...+++++|... +....++.++.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~--l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGD--VIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCE--EEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCE--ecCcccHHHhh
Confidence 5566654 4799999999999999999999999999 999999865 3 124667766532 22222333321
Q ss_pred hhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHH
Q psy10512 488 LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535 (629)
Q Consensus 488 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 535 (629)
....+.......+.++++.+|+.... ++++.+|| ||+||++||+++
T Consensus 283 l~~l~~~e~~~~~~e~l~~~gl~~f~-~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 LWHLEPEQITQGFVEFHDYLGHCKYR-DCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CCCCCHHHHHHTSGGGGGGTTCSSST-TCCSSSCT-TCHHHHHHHHTS
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhc-CCCcccCC-HHHHHHHHHhcC
Confidence 11111111233456778888987654 56778999 999999999875
No 231
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.23 E-value=3.5e-11 Score=128.80 Aligned_cols=142 Identities=13% Similarity=0.177 Sum_probs=83.6
Q ss_pred EEeCCCEEEEECCCCCchHHHHH--HHHcCCCCCcc-----EEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChh
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLN--LIYGDLTPSVG-----MVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk--~l~G~~~p~~G-----~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 495 (629)
.|++|++++|+||||||||||++ ++.++.+|+.| .+++++.. ..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~---------------~~-------------- 224 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG---------------TF-------------- 224 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC--------------
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC---------------cc--------------
Confidence 57899999999999999999999 44677777554 33332210 00
Q ss_pred hHHHHHHHHHHcCCCCccc--ccCcCcCChhHHHHHHH--HHHH--ccCCCEEEEeCCCCCCCHHHH------------H
Q psy10512 496 DREEMRKIIGRYGLTGRQQ--VCPIRQLSDGQKCRVVF--AYLA--WQAPHLLLLDEPTNHLDMETI------------D 557 (629)
Q Consensus 496 ~~~~~~~~l~~~gl~~~~~--~~~~~~LSgGqkqrv~l--Aral--~~~p~lLlLDEPT~~LD~~~~------------~ 557 (629)
...++..+...+|+..... +-.+.....++.++-.+ +..+ ..+|++||+||||+.+|.+.. .
T Consensus 225 ~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~ 304 (400)
T 3lda_A 225 RPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLA 304 (400)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHH
Confidence 0122233344445432100 00111223343333333 3232 257999999999999996432 3
Q ss_pred HHHHHH----hhcCceEEEEecCH-------------------HHHHhhcCEEEEEeCC
Q psy10512 558 ALADAI----NDFEGGLVLVSHDF-------------------RLINQVAEEIWICENG 593 (629)
Q Consensus 558 ~l~~~l----~~~~~~vi~vsHd~-------------------~~~~~~~d~i~~l~~G 593 (629)
.++..| ++++.+||+|+|.. ..+..+||.+++|+.+
T Consensus 305 ~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 305 KFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 344444 34578999999982 3357889999999865
No 232
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.22 E-value=7.5e-13 Score=142.36 Aligned_cols=160 Identities=19% Similarity=0.146 Sum_probs=89.1
Q ss_pred eEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC------ceEEEeecccCCCCCcchhhhhhhchHHHHHHHH
Q psy10512 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD------HIDIFHLTREMPASDKSALTCVMEVDEERVRLEK 176 (629)
Q Consensus 103 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (629)
-++++|+++.|+.++|||+|||||||||++|+|..+...+ ...+..+...- ..... +.+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~----l~Dtp-------- 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFT----LADIP-------- 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEE----EEECC--------
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEE----EEecc--------
Confidence 4799999999999999999999999999999997421000 00010000000 00000 00000
Q ss_pred HHHHHhccCChhHHHHHHHHHhhhhccChhh--HHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEE
Q psy10512 177 LAEQLVACEDDESQEQLMDIYDRLDDISADT--AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLL 254 (629)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iL 254 (629)
.+.... .....+.... ..+++..+|..+++. +.++.+||+|++|++++|++|+..|.||
T Consensus 214 ------Gli~~a---------~~~~~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~IL 274 (416)
T 1udx_A 214 ------GIIEGA---------SEGKGLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLV 274 (416)
T ss_dssp ------CCCCCG---------GGSCCSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred ------ccccch---------hhhhhhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEE
Confidence 000000 0000000000 001122334444543 4567789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHH---HHHHHhhcCCEEEEEe-cCHHHHHhhcce
Q psy10512 255 LLDEPTNHLDLDACVW---LEEELKTYKRILVIIS-HSQDFLNGVCTN 298 (629)
Q Consensus 255 LLDEPT~~LD~~~~~~---l~~~L~~~~~tvIivs-Hd~~~l~~~~d~ 298 (629)
+| |.+|+..... +.+.+.+.+.++|+|| |..+-+..+++.
T Consensus 275 Vl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 275 AL----NKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp EE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred EE----ECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 99 9999865432 3333444466777666 554434444433
No 233
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.22 E-value=9.8e-12 Score=114.90 Aligned_cols=86 Identities=26% Similarity=0.214 Sum_probs=61.1
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHH
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG 505 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 505 (629)
+|+.++|+||||||||||+++|+|.+.+ .|. ...|+... ... . .
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-------~~~~~~~~--~~~---------------~-~---------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-------NAAYIDAA--SMP---------------L-T---------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-------CEEEEETT--TSC---------------C-C----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-------cEEEEcHH--Hhh---------------H-H----------
Confidence 8999999999999999999999999887 451 11122110 000 0 0
Q ss_pred HcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---Cce-EEEEecC
Q psy10512 506 RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGG-LVLVSHD 576 (629)
Q Consensus 506 ~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~-vi~vsHd 576 (629)
+++.+|++||||||+. +|....+.+.++++.. +.+ +|++||.
T Consensus 79 ----------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 ----------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp ----------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred ----------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 2356899999999998 6655577888877654 466 7888884
No 234
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.22 E-value=1.9e-12 Score=138.79 Aligned_cols=172 Identities=15% Similarity=0.122 Sum_probs=92.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhCCCCC-------CCCce--EEEeecccCCC
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRR--YGLLGLNGSGKSTLLAVLGNREVP-------VPDHI--DIFHLTREMPA 155 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~L~g~~~p-------~~g~i--~i~~~~~~~~~ 155 (629)
.+++.+ +++|++.+ |+++||+|++|++ ++||||||||||||+++|+|+... .++.. .+.+..++...
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l 93 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNV 93 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--C
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCcc
Confidence 477777 89999888 9999999999999 999999999999999999998421 01110 01111111000
Q ss_pred C-CcchhhhhhhchHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhC-CCCch---hhhcc-
Q psy10512 156 S-DKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL-GFTKE---MQQKK- 229 (629)
Q Consensus 156 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~~---~~~~~- 229 (629)
. ..+....+. +....... ..+..+ ......++..+|... ++... ..+..
T Consensus 94 ~~~ltv~D~~~------------------~g~~~~~~---~~~~~i----~~~i~~q~~~~L~e~~~i~r~l~~~~d~rV 148 (427)
T 2qag_B 94 RLKLTIVSTVG------------------FGDQINKE---DSYKPI----VEFIDAQFEAYLQEELKIRRVLHTYHDSRI 148 (427)
T ss_dssp EEEEEEEEEEC------------------CCC-CCHH---HHSHHH----HHHHHHHHHHHHHHC--CCCCCCCSCC--C
T ss_pred ccccchhhhhh------------------hhhccccc---hhhhHH----HHHHHHHHHHHHHHHHhhhhhhcccccccc
Confidence 0 000000000 00000000 000000 001123334444433 33200 01111
Q ss_pred ---c-------CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecC
Q psy10512 230 ---T-------KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT----YKRILVIISHS 288 (629)
Q Consensus 230 ---~-------~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~----~~~tvIivsHd 288 (629)
+ ..|+-.. +.|+++|..+++||++||||..|.+.....+.+.+.+ .+.+|+.+|.|
T Consensus 149 h~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 149 HVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred cEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 1 2455555 8999999999999999999999999888877766653 46788888865
No 235
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.21 E-value=6.5e-12 Score=116.13 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=26.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNREVP 139 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~~p 139 (629)
+|+.++|+||||||||||+++|++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999997655
No 236
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.17 E-value=1.4e-13 Score=148.13 Aligned_cols=160 Identities=16% Similarity=0.096 Sum_probs=88.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcc--hhhhhh
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKS--ALTCVM 165 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~--~~~~~~ 165 (629)
+.++++++.|+...+|+++ + ..+|++++|+|||||||||||++|+|++.|..|+|.+.....+....... .+..-.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~ 221 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRV 221 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGG
T ss_pred CCHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcccc
Confidence 3445555555545567776 4 37899999999999999999999999998888988776543332211100 000000
Q ss_pred hchHHHHHHHH-HHHHHhc--cC---ChhHHHHHHHHHhh----hhccChhhHHHHHHHHHHhCCCCchhhhcccCCCCh
Q psy10512 166 EVDEERVRLEK-LAEQLVA--CE---DDESQEQLMDIYDR----LDDISADTAEARAANILHGLGFTKEMQQKKTKDFSG 235 (629)
Q Consensus 166 ~~~~~~~~~~~-~~~~~~~--~~---~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 235 (629)
.... ...+.. +.+.... .. +..+.......... +..+....... +...|..+|+... ..+.+|||
T Consensus 222 g~~f-~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~---~~~~~LSg 296 (418)
T 1p9r_A 222 DMTF-ARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPF---LISSSLLG 296 (418)
T ss_dssp TBCH-HHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHH---HHHHHEEE
T ss_pred CcCH-HHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHH---HHHHHHHH
Confidence 0000 000000 0010000 01 11223222222110 11111122222 3345777888642 26789999
Q ss_pred HHHHHHHHHHHHccCCCEEEE
Q psy10512 236 GWRMRIALARALYVKPHLLLL 256 (629)
Q Consensus 236 GqrqRv~LAraL~~~P~iLLL 256 (629)
||+|| |||+|+.+|+++.-
T Consensus 297 g~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 297 VLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEE--EEEEECTTTCEEEE
T ss_pred HHHHH--hhhhhcCCCCccCC
Confidence 99999 99999999998763
No 237
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.17 E-value=1.9e-13 Score=142.55 Aligned_cols=53 Identities=19% Similarity=0.117 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhh
Q psy10512 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGV 295 (629)
Q Consensus 232 ~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~~ 295 (629)
+||+||+||+..+++++.+|+++ ||| ..+.+.|+++ +.+|+++||+...+..+
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGG
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHH
Confidence 79999999999999999999987 999 4455555443 57999999975444433
No 238
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.17 E-value=3.2e-13 Score=131.91 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=82.3
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCCCC---ccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHH
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLTPS---VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEM 500 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (629)
.++|++++|+||||||||||+++|+|++.|+ .|.|..++.. +........ .. .. ....+...+...+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~----~~~~~~~~~--~~--~~--~~~~~~~~~~~~~ 88 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH----LDNRLLEPR--GL--LP--RKGAPETFDFEGF 88 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB----CCHHHHGGG--TC--GG--GTTSGGGBCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc----CCHHHHHHh--cc--cc--cCCCCchhhHHHH
Confidence 4689999999999999999999999999864 5666544321 110000000 00 00 0011111122223
Q ss_pred HHHHHHcCCCC----cccccCcCcCChhHHHHHHHH-HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEec
Q psy10512 501 RKIIGRYGLTG----RQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSH 575 (629)
Q Consensus 501 ~~~l~~~gl~~----~~~~~~~~~LSgGqkqrv~lA-ral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsH 575 (629)
...+..+.... ...+ ....+|+||+|+++++ ++++.++.++++|||.. ..+..+-..+|++++
T Consensus 89 ~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd~ 156 (208)
T 3c8u_A 89 QRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLEV 156 (208)
T ss_dssp HHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEECC
T ss_pred HHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEeC
Confidence 33333331111 1112 2235799999999988 77788888877888741 112333457899999
Q ss_pred CHHH-HHhhcCE
Q psy10512 576 DFRL-INQVAEE 586 (629)
Q Consensus 576 d~~~-~~~~~d~ 586 (629)
+.+. +.+++.|
T Consensus 157 ~~~~~~~R~~~R 168 (208)
T 3c8u_A 157 PMADLEARLVQR 168 (208)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 9886 5666666
No 239
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.16 E-value=6.2e-14 Score=154.85 Aligned_cols=157 Identities=13% Similarity=0.122 Sum_probs=96.7
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCcee--------EEeeccchhcccCCCCCHHHHH
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLR--------FARYHQHLHELLDLDISPLDYM 487 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~--------~~~~~q~~~~~~~~~~~~~~~~ 487 (629)
++++++|.|.+|+.++|+|||||||||||++|+|+++|+.|.|.+.+..- +.+..+... .....+..+.+
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~--~~~~~~~~~~l 326 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGM--GEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCS--SSCCBCHHHHH
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeeccc--ccCCcCHHHHH
Confidence 57889999999999999999999999999999999999999998865321 111111100 00011111111
Q ss_pred -------------------------h---hcCCChh--hHHHHHHHHHHcCC-----CCccc---c---cCcCcCChhHH
Q psy10512 488 -------------------------L---QSFPEVK--DREEMRKIIGRYGL-----TGRQQ---V---CPIRQLSDGQK 526 (629)
Q Consensus 488 -------------------------~---~~~~~~~--~~~~~~~~l~~~gl-----~~~~~---~---~~~~~LSgGqk 526 (629)
. .+..... -...+.+++.++.. ..... + .....+|+||+
T Consensus 327 ~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 327 RAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp HTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 0 0100000 00112333333322 21110 0 12246899999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CceEEE--EecCHHHHHhhcCE
Q psy10512 527 CRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVL--VSHDFRLINQVAEE 586 (629)
Q Consensus 527 qrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~---~~~vi~--vsHd~~~~~~~~d~ 586 (629)
||++++. + | |+|||+.+...+++.|.++ +.++++ +||+++.+...|+.
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence 9987751 2 7 9999998877666666555 357764 89999999988863
No 240
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.16 E-value=7.1e-14 Score=145.79 Aligned_cols=141 Identities=16% Similarity=0.125 Sum_probs=81.2
Q ss_pred CEEEEECCCCCchHHHHHHHHcCC--------CCCccEEEECCcee--------------------------EEee---c
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDL--------TPSVGMVRKNSHLR--------------------------FARY---H 470 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~--------~p~~G~i~~~~~~~--------------------------~~~~---~ 470 (629)
++++|+|+|||||||||+.|.|+. .|+.|+|.+++..- ++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 78999987765321 0011 0
Q ss_pred cchhcccCCCCCHHHHHhhcCCChhhH-----HHH------HHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCC
Q psy10512 471 QHLHELLDLDISPLDYMLQSFPEVKDR-----EEM------RKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539 (629)
Q Consensus 471 q~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 539 (629)
|.. .+.++.++.++.....+..... ... ..++..+++..... .. .+||+||+||+..+++++.+|
T Consensus 85 q~~--~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~-~~-~~ls~g~~Q~~~ad~ill~k~ 160 (318)
T 1nij_A 85 DKG--NIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADE-QM-NQFTIAQSQVGYADRILLTKT 160 (318)
T ss_dssp HHT--SCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHH-HH-HHCHHHHHHHHTCSEEEEECT
T ss_pred hcC--CCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHH-HH-hhchHHHHHHHhCCEEEEECc
Confidence 110 0011111111111000000000 000 01122334433222 22 379999999999989999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHHHHHhh
Q psy10512 540 HLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQV 583 (629)
Q Consensus 540 ~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~~~~~~ 583 (629)
+++ ||| ..+.+.|+++ +.+|+++||+...+..+
T Consensus 161 dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 161 DVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp TTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGG
T ss_pred ccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHH
Confidence 987 999 4555555554 46899999964444333
No 241
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.16 E-value=1.6e-11 Score=129.26 Aligned_cols=127 Identities=17% Similarity=0.235 Sum_probs=72.4
Q ss_pred EEEEECCCCCchHHHHHHHHc-CCCCCccEEEECCce---------eEEeeccchhcccCCCCCHHHHHhhcCCChhhHH
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG-DLTPSVGMVRKNSHL---------RFARYHQHLHELLDLDISPLDYMLQSFPEVKDRE 498 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G-~~~p~~G~i~~~~~~---------~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (629)
.+.|+||||+|||||+++|+| ++.|+.|.+.+++.. .++++++.....+. .+ + . ......
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~-----~-~~~~~~ 107 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEIT--PS--D-----M-GNNDRI 107 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEEC--CC------------CCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEec--Hh--h-----c-CCcchH
Confidence 389999999999999999999 889999998776421 12233322111010 00 0 0 001111
Q ss_pred HHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--ceEEEEecC
Q psy10512 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFE--GGLVLVSHD 576 (629)
Q Consensus 499 ~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~--~~vi~vsHd 576 (629)
.+++.++.+.-..... ... .||| +..+|++||||||++ ||..+...|.+.|.+.. .++|++||+
T Consensus 108 ~~~~~i~~~~~~~~~~-~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 108 VIQELLKEVAQMEQVD-FQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp HHHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred HHHHHHHHHHHhcccc-ccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 3444444442211111 111 5676 788999999999999 99999999999999873 579999999
Q ss_pred HHH
Q psy10512 577 FRL 579 (629)
Q Consensus 577 ~~~ 579 (629)
...
T Consensus 174 ~~~ 176 (354)
T 1sxj_E 174 MSP 176 (354)
T ss_dssp SCS
T ss_pred HHH
Confidence 653
No 242
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.14 E-value=2.8e-13 Score=142.29 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=57.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEee
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHL 149 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~ 149 (629)
.|+++++++.|++..+|+++||++.+|++++|+||||||||||+++|+|++.|..|.+.+...
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~ 91 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 91 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEE
Confidence 377889999998788999999999999999999999999999999999999998999887654
No 243
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.14 E-value=5.5e-14 Score=151.38 Aligned_cols=135 Identities=12% Similarity=0.018 Sum_probs=86.9
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCcee-------------
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLR------------- 465 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~------------- 465 (629)
++.++++++.|+. ..+|+++ + ..+|++++|+|||||||||||++|+|+++|++|.|...+...
T Consensus 143 ~~~l~~Lg~~~~~--~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 143 RLDLHSLGMTAHN--HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCCGGGSCCCHHH--HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCCHHHcCCCHHH--HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 4566677666632 2267777 5 378999999999999999999999999999999997643210
Q ss_pred --EEee---------ccchhcccCCC----CCHHHHHhh---c------CCChhhHHHHHHHHHHcCCCCcccccCcCcC
Q psy10512 466 --FARY---------HQHLHELLDLD----ISPLDYMLQ---S------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQL 521 (629)
Q Consensus 466 --~~~~---------~q~~~~~~~~~----~~~~~~~~~---~------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 521 (629)
+++. .|.+...+... .++.+.+.. + ... .....+...|..+|+.... .+.+|
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~-~~~~~~i~rL~~lgl~~~~---~~~~L 294 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHT-NTAVGAVTRLRDMGIEPFL---ISSSL 294 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECC-SSSHHHHHHHHHHTCCHHH---HHHHE
T ss_pred cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccch-hhHHHHHHHHHHcCCcHHH---HHHHH
Confidence 1111 12221111111 233333321 1 011 1112334457788886532 56799
Q ss_pred ChhHHHHHHHHHHHccCCCEEE
Q psy10512 522 SDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 522 SgGqkqrv~lAral~~~p~lLl 543 (629)
||||+|| |||+|+.+|+++.
T Consensus 295 Sgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 295 LGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHH--hhhhhcCCCCccC
Confidence 9999999 9999999999876
No 244
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.13 E-value=3.7e-12 Score=138.34 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=42.0
Q ss_pred eeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC
Q psy10512 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462 (629)
Q Consensus 418 ~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 462 (629)
+++||++.+|++++|+|+||||||||+++|+|+++|+.|+|.+.+
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g 328 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA 328 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEec
Confidence 568899999999999999999999999999999999999998853
No 245
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.12 E-value=4.7e-12 Score=132.13 Aligned_cols=154 Identities=11% Similarity=0.052 Sum_probs=87.2
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCcee-----------------EEeeccchhcccCCCCCHHHH
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLR-----------------FARYHQHLHELLDLDISPLDY 486 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~-----------------~~~~~q~~~~~~~~~~~~~~~ 486 (629)
.++|++++|+||||||||||+++|+|+++|+.|+|.+.+... +.+++|... ..+..++.+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~--~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG--ADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTT--CCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecccc--CCHHHHHHHH
Confidence 367999999999999999999999999999999998764211 112222110 0111111111
Q ss_pred HhhcCCChhhHHHHH-HHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 487 MLQSFPEVKDREEMR-KIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND 565 (629)
Q Consensus 487 ~~~~~~~~~~~~~~~-~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~ 565 (629)
+.... ..... -+++..|..+.. ...+.+|| .+++++..++.+++||.+|. .|. ...+...-..
T Consensus 204 l~~~~-----~~~~d~vliDtaG~~~~~-~~l~~eL~-------~i~ral~~de~llvLDa~t~-~~~--~~~~~~~~~~ 267 (328)
T 3e70_C 204 IQHAK-----ARGIDVVLIDTAGRSETN-RNLMDEMK-------KIARVTKPNLVIFVGDALAG-NAI--VEQARQFNEA 267 (328)
T ss_dssp HHHHH-----HHTCSEEEEEECCSCCTT-TCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-THH--HHHHHHHHHH
T ss_pred HHHHH-----hccchhhHHhhccchhHH-HHHHHHHH-------HHHHHhcCCCCEEEEecHHH-HHH--HHHHHHHHHh
Confidence 11000 00000 001112221111 11223333 48999999999999996665 332 2222222234
Q ss_pred cCceEEEEecCH---------HHHHhhcCEEEEEeCCEE
Q psy10512 566 FEGGLVLVSHDF---------RLINQVAEEIWICENGKV 595 (629)
Q Consensus 566 ~~~~vi~vsHd~---------~~~~~~~d~i~~l~~G~i 595 (629)
.+.++|++||.- ..+....-.|.++..|+-
T Consensus 268 ~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 268 VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 578899999953 234455567888888864
No 246
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.11 E-value=1.1e-12 Score=137.79 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=101.3
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc---------------e
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------------L 464 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~ 464 (629)
|+++++++.|+. ..+++++||++.+|++++|+||||||||||+++|+|++.|+.|+|.+.+. .
T Consensus 30 ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 30 AESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 456677777742 23799999999999999999999999999999999999999999976431 1
Q ss_pred eEEeeccchhcccCCCC----------CHHHH-------------------------Hhhc-------C-CC-hhhHH--
Q psy10512 465 RFARYHQHLHELLDLDI----------SPLDY-------------------------MLQS-------F-PE-VKDRE-- 498 (629)
Q Consensus 465 ~~~~~~q~~~~~~~~~~----------~~~~~-------------------------~~~~-------~-~~-~~~~~-- 498 (629)
++++++|.......... ...+. +... . +. ....+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 23445554321110000 00000 0000 0 00 00000
Q ss_pred --HHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q psy10512 499 --EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ------APHLLLLDEPTNHLDMETIDALADAINDF 566 (629)
Q Consensus 499 --~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~------~p~lLlLDEPT~~LD~~~~~~l~~~l~~~ 566 (629)
.+.+....+.+. .....+...+|+|++|++..+++++. .|++++ ||++|...++.|++.|.++
T Consensus 188 ~~~i~~~~~ivvlN-K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAVN-KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEEE-CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEEE-chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 011222222231 11111234689999999999999887 688877 9999999999999998764
No 247
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.11 E-value=5e-13 Score=126.48 Aligned_cols=130 Identities=19% Similarity=0.254 Sum_probs=72.7
Q ss_pred CEEEEECCCCCchHHHHHHHHcCCCCC---ccEEEECCceeEEee---ccchh-cccC-----CCCCHHHHHhhcCCChh
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDLTPS---VGMVRKNSHLRFARY---HQHLH-ELLD-----LDISPLDYMLQSFPEVK 495 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~~~~~~~---~q~~~-~~~~-----~~~~~~~~~~~~~~~~~ 495 (629)
++++|+|+||||||||+++|+|+++|+ .|.|.+++.....+- ..... .... .......++.. . .
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~--~--~ 78 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRR--V--S 78 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEE--C--C
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEec--C--C
Confidence 589999999999999999999999998 899988764211100 00000 0000 00000000000 0 0
Q ss_pred hHH--HHHHHHHH-c-CCCCcccccCcCcCChhHHHHHHHHHHHccCCCEE-------EEeCCCC---CCCHHHHHHHHH
Q psy10512 496 DRE--EMRKIIGR-Y-GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLL-------LLDEPTN---HLDMETIDALAD 561 (629)
Q Consensus 496 ~~~--~~~~~l~~-~-gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL-------lLDEPT~---~LD~~~~~~l~~ 561 (629)
.+. .+.+++.. + |+.. .-...|||||+||++||||++.+|++. +-|.|.. .+|....+.+.+
T Consensus 79 ~~~~a~l~~~i~~~l~g~dt----~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~ 154 (171)
T 2f1r_A 79 EEEGNDLDWIYERYLSDYDL----VITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAE 154 (171)
T ss_dssp HHHHTCHHHHHHHHTTTCSE----EEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHH
T ss_pred hhhhhCHHHHHHhhCCCCCE----EEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHH
Confidence 111 34555555 4 3322 122359999999999999999998763 3355532 234455566666
Q ss_pred HHhh
Q psy10512 562 AIND 565 (629)
Q Consensus 562 ~l~~ 565 (629)
.|.+
T Consensus 155 ~i~~ 158 (171)
T 2f1r_A 155 FILS 158 (171)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 248
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.11 E-value=5e-12 Score=118.02 Aligned_cols=59 Identities=20% Similarity=0.223 Sum_probs=50.8
Q ss_pred EEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc
Q psy10512 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH 463 (629)
Q Consensus 402 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~ 463 (629)
.+++++.|+. ..+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.+.+.
T Consensus 10 ~~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~ 68 (158)
T 1htw_A 10 DEFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTY 68 (158)
T ss_dssp SHHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTT
T ss_pred CHHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCE
Confidence 3456666742 24799999999999999999999999999999999999 99999987663
No 249
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.10 E-value=3.8e-12 Score=130.70 Aligned_cols=122 Identities=12% Similarity=0.010 Sum_probs=75.9
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhh-----------cCCCh
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQ-----------SFPEV 494 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-----------~~~~~ 494 (629)
.+.+++|+|++|||||||.++|.+++.+. |. ....+.+++|+.. ..+.+..+.+.. +.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~~~~~~iv~~D~f---~~~~~~~~~l~~~~~~~~l~~~~g~p~a 101 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----GEKSIGYASIDDF---YLTHEDQLKLNEQFKNNKLLQGRGLPGT 101 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----GGSCEEEEEGGGG---BCCHHHHHHHHHHTTTCGGGSSSCSTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----CCceEEEeccccc---cCChHHHHHHhccccccchhhhccCcch
Confidence 46799999999999999999999999763 20 0111222244321 112222222211 12333
Q ss_pred hhHHHHHHHHHHcCCC------Cc-ccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q psy10512 495 KDREEMRKIIGRYGLT------GR-QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555 (629)
Q Consensus 495 ~~~~~~~~~l~~~gl~------~~-~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~ 555 (629)
.+...+.+.+..+.-. .. .....-..+||||+||+.+|++...+|+|||+||||+++|+..
T Consensus 102 ~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 102 HDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp BCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred hHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 4455666777776432 10 0111235899999999999843333899999999999999853
No 250
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.09 E-value=3.5e-11 Score=125.56 Aligned_cols=170 Identities=14% Similarity=0.105 Sum_probs=90.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHh--ccCC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLV--ACED 186 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 186 (629)
..++|++++|+||||||||||+++|+|++.|..|.+.+...+ +... ... ..+......+. ....
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D--~~r~--~a~----------eql~~~~~~~gv~~v~q 190 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD--TFRA--GAI----------EQLEEHAKRIGVKVIKH 190 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--CSST--THH----------HHHHHHHHHTTCEEECC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec--cccc--chH----------HHHHHHHHHcCceEEec
Confidence 347899999999999999999999999999999988775432 1111 000 00111111111 1111
Q ss_pred hhHHHHHHHHHhhhhccChhhHHHHH-HHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q psy10512 187 DESQEQLMDIYDRLDDISADTAEARA-ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265 (629)
Q Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~ 265 (629)
.........+++.+.. .. .... .-+++..|... .....+.+|| .++|++..++.+++||.+|. .|.
T Consensus 191 ~~~~~p~~~v~e~l~~---~~-~~~~d~vliDtaG~~~-~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-~~~ 257 (328)
T 3e70_C 191 SYGADPAAVAYDAIQH---AK-ARGIDVVLIDTAGRSE-TNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-NAI 257 (328)
T ss_dssp CTTCCHHHHHHHHHHH---HH-HHTCSEEEEEECCSCC-TTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-THH
T ss_pred cccCCHHHHHHHHHHH---HH-hccchhhHHhhccchh-HHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-HHH
Confidence 0000000111111100 00 0000 00122233321 1222233343 48999999999999996665 333
Q ss_pred HHHHHHHHHHhhcCCEEEEEecCH---------HHHHhhcceeEEEcCCeE
Q psy10512 266 DACVWLEEELKTYKRILVIISHSQ---------DFLNGVCTNIIHLDKRKL 307 (629)
Q Consensus 266 ~~~~~l~~~L~~~~~tvIivsHd~---------~~l~~~~d~ii~l~~G~i 307 (629)
...+..+-...+.|+|++||.- +.+....-.|.++..|+-
T Consensus 258 --~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 258 --VEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp --HHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred --HHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 2333333345688999999953 344455567888887754
No 251
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.07 E-value=1.2e-13 Score=152.46 Aligned_cols=179 Identities=15% Similarity=0.108 Sum_probs=98.5
Q ss_pred eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhh-----hhh--hchHHHHH
Q psy10512 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT-----CVM--EVDEERVR 173 (629)
Q Consensus 101 ~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~ 173 (629)
.++++++|.+++|+.++|+|||||||||||++|+|+++|..|.+.+.+.. ++.......+. .+. ... ....
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~-E~~~~~~~~v~~~~r~~~~~~~~~-~~~~ 325 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR-EIKLYHENWIAEVTRTGMGEGEID-MYDL 325 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC-CCCCCCSSEEEEECBCCSSSCCBC-HHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc-cccCCCCCeEEEEeecccccCCcC-HHHH
Confidence 46788999999999999999999999999999999999988888775421 11110000000 000 000 0000
Q ss_pred HHHHHHHHhcc------CChhHHHHHHHHHhhhh-------ccChhhHHHHHHHHHH-hCCCCchhh---h---cccCCC
Q psy10512 174 LEKLAEQLVAC------EDDESQEQLMDIYDRLD-------DISADTAEARAANILH-GLGFTKEMQ---Q---KKTKDF 233 (629)
Q Consensus 174 ~~~~~~~~~~~------~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~L~-~lgl~~~~~---~---~~~~~L 233 (629)
+. ..+... ......+ ...++..+. .+....+...+..+.. .+++...+. + .....+
T Consensus 326 l~---~~LR~~PD~iivgEir~~E-~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~ 401 (511)
T 2oap_1 326 LR---AALRQRPDYIIVGEVRGRE-AQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWV 401 (511)
T ss_dssp HH---TTGGGCCSEEEESCCCSTH-HHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEE
T ss_pred HH---HhhccCCCeEEeCCcCHHH-HHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEE
Confidence 00 000000 0000111 111111110 1111222222222221 134432221 1 234568
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEE--EecCHHHHHhhcc
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVI--ISHSQDFLNGVCT 297 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~---~~tvIi--vsHd~~~l~~~~d 297 (629)
|||++||+++| ++ | |+|||+.....+++.|.++ +.|+|+ +||+++++...|+
T Consensus 402 s~G~~~R~~~a----------i~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 402 RGNTRLRRTKE----------VN-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSSCEEEEEEE----------EE-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred eCCCceEEEEE----------EE-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 99999998765 11 7 9999998876666655544 568875 8999999998884
No 252
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=1.2e-10 Score=122.52 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=40.1
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHH-Hhhccee
Q psy10512 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFL-NGVCTNI 299 (629)
Q Consensus 247 L~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l-~~~~d~i 299 (629)
+..+|+|||||||++ ||+.+...|.+.|.+. +.++|++||+++.+ ..+.+|+
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~ 185 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQC 185 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhc
Confidence 788999999999999 9999999999999876 46899999997532 3344444
No 253
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.05 E-value=1.9e-10 Score=118.40 Aligned_cols=131 Identities=18% Similarity=0.089 Sum_probs=87.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhc
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 167 (629)
+.++++++.|+... ++++|+ +|++++|+|+||+||||++..|++.+.+..+.+.+... +... .
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~--d~~~---~-------- 139 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA--DTQR---P-------- 139 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC--CSSC---H--------
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC--Cccc---H--------
Confidence 55677888887543 788888 99999999999999999999999998877777765432 1100 0
Q ss_pred hHHHHHHHHHHHHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
.... ++. .+.+..|+.. ... ....+..+.+|.+|++++
T Consensus 140 -~~~~-------ql~-------------------------------~~~~~~~l~~-~~~--~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 140 -AARE-------QLR-------------------------------LLGEKVGVPV-LEV--MDGESPESIRRRVEEKAR 177 (295)
T ss_dssp -HHHH-------HHH-------------------------------HHHHHHTCCE-EEC--CTTCCHHHHHHHHHHHHH
T ss_pred -hHHH-------HHH-------------------------------HhcccCCeEE-EEc--CCCCCHHHHHHHHHHHHH
Confidence 0000 000 0011123321 000 001233455789999998
Q ss_pred ccCCCEEEEeCC-CCCCCHHHHHHHHHHHhh
Q psy10512 248 YVKPHLLLLDEP-TNHLDLDACVWLEEELKT 277 (629)
Q Consensus 248 ~~~P~iLLLDEP-T~~LD~~~~~~l~~~L~~ 277 (629)
..+++++|+||| ++++|......+......
T Consensus 178 ~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 178 LEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCCccccHHHHHHHHHHhhh
Confidence 899999999999 999999888887776654
No 254
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.05 E-value=2e-13 Score=132.40 Aligned_cols=146 Identities=19% Similarity=0.254 Sum_probs=78.6
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCCC-------------CCccEEEECCceeEEeeccchh---ccc-----CCCCCH
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDLT-------------PSVGMVRKNSHLRFARYHQHLH---ELL-----DLDISP 483 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~~-------------p~~G~i~~~~~~~~~~~~q~~~---~~~-----~~~~~~ 483 (629)
++|++++|+||||||||||+++|+|+++ |..|.+ ++. .|.+.... ... ....+.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~--~g~---~~~~~~~~~~~~~i~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--DGK---DYYFVTREMMQRDIAAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--BTT---TBEECCHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc--CCc---eEEEccHHHHHHHHHcCCCEeeeee
Confidence 5799999999999999999999999886 555552 221 11111100 000 000000
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHH---HHHH-HHccCCCEEEEeCCCCCCCHHHHHHH
Q psy10512 484 LDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRV---VFAY-LAWQAPHLLLLDEPTNHLDMETIDAL 559 (629)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv---~lAr-al~~~p~lLlLDEPT~~LD~~~~~~l 559 (629)
..++ + . ...+.+.++++.-... .. . + .+ .|-++.. ..++ +++.+|.+++|||||+++|.++.+.+
T Consensus 77 ~~n~---~-g-~~~~~i~~~~~~~~~~-~~-~--~-~~-~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i 145 (198)
T 1lvg_A 77 SGNL---Y-G-TSKEAVRAVQAMNRIC-VL-D--V-DL-QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESL 145 (198)
T ss_dssp TTEE---E-E-EEHHHHHHHHHTTCEE-EE-E--C-CH-HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHH
T ss_pred cCcc---C-C-CCHHHHHHHHHcCCcE-EE-E--C-CH-HHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHH
Confidence 0000 0 1 1334555555431110 00 0 0 00 1111111 1455 67888999999999999999888888
Q ss_pred HHHHhhcCceEEEEecCHHHHHhhcCEEEEEe
Q psy10512 560 ADAINDFEGGLVLVSHDFRLINQVAEEIWICE 591 (629)
Q Consensus 560 ~~~l~~~~~~vi~vsHd~~~~~~~~d~i~~l~ 591 (629)
.+.|...... +.++|. . ..+|.|++++
T Consensus 146 ~~~l~~~~~~-~~~a~~--~--~~~D~iivnd 172 (198)
T 1lvg_A 146 AKRLAAARTD-MESSKE--P--GLFDLVIIND 172 (198)
T ss_dssp HHHHHHHHHH-TTGGGS--T--TTCSEEEECS
T ss_pred HHHHHHHHHH-HHHhhc--c--CCceEEEECC
Confidence 8877654322 244562 1 5689887765
No 255
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.04 E-value=2.7e-12 Score=125.30 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=42.1
Q ss_pred CCCChHHHHHHHHH-HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHH-HHhhcce
Q psy10512 231 KDFSGGWRMRIALA-RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDF-LNGVCTN 298 (629)
Q Consensus 231 ~~LSGGqrqRv~LA-raL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~-l~~~~d~ 298 (629)
..+|+||+||+++| ++++.++.++++|||. +..+...--.+|+++++.+. +.+++.|
T Consensus 110 ~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 110 RDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WRDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp TTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GGGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred ccCCCCCceEEcCCCcEEEECCceeccCCch-----------hHHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 45799999999998 8999999998999984 11223333567888888776 5555655
No 256
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.04 E-value=2.4e-10 Score=118.03 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=73.2
Q ss_pred eEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHH
Q psy10512 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEM 500 (629)
Q Consensus 421 sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (629)
+|...+|++++|+|||||||||+++.|++.+.+..|+|.+.+. +.. .. ...+.+
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~--------D~~-------r~-----------~a~eqL 151 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA--------DTF-------RA-----------AAIEQL 151 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE--------CTT-------CH-----------HHHHHH
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc--------ccc-------cH-----------HHHHHH
Confidence 4456788999999999999999999999999998888765321 100 00 011234
Q ss_pred HHHHHHcCCCCcccccCcCcCChhHHHHH---HHHHHHccCCCEEEEeCCCC
Q psy10512 501 RKIIGRYGLTGRQQVCPIRQLSDGQKCRV---VFAYLAWQAPHLLLLDEPTN 549 (629)
Q Consensus 501 ~~~l~~~gl~~~~~~~~~~~LSgGqkqrv---~lAral~~~p~lLlLDEPT~ 549 (629)
..+++.+|++. +..+|+|+.+++ +|++++..+|+++|+|||..
T Consensus 152 ~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 152 KIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 45666777742 236789999999 89999999999999999985
No 257
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.04 E-value=6e-11 Score=124.68 Aligned_cols=121 Identities=17% Similarity=0.120 Sum_probs=71.7
Q ss_pred eEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCCceEEE-eecccCCCCCcchhhhhhhchHHHHHHHHHHHH
Q psy10512 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV-PVPDHIDIF-HLTREMPASDKSALTCVMEVDEERVRLEKLAEQ 180 (629)
Q Consensus 103 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~-p~~g~i~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (629)
++++++. .+|++++|+||||||||||+++|+|... |..|.+.+. +.+..... ...+..+.+ .
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~--~~~i~~v~q-------------~ 269 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTT--AARLYHFPH-------------G 269 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------C--CCEEEECTT-------------S
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceE--EEEEEEECC-------------C
Confidence 5666664 4799999999999999999999999998 999988764 21111000 000000000 0
Q ss_pred HhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHH
Q psy10512 181 LVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247 (629)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 247 (629)
....+.+ ...+ ..+..+...+....+.++++.+|+. .+.+..+.+|| ||+||++||+++
T Consensus 270 ~~l~dtp-gv~e-----~~l~~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 270 GDVIDSP-GVRE-----FGLWHLEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CEEEECH-HHHT-----CCCCCCCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred CEecCcc-cHHH-----hhhcCCCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-HHHHHHHHHhcC
Confidence 0000000 0000 0112233344456677889999996 56788999999 999999999875
No 258
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.02 E-value=3.6e-11 Score=130.60 Aligned_cols=45 Identities=18% Similarity=0.139 Sum_probs=41.8
Q ss_pred eEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 103 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
-+++||++.+|++++|+|+||||||||+++|+|++.|..|.|.+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 468999999999999999999999999999999999888888775
No 259
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.02 E-value=4.3e-10 Score=115.74 Aligned_cols=135 Identities=9% Similarity=0.096 Sum_probs=87.1
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCCCCCcc-EEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHH
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG-MVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKI 503 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G-~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (629)
.+|++++|+|||||||||++..|++.+.++.| .|. ++..+.. ..+. .+....+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~--------lv~~D~~-----r~~a-------------~eqL~~~ 156 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIA--------FITTDTY-----RIAA-------------VEQLKTY 156 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEE--------EEECCCS-----STTH-------------HHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEE--------EEecCcc-----cchH-------------HHHHHHH
Confidence 46899999999999999999999999998778 343 2322211 1111 1223333
Q ss_pred HHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----C-ceEEEE--ecC
Q psy10512 504 IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----E-GGLVLV--SHD 576 (629)
Q Consensus 504 l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~----~-~~vi~v--sHd 576 (629)
.+.+|+.... ..+ +..-+.+|++ +.+|+++|+| |+|+|+.....+.++..-. . ..++++ ||+
T Consensus 157 ~~~~gl~~~~------~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 157 AELLQAPLEV------CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp HTTTTCCCCB------CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred HHhcCCCeEe------cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 4445554211 122 2334566664 4899999999 9999987665554433222 1 234444 999
Q ss_pred HHHHHhhcCEEEEEeCCEEE
Q psy10512 577 FRLINQVAEEIWICENGKVT 596 (629)
Q Consensus 577 ~~~~~~~~d~i~~l~~G~i~ 596 (629)
...+.++|+++..+..+.++
T Consensus 226 ~~~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 226 YEDMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp HHHHHHHTTTTSSSCCCEEE
T ss_pred HHHHHHHHHHHhcCCCCEEE
Confidence 99999999987766667665
No 260
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.98 E-value=6.4e-11 Score=122.43 Aligned_cols=108 Identities=9% Similarity=0.041 Sum_probs=73.0
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE---CCc----------e-eEEeeccchhcc-cC--CCCCHHHH
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK---NSH----------L-RFARYHQHLHEL-LD--LDISPLDY 486 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~~----------~-~~~~~~q~~~~~-~~--~~~~~~~~ 486 (629)
+..|++++|+||||||||||+|+|+ ++.|++|+|.. .|. . .+++++|.+... +. ..+++ +.
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-RE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HH
Confidence 4469999999999999999999999 99999999987 442 0 246776664211 11 23444 33
Q ss_pred Hhhc----------C----CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHH
Q psy10512 487 MLQS----------F----PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY 533 (629)
Q Consensus 487 ~~~~----------~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 533 (629)
+... + +.......+.++|+.++|......+++..|||.+++++.|||
T Consensus 240 l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 240 VRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2111 1 111234568899999999863445677899998889999986
No 261
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.98 E-value=2.3e-09 Score=106.40 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=41.7
Q ss_pred cCCCEEEEeCCCCCC--CHHHH----HHHHHHHhhcCCEEEEEecCHHH--------HHhhcceeEEEcC
Q psy10512 249 VKPHLLLLDEPTNHL--DLDAC----VWLEEELKTYKRILVIISHSQDF--------LNGVCTNIIHLDK 304 (629)
Q Consensus 249 ~~P~iLLLDEPT~~L--D~~~~----~~l~~~L~~~~~tvIivsHd~~~--------l~~~~d~ii~l~~ 304 (629)
.+|+++++|+|++.+ |+... ..|.+.+++.+.|||+++|.... +.++||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 55322 23444556678999999998775 5678999999964
No 262
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.98 E-value=1.4e-09 Score=111.84 Aligned_cols=137 Identities=14% Similarity=0.150 Sum_probs=85.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC-ceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhccCChhH
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD-HIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDES 189 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (629)
.+|++++|+|||||||||++..|++.+.+..| .+.+.. .+... .. .
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~--~D~~r--~~-----------------------------a 149 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT--TDTYR--IA-----------------------------A 149 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE--CCCSS--TT-----------------------------H
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe--cCccc--ch-----------------------------H
Confidence 47999999999999999999999998877667 444322 11100 00 0
Q ss_pred HHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q psy10512 190 QEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACV 269 (629)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~ 269 (629)
.+. ...+.+.+|++.. ...+ +...+.+|++ +.+|+++|+| |+++|+....
T Consensus 150 ~eq-------------------L~~~~~~~gl~~~------~~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~ 199 (296)
T 2px0_A 150 VEQ-------------------LKTYAELLQAPLE------VCYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQ 199 (296)
T ss_dssp HHH-------------------HHHHHTTTTCCCC------BCSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHH
T ss_pred HHH-------------------HHHHHHhcCCCeE------ecCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHH
Confidence 000 0011112333210 0112 2334666765 4899999999 9999987655
Q ss_pred HHHHHHhhc-----CCEEEEE--ecCHHHHHhhcceeEEEcCCeEEEE
Q psy10512 270 WLEEELKTY-----KRILVII--SHSQDFLNGVCTNIIHLDKRKLKYY 310 (629)
Q Consensus 270 ~l~~~L~~~-----~~tvIiv--sHd~~~l~~~~d~ii~l~~G~i~~~ 310 (629)
.+.++.+-. ..+++++ +|+.+.+.++|+++..+..+.++..
T Consensus 200 ~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 200 YIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred HHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 544433221 1235555 8999999999999887777777753
No 263
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.98 E-value=1e-09 Score=113.40 Aligned_cols=99 Identities=17% Similarity=0.104 Sum_probs=70.5
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHhcc
Q psy10512 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVAC 184 (629)
Q Consensus 105 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (629)
.++|...+|++++|+|||||||||++..|++.+.+..+.+.+...+ .. +...
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D--~~----------------r~~a---------- 147 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD--TF----------------RAAA---------- 147 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--TT----------------CHHH----------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc--cc----------------cHHH----------
Confidence 3566678899999999999999999999999988776676653211 00 0000
Q ss_pred CChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHH---HHHHHHccCCCEEEEeCCCC
Q psy10512 185 EDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI---ALARALYVKPHLLLLDEPTN 261 (629)
Q Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv---~LAraL~~~P~iLLLDEPT~ 261 (629)
.+.+..+++.+|++. +..+|||+.+++ +|++++..+|+++|+|||..
T Consensus 148 ------------------------~eqL~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 ------------------------IEQLKIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ------------------------HHHHHHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ------------------------HHHHHHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 001112233445531 346789999999 99999999999999999974
No 264
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.98 E-value=5.9e-13 Score=129.12 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=40.8
Q ss_pred HHH-HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcceeEEEcC
Q psy10512 243 LAR-ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDK 304 (629)
Q Consensus 243 LAr-aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ii~l~~ 304 (629)
.|+ +++.+|.+++|||||+++|.++...+.+.|.....- +.++|.. ..||+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~~----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKEP----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGST----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhcc----CCceEEEECCC
Confidence 566 788899999999999999988877777766543211 2445621 56899887763
No 265
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.96 E-value=3e-12 Score=136.37 Aligned_cols=151 Identities=14% Similarity=0.130 Sum_probs=99.0
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHc------------CCCCCccEEEECCce------------e---EEeeccchhc
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYG------------DLTPSVGMVRKNSHL------------R---FARYHQHLHE 475 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G------------~~~p~~G~i~~~~~~------------~---~~~~~q~~~~ 475 (629)
.+..|.+++|+|+||||||||+++|+| .+.|+.|.|.+.+.. . ..++.+...
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG- 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG- 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG-
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc-
Confidence 456899999999999999999999999 667999999887521 0 112221111
Q ss_pred ccCCCCCHHHHHhhcCCChhhHHHHHHHHH-------HcCCCCcccccCcCcCChhHHHHHHHHHHHccCC--CEEEEeC
Q psy10512 476 LLDLDISPLDYMLQSFPEVKDREEMRKIIG-------RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP--HLLLLDE 546 (629)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p--~lLlLDE 546 (629)
+....+..+.+ ...+...+. -+...+ ...+..+||+. +| +++++||
T Consensus 95 -l~~~~s~~e~L---------~~~fl~~ir~~d~il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 95 -LTKGASTGVGL---------GNAFLSHVRAVDAIYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp -GCCCCCSSSSS---------CHHHHHHHTTCSEEEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred -cccCCcHHHHH---------HHHHHHHHHHHHHHHHHHhccc---cceeeeecccc------------Ccchhhhhchh
Confidence 11111110000 001111111 111111 23344567653 89 9999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc-C---ceEEEEecCHHHHHhhcCEEE-EEeCC-EEEEecCCH
Q psy10512 547 PTNHLDMETIDALADAINDF-E---GGLVLVSHDFRLINQVAEEIW-ICENG-KVTKWEGNI 602 (629)
Q Consensus 547 PT~~LD~~~~~~l~~~l~~~-~---~~vi~vsHd~~~~~~~~d~i~-~l~~G-~i~~~~g~~ 602 (629)
|+.++|+...+..++.+... . .++ ++|+...+..+|+++. +|++| +++ +.|++
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~-~~~~~ 208 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPI-RKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCG-GGSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCcee-ecCCC
Confidence 99999999999988888776 3 343 3999999999999999 89999 775 34554
No 266
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.95 E-value=2e-11 Score=125.30 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=33.1
Q ss_pred cccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q psy10512 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267 (629)
Q Consensus 228 ~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~ 267 (629)
.+...+||||+||+.+|++...+|+|||+||||++||+..
T Consensus 130 ~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 130 KYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred cCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 3457899999999999844333999999999999999853
No 267
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.95 E-value=4.4e-12 Score=131.63 Aligned_cols=58 Identities=24% Similarity=0.277 Sum_probs=53.3
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEE-------------------eCCCEEEEECCCCCchHHHHHHHHcCCC--CCccE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGI-------------------DLDTRLALVGPNGAGKSTLLNLIYGDLT--PSVGM 457 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i-------------------~~Ge~i~ivG~NGsGKSTLlk~l~G~~~--p~~G~ 457 (629)
+|+++||++.|. +++++++|.+ .+|+++||+||||||||||+++|+|++. |++|.
T Consensus 37 ~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 37 DLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred ccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 578999999993 3789999988 8999999999999999999999999998 99999
Q ss_pred EEE
Q psy10512 458 VRK 460 (629)
Q Consensus 458 i~~ 460 (629)
|.+
T Consensus 113 i~v 115 (308)
T 1sq5_A 113 VEL 115 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
No 268
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.94 E-value=4.5e-12 Score=119.85 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=29.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC---CCceEEE
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNREVPV---PDHIDIF 147 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~~~p~---~g~i~i~ 147 (629)
++++|+|+||||||||+++|+|++.|. .|.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 589999999999999999999998886 5666554
No 269
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.93 E-value=3.9e-10 Score=122.83 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=56.3
Q ss_pred cCcCChhHHHHHHHHHHH--cc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHH
Q psy10512 518 IRQLSDGQKCRVVFAYLA--WQ---------------APHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLI 580 (629)
Q Consensus 518 ~~~LSgGqkqrv~lAral--~~---------------~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~ 580 (629)
.+.+||||+|-.-+|.+. ++ .-.+++|||. +-+|.+.+...++++++++--+|++|=+ .+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~--~i 453 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE--NI 453 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS--SC
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc--hh
Confidence 567999999964444332 22 1258999999 9999999999999999999999999988 56
Q ss_pred HhhcCEEEEEe
Q psy10512 581 NQVAEEIWICE 591 (629)
Q Consensus 581 ~~~~d~i~~l~ 591 (629)
..++|.++.+-
T Consensus 454 ~p~v~~~~~~~ 464 (483)
T 3euj_A 454 SPERGTTYKLV 464 (483)
T ss_dssp CCSSSEEEECC
T ss_pred hhccCceEEEE
Confidence 66778887654
No 270
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.92 E-value=1.4e-11 Score=125.55 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=87.1
Q ss_pred CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHH
Q psy10512 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLA 178 (629)
Q Consensus 99 ~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (629)
...+|++++|.+++| ++|+||||||||||+++|+|...+ +.+.+.+ .++.... .......+..++
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g--~~l~~~~---------~~~~~~~i~~vf 96 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKG--PELLNMY---------VGESERAVRQVF 96 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEET--TTTCSST---------THHHHHHHHHHH
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEc--HHHHhhh---------hhHHHHHHHHHH
Confidence 445889999999999 999999999999999999998654 4444432 2221110 001112222333
Q ss_pred HHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeC
Q psy10512 179 EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDE 258 (629)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDE 258 (629)
+......+.. .+.+.+..+........ .+......++.+.+|||||+||+.|++|+..+|++| ||
T Consensus 97 ~~a~~~~p~i------~~~Deid~~~~~r~~~~-------~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~ 161 (274)
T 2x8a_A 97 QRAKNSAPCV------IFFDEVDALCPRRSDRE-------TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DP 161 (274)
T ss_dssp HHHHHTCSEE------EEEETCTTTCC----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CH
T ss_pred HHHHhcCCCe------EeeehhhhhhcccCCCc-------chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CH
Confidence 2211110000 00111111110000000 011123456778899999999999999999999975 99
Q ss_pred CCC------------CCCHHHHHHHHHHHhh
Q psy10512 259 PTN------------HLDLDACVWLEEELKT 277 (629)
Q Consensus 259 PT~------------~LD~~~~~~l~~~L~~ 277 (629)
|+. ..|...+..+++.+..
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 863 3477888888876643
No 271
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.92 E-value=1.9e-12 Score=131.99 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=84.0
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------eEEeeccchhcccCCCCCHH
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------RFARYHQHLHELLDLDISPL 484 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~~~~~~q~~~~~~~~~~~~~ 484 (629)
+|++++|.++.| ++|+||||||||||+++|+|.+.+ |.|.+++.. .+++++|.... ....+++.
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~-~~p~i~~~ 109 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKN-SAPCVIFF 109 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHH-TCSEEEEE
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHh-cCCCeEee
Confidence 688899999999 999999999999999999999887 677776531 12222222110 01111111
Q ss_pred HHHhhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC------------CCC
Q psy10512 485 DYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN------------HLD 552 (629)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~------------~LD 552 (629)
+.+...... ..... .+.......+.+.+|||||+||+.|++|+..+|++| |||+. -.|
T Consensus 110 Deid~~~~~-r~~~~-------~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~ 179 (274)
T 2x8a_A 110 DEVDALCPR-RSDRE-------TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPP 179 (274)
T ss_dssp ETCTTTCC-----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCC
T ss_pred ehhhhhhcc-cCCCc-------chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcC
Confidence 111111110 00000 011111223456789999999999999999999985 99964 336
Q ss_pred HHHHHHHHHHHhh
Q psy10512 553 METIDALADAIND 565 (629)
Q Consensus 553 ~~~~~~l~~~l~~ 565 (629)
...+..+++.+..
T Consensus 180 ~~~r~~il~~~~~ 192 (274)
T 2x8a_A 180 PADRLAILKTITK 192 (274)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 7788888777653
No 272
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.90 E-value=1e-08 Score=101.66 Aligned_cols=56 Identities=11% Similarity=-0.009 Sum_probs=41.0
Q ss_pred cCCCEEEEeCCCCCC--CHHHH----HHHHHHHhhcCceEEEEecCHHH--------HHhhcCEEEEEeC
Q psy10512 537 QAPHLLLLDEPTNHL--DMETI----DALADAINDFEGGLVLVSHDFRL--------INQVAEEIWICEN 592 (629)
Q Consensus 537 ~~p~lLlLDEPT~~L--D~~~~----~~l~~~l~~~~~~vi~vsHd~~~--------~~~~~d~i~~l~~ 592 (629)
.+|+++++|+|+..+ |+... ..+.+.+++.+.+||+++|.... +.++||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 55333 23344445667899999998775 5678999999864
No 273
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.87 E-value=2.8e-09 Score=116.39 Aligned_cols=175 Identities=10% Similarity=0.061 Sum_probs=103.4
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCcc-EEEECC-ceeEEeeccchhcccCCCCCHHHHHhhcCCC
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG-MVRKNS-HLRFARYHQHLHELLDLDISPLDYMLQSFPE 493 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G-~i~~~~-~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 493 (629)
.|+++...+.+|+++.|.|++|+|||||+..|++...+..| .|.+.. ......+.+.+. .......... +..+...
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~-~~~~~~~~~~-l~~g~l~ 269 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRML-CAEGNINAQN-LRTGKLT 269 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHH-HHHHTCCHHH-HHTSCCC
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH-HHHcCCCHHH-HhcCCCC
Confidence 57888878999999999999999999999999987766444 332211 000000000000 0000111111 1111111
Q ss_pred hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH--------HHHHHHHHHH
Q psy10512 494 VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW--QAPHLLLLDEPTNHLDM--------ETIDALADAI 563 (629)
Q Consensus 494 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~--~~p~lLlLDEPT~~LD~--------~~~~~l~~~l 563 (629)
......+...++.++....... ....+|.++.+ ..++.+. .+|+++|+|+++...+. .....+...|
T Consensus 270 ~~~~~~~~~a~~~l~~~~l~i~-d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~L 346 (454)
T 2r6a_A 270 PEDWGKLTMAMGSLSNAGIYID-DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSL 346 (454)
T ss_dssp HHHHHHHHHHHHHHHSSCEEEE-CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEE-CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHH
Confidence 1223344555555544332222 23579999987 4555554 68999999999998743 2334444445
Q ss_pred h----hcCceEEEEec---------C--HH--------HHHhhcCEEEEEeCCEE
Q psy10512 564 N----DFEGGLVLVSH---------D--FR--------LINQVAEEIWICENGKV 595 (629)
Q Consensus 564 ~----~~~~~vi~vsH---------d--~~--------~~~~~~d~i~~l~~G~i 595 (629)
+ +++.+||+++| | +. .+.+.||.|++|+.+..
T Consensus 347 k~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 347 KALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 4 45779999999 3 22 57788999999986543
No 274
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.86 E-value=4.3e-10 Score=123.41 Aligned_cols=175 Identities=15% Similarity=0.118 Sum_probs=102.0
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhC--CCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHHHh
Q psy10512 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLGN--REVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLV 182 (629)
Q Consensus 105 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g--~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (629)
.+++.+..+..+.|.|++||||||++++|.. +..+.++.+.+...+... .....+..+..... .
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~--~el~~~~~lPhl~~------------~ 224 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM--LELSVYEGIPHLLT------------E 224 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS--SGGGGGTTCTTBSS------------S
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch--hhhhhhccCCcccc------------e
Confidence 4788889999999999999999999999875 556678888876543211 00000000000000 0
Q ss_pred ccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhh---cccCCCChHHHHHH----------HHHHHHcc
Q psy10512 183 ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ---KKTKDFSGGWRMRI----------ALARALYV 249 (629)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~---~~~~~LSGGqrqRv----------~LAraL~~ 249 (629)
...+. ........++ ..++++|. +++..+|+.. +.. +....+||||+|+. .+|+++..
T Consensus 225 Vvtd~---~~a~~~L~~~----~~EmerR~-~ll~~~Gv~~-i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~ 295 (512)
T 2ius_A 225 VVTDM---KDAANALRWC----VNEMERRY-KLMSALGVRN-LAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKK 295 (512)
T ss_dssp CBCSH---HHHHHHHHHH----HHHHHHHH-HHHHHTTCSS-HHHHHHHHHHHHHTTCCCBCTTC---------CCBCCC
T ss_pred eecCH---HHHHHHHHHH----HHHHHHHH-HHHHHcCCcc-HHHHHHHHHHHhhcCCcccccccccccchhcccccccc
Confidence 00010 0001111111 12344453 5777788752 221 22346888987752 35677788
Q ss_pred CCC-EEEEeCCCCCCCHHH--HHHHHHHH----hhcCCEEEEEecCHH-------HHHhhcceeEEE
Q psy10512 250 KPH-LLLLDEPTNHLDLDA--CVWLEEEL----KTYKRILVIISHSQD-------FLNGVCTNIIHL 302 (629)
Q Consensus 250 ~P~-iLLLDEPT~~LD~~~--~~~l~~~L----~~~~~tvIivsHd~~-------~l~~~~d~ii~l 302 (629)
.|. ++++||+++.+|... ...++..| +.+|.++|++||++. ...++.+||++-
T Consensus 296 lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp CCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred CCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 898 899999999988432 22222223 234679999999987 566777777653
No 275
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.86 E-value=6.6e-10 Score=121.06 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=44.9
Q ss_pred eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe
Q psy10512 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~ 148 (629)
..+|+++||+|++ ++++|+|||||||||||++|+|++.|+.|++.+.+
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 4589999999999 99999999999999999999999999999988754
No 276
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.85 E-value=2.8e-11 Score=128.98 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=56.8
Q ss_pred cccCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcceeE-
Q psy10512 228 KKTKDFSGGWRMRIALARALYVKP--HLLLLDEPTNHLDLDACVWLEEELKTY----KRILVIISHSQDFLNGVCTNII- 300 (629)
Q Consensus 228 ~~~~~LSGGqrqRv~LAraL~~~P--~iLLLDEPT~~LD~~~~~~l~~~L~~~----~~tvIivsHd~~~l~~~~d~ii- 300 (629)
..+..+||+. +| +++++|||++.+|+......++.+... +.|++ +|+...+..+|+++.
T Consensus 129 ~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~ 194 (392)
T 1ni3_A 129 AEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQ 194 (392)
T ss_dssp TCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHH
T ss_pred ceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHH
Confidence 4455577753 99 999999999999999998888877665 34543 999999999999999
Q ss_pred EEcCC-eEEEE
Q psy10512 301 HLDKR-KLKYY 310 (629)
Q Consensus 301 ~l~~G-~i~~~ 310 (629)
+|++| +++..
T Consensus 195 ~L~~G~~~~~~ 205 (392)
T 1ni3_A 195 YLTETKQPIRK 205 (392)
T ss_dssp HHHTTCSCGGG
T ss_pred HhccCCceeec
Confidence 99999 87643
No 277
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.82 E-value=2.2e-09 Score=117.28 Aligned_cols=178 Identities=11% Similarity=0.071 Sum_probs=103.0
Q ss_pred eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC-ceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHH
Q psy10512 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD-HIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLA 178 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (629)
...|+++..-+.+|+++.|.|++|+|||||+..|++...+..| .+.+. ..+.+. .....++..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~--s~E~s~------------~~l~~r~~~-- 253 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF--SLEMSA------------QQLVMRMLC-- 253 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE--ESSSCH------------HHHHHHHHH--
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE--ECCCCH------------HHHHHHHHH--
Confidence 3568888888999999999999999999999998876544334 34332 222211 000111100
Q ss_pred HHHhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHc--cCCCEEEE
Q psy10512 179 EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALY--VKPHLLLL 256 (629)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~--~~P~iLLL 256 (629)
.. ... +. ..+ .. ..+.. ....++.+.+..++... +.-.....+|+++.+ +.++.+. .+|+++++
T Consensus 254 ~~-~~~-~~---~~l---~~--g~l~~-~~~~~~~~a~~~l~~~~-l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livI 319 (454)
T 2r6a_A 254 AE-GNI-NA---QNL---RT--GKLTP-EDWGKLTMAMGSLSNAG-IYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVI 319 (454)
T ss_dssp HH-HTC-CH---HHH---HT--SCCCH-HHHHHHHHHHHHHHSSC-EEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEE
T ss_pred HH-cCC-CH---HHH---hc--CCCCH-HHHHHHHHHHHHHhcCC-EEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEE
Confidence 00 000 00 000 00 11111 11223334444333221 112224679999886 5566665 68999999
Q ss_pred eCCCCCCCH--------HHHHHHHHHHh----hcCCEEEEEec---------C--HH--------HHHhhcceeEEEcCC
Q psy10512 257 DEPTNHLDL--------DACVWLEEELK----TYKRILVIISH---------S--QD--------FLNGVCTNIIHLDKR 305 (629)
Q Consensus 257 DEPT~~LD~--------~~~~~l~~~L~----~~~~tvIivsH---------d--~~--------~l~~~~d~ii~l~~G 305 (629)
|+|+...+. .....+...|+ +++.+||+++| | +. .+...||.|++|..+
T Consensus 320 D~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 320 DYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp ECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred ccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 999998843 23344444443 56899999999 3 22 467789999999876
Q ss_pred eE
Q psy10512 306 KL 307 (629)
Q Consensus 306 ~i 307 (629)
..
T Consensus 400 ~~ 401 (454)
T 2r6a_A 400 DY 401 (454)
T ss_dssp TC
T ss_pred cc
Confidence 53
No 278
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.80 E-value=2.3e-11 Score=127.67 Aligned_cols=172 Identities=13% Similarity=0.150 Sum_probs=94.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCC-------CEEEEECCCCCcHHHHHHHHhCCC----CCCCCceEEEeecccCCCC
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCG-------RRYGLLGLNGSGKSTLLAVLGNRE----VPVPDHIDIFHLTREMPAS 156 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~G-------e~~~liG~NGsGKSTLlk~L~g~~----~p~~g~i~i~~~~~~~~~~ 156 (629)
++.++++..||+..+++++++.+.+| +.++|+||||+|||||+++|+|.+ .+.+|.+...
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--------- 89 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--------- 89 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---------
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---------
Confidence 56678888888888999999999887 899999999999999999999976 2333322110
Q ss_pred CcchhhhhhhchHHHHHHHHHH-HHHhccC-----ChhHHHHHHHHHhhhhccC----hhhHHHHHHHHHHhCCCCchhh
Q psy10512 157 DKSALTCVMEVDEERVRLEKLA-EQLVACE-----DDESQEQLMDIYDRLDDIS----ADTAEARAANILHGLGFTKEMQ 226 (629)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~L~~lgl~~~~~ 226 (629)
...+ ...+.... ..+...+ .....+.+....... ... .......+...+..++|.. .
T Consensus 90 -~~~l---------~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~--a 156 (334)
T 1in4_A 90 -QGDM---------AAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG--A 156 (334)
T ss_dssp -HHHH---------HHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTS-CCCC---------------CCCEEEE--E
T ss_pred -HHHH---------HHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE--e
Confidence 0000 00000000 0000000 111111111111100 000 1122234555666677742 5
Q ss_pred hcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcce
Q psy10512 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTN 298 (629)
Q Consensus 227 ~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~d~ 298 (629)
...+..||+|++||+.++ .+||+.+...+.++|++... ..-++|+.+.+..+|++
T Consensus 157 t~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~-~~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 157 TTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAAS-LMDVEIEDAAAEMIAKR 211 (334)
T ss_dssp ESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHH-HTTCCBCHHHHHHHHHT
T ss_pred cCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHH-HcCCCcCHHHHHHHHHh
Confidence 667789999999998654 66777677767666654310 01147898888888775
No 279
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.79 E-value=3.7e-10 Score=116.63 Aligned_cols=100 Identities=13% Similarity=0.016 Sum_probs=59.0
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE---CCce-----------eEEeeccchhc-------------
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK---NSHL-----------RFARYHQHLHE------------- 475 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~~~-----------~~~~~~q~~~~------------- 475 (629)
++..|++++|+|||||||||||++|+|+..|++|.|.+ .|.. .+++++|.+..
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 45579999999999999999999999999999999987 4321 24566665421
Q ss_pred -ccCCCCCHHHHHhhc--CCChhhHHHHHHHHHHcCCCCcccccCcCcCCh
Q psy10512 476 -LLDLDISPLDYMLQS--FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSD 523 (629)
Q Consensus 476 -~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 523 (629)
.+..++++ +++... .........+.++|+.+||......+++..||+
T Consensus 245 ~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 11223333 322110 111123456889999999963344456677774
No 280
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.77 E-value=3.5e-10 Score=124.12 Aligned_cols=167 Identities=14% Similarity=0.083 Sum_probs=96.3
Q ss_pred eeeEEEeCCCEEEEECCCCCchHHHHHHHHc--CCCCCccEEEEC---Cce-eEEeeccchhcccC-CCCCHHH---HHh
Q psy10512 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYG--DLTPSVGMVRKN---SHL-RFARYHQHLHELLD-LDISPLD---YML 488 (629)
Q Consensus 419 ~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G--~~~p~~G~i~~~---~~~-~~~~~~q~~~~~~~-~~~~~~~---~~~ 488 (629)
.+++++..+..+.|+|++||||||+++.|.. +..++.|.+.+. ... .+..+...++ ... .-..+.+ .+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPh-l~~~Vvtd~~~a~~~L~ 237 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPH-LLTEVVTDMKDAANALR 237 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTT-BSSSCBCSHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCc-ccceeecCHHHHHHHHH
Confidence 3678888999999999999999999999876 555666666542 110 0111111000 000 0011111 110
Q ss_pred hcCCChhhHHHHHHHHHHcCCCCcccc--cCcCcCChhHHHHH----------HHHHHHccCCC-EEEEeCCCCCCCHHH
Q psy10512 489 QSFPEVKDREEMRKIIGRYGLTGRQQV--CPIRQLSDGQKCRV----------VFAYLAWQAPH-LLLLDEPTNHLDMET 555 (629)
Q Consensus 489 ~~~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~~LSgGqkqrv----------~lAral~~~p~-lLlLDEPT~~LD~~~ 555 (629)
. . ....+++ .+++..+|+...... +....+|+||+|+. .+++++...|. ++++||++..+|...
T Consensus 238 ~-~-~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~ 314 (512)
T 2ius_A 238 W-C-VNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVG 314 (512)
T ss_dssp H-H-HHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHH
T ss_pred H-H-HHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhh
Confidence 0 0 0011223 367788888643221 11236899998753 35566777888 899999999988432
Q ss_pred --HHHHHHHHh----hcCceEEEEecCHH-------HHHhhcCEEEE
Q psy10512 556 --IDALADAIN----DFEGGLVLVSHDFR-------LINQVAEEIWI 589 (629)
Q Consensus 556 --~~~l~~~l~----~~~~~vi~vsHd~~-------~~~~~~d~i~~ 589 (629)
.+.++..|. .++.++|++||+.. ...++.+||.+
T Consensus 315 ~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 315 KKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 222222232 23557999999987 55677778765
No 281
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.77 E-value=2.2e-09 Score=125.14 Aligned_cols=33 Identities=30% Similarity=0.569 Sum_probs=29.7
Q ss_pred eeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 420 LEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 420 vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.++.+.++..+.|+||+|+|||||.++|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 366788999999999999999999999999874
No 282
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.75 E-value=1.5e-11 Score=128.98 Aligned_cols=162 Identities=18% Similarity=0.214 Sum_probs=96.7
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCC-------CEEEEECCCCCchHHHHHHHHcCC----CCCccEEEECC------
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLD-------TRLALVGPNGAGKSTLLNLIYGDL----TPSVGMVRKNS------ 462 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~G-------e~i~ivG~NGsGKSTLlk~l~G~~----~p~~G~i~~~~------ 462 (629)
++.++++..|+. ..+++++++.|..| +.++|+||||+|||||+++|+|.+ .|++|.+...+
T Consensus 19 lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 19 LRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp TSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred cCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 444566666643 23789999999876 899999999999999999999998 67777664322
Q ss_pred -----ceeEEeeccchhcccCCCCCHHHHHhh---cCC------ChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHH
Q psy10512 463 -----HLRFARYHQHLHELLDLDISPLDYMLQ---SFP------EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCR 528 (629)
Q Consensus 463 -----~~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr 528 (629)
...+.++.+... +. .+..+.+.. .+. .......+...+..+++.. ...++..||+|++||
T Consensus 97 ~~~~~~~~v~~iDE~~~--l~--~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~~l~sR 170 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHR--LN--KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSSPLRSR 170 (334)
T ss_dssp HHHCCTTCEEEEETGGG--CC--HHHHHHHHHHHHTSCCCC---------------CCCEEEE--EESCGGGSCHHHHTT
T ss_pred HHHccCCCEEEEcchhh--cC--HHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCcccCCHHHHHh
Confidence 123445544321 11 123332211 110 0011223344555566643 234568999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHHHhhcCE
Q psy10512 529 VVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEE 586 (629)
Q Consensus 529 v~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~~~~~d~ 586 (629)
+.++ .+||+.+.+.+.+.|.+.... .-++|+.+.+..+|++
T Consensus 171 ~~l~----------------~~Ld~~~~~~l~~iL~~~~~~-~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 171 FGII----------------LELDFYTVKELKEIIKRAASL-MDVEIEDAAAEMIAKR 211 (334)
T ss_dssp CSEE----------------EECCCCCHHHHHHHHHHHHHH-TTCCBCHHHHHHHHHT
T ss_pred cCce----------------eeCCCCCHHHHHHHHHHHHHH-cCCCcCHHHHHHHHHh
Confidence 8655 677777777777777654211 1147888887777764
No 283
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.74 E-value=1.3e-08 Score=97.40 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=33.1
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 527 CRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND 565 (629)
Q Consensus 527 qrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~ 565 (629)
+.+.+|++++.+|+++++| ||++|..+++.+.+.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999988754
No 284
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.74 E-value=4.1e-08 Score=103.26 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=48.3
Q ss_pred HHHHHHHHHccC--CCEEEEeCCCCCC----------CH----HH---HHHHH---HHHhhcCCEEEEEecCHH------
Q psy10512 239 MRIALARALYVK--PHLLLLDEPTNHL----------DL----DA---CVWLE---EELKTYKRILVIISHSQD------ 290 (629)
Q Consensus 239 qRv~LAraL~~~--P~iLLLDEPT~~L----------D~----~~---~~~l~---~~L~~~~~tvIivsHd~~------ 290 (629)
+-+.++++++.. |+++++|||++.+ |+ .. ...+. ..+++++.|||+++|-..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678878754 9999999999998 32 11 12222 233667899999999653
Q ss_pred ----------HHHhhcceeEEEcCCeEE
Q psy10512 291 ----------FLNGVCTNIIHLDKRKLK 308 (629)
Q Consensus 291 ----------~l~~~~d~ii~l~~G~i~ 308 (629)
.+..+||.++.++.+++.
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEeeee
Confidence 266789999988876654
No 285
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.69 E-value=6.4e-10 Score=114.88 Aligned_cols=127 Identities=14% Similarity=0.052 Sum_probs=70.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe-ecccCCCCCcc----hhhhhhhchHHHHHHHHHHHHHhc
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH-LTREMPASDKS----ALTCVMEVDEERVRLEKLAEQLVA 183 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 183 (629)
++..|++++|+||||||||||+++|+ +..|..|.+.+.. .+.+....... ....+.+.+..+ .+..
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~--------~~~l 231 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS--------KVEA 231 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCS--------SCCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC--------cCcc
Confidence 44579999999999999999999999 9999999998711 11111111000 011111100000 0000
Q ss_pred cCChhHHHHHHHHHh-------hhhc-cChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHH
Q psy10512 184 CEDDESQEQLMDIYD-------RLDD-ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245 (629)
Q Consensus 184 ~~~~~~~~~~~~~~~-------~l~~-~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 245 (629)
++. .+.+++...+. .+.. ....+...++.++|+.++|.....++++..|||.+++++.|||
T Consensus 232 ~~~-lt~e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 232 TMF-VKPREVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGT-SCGGGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred ccc-CCHHHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000 00011100000 1111 1222334578899999999855778899999999999999986
No 286
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.69 E-value=2.4e-10 Score=118.43 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=53.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEE-------------------eCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCCceE
Q psy10512 87 DVKIANFSITFHGCELLQDTMLEL-------------------NCGRRYGLLGLNGSGKSTLLAVLGNREV--PVPDHID 145 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i-------------------~~Ge~~~liG~NGsGKSTLlk~L~g~~~--p~~g~i~ 145 (629)
.|+++||++.|+ +++++++|.+ .+|+++||+||||||||||+++|+|++. |+.|.+.
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 388999999994 7899999988 9999999999999999999999999887 8889887
Q ss_pred EE
Q psy10512 146 IF 147 (629)
Q Consensus 146 i~ 147 (629)
+.
T Consensus 115 vi 116 (308)
T 1sq5_A 115 LI 116 (308)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 287
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.68 E-value=8.9e-10 Score=113.59 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=56.7
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE---CCc--------e--eEEeeccchhccc-CC-CCCHHHHHh
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK---NSH--------L--RFARYHQHLHELL-DL-DISPLDYML 488 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~~--------~--~~~~~~q~~~~~~-~~-~~~~~~~~~ 488 (629)
+.+|++++|+||||||||||+++|+|+..|..|.|.. .|. . ..+++.|.+.... .+ .+++ +.+.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~ 248 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELG 248 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHG
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHH
Confidence 4579999999999999999999999999999999986 331 0 1466666643211 11 3455 4331
Q ss_pred hcC----------------CChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHH
Q psy10512 489 QSF----------------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCR 528 (629)
Q Consensus 489 ~~~----------------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr 528 (629)
..+ ........+.++++.++|....... ...|+.|++||
T Consensus 249 ~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~-y~~lls~~~~~ 303 (307)
T 1t9h_A 249 YTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDH-YVEFMTEIKDR 303 (307)
T ss_dssp GGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHH-HHHHHHHHHTT
T ss_pred HHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHH-HHHHHHHHhhc
Confidence 111 1112234688999999997543333 35677787763
No 288
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.65 E-value=5.9e-09 Score=103.07 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=22.9
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHH-cCCC
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY-GDLT 452 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~-G~~~ 452 (629)
..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 478999999999999999999999999999999 9983
No 289
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.65 E-value=7.6e-09 Score=102.26 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=22.9
Q ss_pred eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-CCCC
Q psy10512 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG-NREV 138 (629)
Q Consensus 101 ~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~-g~~~ 138 (629)
+..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4678999999999999999999999999999999 9874
No 290
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.62 E-value=1.4e-07 Score=99.20 Aligned_cols=138 Identities=12% Similarity=0.155 Sum_probs=81.1
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHH
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRK 502 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (629)
.+++|+++.|.||||||||||+..++.......|.+. |+... ......
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vl--------yi~~E------~~~~~~------------------ 104 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAA--------FIDAE------HALDPE------------------ 104 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE--------EEESS------CCCCHH------------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE--------EEECC------CCcCHH------------------
Confidence 5789999999999999999998888765443333332 22211 000000
Q ss_pred HHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccC--CCEEEEeCCCCCC----------CH----H---HHHHHHH--
Q psy10512 503 IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA--PHLLLLDEPTNHL----------DM----E---TIDALAD-- 561 (629)
Q Consensus 503 ~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~--p~lLlLDEPT~~L----------D~----~---~~~~l~~-- 561 (629)
...++|+...... .....+.. +-+.++++++.. |++||+|||++.+ |. . ..+.+.+
T Consensus 105 ~a~~lG~~~~~l~-i~~~~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~ 181 (349)
T 2zr9_A 105 YAKKLGVDTDSLL-VSQPDTGE--QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMT 181 (349)
T ss_dssp HHHHTTCCGGGCE-EECCSSHH--HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHeE-EecCCCHH--HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHH
Confidence 1233444311100 01112332 345677777654 9999999999998 32 1 1122222
Q ss_pred -HHhhcCceEEEEecCHH----------------HHHhhcCEEEEEeCCEE
Q psy10512 562 -AINDFEGGLVLVSHDFR----------------LINQVAEEIWICENGKV 595 (629)
Q Consensus 562 -~l~~~~~~vi~vsHd~~----------------~~~~~~d~i~~l~~G~i 595 (629)
.+++++.+||+++|-.. .+..+||.++.++.+.+
T Consensus 182 ~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 182 GALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp HHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred HHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeee
Confidence 23566789999999643 25678999888876544
No 291
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.59 E-value=2.2e-10 Score=116.76 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=42.4
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 91 ANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 91 ~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
+++.+.|+...++++++|++++| ++|+||||||||||+++|++... .+.+.+.
T Consensus 53 ~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~ 105 (278)
T 1iy2_A 53 KEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 105 (278)
T ss_dssp HHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEec
Confidence 34445565667899999999999 99999999999999999999763 4555553
No 292
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.58 E-value=3e-09 Score=106.61 Aligned_cols=51 Identities=24% Similarity=0.377 Sum_probs=36.0
Q ss_pred eEEEEeE-EEEe-CCeeeeEeeeEEEeC---CCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 87 DVKIANF-SITF-HGCELLQDTMLELNC---GRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 87 ~i~i~nl-s~~y-~~~~~L~~vsl~i~~---Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.|+++|+ +++| ++..+|+|+||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5999999 9999 777899999999999 9999999999999999999998853
No 293
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.57 E-value=1.6e-10 Score=115.98 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=41.7
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 91 ANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 91 ~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
+++.+.|++..+++++++++++| ++|+||||||||||+++|++... .+.+.+.
T Consensus 29 ~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~ 81 (254)
T 1ixz_A 29 KEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 81 (254)
T ss_dssp HHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEee
Confidence 34444455556889999999999 99999999999999999999763 4555543
No 294
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.57 E-value=8.4e-06 Score=100.30 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=27.4
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTP 453 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p 453 (629)
.+.+|+.+.|.||+|+|||||+..++.....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence 4899999999999999999999998876544
No 295
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.54 E-value=9.4e-08 Score=91.76 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=30.6
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 529 VVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND 565 (629)
Q Consensus 529 v~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~ 565 (629)
...|++++.+|+++++| ||++|..+++.+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45688999999999999 999999999988887754
No 296
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.53 E-value=2e-09 Score=106.20 Aligned_cols=55 Identities=25% Similarity=0.352 Sum_probs=42.5
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCc
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH 463 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~ 463 (629)
.|+++|+...|+ . +|++.+ ++++|+|||||||||||++|+|++.|++|.|.+++.
T Consensus 9 ~l~l~~~~~~~~--------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~ 63 (227)
T 1qhl_A 9 SLTLINWNGFFA--------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNT 63 (227)
T ss_dssp EEEEEEETTEEE--------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-----
T ss_pred EEEEEeeecccC--------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCE
Confidence 578888865552 1 566666 899999999999999999999999999999987764
No 297
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.53 E-value=5.9e-10 Score=118.25 Aligned_cols=130 Identities=12% Similarity=0.079 Sum_probs=78.7
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE-CC-----ceeEEeeccchhcccCCCCCHHHHHhh
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK-NS-----HLRFARYHQHLHELLDLDISPLDYMLQ 489 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~-~~-----~~~~~~~~q~~~~~~~~~~~~~~~~~~ 489 (629)
+++++++.+++|++++|+||||||||||+++|+|.. .|.+.. .. +..+++++|.... +..+.+....+..
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~~~~~~~~~~lg~~~q~~~~-l~dd~~~~~~~~r 233 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNLPLDRLNFELGVAIDQFLV-VFEDVKGTGGESR 233 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSCTTTHHHHHGGGTTCSCE-EETTCCCSTTTTT
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEeccchhHHHHHHHhcchhHH-HHHHHHHHHHHHh
Confidence 789999999999999999999999999999999954 677765 21 1123333433211 1111111111000
Q ss_pred cCCChh---hHHHHHHHHHH---------------cCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE-EeCCCC
Q psy10512 490 SFPEVK---DREEMRKIIGR---------------YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL-LDEPTN 549 (629)
Q Consensus 490 ~~~~~~---~~~~~~~~l~~---------------~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl-LDEPT~ 549 (629)
...... ....+...+.. .-+...........+++|+++|+..+.+++..|++++ ||+|+.
T Consensus 234 ~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 234 DLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp TCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred hccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 010000 01223334430 1111112233456799999999999888899999988 999987
No 298
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.51 E-value=7.5e-10 Score=106.12 Aligned_cols=36 Identities=25% Similarity=0.152 Sum_probs=32.5
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT 277 (629)
Q Consensus 240 Rv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~ 277 (629)
.+.+|++|+.+|+++++| ||+||..++..+++.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999988754
No 299
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.50 E-value=2.6e-09 Score=105.46 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=43.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~ 148 (629)
.|+++|++..|+. +|+|.+ ++++|+|||||||||||++|+|++.|++|.|.+.+
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 4889998876642 456666 89999999999999999999999999999887653
No 300
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.48 E-value=4.8e-08 Score=94.54 Aligned_cols=126 Identities=16% Similarity=0.187 Sum_probs=77.1
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYG 508 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 508 (629)
+++|+|+|||||||+.++|+++ |...++... .... +. .+. ...+..+...+|
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~-------~~~~-----------~~--~~~---~~~~~~i~~~~g 55 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV-------VARE-----------VV--AKD---SPLLSKIVEHFG 55 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH-------HHHH-----------TT--CSS---CHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH-------HHHH-----------Hc--cCC---hHHHHHHHHHhC
Confidence 6899999999999999999983 433222100 0000 00 011 123455666777
Q ss_pred CCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-CceEEEEecCHHHH--HhhcC
Q psy10512 509 LTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF-EGGLVLVSHDFRLI--NQVAE 585 (629)
Q Consensus 509 l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~-~~~vi~vsHd~~~~--~~~~d 585 (629)
... ..|.|+.+|..++..+..+|..+.++ ++.++|.....+.+.+... +.++|+.+|.+... ...||
T Consensus 56 ~~~--------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d 125 (206)
T 1jjv_A 56 AQI--------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCD 125 (206)
T ss_dssp TTC--------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCS
T ss_pred HHH--------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCC
Confidence 531 14688999999999888887654333 3456677777777777654 34678888987665 57799
Q ss_pred EEEEEeC
Q psy10512 586 EIWICEN 592 (629)
Q Consensus 586 ~i~~l~~ 592 (629)
.+++++-
T Consensus 126 ~vi~l~~ 132 (206)
T 1jjv_A 126 RILVVDV 132 (206)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9998853
No 301
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.48 E-value=2.8e-10 Score=116.03 Aligned_cols=130 Identities=16% Similarity=0.207 Sum_probs=77.3
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------eEEe
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------RFAR 468 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~~~~ 468 (629)
.+++++.+.|.. +.++++++|.+++| ++|+||||||||||+++|++.+. .|.|.+++.. .+.+
T Consensus 50 ~~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 50 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 345666666642 34789999999999 99999999999999999999885 6777765421 1122
Q ss_pred eccchhcccCCCCCHHHHHhh--cCCCh---hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 469 YHQHLHELLDLDISPLDYMLQ--SFPEV---KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
++|.... ....+++++.+.. ..... .........+.. .+..|||||+||+.|++++..+|++
T Consensus 124 ~~~~~~~-~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~----------ll~~lsgg~~~~~~i~~a~t~~p~~-- 190 (278)
T 1iy2_A 124 LFETAKR-HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ----------LLVEMDGFEKDTAIVVMAATNRPDI-- 190 (278)
T ss_dssp HHHHHHT-SCSEEEEEETHHHHHCC--------CHHHHHHHHH----------HHHHHTTCCTTCCEEEEEEESCTTS--
T ss_pred HHHHHHh-cCCcEEehhhhHhhhcccccccCCcchHHHHHHHH----------HHHHHhCCCCCCCEEEEEecCCchh--
Confidence 2222210 0111122221100 00000 000111112211 2357999999999999999999987
Q ss_pred EeCCC
Q psy10512 544 LDEPT 548 (629)
Q Consensus 544 LDEPT 548 (629)
||++.
T Consensus 191 ld~~l 195 (278)
T 1iy2_A 191 LDPAL 195 (278)
T ss_dssp SCHHH
T ss_pred CCHhH
Confidence 67653
No 302
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.47 E-value=3.3e-08 Score=111.80 Aligned_cols=146 Identities=14% Similarity=0.135 Sum_probs=91.4
Q ss_pred eEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCc-cEEEECCc------eeEEeeccchhccc----------
Q psy10512 415 WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV-GMVRKNSH------LRFARYHQHLHELL---------- 477 (629)
Q Consensus 415 ~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~-G~i~~~~~------~~~~~~~q~~~~~~---------- 477 (629)
.+++++++.+..|+.++|+||||||||||+++|++++++.. |.+.+.+. ..+.++++.....+
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~ 127 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAKS 127 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhhcc
Confidence 47899999999999999999999999999999999999987 66655331 22344332210000
Q ss_pred ----------CCCCCHHHHHhh-cC-----CCh-hhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCC
Q psy10512 478 ----------DLDISPLDYMLQ-SF-----PEV-KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540 (629)
Q Consensus 478 ----------~~~~~~~~~~~~-~~-----~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 540 (629)
....+...++.. .. +-. ........++..+... . ...+.+|+|++|++..++....++.
T Consensus 128 ~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~---~-~~~g~~~~g~~~~i~~g~~~~a~~g 203 (604)
T 3k1j_A 128 QESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD---P-FQSGGLGTPAHERVEPGMIHRAHKG 203 (604)
T ss_dssp HTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC---C-C----CCCCGGGGEECCHHHHTTTS
T ss_pred chhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec---h-hhcCCccccccccccCceeeecCCC
Confidence 000000000000 00 000 0001122232222211 1 1225799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 541 LLLLDEPTNHLDMETIDALADAIND 565 (629)
Q Consensus 541 lLlLDEPT~~LD~~~~~~l~~~l~~ 565 (629)
+|+|||... |++.....|.+.|.+
T Consensus 204 vL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 204 VLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp EEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred EEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999988 899999999999974
No 303
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.46 E-value=9.6e-09 Score=102.95 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=35.9
Q ss_pred CeEEEEEE-EEEEcCCCCeEeeeeeEEEeC---CCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 398 PVIMVQNV-SFRYSDDGPWIYRNLEFGIDL---DTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 398 ~~l~~~~l-~~~y~~~~~~il~~vsl~i~~---Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
++|+++|+ ++.|+.+ ..+|+++||+|.+ |++++|+|++||||||+.++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~-~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEE-QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCc-chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57999999 9999323 3489999999999 99999999999999999999998653
No 304
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.46 E-value=2.1e-08 Score=113.47 Aligned_cols=178 Identities=17% Similarity=0.131 Sum_probs=94.2
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC-CceEEEeecccCCCCCcchhhhhhhchH
Q psy10512 91 ANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVP-DHIDIFHLTREMPASDKSALTCVMEVDE 169 (629)
Q Consensus 91 ~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~ 169 (629)
++++.-||...+++++++.+..|+.++|+||||+|||||+++|++...+.. +.+.+... ....... .+..+... .
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~--~~~~~~p-~i~~~p~g-~ 113 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN--PEDENMP-RIKTVPAC-Q 113 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC--TTCTTSC-EEEEEETT-H
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC--cccccCC-cEEEEecc-h
Confidence 344556788889999999999999999999999999999999999987765 33333221 1111110 00000000 0
Q ss_pred HHHHHHHHHHHHhc-cCChhHHHHH--HHHHhhhh--cc---Ch---hhHHHHHHHHHHhCCCCchhhhcccCCCChHHH
Q psy10512 170 ERVRLEKLAEQLVA-CEDDESQEQL--MDIYDRLD--DI---SA---DTAEARAANILHGLGFTKEMQQKKTKDFSGGWR 238 (629)
Q Consensus 170 ~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~l~--~~---~~---~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqr 238 (629)
....+......... .......... ..+...+. +. .. .........++..+.. .......+|+|++
T Consensus 114 ~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~----~~~~~g~~~~g~~ 189 (604)
T 3k1j_A 114 GRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRH----DPFQSGGLGTPAH 189 (604)
T ss_dssp HHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECC----CCC----CCCCGG
T ss_pred HHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEe----chhhcCCcccccc
Confidence 00000000000000 0000000000 00000000 00 00 0000011222222211 1122357999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 239 MRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT 277 (629)
Q Consensus 239 qRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~ 277 (629)
|++..++....++.+|+|||... |++.....|...|.+
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999999988 899999999998874
No 305
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.46 E-value=5.5e-08 Score=93.71 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=26.1
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 107 MLELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 107 sl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
|+++++|++++|+||||||||||+++|+|++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 6788899999999999999999999999985
No 306
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.43 E-value=6.9e-08 Score=93.41 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-CCEEEEEecCHHHH--HhhcceeEEEc
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY-KRILVIISHSQDFL--NGVCTNIIHLD 303 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~-~~tvIivsHd~~~l--~~~~d~ii~l~ 303 (629)
.|.|+.+|..+++.++.+|+.+.++ ++.++|.....+.+.+... +.++|+.+|.+... ...||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678999999999999888755443 4456777777777777654 45788888987654 56789888885
No 307
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.43 E-value=7.1e-08 Score=92.92 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=26.8
Q ss_pred eEEEeCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 421 sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
|+++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57788999999999999999999999999974
No 308
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.42 E-value=2e-07 Score=108.07 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=58.0
Q ss_pred hcccCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc--C-CEEEE-EecCHHHHHhhcceeE
Q psy10512 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTN-HLDLDACVWLEEELKTY--K-RILVI-ISHSQDFLNGVCTNII 300 (629)
Q Consensus 227 ~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~-~LD~~~~~~l~~~L~~~--~-~tvIi-vsHd~~~l~~~~d~ii 300 (629)
+..+.-+|+|+.+|..++++++.++++||+|||.. +||......++..+... + .+|++ .||+.+.+..+++...
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~ 263 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAP 263 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCC
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCC
Confidence 34567799999999999999999999999999997 99988766666555433 2 35666 4899988888877543
No 309
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.40 E-value=2.2e-07 Score=107.82 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=56.0
Q ss_pred CcCcCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc--C-ceEEE-EecCHHHHHhhcCE
Q psy10512 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN-HLDMETIDALADAINDF--E-GGLVL-VSHDFRLINQVAEE 586 (629)
Q Consensus 517 ~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~-~LD~~~~~~l~~~l~~~--~-~~vi~-vsHd~~~~~~~~d~ 586 (629)
.+..+|+|+.+|..+++.++.++++||+|||.. +||......++..+... . ..|++ .|||.+.+..+++.
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 456789999999999999999999999999996 99988776666665543 2 35666 49998888777764
No 310
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.39 E-value=1.9e-07 Score=88.36 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=33.9
Q ss_pred EeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC
Q psy10512 104 QDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD 142 (629)
Q Consensus 104 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g 142 (629)
++++|.+.+| +++|+||||||||||+++|.+++.+..+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 6889999999 9999999999999999999987766544
No 311
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.37 E-value=2.4e-07 Score=98.04 Aligned_cols=134 Identities=15% Similarity=0.157 Sum_probs=77.6
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC-----------CCccEEEECCcee-----EEeeccchhcccCCCCCHHHHHhh---
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT-----------PSVGMVRKNSHLR-----FARYHQHLHELLDLDISPLDYMLQ--- 489 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~-----------p~~G~i~~~~~~~-----~~~~~q~~~~~~~~~~~~~~~~~~--- 489 (629)
+++|+|++|||||||++.|+|... |+.|.|.+++..- .|++.+.+..........++.+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~ 260 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDA 260 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCE
Confidence 499999999999999999999876 5668888776311 122211110000000000111100
Q ss_pred -----cCCChh--h---HHHHHHHHHHcCCCCcc---cccCcCcCChhHHHHHHHH----HHH-ccCCCEEEEeCCCCCC
Q psy10512 490 -----SFPEVK--D---REEMRKIIGRYGLTGRQ---QVCPIRQLSDGQKCRVVFA----YLA-WQAPHLLLLDEPTNHL 551 (629)
Q Consensus 490 -----~~~~~~--~---~~~~~~~l~~~gl~~~~---~~~~~~~LSgGqkqrv~lA----ral-~~~p~lLlLDEPT~~L 551 (629)
...... . ...+.+++..+++.... ....+..+|+|+++++.++ +.+ ..+|++ +|||++
T Consensus 261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~ 336 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISAL 336 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTT
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECC
Confidence 001101 1 12345677887765432 1224567899988888877 555 434444 899999
Q ss_pred CHHHHHHHHHHHhhc
Q psy10512 552 DMETIDALADAINDF 566 (629)
Q Consensus 552 D~~~~~~l~~~l~~~ 566 (629)
|..+.+.|.+.|.+.
T Consensus 337 ~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 337 KRTNLELLRDKIYQL 351 (364)
T ss_dssp TTBSHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH
Confidence 999999999888653
No 312
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.35 E-value=3.3e-07 Score=100.00 Aligned_cols=111 Identities=19% Similarity=0.305 Sum_probs=70.8
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChh
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 495 (629)
.+.++++.++.| +.|+||+|+|||||+++|++.... .+.++. .. ++. ..+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~-----------~f~~is--~~----------~~~-~~~---- 89 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV-----------PFFHIS--GS----------DFV-ELF---- 89 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC-----------CEEEEE--GG----------GTT-TCC----
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC-----------CeeeCC--HH----------HHH-HHH----
Confidence 466677777777 889999999999999999985421 011110 00 000 000
Q ss_pred hHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCC----------CCCCCHHHHHHHHHHHhh
Q psy10512 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP----------TNHLDMETIDALADAIND 565 (629)
Q Consensus 496 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP----------T~~LD~~~~~~l~~~l~~ 565 (629)
++ +|+++.|..|++|....|.+|++||+ +++.|.+....+.+++..
T Consensus 90 ----------------------~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ 145 (476)
T 2ce7_A 90 ----------------------VG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE 145 (476)
T ss_dssp ----------------------TT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHH
T ss_pred ----------------------hc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHH
Confidence 00 26788899999999999999999999 446676655555555543
Q ss_pred c-------CceEEEEecCHHHH
Q psy10512 566 F-------EGGLVLVSHDFRLI 580 (629)
Q Consensus 566 ~-------~~~vi~vsHd~~~~ 580 (629)
+ +..||.+||+.+.+
T Consensus 146 ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 146 MDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHSCGGGTEEEEEEESCGGGS
T ss_pred HhccCCCCCEEEEEecCChhhh
Confidence 2 23578889988654
No 313
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.35 E-value=2.2e-07 Score=87.86 Aligned_cols=39 Identities=26% Similarity=0.257 Sum_probs=35.8
Q ss_pred eeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccE
Q psy10512 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457 (629)
Q Consensus 418 ~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~ 457 (629)
++++|.+.+| +++|+||||||||||+++|++++.+..|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 7889999998 99999999999999999999998887664
No 314
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.31 E-value=2.2e-07 Score=101.36 Aligned_cols=59 Identities=22% Similarity=0.257 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCC----------CCCCHHHHHHHHHHHhh---c----CCEEEEEecCHHHHH
Q psy10512 235 GGWRMRIALARALYVKPHLLLLDEPT----------NHLDLDACVWLEEELKT---Y----KRILVIISHSQDFLN 293 (629)
Q Consensus 235 GGqrqRv~LAraL~~~P~iLLLDEPT----------~~LD~~~~~~l~~~L~~---~----~~tvIivsHd~~~l~ 293 (629)
|++++|..+++|....|.||++||+. ++.|......+..+|.. + +..||.+||+++.+.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 67888999999999999999999994 35666555444444432 2 457888999987553
No 315
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.31 E-value=4.5e-07 Score=95.68 Aligned_cols=120 Identities=14% Similarity=0.167 Sum_probs=74.2
Q ss_pred CEEEEECCCCCchHHHHHHHHcCCCCCccEEEEC-CceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHHH
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN-SHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGR 506 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~-~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 506 (629)
-.++|+|++|+|||||++.|+|... ..|..... ....++.+.+.. . .+..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~-----~-----------------------~~~l 218 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGY-----F-----------------------RYQI 218 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETT-----E-----------------------EEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecC-----c-----------------------eEEE
Confidence 3689999999999999999998752 11111000 000111111000 0 0011
Q ss_pred cCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHhhc--CceEEEEe--cCHH
Q psy10512 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD-EPTNHLDMETIDALADAINDF--EGGLVLVS--HDFR 578 (629)
Q Consensus 507 ~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD-EPT~~LD~~~~~~l~~~l~~~--~~~vi~vs--Hd~~ 578 (629)
++..+... .++..+|+|++|++. +.+...++-++++| +|++++|......+...+... +..+|+|. ||+.
T Consensus 219 ~Dt~G~~~-~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 219 IDTPGLLD-RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp EECTTTSS-SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred EeCCCccc-cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 11122111 345689999998776 55555677789999 999999999887777776653 46788888 8874
No 316
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.28 E-value=2e-07 Score=88.81 Aligned_cols=28 Identities=36% Similarity=0.718 Sum_probs=25.7
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCCCCC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDLTPS 454 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~~p~ 454 (629)
|++++|+||||||||||+++|+|++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 5789999999999999999999999843
No 317
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.27 E-value=5.5e-08 Score=93.88 Aligned_cols=53 Identities=26% Similarity=0.211 Sum_probs=41.8
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCce
Q psy10512 91 ANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI 144 (629)
Q Consensus 91 ~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i 144 (629)
+|+++.++.....+.+++..++|++++|+||||||||||+++|++.+. .+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 477888888888889999999999999999999999999999999875 56776
No 318
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.25 E-value=2.9e-07 Score=87.74 Aligned_cols=27 Identities=37% Similarity=0.351 Sum_probs=24.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNREVP 139 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~~~p 139 (629)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999998764
No 319
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.25 E-value=1.2e-08 Score=98.13 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=30.5
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT 277 (629)
Q Consensus 241 v~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~ 277 (629)
...|++|+.+|.++++| ||+||..++..+++.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 35689999999999999 999999999988887754
No 320
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.23 E-value=5.1e-07 Score=86.94 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=30.0
Q ss_pred EEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCcc
Q psy10512 422 FGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456 (629)
Q Consensus 422 l~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G 456 (629)
++|.+|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46789999999999999999999999999977665
No 321
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.23 E-value=2.8e-07 Score=94.94 Aligned_cols=39 Identities=26% Similarity=0.276 Sum_probs=30.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEE
Q psy10512 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146 (629)
Q Consensus 108 l~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i 146 (629)
|++..|++++|+|||||||||||++|+|+..|+.|.+.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 456689999999999999999999999999999999887
No 322
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.22 E-value=2.9e-06 Score=88.49 Aligned_cols=129 Identities=14% Similarity=0.133 Sum_probs=78.7
Q ss_pred eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEeecccCCCCCcchhhhhhhchHHHHHHHHHHHH
Q psy10512 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQ 180 (629)
Q Consensus 101 ~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (629)
+-|+.+.--+.+|+.+.|.|++|+|||||+.-|+.......+.+-++ ..+++
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f--SlEms-------------------------- 85 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF--SLEMS-------------------------- 85 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE--ESSSC--------------------------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE--eCCCC--------------------------
Confidence 44666655789999999999999999999987765322211222221 11111
Q ss_pred HhccCChhHHHHHHHHHhhhhccChhhHHHHHHHHHHhCCCCchhhhcccCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q psy10512 181 LVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260 (629)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~iLLLDEPT 260 (629)
..+...++......+.+. .+.+ ..||+++.+|+..|...+.+++++|.|+|+
T Consensus 86 ------------------------~~ql~~Rlls~~~~v~~~-~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~ 137 (338)
T 4a1f_A 86 ------------------------AEQLALRALSDLTSINMH-DLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSY 137 (338)
T ss_dssp ------------------------HHHHHHHHHHHHHCCCHH-HHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTT
T ss_pred ------------------------HHHHHHHHHHHhhCCCHH-HHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCC
Confidence 000111111122222221 1221 479999999999999999999999999986
Q ss_pred CCCCHHHHHHHHHHH-hhc-CCEEEEEec
Q psy10512 261 NHLDLDACVWLEEEL-KTY-KRILVIISH 287 (629)
Q Consensus 261 ~~LD~~~~~~l~~~L-~~~-~~tvIivsH 287 (629)
. ++.........+ ++. +..+|||-|
T Consensus 138 ~--si~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 138 V--RIEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp C--CHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred C--cHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 4 455544444434 345 567887754
No 323
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.21 E-value=5.5e-06 Score=87.56 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=37.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhh------cCCEEEEEecCHHHHHhhcce
Q psy10512 249 VKPHLLLLDEPTNHLDLDACVWLEEELKT------YKRILVIISHSQDFLNGVCTN 298 (629)
Q Consensus 249 ~~P~iLLLDEPT~~LD~~~~~~l~~~L~~------~~~tvIivsHd~~~l~~~~d~ 298 (629)
.+|.||+|||+... |......|...+.+ .+.++|++||+.++...+.++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~ 178 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPS 178 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHH
Confidence 45889999999876 99888888887743 356899999998766554443
No 324
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.18 E-value=5.8e-06 Score=87.39 Aligned_cols=127 Identities=19% Similarity=0.228 Sum_probs=75.8
Q ss_pred CCC--EEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHH
Q psy10512 426 LDT--RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKI 503 (629)
Q Consensus 426 ~Ge--~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (629)
.+. .+.|.||+|+|||||++.+++.+.+..+ ..+.++... ...+. ...+..+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-------~~~~~i~~~------~~~~~-------------~~~~~~l 94 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-------ARFVYINGF------IYRNF-------------TAIIGEI 94 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-------CEEEEEETT------TCCSH-------------HHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-------eeEEEEeCc------cCCCH-------------HHHHHHH
Confidence 345 8999999999999999999998876531 111111100 01111 1223344
Q ss_pred HHHcCCCCcccccCcCcCChhHHHHHHHHHH-HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc------CceEEEEecC
Q psy10512 504 IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYL-AWQAPHLLLLDEPTNHLDMETIDALADAINDF------EGGLVLVSHD 576 (629)
Q Consensus 504 l~~~gl~~~~~~~~~~~LSgGqkqrv~lAra-l~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~------~~~vi~vsHd 576 (629)
+..++... +....+.++......... -...|.+|+|||+... |......|...+.++ +..+|++||+
T Consensus 95 ~~~l~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 95 ARSLNIPF-----PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp HHHTTCCC-----CSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred HHHhCccC-----CCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 55555421 112334443332221111 1245889999999876 998888888887543 4578899999
Q ss_pred HHHHHhhc
Q psy10512 577 FRLINQVA 584 (629)
Q Consensus 577 ~~~~~~~~ 584 (629)
.++...+.
T Consensus 169 ~~~~~~l~ 176 (389)
T 1fnn_A 169 DAVLNNLD 176 (389)
T ss_dssp THHHHTSC
T ss_pred chHHHHhC
Confidence 87665443
No 325
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.18 E-value=6.2e-07 Score=86.29 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=28.0
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q psy10512 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV 140 (629)
Q Consensus 108 l~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~ 140 (629)
++|.+|++++|+||||||||||+++|++.+.|.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 468899999999999999999999999987654
No 326
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.13 E-value=6.8e-06 Score=86.60 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=47.6
Q ss_pred cccCCCChHHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHhh-c-CCEEEEEe--cCHH
Q psy10512 228 KKTKDFSGGWRMRIALARALYVKPHLLLLD-EPTNHLDLDACVWLEEELKT-Y-KRILVIIS--HSQD 290 (629)
Q Consensus 228 ~~~~~LSGGqrqRv~LAraL~~~P~iLLLD-EPT~~LD~~~~~~l~~~L~~-~-~~tvIivs--Hd~~ 290 (629)
.++..+|+|++|++. +.+...++-|+++| +|++++|......+.+.+.. . +.++|+|. ||+.
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 456789999998876 55555677889999 99999999987666655544 3 67788888 8864
No 327
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.09 E-value=3.4e-07 Score=94.24 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=26.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEE
Q psy10512 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146 (629)
Q Consensus 108 l~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i 146 (629)
+++.+|++++|+||||+|||||+++|+|...|..|.+.+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 677899999999999999999999999999998898876
No 328
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.08 E-value=1.6e-07 Score=90.64 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=40.7
Q ss_pred EEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEE--EECC
Q psy10512 403 QNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV--RKNS 462 (629)
Q Consensus 403 ~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i--~~~~ 462 (629)
+|++..++. ..+.+..++...+|++++|+||||||||||+++|++.+. ..|.+ ++++
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 3 TNIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp -------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred CCCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 355655532 225677788889999999999999999999999999987 67876 5443
No 329
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.06 E-value=4.5e-06 Score=88.14 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCCchh---hhcccCCCChHHHHHHHHH----HHH-ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q psy10512 211 RAANILHGLGFTKEM---QQKKTKDFSGGWRMRIALA----RAL-YVKPHLLLLDEPTNHLDLDACVWLEEELKT 277 (629)
Q Consensus 211 ~~~~~L~~lgl~~~~---~~~~~~~LSGGqrqRv~LA----raL-~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~ 277 (629)
.+.++|+.+++.... ...++..+|+|+++|+.++ +++ ..+|++ +|||++|..+...|++.|.+
T Consensus 280 ~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 280 SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 345667766653211 1234667898988888877 665 444554 89999999999988887754
No 330
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.06 E-value=1.6e-06 Score=83.47 Aligned_cols=38 Identities=24% Similarity=0.182 Sum_probs=24.4
Q ss_pred eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
...++||||++.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34899999999999999999999999999999998753
No 331
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.06 E-value=6.2e-06 Score=86.98 Aligned_cols=42 Identities=31% Similarity=0.431 Sum_probs=33.1
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHc--CCCCCccEEEE
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG--DLTPSVGMVRK 460 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G--~~~p~~G~i~~ 460 (629)
+|++++++++ .|+|+|++|||||||++.|+| ++++..|.+..
T Consensus 26 ~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~ 69 (360)
T 3t34_A 26 ALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTR 69 (360)
T ss_dssp CC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCC
T ss_pred ccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccC
Confidence 6888888887 899999999999999999999 66777777653
No 332
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.06 E-value=1.2e-06 Score=83.02 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=29.2
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCC-CccEEE
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTP-SVGMVR 459 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p-~~G~i~ 459 (629)
+|++++|+||||||||||+++|++.+++ ..|.|.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 6899999999999999999999998874 445553
No 333
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.05 E-value=2.9e-06 Score=88.38 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=76.7
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChh
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 495 (629)
-|+.+.-.+.+|+.+.|.|++|+|||||+.-|+.......+. +.|+. ++++..+..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~--------Vl~fS--------lEms~~ql~-------- 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG--------VAVFS--------LEMSAEQLA-------- 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE--------EEEEE--------SSSCHHHHH--------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe--------EEEEe--------CCCCHHHHH--------
Confidence 356655578999999999999999999998887654322222 23322 223322211
Q ss_pred hHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc-CceEEEE
Q psy10512 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAI-NDF-EGGLVLV 573 (629)
Q Consensus 496 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l-~~~-~~~vi~v 573 (629)
.++.... .++...... -+.||+++.+|+..|...+.+++++|.|+|+.. +.........+ .++ +..+|+|
T Consensus 91 --~Rlls~~--~~v~~~~l~--~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 91 --LRALSDL--TSINMHDLE--SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp --HHHHHHH--HCCCHHHHH--HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEE
T ss_pred --HHHHHHh--hCCCHHHHh--cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEE
Confidence 1111122 233221111 257999999999999999999999999998654 44433333333 333 3455555
Q ss_pred e
Q psy10512 574 S 574 (629)
Q Consensus 574 s 574 (629)
-
T Consensus 163 D 163 (338)
T 4a1f_A 163 D 163 (338)
T ss_dssp E
T ss_pred e
Confidence 3
No 334
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.05 E-value=6.6e-07 Score=89.69 Aligned_cols=41 Identities=20% Similarity=0.103 Sum_probs=29.2
Q ss_pred eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHh---CCCCCCCCc
Q psy10512 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG---NREVPVPDH 143 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~---g~~~p~~g~ 143 (629)
..++.+.+ ++|++++|+||||||||||+++|+ |+..|+.|.
T Consensus 17 ~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~ 60 (252)
T 4e22_A 17 RLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGA 60 (252)
T ss_dssp ------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHH
T ss_pred hhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCc
Confidence 33444443 789999999999999999999999 876554443
No 335
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.04 E-value=1e-07 Score=98.77 Aligned_cols=129 Identities=17% Similarity=0.169 Sum_probs=68.6
Q ss_pred EeeeeeEEEeCCC------EEEEECCCCCchHHHHHHHHcCCC--CCccEEEECCceeEEeeccchhcccCCCCCHHHHH
Q psy10512 416 IYRNLEFGIDLDT------RLALVGPNGAGKSTLLNLIYGDLT--PSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYM 487 (629)
Q Consensus 416 il~~vsl~i~~Ge------~i~ivG~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 487 (629)
.+.+++..+..+. ++||+||||||||||+++|.+++. |+.|.+.+-....+ +........ ... . .
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f-~~~~~~l~~--~~~--~--~ 147 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF-LYSNAKLEK--QGL--M--K 147 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG-BCCHHHHHH--TTC--G--G
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc-ccchhhhhh--HHH--H--h
Confidence 4555555555554 899999999999999999999987 45666533211000 000000000 000 0 0
Q ss_pred hhcCCChhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q psy10512 488 LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM 553 (629)
Q Consensus 488 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~ 553 (629)
..+++...+...+.+.+..+--.......|. +|.+..+|+..+...+..|+|+|++.|..-.|.
T Consensus 148 ~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~--yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 148 RKGFPESYDMPSLLRVLNAIKSGQRNVRIPV--YSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp GTTSGGGBCHHHHHHHHHHHHTTCSSEEEEE--EETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hccCcccccHHHHHHHHHhhhccccccccch--hhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 0112322334445555554432211122333 444444444333445678999999999887765
No 336
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.03 E-value=4e-05 Score=80.42 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=32.0
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEE
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i 458 (629)
.+++|+++.|+||+|||||||+..+++...+..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 488999999999999999999999999887766655
No 337
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.02 E-value=2.5e-05 Score=81.98 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=29.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCce
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI 144 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i 144 (629)
|++|+++.|.||||||||||+..++....+..|.+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 67999999999999999999999988665544544
No 338
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.01 E-value=0.00014 Score=90.60 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=25.7
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.+++|+++.|.||.|+|||||+.-++....
T Consensus 379 Gl~~G~lilI~G~pGsGKTtLaLqia~~~a 408 (2050)
T 3cmu_A 379 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999877765443
No 339
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.01 E-value=1.8e-06 Score=83.08 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=29.9
Q ss_pred eeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC
Q psy10512 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462 (629)
Q Consensus 419 ~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 462 (629)
+..+...+|++++|+||||||||||+++|+|.+ |.+.+++
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 334566789999999999999999999999987 7777654
No 340
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=2.5e-06 Score=82.04 Aligned_cols=37 Identities=35% Similarity=0.320 Sum_probs=24.9
Q ss_pred eEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 415 WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 415 ~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.+++|+||++.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3799999999999999999999999999999999766
No 341
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.99 E-value=2.5e-06 Score=82.03 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=28.1
Q ss_pred eeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 102 ~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
++-+..++.++|++++|+||||||||||+++|++.+ |.+.+.
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~ 59 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAE 59 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEE
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEc
Confidence 333344677899999999999999999999999865 655553
No 342
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.99 E-value=2.2e-07 Score=96.35 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=44.8
Q ss_pred eEEEEeCCeeeeEeeeEEEeCCC------EEEEECCCCCcHHHHHHHHhCCCCC--CCCceEE
Q psy10512 92 NFSITFHGCELLQDTMLELNCGR------RYGLLGLNGSGKSTLLAVLGNREVP--VPDHIDI 146 (629)
Q Consensus 92 nls~~y~~~~~L~~vsl~i~~Ge------~~~liG~NGsGKSTLlk~L~g~~~p--~~g~i~i 146 (629)
.|++.|++...|.+++..+..+. ++||+||||||||||+++|.+++.+ ..|.+.+
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 45666777788888998888887 9999999999999999999998763 4455544
No 343
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.98 E-value=2.6e-06 Score=80.55 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
+|++++|+||||||||||+++|.+..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999999764
No 344
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.97 E-value=1.2e-06 Score=87.63 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=33.4
Q ss_pred eCCCEEEEECCCCCchHHHHHHHH---cCCCCCccEEE
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIY---GDLTPSVGMVR 459 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~---G~~~p~~G~i~ 459 (629)
.+|++++|+|||||||||++++|+ |+..|++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999986
No 345
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.97 E-value=2.9e-05 Score=81.35 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=25.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
-|++|+++.|.||+|||||||+..|+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988764
No 346
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.96 E-value=1.9e-05 Score=82.07 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=25.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
-+++|+++.|.||+|+|||||+..|+..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888753
No 347
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.93 E-value=2.2e-05 Score=84.39 Aligned_cols=111 Identities=10% Similarity=0.087 Sum_probs=64.3
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHH
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG 505 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 505 (629)
++.+++++|||||||||++..|++.+.+..+.|.+-.. +. . .....+....+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~--------D~-------~-----------r~~a~eqL~~~~~ 149 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA--------DV-------Y-----------RPAAYDQLLQLGN 149 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE--------CC-------S-----------CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec--------Cc-------c-----------chhHHHHHHHHHH
Confidence 46799999999999999999999999887776654210 00 0 0011122333344
Q ss_pred HcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCC-CC--CCHHHHHHHHHHHhh
Q psy10512 506 RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT-NH--LDMETIDALADAIND 565 (629)
Q Consensus 506 ~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT-~~--LD~~~~~~l~~~l~~ 565 (629)
..|++..... ...+.-.-.+-+++.+...+++++|+|+|. .+ .|.....++...+..
T Consensus 150 ~~gv~~~~~~---~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~ 209 (433)
T 3kl4_A 150 QIGVQVYGEP---NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDV 209 (433)
T ss_dssp TTTCCEECCT---TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHH
T ss_pred hcCCceeecc---ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHh
Confidence 4455321110 111111222334556656688888888887 45 677666666655443
No 348
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.91 E-value=2.2e-05 Score=81.21 Aligned_cols=53 Identities=9% Similarity=0.086 Sum_probs=39.8
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHhhcCCE--EEEEec
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE-ELKTYKRI--LVIISH 287 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~-~L~~~~~t--vIivsH 287 (629)
||+++.+|+..|...+.++++++.|+|+ +++........ +..+.+.. +|||-|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 8999999999999999999999999986 45555443333 33444666 888876
No 349
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.88 E-value=1.5e-05 Score=84.06 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=27.6
Q ss_pred eeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 100 CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 100 ~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
..+|++++++++ .++|||++|||||||++.|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 358999999998 9999999999999999999994
No 350
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.88 E-value=4e-06 Score=88.29 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=30.8
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHhh---cCCEEEEEecCHHHHHhh
Q psy10512 250 KPHLLLLDEPTNHLD---LDACVWLEEELKT---YKRILVIISHSQDFLNGV 295 (629)
Q Consensus 250 ~P~iLLLDEPT~~LD---~~~~~~l~~~L~~---~~~tvIivsHd~~~l~~~ 295 (629)
.|.||++||+....+ ......+.+.+.. .+.++|++||+.++...+
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 388999999988663 4445555555532 246899999998654433
No 351
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.87 E-value=5.4e-06 Score=87.27 Aligned_cols=129 Identities=12% Similarity=0.258 Sum_probs=68.9
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHH
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKII 504 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 504 (629)
..+..+.|.||+|+|||||++.+++.+.+..|. ...+.++.... . .+. ......++
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-----~~~~~~i~~~~---~---~~~-------------~~~~~~i~ 98 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-----KFKHVYINTRQ---I---DTP-------------YRVLADLL 98 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-----SCEEEEEEHHH---H---CSH-------------HHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-----CceEEEEECCC---C---CCH-------------HHHHHHHH
Confidence 346789999999999999999999887654321 01111221100 0 011 11122333
Q ss_pred HHcCCCCcccccCcCcCChhHHHHHHHHHHH--ccCCCEEEEeCCCCCCC---HHHHHHHHHHHhhc---CceEEEEecC
Q psy10512 505 GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA--WQAPHLLLLDEPTNHLD---METIDALADAINDF---EGGLVLVSHD 576 (629)
Q Consensus 505 ~~~gl~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlLDEPT~~LD---~~~~~~l~~~l~~~---~~~vi~vsHd 576 (629)
..++... +....+..+..... ..++ ...|.+|++||+....+ ......+.+.+..+ +..+|++||+
T Consensus 99 ~~l~~~~-----~~~~~~~~~~~~~l-~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 99 ESLDVKV-----PFTGLSIAELYRRL-VKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp TTTSCCC-----CSSSCCHHHHHHHH-HHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHhCCCC-----CCCCCCHHHHHHHH-HHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 3344321 11223444322211 1222 23388999999987663 34455555555432 4578999998
Q ss_pred HHHHHhh
Q psy10512 577 FRLINQV 583 (629)
Q Consensus 577 ~~~~~~~ 583 (629)
..+...+
T Consensus 173 ~~~~~~~ 179 (386)
T 2qby_A 173 VKFVDLL 179 (386)
T ss_dssp GGGGGGC
T ss_pred CChHhhh
Confidence 8654433
No 352
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.85 E-value=4.8e-05 Score=79.62 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=25.6
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.+++|+++.|.||+|||||||+..|+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988874
No 353
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.84 E-value=7.8e-06 Score=79.22 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=27.5
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCCCC
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDLTP 453 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p 453 (629)
++|++++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999987
No 354
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.84 E-value=7.8e-06 Score=79.20 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=26.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNREVP 139 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~~~p 139 (629)
++|++++|+||||||||||++.|++.+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998765
No 355
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.84 E-value=3.5e-06 Score=81.22 Aligned_cols=38 Identities=24% Similarity=0.092 Sum_probs=33.9
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEEC
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 461 (629)
..+|.+++|+|+||||||||+++|++.+++..|.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 46789999999999999999999999998888887653
No 356
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.83 E-value=6.5e-05 Score=80.77 Aligned_cols=35 Identities=23% Similarity=0.154 Sum_probs=29.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEE
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i 146 (629)
++.+++++|||||||||++..|++.+.+..+.+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999877665555544
No 357
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.82 E-value=6.2e-05 Score=78.11 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=25.4
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.+++|+++.|.||+|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888764
No 358
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.82 E-value=5.4e-06 Score=81.66 Aligned_cols=38 Identities=18% Similarity=0.039 Sum_probs=32.3
Q ss_pred eEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC
Q psy10512 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462 (629)
Q Consensus 421 sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 462 (629)
+...++|++++|+|+||||||||+++|+|+ .|.|.+.+
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 345578999999999999999999999998 67776654
No 359
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.82 E-value=4.4e-06 Score=82.33 Aligned_cols=39 Identities=23% Similarity=0.157 Sum_probs=32.8
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe
Q psy10512 106 TMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148 (629)
Q Consensus 106 vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~ 148 (629)
-+.+.++|++++|+|+||||||||+++|+|. .|.+.+..
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 4456679999999999999999999999996 57776653
No 360
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.82 E-value=9.6e-06 Score=88.39 Aligned_cols=57 Identities=11% Similarity=-0.100 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH
Q psy10512 236 GWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFL 292 (629)
Q Consensus 236 GqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l 292 (629)
.+.+...++...+.+++++|+......-......++.+.|++.+..+|+|.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 467777788888888998888776554334455688888888888888888776644
No 361
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.80 E-value=7e-06 Score=93.62 Aligned_cols=132 Identities=16% Similarity=0.090 Sum_probs=69.6
Q ss_pred eEEEeCCCEEEEECCCCCchHHHHHHHHcCCCC--CccEEEECCceeEEeeccchhcccCCCCCHHHHHhh-cCCChhhH
Q psy10512 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP--SVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQ-SFPEVKDR 497 (629)
Q Consensus 421 sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~ 497 (629)
|+.+.++..++|+|+||+|||||++.|++...+ ..|+| .++... .+....+.-.. .+......
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~-------------~d~~~~e~~~giti~~~~~~ 68 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTT-------------TDYTPEAKLHRTTVRTGVAP 68 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCS-------------SCCSHHHHHTTSCCSCEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccc-------------ccCCHHHHhcCCeEEecceE
Confidence 456788999999999999999999999977654 55665 222100 00011000000 00000000
Q ss_pred HHHHHHHHHcCCCCcccccCcC-cCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecC
Q psy10512 498 EEMRKIIGRYGLTGRQQVCPIR-QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHD 576 (629)
Q Consensus 498 ~~~~~~l~~~gl~~~~~~~~~~-~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd 576 (629)
+..-+..-...+.|.. .+ .......+-..++-+|++| |+.+++..+... +..+...+..+|++.|.
T Consensus 69 ------~~~~~~~~nliDTpG~~~f-----~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~-~~~~~~~~ip~ilv~NK 135 (665)
T 2dy1_A 69 ------LLFRGHRVFLLDAPGYGDF-----VGEIRGALEAADAALVAVS-AEAGVQVGTERA-WTVAERLGLPRMVVVTK 135 (665)
T ss_dssp ------EEETTEEEEEEECCCSGGG-----HHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHH-HHHHHHTTCCEEEEEEC
T ss_pred ------EeeCCEEEEEEeCCCccch-----HHHHHHHHhhcCcEEEEEc-CCcccchhHHHH-HHHHHHccCCEEEEecC
Confidence 0000000001111100 11 1122333345678899999 999999887744 44555667788889998
Q ss_pred HHH
Q psy10512 577 FRL 579 (629)
Q Consensus 577 ~~~ 579 (629)
++.
T Consensus 136 iD~ 138 (665)
T 2dy1_A 136 LDK 138 (665)
T ss_dssp GGG
T ss_pred Cch
Confidence 875
No 362
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.79 E-value=7.9e-06 Score=78.51 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=26.9
Q ss_pred eEEEeCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 421 EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 421 sl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34456899999999999999999999999876
No 363
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.79 E-value=3.3e-06 Score=89.43 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=34.3
Q ss_pred eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 101 ~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.+|+++++.+++|++++|+||||||||||+++|+|.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 588999999999999999999999999999999985
No 364
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.76 E-value=4.1e-06 Score=86.92 Aligned_cols=45 Identities=24% Similarity=0.172 Sum_probs=40.0
Q ss_pred eeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEEC
Q psy10512 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461 (629)
Q Consensus 417 l~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 461 (629)
+.+++|.+.+|++++|+|+||+||||++..|++.+.+..|+|.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 367788888999999999999999999999999999988888653
No 365
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.76 E-value=6.6e-06 Score=79.24 Aligned_cols=38 Identities=26% Similarity=0.235 Sum_probs=32.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
..+|.+++|+|+||||||||+++|++.+.+..|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 56789999999999999999999999877666776554
No 366
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.76 E-value=1.1e-05 Score=77.38 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=26.3
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 107 MLELNCGRRYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 107 sl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
|+...+|++++|+||||||||||++.|.+..+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44455899999999999999999999998753
No 367
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.75 E-value=4.2e-05 Score=82.12 Aligned_cols=54 Identities=22% Similarity=0.158 Sum_probs=44.5
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 90 i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
.+++++.|++.. ++++|+ +|++++|+|+|||||||++..|++.+.+..+.+.+.
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 456777787654 678888 899999999999999999999999988776666654
No 368
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.74 E-value=5.7e-07 Score=92.63 Aligned_cols=61 Identities=11% Similarity=0.076 Sum_probs=39.3
Q ss_pred CChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHHHHHhhc----Cc--eEEEEecCHHHHHhhcCEEE
Q psy10512 521 LSDGQKCRVVFAYLAW--QAPHLLLLDEPTNHLDMET-IDALADAINDF----EG--GLVLVSHDFRLINQVAEEIW 588 (629)
Q Consensus 521 LSgGqkqrv~lAral~--~~p~lLlLDEPT~~LD~~~-~~~l~~~l~~~----~~--~vi~vsHd~~~~~~~~d~i~ 588 (629)
+|+|++ .+++.+. ..|.+|++ |.+|... ...+.+.+.++ +. .+.+++|+-.-+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 898886 4556665 68999999 8999866 55555554433 32 34556677666666665543
No 369
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.71 E-value=1.8e-05 Score=85.74 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=31.0
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHh---hcCCEEEEEecCH
Q psy10512 249 VKPHLLLLDEPTNHLDL-DACVWLEEELK---TYKRILVIISHSQ 289 (629)
Q Consensus 249 ~~P~iLLLDEPT~~LD~-~~~~~l~~~L~---~~~~tvIivsHd~ 289 (629)
.+|+|||+||+....+. .....|+..+. +.+..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 56666666654 3467899999973
No 370
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.69 E-value=4.9e-06 Score=83.04 Aligned_cols=145 Identities=15% Similarity=0.177 Sum_probs=83.8
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCce-----------eEEe
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----------RFAR 468 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~~~~ 468 (629)
.+++++.+.|.. +.+++++++.+++| ++|+||||||||||+++|++... .|.+.+++.. .+.+
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 455666666642 23789999999999 99999999999999999999875 6777765421 1112
Q ss_pred eccchhcccCCCCCHHHHH---hhcCCC--hhhHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEE
Q psy10512 469 YHQHLHELLDLDISPLDYM---LQSFPE--VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543 (629)
Q Consensus 469 ~~q~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl 543 (629)
++|.... ....+.+++.+ ...... ........+.+. .....|||||+||+.|++++..+|++
T Consensus 100 ~~~~~~~-~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~----------~ll~~l~g~~~~~~~i~~a~t~~p~~-- 166 (254)
T 1ixz_A 100 LFETAKR-HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN----------QLLVEMDGFEKDTAIVVMAATNRPDI-- 166 (254)
T ss_dssp HHHHHTT-SSSEEEEEETHHHHHC---------CHHHHHHHH----------HHHHHHHTCCTTCCEEEEEEESCGGG--
T ss_pred HHHHHHh-cCCeEEEehhhhhhhcccCccccccchHHHHHHH----------HHHHHHhCCCCCCCEEEEEccCCchh--
Confidence 2222110 00111111111 100000 000011111111 12346899999999999999999987
Q ss_pred EeCCCCC------------CCHHHHHHHHHHH
Q psy10512 544 LDEPTNH------------LDMETIDALADAI 563 (629)
Q Consensus 544 LDEPT~~------------LD~~~~~~l~~~l 563 (629)
||++.-- .|.+.+..+++.+
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence 6776532 2455666665543
No 371
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.67 E-value=8.2e-06 Score=90.62 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=35.8
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCcc-EEE-ECC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG-MVR-KNS 462 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G-~i~-~~~ 462 (629)
.+.+|++++|+|+||||||||+++|+|.+.|+.| .+. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5779999999999999999999999999999987 674 655
No 372
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.67 E-value=1.3e-05 Score=74.99 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=28.9
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 462 (629)
.+|++++|+|+|||||||++++|++.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 368999999999999999999999875 6666654
No 373
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.67 E-value=4.9e-05 Score=78.57 Aligned_cols=130 Identities=8% Similarity=0.097 Sum_probs=74.3
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChh
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 495 (629)
-|+.+.-.+.+|+.+.|.|++|+|||||+.-++....- .| ..+.|+. .+++..+..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-------~~vl~~s--------lE~s~~~l~-------- 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-------DVVNLHS--------LEMGKKENI-------- 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-------CEEEEEE--------SSSCHHHHH--------
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------CeEEEEE--------CCCCHHHHH--------
Confidence 36666656899999999999999999998877643211 11 1222322 222222111
Q ss_pred hHHHHHHHHHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-HHHhhcCce--EEE
Q psy10512 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALA-DAINDFEGG--LVL 572 (629)
Q Consensus 496 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~-~~l~~~~~~--vi~ 572 (629)
.++.... .++........-..||+++.+|+..|...+.++++++.|+|. +++....... .+..+.+.. +|+
T Consensus 113 --~R~~~~~--~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lVV 186 (315)
T 3bh0_A 113 --KRLIVTA--GSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVM 186 (315)
T ss_dssp --HHHHHHH--TTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred --HHHHHHH--cCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEEE
Confidence 1111111 233211111110128999999999998888888999999886 4444433333 333334445 776
Q ss_pred Eec
Q psy10512 573 VSH 575 (629)
Q Consensus 573 vsH 575 (629)
|-|
T Consensus 187 ID~ 189 (315)
T 3bh0_A 187 IDY 189 (315)
T ss_dssp EEC
T ss_pred EeC
Confidence 655
No 374
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.65 E-value=6.8e-07 Score=93.72 Aligned_cols=60 Identities=23% Similarity=0.245 Sum_probs=50.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 88 i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
++.+++++.|+...+++++++.+..|.+++|+|+||+|||||++.|++.+.+..+.+.+.
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~ 90 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 90 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 556677777777788999999999999999999999999999999998876666666553
No 375
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.64 E-value=0.00018 Score=73.13 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH----------HHHHHHHHHHhhcC-------CEEEEEecCHH
Q psy10512 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDL----------DACVWLEEELKTYK-------RILVIISHSQD 290 (629)
Q Consensus 234 SGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~----------~~~~~l~~~L~~~~-------~tvIivsHd~~ 290 (629)
++++..|..++.+...+|.+|++||+.+.++. .....+...+.... ..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 35677788888888889999999999887653 22334455554431 34677888754
No 376
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.63 E-value=1.7e-05 Score=85.89 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=31.0
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHhhc---CceEEEEecC
Q psy10512 537 QAPHLLLLDEPTNHLDM-ETIDALADAINDF---EGGLVLVSHD 576 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~-~~~~~l~~~l~~~---~~~vi~vsHd 576 (629)
.+|++||+||+..-.+. .+.+.+...++.+ +..||++||+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 48999999999887764 5677777777653 4578888987
No 377
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.63 E-value=0.00018 Score=70.82 Aligned_cols=30 Identities=43% Similarity=0.538 Sum_probs=24.7
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCCCccEE
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i 458 (629)
.++|+|++|+|||||++.|+|...+.++..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~~ 60 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTA 60 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC---
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCCC
Confidence 589999999999999999999887766643
No 378
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.63 E-value=1e-05 Score=83.86 Aligned_cols=45 Identities=27% Similarity=0.245 Sum_probs=39.4
Q ss_pred eEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 103 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
+.+++|++.+|++++|+|+||+||||++..|++.+.+..+.+.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999999999999999999999888777777654
No 379
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.63 E-value=7.2e-05 Score=73.75 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=30.9
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-----CCEEEEEec
Q psy10512 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTY-----KRILVIISH 287 (629)
Q Consensus 248 ~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~-----~~tvIivsH 287 (629)
..+|+++|+..+.+.++.....++..++..+ ..++|+++|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 3478999999999999988777777665433 247888888
No 380
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.62 E-value=2e-05 Score=73.40 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=25.2
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCC
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTP 453 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p 453 (629)
.|.+++|+||||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4689999999999999999999998754
No 381
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.60 E-value=2e-05 Score=73.47 Aligned_cols=27 Identities=33% Similarity=0.287 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
.|.+++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999653
No 382
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.60 E-value=3.5e-05 Score=70.60 Aligned_cols=29 Identities=45% Similarity=0.636 Sum_probs=24.1
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q psy10512 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 105 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~ 134 (629)
+.++++.+| +.+|+|||||||||||.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 345566665 99999999999999999986
No 383
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.59 E-value=0.00018 Score=73.16 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=63.9
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHH
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG 505 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 505 (629)
++..+.|.||+|+|||||++.|++.... . +.++. .. .
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~---~--------~~~i~--------~~------------~------------ 89 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA---T--------FLNIS--------AA------------S------------ 89 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC---E--------EEEEE--------ST------------T------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC---C--------eEEee--------HH------------H------------
Confidence 4567899999999999999999985421 0 00000 00 0
Q ss_pred HcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCH----------HHHHHHHHHHhhcC-------c
Q psy10512 506 RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM----------ETIDALADAINDFE-------G 568 (629)
Q Consensus 506 ~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~----------~~~~~l~~~l~~~~-------~ 568 (629)
+. ... .-++++..+..+..+...+|.+|++||+.+-++. .....++..+.... .
T Consensus 90 ---l~----~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 90 ---LT----SKY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp ---TS----SSS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred ---Hh----hcc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 00 000 1246777888888888899999999999876653 23344555555542 2
Q ss_pred eEEEEecCHH
Q psy10512 569 GLVLVSHDFR 578 (629)
Q Consensus 569 ~vi~vsHd~~ 578 (629)
.||.+|++.+
T Consensus 161 ~vi~~tn~~~ 170 (297)
T 3b9p_A 161 VVLAATNRPQ 170 (297)
T ss_dssp EEEEEESCGG
T ss_pred EEEeecCChh
Confidence 3667788643
No 384
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.57 E-value=6.9e-06 Score=86.14 Aligned_cols=52 Identities=25% Similarity=0.282 Sum_probs=46.5
Q ss_pred eEEEEEEEEEEcCCCCeEee--------------eeeEEEeCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 399 VIMVQNVSFRYSDDGPWIYR--------------NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~--------------~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
-+.++||++.|+... .+++ |+.+.|.+|++++|+||+|+|||||++.|++.+
T Consensus 133 ri~Fe~ltp~yP~er-~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSR-LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSB-CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCc-cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 478999999997654 4788 899999999999999999999999999999865
No 385
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.55 E-value=2.9e-05 Score=72.54 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+|++++|+|+||||||||+++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999999853
No 386
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.55 E-value=9.7e-06 Score=85.02 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=45.4
Q ss_pred eEEEEeEEEEeCC-eeeeE--------------eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 87 DVKIANFSITFHG-CELLQ--------------DTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 87 ~i~i~nls~~y~~-~~~L~--------------~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+.++|+++.|+. +..|+ |+++.|.+|++++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3778899999975 56888 899999999999999999999999999998753
No 387
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.55 E-value=3.9e-05 Score=70.28 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=25.7
Q ss_pred eeeeeEEEeCCCEEEEECCCCCchHHHHHHHHc
Q psy10512 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 417 l~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G 449 (629)
+.+.++.+.+| +.+|+|||||||||++.+|.-
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 34556666654 899999999999999999873
No 388
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.54 E-value=5.9e-06 Score=94.19 Aligned_cols=45 Identities=4% Similarity=-0.094 Sum_probs=35.2
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH
Q psy10512 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFL 292 (629)
Q Consensus 246 aL~~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l 292 (629)
+-..++-+|++| |++++++.+..++. .+...+.++|++.|.++..
T Consensus 95 l~~ad~~ilVvD-~~~g~~~qt~~~~~-~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 95 LEAADAALVAVS-AEAGVQVGTERAWT-VAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHCSEEEEEEE-TTTCSCHHHHHHHH-HHHHTTCCEEEEEECGGGC
T ss_pred HhhcCcEEEEEc-CCcccchhHHHHHH-HHHHccCCEEEEecCCchh
Confidence 335688899999 99999998875544 4556788899999998753
No 389
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.51 E-value=0.0007 Score=71.04 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=23.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
+++|+++.|.|++|+|||||...++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999987764
No 390
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.49 E-value=2e-05 Score=87.47 Aligned_cols=37 Identities=30% Similarity=0.346 Sum_probs=33.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC-ceE
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD-HID 145 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g-~i~ 145 (629)
.+.+|++++|+|+||||||||+++|+|.+.|..| .+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~ 402 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVT 402 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEE
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEE
Confidence 5779999999999999999999999999888775 564
No 391
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.39 E-value=1.3e-05 Score=83.94 Aligned_cols=45 Identities=27% Similarity=0.151 Sum_probs=40.4
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 460 (629)
+++++++.+..|.+++|+|+||+|||||++.|+|.+.+..|.|.+
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 678888888999999999999999999999999999887777654
No 392
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.39 E-value=2.1e-05 Score=76.68 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=28.6
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCC---CCCccEEEE
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDL---TPSVGMVRK 460 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~---~p~~G~i~~ 460 (629)
+.+++|+||+||||||++++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999866 566776654
No 393
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.37 E-value=6.4e-05 Score=72.37 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=28.0
Q ss_pred EEEeCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 422 FGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 422 l~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
-++.+|.+++|+|++|||||||+++|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3577899999999999999999999999874
No 394
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.37 E-value=5.8e-05 Score=72.66 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=27.5
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 107 MLELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 107 sl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
-=++++|.+++|+|++|||||||+++|++.+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456789999999999999999999999975
No 395
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.35 E-value=0.0015 Score=68.53 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=25.3
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.+++|+++.|.|++|+|||||...++...
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999988777543
No 396
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.33 E-value=7.9e-05 Score=73.35 Aligned_cols=42 Identities=24% Similarity=0.379 Sum_probs=31.0
Q ss_pred eeeeeEEEe---CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEE
Q psy10512 417 YRNLEFGID---LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459 (629)
Q Consensus 417 l~~vsl~i~---~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 459 (629)
|.++||.+. .|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 666677666 8999999999999999999999999987 55553
No 397
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.31 E-value=0.0001 Score=85.90 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=28.4
Q ss_pred EEEeCCCEEEEECCCCCchHHHHHHHHcCCCC
Q psy10512 422 FGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP 453 (629)
Q Consensus 422 l~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p 453 (629)
|.+.+|+.+.|+||||||||||+++|+|.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 45778999999999999999999999998753
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.29 E-value=6.9e-05 Score=70.37 Aligned_cols=31 Identities=29% Similarity=0.246 Sum_probs=27.1
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCCCCCcc
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G 456 (629)
.+|.+++|+|++||||||++++|++.+.| .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 36899999999999999999999998765 45
No 399
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.26 E-value=0.00015 Score=69.86 Aligned_cols=29 Identities=45% Similarity=0.636 Sum_probs=24.2
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q psy10512 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 105 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~ 134 (629)
+.++.+.+| +.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 455666665 99999999999999999885
No 400
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.26 E-value=3.6e-05 Score=75.05 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+.+++|+||+||||||++++|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998753
No 401
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.25 E-value=7.5e-05 Score=78.35 Aligned_cols=35 Identities=37% Similarity=0.444 Sum_probs=30.4
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 460 (629)
.+.+++|+|++|||||||++.|+|.+.|..|.|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 45689999999999999999999988887777654
No 402
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.23 E-value=9.6e-05 Score=72.73 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=27.4
Q ss_pred eEeeeEEEe---CCCEEEEECCCCCcHHHHHHHHhCCCCC
Q psy10512 103 LQDTMLELN---CGRRYGLLGLNGSGKSTLLAVLGNREVP 139 (629)
Q Consensus 103 L~~vsl~i~---~Ge~~~liG~NGsGKSTLlk~L~g~~~p 139 (629)
|.++||.+. .|.+++|.|++||||||+++.|+..+.+
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 566666665 8999999999999999999999987765
No 403
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.22 E-value=2.3e-05 Score=82.61 Aligned_cols=47 Identities=28% Similarity=0.272 Sum_probs=38.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q psy10512 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP 139 (629)
Q Consensus 87 ~i~i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p 139 (629)
.+.+.|++..|+.+.++++++|.| +|||+||+|||||++.|.|...+
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC
Confidence 588899999998888999999987 99999999999999999886544
No 404
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.21 E-value=0.0023 Score=65.98 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=24.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
-+++|+++.|.||+|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987764
No 405
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.16 E-value=0.00042 Score=70.93 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=25.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45678889999999999999999999854
No 406
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.16 E-value=0.00019 Score=69.13 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=25.0
Q ss_pred eeeeeEEEeCCCEEEEECCCCCchHHHHHHHH
Q psy10512 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY 448 (629)
Q Consensus 417 l~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~ 448 (629)
+.+.++.+.+ .+.+|+|||||||||++.+|.
T Consensus 14 ~~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 14 HSDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp BSSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 4455666655 499999999999999999885
No 407
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.13 E-value=5.3e-05 Score=84.32 Aligned_cols=57 Identities=23% Similarity=0.277 Sum_probs=44.0
Q ss_pred EEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEEC
Q psy10512 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461 (629)
Q Consensus 402 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 461 (629)
++++...|.. ..++.++++++ +|++++|+||||+|||||+++|++.+.+..|.|...
T Consensus 86 ~~~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 86 LEKVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp CHHHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 4455555531 23577788877 799999999999999999999999998877776543
No 408
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.13 E-value=0.00014 Score=76.28 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=31.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEEe
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~~ 148 (629)
.+.+++|+|++|||||||++.|+|...+..+.+.+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 5678999999999999999999998777767766543
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.07 E-value=0.00011 Score=71.09 Aligned_cols=40 Identities=23% Similarity=0.177 Sum_probs=33.9
Q ss_pred EEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCcc--EEEEC
Q psy10512 422 FGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG--MVRKN 461 (629)
Q Consensus 422 l~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G--~i~~~ 461 (629)
+.+.+|.+++|+|++||||||+.+.|++.+.|..| .+.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 34678999999999999999999999999887777 55544
No 410
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.07 E-value=0.00036 Score=71.43 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=25.9
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45678889999999999999999999875
No 411
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.06 E-value=0.00025 Score=67.02 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=26.4
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 105 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
++|++...|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999864
No 412
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.04 E-value=0.00024 Score=66.60 Aligned_cols=29 Identities=34% Similarity=0.338 Sum_probs=25.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNREVP 139 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~~~p 139 (629)
.+|++++|+|++||||||++++|++.+.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 36899999999999999999999986544
No 413
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.04 E-value=1.2e-05 Score=89.67 Aligned_cols=49 Identities=18% Similarity=0.147 Sum_probs=40.4
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q psy10512 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP 139 (629)
Q Consensus 90 i~nls~~y~~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p 139 (629)
++++.+.|+...++.++++++ +|+.++|+||||+|||||+++|++...+
T Consensus 86 ~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 86 LEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 345555665556788888888 8999999999999999999999998654
No 414
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.01 E-value=0.00058 Score=69.70 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=24.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNREVPVPD 142 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~~~p~~g 142 (629)
..+.|+||+|+|||||+++|++...+..+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~ 76 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEE 76 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence 47899999999999999999987644333
No 415
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.99 E-value=0.0014 Score=67.55 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+..+.|.||+|+|||||++.|++..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3568899999999999999998754
No 416
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.99 E-value=0.00026 Score=67.71 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g 135 (629)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 417
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.97 E-value=0.0002 Score=76.87 Aligned_cols=42 Identities=19% Similarity=-0.028 Sum_probs=37.3
Q ss_pred eeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEEC
Q psy10512 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461 (629)
Q Consensus 418 ~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 461 (629)
++++|+ ++++++|+|+|||||||++..|++.+.+..|.|.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 566776 889999999999999999999999999988888653
No 418
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.96 E-value=0.00088 Score=68.31 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=26.7
Q ss_pred CEEEEECCCCCchHHHHHHHHcCCCCCccEE
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i 458 (629)
..+.|+||+|+|||||+++|++.+.+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 4689999999999999999999887766544
No 419
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.96 E-value=0.0003 Score=67.32 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=20.4
Q ss_pred EEEEECCCCCchHHHHHHHHc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G 449 (629)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 420
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.92 E-value=0.00035 Score=67.03 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=25.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
...+|.+++|+||+|||||||.+.|...+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999999998765
No 421
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.92 E-value=0.0028 Score=65.35 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=24.6
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHc
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G 449 (629)
.+++|+++.|.|++|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999988774
No 422
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.92 E-value=0.00038 Score=65.73 Aligned_cols=32 Identities=16% Similarity=0.328 Sum_probs=26.4
Q ss_pred eeeEEEeCCCEEEEECCCCCchHHHHHHHHcC
Q psy10512 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 419 ~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
++|+....|.+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46888889999999999999999999999875
No 423
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.91 E-value=0.00026 Score=66.82 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=30.9
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEE
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i 458 (629)
...+|.+++|+|++||||||+.+.|++.+.+..|.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345789999999999999999999999887766655
No 424
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.91 E-value=0.00014 Score=69.41 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=30.2
Q ss_pred EEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHc
Q psy10512 406 SFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 406 ~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G 449 (629)
++.|++-. .+++++||..+.. .++|+|++|+|||||++.+++
T Consensus 6 ~~~~~~~~-~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGFS-SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------C-HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHH-HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 34554433 3788888887776 589999999999999999987
No 425
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.90 E-value=0.00076 Score=65.19 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=31.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--ceEEEEecCHH
Q psy10512 537 QAPHLLLLDEPTNHLDMETIDALADAINDFE--GGLVLVSHDFR 578 (629)
Q Consensus 537 ~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~--~~vi~vsHd~~ 578 (629)
..|.+|++||.-. ||......|...+.+.. ..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 4578999999755 88898999998887653 35788887754
No 426
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.89 E-value=0.00054 Score=63.68 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.+|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999999999864
No 427
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.88 E-value=0.0006 Score=64.42 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=20.8
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHc
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G 449 (629)
+++++++..+.. .++|+|++|+|||||++.+++
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 678899988776 789999999999999999997
No 428
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.86 E-value=6.1e-05 Score=77.16 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=42.9
Q ss_pred EEeEEEEeCCeeeeEe-eeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 90 IANFSITFHGCELLQD-TMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 90 i~nls~~y~~~~~L~~-vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
.++++..|++.. .+ ++|+.+ |.+++++|+||+||||++..|++.+.+..+.+.+.
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 456666676543 56 888876 99999999999999999999999877665666543
No 429
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.86 E-value=0.00015 Score=74.31 Aligned_cols=42 Identities=19% Similarity=-0.011 Sum_probs=36.4
Q ss_pred ee-eeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE
Q psy10512 418 RN-LEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460 (629)
Q Consensus 418 ~~-vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 460 (629)
.+ ++|+++ |.+++++|+||+||||++..|++.+.+..|.|.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45 677766 8999999999999999999999999888777765
No 430
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.86 E-value=0.00056 Score=72.53 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=32.5
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcC-----------CCCCccEEEECC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGD-----------LTPSVGMVRKNS 462 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~-----------~~p~~G~i~~~~ 462 (629)
.+..|..++|+|+||+|||||++.|+|. +.|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3467889999999999999999999998 677788877654
No 431
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.84 E-value=5.7e-05 Score=78.73 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=40.6
Q ss_pred eEEEEeCCeeeeEeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhCCCCC
Q psy10512 92 NFSITFHGCELLQDTMLELNCGRR--YGLLGLNGSGKSTLLAVLGNREVP 139 (629)
Q Consensus 92 nls~~y~~~~~L~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~L~g~~~p 139 (629)
+++..||...+++.++..+..|++ +.|.||+|+|||||++++++.+.+
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 344456777789999999999998 999999999999999999986543
No 432
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.83 E-value=0.00056 Score=63.55 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
+|..++|+|++|+|||||++.|+|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 578899999999999999999998653
No 433
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.83 E-value=0.0042 Score=67.12 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=38.6
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH-HHHHHhhcCCEEEEEec
Q psy10512 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVW-LEEELKTYKRILVIISH 287 (629)
Q Consensus 231 ~~LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~-l~~~L~~~~~tvIivsH 287 (629)
..||..+.+|+.-|...+.+.++.+.|+|. +++..... +..+.++.+..+|||-+
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 469999999999888778888899998764 44544443 33344455667777754
No 434
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.81 E-value=0.00013 Score=69.65 Aligned_cols=42 Identities=33% Similarity=0.488 Sum_probs=31.3
Q ss_pred EEEeCCe-eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 94 SITFHGC-ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 94 s~~y~~~-~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
++.|++. .+++++||..+.+ .++|+|++|+|||||++.+.+.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4456553 5889999998888 5889999999999999999874
No 435
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.79 E-value=0.01 Score=62.35 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
-+++|+++.|.||.|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 368999999999999999999976653
No 436
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.77 E-value=0.00025 Score=77.80 Aligned_cols=57 Identities=21% Similarity=0.365 Sum_probs=44.1
Q ss_pred EEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC
Q psy10512 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462 (629)
Q Consensus 400 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 462 (629)
.+++++...|.. +.+|+++++.+++| +.|+||||+|||||+++|++... .+.+.+++
T Consensus 41 ~~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g 97 (499)
T 2dhr_A 41 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 97 (499)
T ss_dssp HHHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred HHHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEeh
Confidence 445555555532 23688999999998 99999999999999999999875 56676654
No 437
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.76 E-value=0.00063 Score=65.24 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=26.1
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
...+|.+++|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356789999999999999999999998764
No 438
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.76 E-value=0.001 Score=68.57 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=23.9
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCCCCC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDLTPS 454 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~~p~ 454 (629)
+..+.|.||+|+|||||++.|++.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4578999999999999999999876543
No 439
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.75 E-value=0.0022 Score=62.93 Aligned_cols=62 Identities=10% Similarity=0.141 Sum_probs=37.6
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHH-HHHHhhcC-c-eEEE-EecCHHHHHhhc
Q psy10512 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTN-HLDMETIDAL-ADAINDFE-G-GLVL-VSHDFRLINQVA 584 (629)
Q Consensus 521 LSgGqkqrv~lAral~~~p~lLlLDEPT~-~LD~~~~~~l-~~~l~~~~-~-~vi~-vsHd~~~~~~~~ 584 (629)
.+.|...+... ..+.+.++||+||.-. ++|......+ ...+.... . .+++ .|.+.+.+.++.
T Consensus 161 ~Tpg~l~~~l~--~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~ 227 (235)
T 3llm_A 161 CTVGVLLRKLE--AGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYF 227 (235)
T ss_dssp EEHHHHHHHHH--HCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHT
T ss_pred ECHHHHHHHHH--hhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHc
Confidence 35566666543 3588999999999966 6888776433 44444433 2 3433 356655555544
No 440
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.74 E-value=0.0002 Score=78.48 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=36.5
Q ss_pred CeeeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 99 ~~~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
+..+++++++.+++| +.|+||||+|||||+++|++... .+.+.+.
T Consensus 52 ~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~ 96 (499)
T 2dhr_A 52 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 96 (499)
T ss_dssp CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEe
Confidence 345688899999999 99999999999999999999753 3444443
No 441
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.74 E-value=0.001 Score=71.94 Aligned_cols=35 Identities=34% Similarity=0.444 Sum_probs=29.3
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC------------CCccEEEECCc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT------------PSVGMVRKNSH 463 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~------------p~~G~i~~~~~ 463 (629)
.++|+|+||+|||||++.|+|... |..|.+.+++.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 699999999999999999999864 56677777764
No 442
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.73 E-value=0.00098 Score=61.24 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.++|+|++|+|||||++.|.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 443
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.73 E-value=0.0052 Score=66.40 Aligned_cols=128 Identities=14% Similarity=0.175 Sum_probs=76.5
Q ss_pred EeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChh
Q psy10512 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495 (629)
Q Consensus 416 il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 495 (629)
-|+.+.-.+.+|+++.|.|++|+|||||+.-|+.......| ..+.|+. ..++..+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-------~~vl~~s--------lE~~~~~---------- 243 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-------VGVGIYS--------LEMPAAQ---------- 243 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------CCEEEEE--------SSSCHHH----------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-------CeEEEEE--------CCCCHHH----------
Confidence 36666656899999999999999999998888765432222 1122221 1222211
Q ss_pred hHHHHHHHH-HHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH-HHHHHhhcCceEEEE
Q psy10512 496 DREEMRKII-GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA-LADAINDFEGGLVLV 573 (629)
Q Consensus 496 ~~~~~~~~l-~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~-l~~~l~~~~~~vi~v 573 (629)
-...++ ...++...... -+.||..+.+|+.-|...+...++.+.|+|. +++..... +..+..+.+..+|+|
T Consensus 244 ---l~~R~~~~~~~i~~~~l~--~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 244 ---LTLRMMCSEARIDMNRVR--LGQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGLIII 316 (444)
T ss_dssp ---HHHHHHHHHTTCCTTTCC--GGGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCEEEE
T ss_pred ---HHHHHHHHHcCCCHHHHh--CCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCEEEE
Confidence 111222 23455432221 2579999999998888777788888888764 44444333 333344455566666
Q ss_pred ec
Q psy10512 574 SH 575 (629)
Q Consensus 574 sH 575 (629)
-+
T Consensus 317 D~ 318 (444)
T 2q6t_A 317 DY 318 (444)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 444
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.00044 Score=65.17 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=28.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCCce
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI 144 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i 144 (629)
...+|.+++|+|++||||||+.+.|+..+.+..+.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345789999999999999999999988765443444
No 445
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.72 E-value=0.00085 Score=65.23 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHHHH
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG 505 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 505 (629)
.+..+.|.||+|+|||||++.++.........+.+-....+........
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 99 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALL------------------------------- 99 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGG-------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH-------------------------------
Q ss_pred HcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH--HHHHHHHHhhc---Cce-EEEEecC
Q psy10512 506 RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET--IDALADAINDF---EGG-LVLVSHD 576 (629)
Q Consensus 506 ~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~--~~~l~~~l~~~---~~~-vi~vsHd 576 (629)
..+.+|.+|++|| ...++... ...+...+... +.. +|++|+.
T Consensus 100 ----------------------------~~~~~~~vliiDe-~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 100 ----------------------------EGLEQFDLICIDD-VDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp ----------------------------TTGGGSSEEEEET-GGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred ----------------------------HhccCCCEEEEec-cccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
No 446
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.71 E-value=0.001 Score=64.22 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=32.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHH
Q psy10512 249 VKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQD 290 (629)
Q Consensus 249 ~~P~iLLLDEPT~~LD~~~~~~l~~~L~~~--~~tvIivsHd~~ 290 (629)
.+|.+|++||.-. ||......|...+.+. +..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 4678999999766 7888888888888764 356888888765
No 447
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.68 E-value=0.0002 Score=74.68 Aligned_cols=36 Identities=33% Similarity=0.241 Sum_probs=32.2
Q ss_pred eeEeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhCCC
Q psy10512 102 LLQDTMLELNCGRR--YGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 102 ~L~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 67778888899998 9999999999999999998753
No 448
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.68 E-value=0.00067 Score=64.09 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=21.1
Q ss_pred eeeEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 101 ~~L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.+++++++..+.. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999998887 7899999999999999999874
No 449
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.67 E-value=0.0011 Score=60.98 Aligned_cols=24 Identities=38% Similarity=0.654 Sum_probs=21.9
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999754
No 450
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.66 E-value=0.00093 Score=62.60 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 451
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.65 E-value=0.00027 Score=68.24 Aligned_cols=34 Identities=35% Similarity=0.289 Sum_probs=28.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD 142 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g 142 (629)
.+.+|.+++|+|++||||||+.+.|++.+.|..|
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 3457889999999999999999999987654444
No 452
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.64 E-value=0.00089 Score=62.74 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=20.9
Q ss_pred EEEEECCCCCchHHHHHHHHcCCCCCc
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLTPSV 455 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~p~~ 455 (629)
.++|+|++|+|||||++.++|...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~ 30 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDL 30 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccC
Confidence 589999999999999999999754433
No 453
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.63 E-value=0.00055 Score=70.13 Aligned_cols=61 Identities=15% Similarity=0.092 Sum_probs=40.8
Q ss_pred CChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHHHHHhh----cCC--EEEEEecCHHHHHhhcceeE
Q psy10512 233 FSGGWRMRIALARALY--VKPHLLLLDEPTNHLDLDA-CVWLEEELKT----YKR--ILVIISHSQDFLNGVCTNII 300 (629)
Q Consensus 233 LSGGqrqRv~LAraL~--~~P~iLLLDEPT~~LD~~~-~~~l~~~L~~----~~~--tvIivsHd~~~l~~~~d~ii 300 (629)
+|+|++ .+++.+. ..|.+|++ |.+|... ...+.+.+.+ ++. .+.+++|+-+-+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 888886 5566666 78999999 8999765 4444444432 343 45556687777777777665
No 454
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.58 E-value=0.0056 Score=59.72 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=39.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecC----------HHHHHhhcceeEEEc
Q psy10512 250 KPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHS----------QDFLNGVCTNIIHLD 303 (629)
Q Consensus 250 ~P~iLLLDEPT~~LD~~~~~~l~~~L~~~~~tvIivsHd----------~~~l~~~~d~ii~l~ 303 (629)
+|+++++||--. |+.+....+ ..|.+.+.+||++-|+ ...+..+||.|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 877654444 4555668999999994 344667999998875
No 455
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.57 E-value=0.0015 Score=68.41 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
..+..+.|.||.|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999997643
No 456
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.57 E-value=0.002 Score=67.43 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
..+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999997664
No 457
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.56 E-value=0.0035 Score=63.00 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.4
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
..+.-+.|.||.|+|||||++.|+..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 455669999999999999999998865
No 458
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.55 E-value=0.00087 Score=64.00 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998753
No 459
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.55 E-value=0.00097 Score=62.52 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
..|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999974
No 460
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.54 E-value=0.0012 Score=61.56 Aligned_cols=22 Identities=41% Similarity=0.759 Sum_probs=20.7
Q ss_pred EEEEECCCCCchHHHHHHHHcC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 461
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.54 E-value=0.0011 Score=65.13 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=23.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 110 LNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 110 i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
-.+|.+++|+|++||||||+.++|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999873
No 462
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.54 E-value=0.00027 Score=73.58 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=32.8
Q ss_pred EeeeeeEEEeCCCE--EEEECCCCCchHHHHHHHHcCCC
Q psy10512 416 IYRNLEFGIDLDTR--LALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 416 il~~vsl~i~~Ge~--i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
+++.+++.+.+|++ ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56778888899998 99999999999999999998653
No 463
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.52 E-value=0.00016 Score=76.16 Aligned_cols=51 Identities=24% Similarity=0.327 Sum_probs=35.3
Q ss_pred eEEEEEEEEEEcCCCCeEeeeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCCCCccE
Q psy10512 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457 (629)
Q Consensus 399 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~ 457 (629)
.+.+.+++..|+. ..++++++|.| +|+|++|+|||||++.|.|...+..|.
T Consensus 17 ~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 17 YVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp ----CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred eEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 5778888888753 23688888876 999999999999999999876655444
No 464
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.50 E-value=0.00099 Score=63.62 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 465
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.49 E-value=0.022 Score=59.73 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=23.9
Q ss_pred EEeCCCEEEEECCCCCchHHHHHHHHc
Q psy10512 423 GIDLDTRLALVGPNGAGKSTLLNLIYG 449 (629)
Q Consensus 423 ~i~~Ge~i~ivG~NGsGKSTLlk~l~G 449 (629)
.+++|+++.|.|+.|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999877654
No 466
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.45 E-value=0.0012 Score=61.87 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=22.5
Q ss_pred eCCCEEEEECCCCCchHHHHHHHHcC
Q psy10512 425 DLDTRLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 425 ~~Ge~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
..|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999853
No 467
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.44 E-value=0.0015 Score=61.04 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 468
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.43 E-value=0.0059 Score=61.32 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 111 NCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 111 ~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
..+..+.|.||.|+|||||++.|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345568999999999999999998753
No 469
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.42 E-value=0.0014 Score=64.27 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.8
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcC
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGD 450 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~ 450 (629)
-.+|.+++|+|++||||||+.++|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999974
No 470
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.42 E-value=0.0011 Score=70.41 Aligned_cols=28 Identities=36% Similarity=0.606 Sum_probs=24.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 109 ~i~~Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.+..|..++|||+||+|||||++.|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3457788999999999999999999997
No 471
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.39 E-value=0.0015 Score=69.34 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=30.2
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEE
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 460 (629)
.+..++|+|++|||||||++.|++...+..+.|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 56789999999999999999999888777777754
No 472
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.37 E-value=0.017 Score=59.07 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHH--c--cCCCEEEEeCCCCCCC-H--H-----------HH-H-------HHHHHHhhcCCEEEEEecC
Q psy10512 235 GGWRMRIALARAL--Y--VKPHLLLLDEPTNHLD-L--D-----------AC-V-------WLEEELKTYKRILVIISHS 288 (629)
Q Consensus 235 GGqrqRv~LAraL--~--~~P~iLLLDEPT~~LD-~--~-----------~~-~-------~l~~~L~~~~~tvIivsHd 288 (629)
-++++.+.++.+| + .+|+++++|=-++..- . + .+ + .|..++++.+.++|+|-|-
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3566656677666 3 3699999998777641 0 0 11 1 1223456678999999997
Q ss_pred HH
Q psy10512 289 QD 290 (629)
Q Consensus 289 ~~ 290 (629)
..
T Consensus 172 ~k 173 (333)
T 3io5_A 172 YE 173 (333)
T ss_dssp --
T ss_pred ee
Confidence 65
No 473
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.34 E-value=0.00096 Score=62.62 Aligned_cols=27 Identities=33% Similarity=0.424 Sum_probs=23.9
Q ss_pred CEEEEECCCCCchHHHHHHHHcCCCCC
Q psy10512 428 TRLALVGPNGAGKSTLLNLIYGDLTPS 454 (629)
Q Consensus 428 e~i~ivG~NGsGKSTLlk~l~G~~~p~ 454 (629)
.+++|+|++|||||||++.|.+.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 579999999999999999999886543
No 474
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.32 E-value=0.0012 Score=65.68 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=23.5
Q ss_pred eEeeeEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 103 L~~vsl~i~~Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+.++++.++.| +.|+||+|+|||||+++|++..
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 34444555555 8899999999999999999854
No 475
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.32 E-value=0.00027 Score=73.58 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=36.7
Q ss_pred eEeeeeeEEEeCCCE--EEEECCCCCchHHHHHHHHcCCCCCcc
Q psy10512 415 WIYRNLEFGIDLDTR--LALVGPNGAGKSTLLNLIYGDLTPSVG 456 (629)
Q Consensus 415 ~il~~vsl~i~~Ge~--i~ivG~NGsGKSTLlk~l~G~~~p~~G 456 (629)
.+++.++..|..|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 367888888999988 999999999999999999998766544
No 476
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.27 E-value=0.0024 Score=68.95 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
.++|||+||+|||||++.|+|...
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcc
Confidence 799999999999999999999753
No 477
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.27 E-value=0.0022 Score=59.07 Aligned_cols=22 Identities=32% Similarity=0.123 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~ 136 (629)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 478
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.25 E-value=0.0017 Score=67.32 Aligned_cols=106 Identities=12% Similarity=0.238 Sum_probs=0.0
Q ss_pred EEEECCCCCchHHHHHHHHcC------CCCCccEEEECCceeEEeeccchhcccCCCCCHHHHHhhcCCChhhHHHHHHH
Q psy10512 430 LALVGPNGAGKSTLLNLIYGD------LTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKI 503 (629)
Q Consensus 430 i~ivG~NGsGKSTLlk~l~G~------~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (629)
+.|.||+|+|||||++.|++. ....--.+.......+..+.+........................
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 132 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCP-------- 132 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCC--------
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCC--------
Q ss_pred HHHcCCCCcccccCcCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCHH
Q psy10512 504 IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFR 578 (629)
Q Consensus 504 l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~--~~~vi~vsHd~~ 578 (629)
++.+|++|| ...|+......|.+.+.+. ...+|++|++..
T Consensus 133 ----------------------------------~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 ----------------------------------PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp ----------------------------------SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ----------------------------------CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
No 479
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.25 E-value=0.0021 Score=60.32 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 114 RRYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 114 e~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
.+++|+|++|||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999988654
No 480
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.24 E-value=0.029 Score=60.21 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCchHHHHHHHHcCCCCC
Q psy10512 426 LDTRLALVGPNGAGKSTLLNLIYGDLTPS 454 (629)
Q Consensus 426 ~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~ 454 (629)
++.+++++|++|+||||++..|+..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 35689999999999999999999776643
No 481
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.21 E-value=0.01 Score=58.63 Aligned_cols=24 Identities=54% Similarity=0.670 Sum_probs=21.8
Q ss_pred EEEEECCCCCchHHHHHHHHcCCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.|+|+|+.|+|||||++.|+|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 589999999999999999998654
No 482
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.18 E-value=0.011 Score=63.70 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HhhcCCE--EEEEec
Q psy10512 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEE-LKTYKRI--LVIISH 287 (629)
Q Consensus 233 LSGGqrqRv~LAraL~~~P~iLLLDEPT~~LD~~~~~~l~~~-L~~~~~t--vIivsH 287 (629)
|+..+.+|+.-|...+.+.+++|.|+|. +++......... .++.+.. +|||-+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7888888888888777788899999874 677665544433 3445666 887765
No 483
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.18 E-value=0.0015 Score=64.85 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=23.4
Q ss_pred eeeeEEEeCCCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 418 ~~vsl~i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
.++++.++.| +.|+||+|+|||||+++|++...
T Consensus 38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp -----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 3334444444 88999999999999999998764
No 484
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.17 E-value=0.0028 Score=58.87 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
|.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998754
No 485
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.16 E-value=0.0024 Score=58.69 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.9
Q ss_pred EEEEECCCCCchHHHHHHHHcCC
Q psy10512 429 RLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 486
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.11 E-value=0.0017 Score=63.91 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
.-+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998543
No 487
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.04 E-value=0.0035 Score=58.71 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
|.+++|.|++||||||+.+.|+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999975
No 488
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.03 E-value=0.0032 Score=57.75 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q psy10512 115 RYGLLGLNGSGKSTLLAVL 133 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L 133 (629)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 489
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.02 E-value=0.0036 Score=58.08 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCCC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDLT 452 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~~ 452 (629)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999997654
No 490
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.00 E-value=0.0027 Score=67.40 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=34.0
Q ss_pred CeeeeEeeeEEEe---CCCEEEEECCCCCcHHHHHHHHhCCCCCCCCceEEE
Q psy10512 99 GCELLQDTMLELN---CGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147 (629)
Q Consensus 99 ~~~~L~~vsl~i~---~Ge~~~liG~NGsGKSTLlk~L~g~~~p~~g~i~i~ 147 (629)
+.+++-|. +... .+..++|+||+|||||||++.|.+...+..+.+.+.
T Consensus 19 g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 19 GGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp SCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 44555555 3222 567899999999999999999987665555555443
No 491
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.98 E-value=0.05 Score=58.33 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q psy10512 112 CGRRYGLLGLNGSGKSTLLAVLGNREV 138 (629)
Q Consensus 112 ~Ge~~~liG~NGsGKSTLlk~L~g~~~ 138 (629)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999998886544
No 492
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.97 E-value=0.0023 Score=63.59 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=28.5
Q ss_pred EeCCCEEEEECCCCCchHHHHHHHHcCCCCCccEEEECC
Q psy10512 424 IDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462 (629)
Q Consensus 424 i~~Ge~i~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 462 (629)
...+.++.|+|++||||||+.+.|+..+. .|.+.+++
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 34567899999999999999999998764 23455444
No 493
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.96 E-value=0.0035 Score=61.58 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGNR 136 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g~ 136 (629)
.-+++|+||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999853
No 494
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.94 E-value=0.0031 Score=58.55 Aligned_cols=20 Identities=45% Similarity=0.627 Sum_probs=0.0
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q psy10512 115 RYGLLGLNGSGKSTLLAVLG 134 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~ 134 (629)
+++|+|++||||||+.+.|+
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
No 495
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.92 E-value=0.011 Score=64.12 Aligned_cols=57 Identities=9% Similarity=-0.046 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCHHHH
Q psy10512 524 GQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLI 580 (629)
Q Consensus 524 Gqkqrv~lAral~~~p~lLlLDEPT~~LD~~~~~~l~~~l~~~~~~vi~vsHd~~~~ 580 (629)
.+.+....+...+.+++++|+......-......++.+.+++.+..+|+|-+-.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 477777788888888997777666544333445678888888777888877765544
No 496
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.90 E-value=0.004 Score=58.98 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q psy10512 115 RYGLLGLNGSGKSTLLAVLGNRE 137 (629)
Q Consensus 115 ~~~liG~NGsGKSTLlk~L~g~~ 137 (629)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998743
No 497
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.89 E-value=0.0043 Score=58.08 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCchHHHHHHHHcCC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYGDL 451 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G~~ 451 (629)
|-++.|.|+.||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998643
No 498
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.89 E-value=0.0038 Score=57.22 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=18.3
Q ss_pred EEEEECCCCCchHHHHHHH
Q psy10512 429 RLALVGPNGAGKSTLLNLI 447 (629)
Q Consensus 429 ~i~ivG~NGsGKSTLlk~l 447 (629)
+++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 499
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.87 E-value=0.0061 Score=63.87 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=29.6
Q ss_pred CCEEEEECCCCCchHHHHHHHHc-----------CCCCCccEEEECC
Q psy10512 427 DTRLALVGPNGAGKSTLLNLIYG-----------DLTPSVGMVRKNS 462 (629)
Q Consensus 427 Ge~i~ivG~NGsGKSTLlk~l~G-----------~~~p~~G~i~~~~ 462 (629)
|-.++|||.+|+|||||++.|+| -+.|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45799999999999999999998 3457778776644
No 500
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.87 E-value=0.0039 Score=60.17 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q psy10512 113 GRRYGLLGLNGSGKSTLLAVLGN 135 (629)
Q Consensus 113 Ge~~~liG~NGsGKSTLlk~L~g 135 (629)
+-+++|+|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
Done!