RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10512
(629 letters)
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 512 bits (1321), Expect = e-177
Identities = 211/532 (39%), Positives = 312/532 (58%), Gaps = 16/532 (3%)
Query: 85 SRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI 144
+ + N S+ + LL++ L LN G R GL+G NG+GKSTLL +L P +
Sbjct: 1 MSMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 145 D------IFHLTREMPA-SDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIY 197
+ +L++E P +K+ L V+E E L E+ A D E L ++
Sbjct: 61 TRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 198 DRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
L+++ T EARA L GLGF E + SGGWR R+ALARAL +P LLLLD
Sbjct: 121 ALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSGGWRRRVALARALLEEPDLLLLD 178
Query: 258 EPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
EPTNHLDL++ WLE+ LK Y ++++SH + FL+ V T+I+ LD+ KL Y GNY ++
Sbjct: 179 EPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSY 238
Query: 318 CKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTD 377
+ + E L + Y +Q ++A + +I R ++K A++A+S+ K L K+ + +
Sbjct: 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASK-AKKAKSRIKRLEKLEARLAEE 297
Query: 378 K-VTTDKTVTFTFPSCGKI-PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGP 435
+ V K + F FP GK V+ +NVS Y D G + ++L F ID R+A+VGP
Sbjct: 298 RPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGY-DGGRLLLKDLSFRIDRGDRIAIVGP 356
Query: 436 NGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495
NGAGKSTLL L+ G+L P G V+ ++ + QH + LD D + L+ + + FP+
Sbjct: 357 NGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQH-RDELDPDKTVLEELSEGFPD-G 414
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
D +E+R +GR+G TG Q P+ LS G+K R++ A L Q P+LLLLDEPTNHLD+E+
Sbjct: 415 DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES 474
Query: 556 IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607
++AL +A+ DFEG ++LVSHD +++VA IW+ E KV ++EG DY E
Sbjct: 475 LEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVE-DKVEEFEGGYEDYLE 525
Score = 135 bits (341), Expect = 1e-33
Identities = 84/321 (26%), Positives = 136/321 (42%), Gaps = 54/321 (16%)
Query: 3 SDAKKKQQQKKKEQAK-GRGAAAPKKPTTSATNDVKPEQITNGVKQEPEEISPEEALCRK 61
+ +K+Q++ KEQ RG AA K A + +K + E + + L +
Sbjct: 251 AAYEKQQKELAKEQEWIRRGKAAASK-AKKAKSRIKRLEKLEARLAEERPVEEGKPLAFR 309
Query: 62 LEADAKLNAEARACTGSLAVHPKSRDV-KIANFSITFHG-CELLQDTMLELNCGRRYGLL 119
K + V + N S + G LL+D ++ G R ++
Sbjct: 310 FPPPGK---------------RLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIV 354
Query: 120 GLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAE 179
G NG+GKSTLL L + V K+ E
Sbjct: 355 GPNGAGKSTLL----------------------------KLLAGELGPLSGTV---KVGE 383
Query: 180 QLVACEDDESQEQLMD---IYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGG 236
+ D+ +++L + + L + D E L GFT E Q+K SGG
Sbjct: 384 TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGG 443
Query: 237 WRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVC 296
+ R+ LA+ L P+LLLLDEPTNHLD+++ LEE L ++ ++++SH + FL+ V
Sbjct: 444 EKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVA 503
Query: 297 TNIIHLDKRKLKYYGGNYEAF 317
T I ++ K++ + G YE +
Sbjct: 504 TRIWLVED-KVEEFEGGYEDY 523
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 490 bits (1263), Expect = e-165
Identities = 242/552 (43%), Positives = 350/552 (63%), Gaps = 29/552 (5%)
Query: 83 PKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-VP 141
P +D+ + NFSI+ G +L+ D + L GR YGL+G NG+GK+T L + + +P
Sbjct: 173 PAIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIP 232
Query: 142 DHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVA------------------ 183
+ I H+ +E+ D +AL CV+ D ER +L + QLVA
Sbjct: 233 KNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGAN 292
Query: 184 ---CEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMR 240
+ D ++L +IY RL+ I A TAEARAA+IL GL FT EMQ K TK FSGGWRMR
Sbjct: 293 KDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMR 352
Query: 241 IALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNII 300
IALARAL+++P LLLLDEPTNHLDL A +WLE L + + +++SH+++FLN V T+I+
Sbjct: 353 IALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDIL 412
Query: 301 HLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQA 360
HL +KL Y G+Y+ F +TR E L+NQ K + + +HM+ +I +F + +AK A
Sbjct: 413 HLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRY-NAKRASLV 471
Query: 361 QSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIP-PPVIMVQNVSFRYSDDGPWIYRN 419
QS+ K L ++ G D V D F FP+ P PP+I + SF Y GP +++N
Sbjct: 472 QSRIKALDRL---GHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYP-GGPLLFKN 527
Query: 420 LEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDL 479
L FGIDLD+R+A+VGPNG GKST+L LI G+L PS G V +++ +R A + QH + LDL
Sbjct: 528 LNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDL 587
Query: 480 DISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539
+PL YM++ FP V + +++R +G +G+TG + P+ LS GQK RV FA + ++ P
Sbjct: 588 SSNPLLYMMRCFPGVPE-QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 646
Query: 540 HLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWE 599
H+LLLDEP+NHLD++ ++AL + F+GG+++VSHD LI+ +E+W+ GKVT +
Sbjct: 647 HILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFH 706
Query: 600 GNILDYKETLRA 611
G DYK+TL++
Sbjct: 707 GTFHDYKKTLQS 718
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 365 bits (939), Expect = e-118
Identities = 200/514 (38%), Positives = 307/514 (59%), Gaps = 16/514 (3%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR------EVPVPDHIDIFHLTREMPA 155
LL + +N G++ GL+G NG GKSTLLA+L N P + + + +E PA
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA 75
Query: 156 SDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANI 215
+ AL V++ D E +LE QL + + I+ +LD I A T +RAA++
Sbjct: 76 LPQPALEYVIDGDREYRQLEA---QLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL 132
Query: 216 LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL 275
LHGLGF+ E ++ DFSGGWRMR+ LA+AL + LLLLDEPTNHLDLDA +WLE+ L
Sbjct: 133 LHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWL 192
Query: 276 KTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWE 335
K+Y+ L++ISH +DFL+ + IIH++++ L Y GNY +F R L Q Y +
Sbjct: 193 KSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQQQAMYESQ 252
Query: 336 QDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKI 395
Q+++AH+++YI RF + K A+QAQS+ K L +M L D F+F + +
Sbjct: 253 QERVAHLQSYIDRFRAKATK-AKQAQSRIKMLERM---ELIAPAHVDNPFHFSFRAPESL 308
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
P P++ ++ VS Y D I +++ + +R+ L+G NGAGKSTL+ L+ G+L P
Sbjct: 309 PNPLLKMEKVSAGYGDR--IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVS 366
Query: 456 GMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV 515
G + ++ + QH E L D SPL ++ + P+ + +++R +G +G G +
Sbjct: 367 GEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELE-QKLRDYLGGFGFQGDKVT 425
Query: 516 CPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSH 575
R+ S G+K R+V A + WQ P+LLLLDEPTNHLD++ AL +A+ DFEG LV+VSH
Sbjct: 426 EETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSH 485
Query: 576 DFRLINQVAEEIWICENGKVTKWEGNILDYKETL 609
D L+ +++++ +GKV ++G++ DY++ L
Sbjct: 486 DRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWL 519
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 281 bits (720), Expect = 3e-87
Identities = 169/523 (32%), Positives = 280/523 (53%), Gaps = 45/523 (8%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTR-------EMPASDKSALTCVM 165
G RYGL+G NG GKST + +LG P ++ + R + + + L V+
Sbjct: 27 GNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVI 86
Query: 166 -------EVDEERVRLEKLAEQLVACEDD-------ESQEQLMDIYDRLDDISADTAEAR 211
EV +ER R+ L E E+D E + MD Y TAEAR
Sbjct: 87 MGHTELWEVKQERDRIYALPE---MSEEDGMKVADLEVKFAEMDGY---------TAEAR 134
Query: 212 AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWL 271
A +L G+G +E + + GW++R+ LA+AL+ P +LLLDEPTN+LD++ WL
Sbjct: 135 AGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWL 194
Query: 272 EEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQ 331
E+ L ++IISH + FLN VCT++ LD +L+ Y GNY+ + + E +
Sbjct: 195 EDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLAD 254
Query: 332 YNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTD-KVTTDKTVTFTFP 390
++ QIA ++++++RF ++K A+QA S+ K + K+ L + K ++ + F
Sbjct: 255 NAKKKAQIAELQSFVSRFSANASK-AKQATSRAKQIDKIK---LEEVKPSSRQNPFIRFE 310
Query: 391 SCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGD 450
K+ + V+N++ + D+GP +++NL ++ RLA++G NG GK+TLL + G+
Sbjct: 311 QDKKLHRNALEVENLTKGF-DNGP-LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE 368
Query: 451 LTPSVGMVRKNSHLRFARYHQ-HLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGL 509
L P G V+ + + Y Q H ++ + D++ D+M Q E D + +R +GR
Sbjct: 369 LEPDSGTVKWSENANIGYYAQDHAYD-FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLF 427
Query: 510 TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG 569
+ ++ LS G+K R++F L Q P++L++DEPTNH+DME+I++L A+ +EG
Sbjct: 428 SQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGT 487
Query: 570 LVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAK 612
L+ VSHD ++ +A I V + G Y+E LR++
Sbjct: 488 LIFVSHDREFVSSLATRIIEITPDGVVDFSGT---YEEYLRSQ 527
Score = 79.2 bits (196), Expect = 2e-15
Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 54/243 (22%)
Query: 429 RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFA--RYHQHLHELLDLDISPLDY 486
R L+G NG GKST + ++ GDL PS G V + + R R Q E + + LD
Sbjct: 29 RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFE----EFTVLDT 84
Query: 487 MLQ----------------SFPEVKDREEMR--KIIGRYG--------------LTG--- 511
++ + PE+ + + M+ + ++ L G
Sbjct: 85 VIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI 144
Query: 512 --RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG 569
Q + +++ G K RV+ A + P +LLLDEPTN+LD+ TI L D +N+
Sbjct: 145 PEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNST 204
Query: 570 LVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE--TL-RAKVLKEKNKSAAVSNG 626
++++SHD +N V + + G++ + GN +Y T R ++L + N
Sbjct: 205 MIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLAD--------NA 256
Query: 627 KKK 629
KKK
Sbjct: 257 KKK 259
Score = 78.4 bits (194), Expect = 3e-15
Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 26/230 (11%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+++ N + F L ++ L L G R ++G NG GK+TLL L E+ PD +
Sbjct: 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG-ELE-PDSGTV- 376
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
S+ + + D D E+ L D + D
Sbjct: 377 ------KWSENANIG-YYAQDHA--------------YDFENDLTLFDWMSQWRQEGDDE 415
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
R L L F+++ +K K SGG + R+ + + KP++L++DEPTNH+D+++
Sbjct: 416 QAVRG--TLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMES 473
Query: 268 CVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
L L+ Y+ L+ +SH ++F++ + T II + + + G YE +
Sbjct: 474 IESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEY 523
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 222 bits (569), Expect = 3e-64
Identities = 173/580 (29%), Positives = 290/580 (50%), Gaps = 60/580 (10%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD----- 142
+ I ++F LL + L + R L+G NG+GKSTL+ +L N EV + D
Sbjct: 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKIL-NGEVLLDDGRIIY 62
Query: 143 --HIDIFHLTREMP-ASDKSALTCVME-VDEERVRLEKLAEQLVACEDDESQE---QLMD 195
+ + L ++ P + + V E ++E+ L++ + E D S++ +L
Sbjct: 63 EQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAK 122
Query: 196 IYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLL 255
+ ++LD + E R +L LG + SGGW + AL RAL P +LL
Sbjct: 123 LQEQLDHHNLWQLENRINEVLAQLGLDPD---AALSSLSGGWLRKAALGRALVSNPDVLL 179
Query: 256 LDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315
LDEPTNHLD++ WLE LKT++ ++ ISH + F+ + T I+ LD+ KL Y GNY+
Sbjct: 180 LDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYD 239
Query: 316 AFCKTRLELLENQMKQYNWEQDQ-IAHMKNYI-----ARF----GHGSA-KLARQAQSKE 364
+ + E L + Q N E D+ +A + +I AR G A K R+ +S+
Sbjct: 240 QYLLEKEEALRVEELQ-NAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKALRRERSER 298
Query: 365 KTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGI 424
+ + G T K+ ++ GKI V ++NV+ Y DG + ++ +
Sbjct: 299 REV-----MG-TAKMQVEEAS-----RSGKI---VFEMENVN--YQIDGKQLVKDFSAQV 342
Query: 425 DLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPL 484
++AL+GPNG GK+TLL L+ G L G + + L A + QH LD + + +
Sbjct: 343 QRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQH-RAELDPEKTVM 401
Query: 485 DYMLQSFPEVKDREEMRKIIG---RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541
D + + EV R ++G + ++ + P++ LS G++ R++ A L + +L
Sbjct: 402 DNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL 461
Query: 542 LLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICE-NGKVTKWEG 600
L+LDEPTN LD+ET++ L + ++ ++G ++LVSHD + ++ E WI E NGK+ ++ G
Sbjct: 462 LILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVG 521
Query: 601 NILDYKE------TLRAKVLKEKN-----KSAAVSNGKKK 629
D ++ L+ +K+K K+ V KK
Sbjct: 522 GYHDARQQQAQYLALKQPAVKKKEEAAAPKAETVKRSSKK 561
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 215 bits (550), Expect = 3e-62
Identities = 170/543 (31%), Positives = 264/543 (48%), Gaps = 66/543 (12%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG------NREVPVPDHIDIFHLTREMP 154
E+L+D L G + G+LGLNG+GKSTLL ++ N E I + +L +E P
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQE-P 77
Query: 155 ASDKSALTCVMEVDEERV--------RLEKLAEQLVACEDD-----ESQEQLMDIYDRLD 201
D + T V E EE V R +++ + + D Q +L +I D D
Sbjct: 78 QLDPT-KT-VRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAAD 135
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTN 261
D A + L TK SGG R R+AL R L KP +LLLDEPTN
Sbjct: 136 AWDLDRKLEIAMDALR----CPPWDADVTK-LSGGERRRVALCRLLLSKPDMLLLDEPTN 190
Query: 262 HLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTR 321
HLD ++ WLE+ L+ Y +V ++H + FL+ V I+ LD+ + + GNY ++ + +
Sbjct: 191 HLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQK 250
Query: 322 LELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLA--KMVNQGLTDKV 379
+ LE + K+ + Q + ++ S K ARQA+SK + ++++Q +
Sbjct: 251 EKRLEQEEKEESARQKALKRELEWVRS----SPK-ARQAKSKARLARYEELLSQEFQKRN 305
Query: 380 TTDKTVTFTFPSCGKIPPP------VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALV 433
T + IPP VI +N+S + D + +L F + + ++
Sbjct: 306 ETAEIY---------IPPGPRLGDKVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVI 354
Query: 434 GPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLD------ISP-LDY 486
GPNGAGKSTL +I G P G ++ ++ A Q + LD + IS LD
Sbjct: 355 GPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQS-RDALDPNKTVWEEISGGLDI 413
Query: 487 MLQSFPEVKDREEM-RKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545
+ ++ RE R +GR+ G Q + QLS G++ RV A ++LLLD
Sbjct: 414 I-----QLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLD 468
Query: 546 EPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICE-NGKVTKWEGNILD 604
EPTN LD+ET+ AL +A+ +F G V++SHD ++++A I E + V +EGN +
Sbjct: 469 EPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSE 528
Query: 605 YKE 607
Y+E
Sbjct: 529 YEE 531
Score = 81.1 bits (201), Expect = 5e-16
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHD 576
+ +LS G++ RV L P +LLLDEPTNHLD E++ L + ++ G +V V+HD
Sbjct: 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHD 217
Query: 577 FRLINQVAEEIWICE--NGKVTKWEGNILDYKETLRAKVLKEKNKSAA 622
++ VA WI E G+ WEGN + E ++ +E+ + +A
Sbjct: 218 RYFLDNVAG--WILELDRGRGIPWEGNYSSWLEQKEKRLEQEEKEESA 263
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 196 bits (501), Expect = 3e-55
Identities = 168/534 (31%), Positives = 259/534 (48%), Gaps = 80/534 (14%)
Query: 117 GLLGLNGSGKSTLLAVLG------NREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEE 170
G+LGLNG+GKSTLL ++ E I + +L +E P D T V E EE
Sbjct: 37 GVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQE-PQLDPE-KT-VRENVEE 93
Query: 171 RV--------RLEKLAEQLVACEDD-----ESQEQLMDIYDRLDDISADTAEARAANILH 217
V R ++ + D Q +L +I D D D+ A + L
Sbjct: 94 GVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALR 153
Query: 218 GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT 277
K TK SGG R R+AL R L KP +LLLDEPTNHLD ++ WLE+ L
Sbjct: 154 ----CPPWDAKVTK-LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHD 208
Query: 278 YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQD 337
Y +V ++H + FL+ V I+ LD+ + + GNY ++ + + + L + KQ Q
Sbjct: 209 YPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKAKRLAQEEKQEAARQK 268
Query: 338 QIAHMKNYIARFGHGSAKLARQAQSKEKTLA---KMVNQGLTDKVTTDKTVTFTFPSCGK 394
+ ++ + S K ARQA+SK + LA +++++ + T++
Sbjct: 269 ALKRELEWVRQ----SPK-ARQAKSKAR-LARYEELLSEEYQKRNETNEIF--------- 313
Query: 395 IPPP------VIMVQNVSFRYSDDGPWIYRNLEF-----GIDLDTRLALVGPNGAGKSTL 443
IPP VI +N+S + D + +L F GI + ++GPNGAGKSTL
Sbjct: 314 IPPGPRLGDKVIEAENLSKSFGDR--LLIDDLSFSLPPGGI-----VGIIGPNGAGKSTL 366
Query: 444 LNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLD------ISP-LDYMLQSFPEVKD 496
+I G P G ++ ++ A Q + LD + IS LD + +V +
Sbjct: 367 FKMITGQEQPDSGTIKIGETVKLAYVDQS-RDALDPNKTVWEEISGGLDII-----KVGN 420
Query: 497 REEM--RKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
R E+ R +GR+ G Q + LS G++ R+ A Q ++LLLDEPTN LD+E
Sbjct: 421 R-EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVE 479
Query: 555 TIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICE-NGKVTKWEGNILDYKE 607
T+ AL +A+ +F G V++SHD ++++A I E + +V +EGN +Y+E
Sbjct: 480 TLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 171 bits (436), Expect = 1e-50
Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 51/195 (26%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I ++N+S Y + +++ I+ R+ LVG NGAGKSTLL LI G+L P G+V
Sbjct: 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
S ++ + Q
Sbjct: 59 WGSTVKIGYFEQ------------------------------------------------ 70
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRL 579
LS G+K R+ A L + P+LLLLDEPTNHLD+E+I+AL +A+ ++ G ++LVSHD
Sbjct: 71 -LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYF 129
Query: 580 INQVAEEIWICENGK 594
++QVA +I E+GK
Sbjct: 130 LDQVATKIIELEDGK 144
Score = 130 bits (329), Expect = 2e-35
Identities = 39/74 (52%), Positives = 52/74 (70%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFL 292
SGG +MR+ALA+ L P+LLLLDEPTNHLDL++ LEE LK Y ++++SH + FL
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130
Query: 293 NGVCTNIIHLDKRK 306
+ V T II L+ K
Sbjct: 131 DQVATKIIELEDGK 144
Score = 61.7 bits (151), Expect = 2e-11
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP 139
+++ N S T+ G LL+D L +N G R GL+G NG+GKSTLL ++ P
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP 52
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 113 bits (286), Expect = 2e-28
Identities = 69/223 (30%), Positives = 102/223 (45%), Gaps = 32/223 (14%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
P+I V+N++ Y + ++ ++ AL+GPNGAGKSTLL I G L PS G
Sbjct: 2 MPMIEVENLTVSY--GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG 59
Query: 457 MVR--------KNSHLRFARYHQHLHELLDLDISPLDYM---------LQSFPEVKDREE 499
++ + LR Q I+ D + KD+E+
Sbjct: 60 EIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 500 MRKIIGRYGLTG---RQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMET 555
+ + + R G+ RQ I +LS GQK RV+ A LA Q P LLLLDEP +D+
Sbjct: 120 VDEALERVGMEDLRDRQ----IGELSGGQKQRVLLARALA-QNPDLLLLDEPFTGVDVAG 174
Query: 556 IDALADAINDF--EGGLVL-VSHDFRLINQVAEEIWICENGKV 595
+ D + + EG VL V+HD L+ + + IC N +
Sbjct: 175 QKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRV-ICLNRHL 216
Score = 69.2 bits (170), Expect = 5e-13
Identities = 60/253 (23%), Positives = 101/253 (39%), Gaps = 66/253 (26%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLG------------ 134
+++ N ++++ +L+D L + G L+G NG+GKSTLL A+LG
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIF 64
Query: 135 NREVP----------VPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVAC 184
+ V VP + R P + V +V V L + +
Sbjct: 65 GKPVRKRRKRLRIGYVPQK---SSVDRSFPIT-------VKDV----VLLGRYGK----- 105
Query: 185 EDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDF---SGGWRMRI 241
+ RL+ D + A L +G M+ + + SGG + R+
Sbjct: 106 ---------KGWFRRLN--KKDKEKVDEA--LERVG----MEDLRDRQIGELSGGQKQRV 148
Query: 242 ALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK---RILVIISHSQDFLNGVCTN 298
LARAL P LLLLDEP +D+ + + LK + + +++++H +
Sbjct: 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDR 208
Query: 299 IIHLDKRKLKYYG 311
+I L R L G
Sbjct: 209 VICL-NRHLIASG 220
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 109 bits (276), Expect = 2e-27
Identities = 61/219 (27%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461
++N+SF Y D ++ I + +VGPNG+GKSTLL L+ G L P+ G V +
Sbjct: 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61
Query: 462 ----SHLRFARYHQHL--------HELL------DLDISPLDYMLQSFPEVKDREEMRKI 503
+ L + + + ++ + L EE+ +
Sbjct: 62 GKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-------PEEEIEER 114
Query: 504 IG----RYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLDMETIDA 558
+ GL G + LS GQK RV A LA P +LLLDEPT LD
Sbjct: 115 VEEALELVGLEGLRDR-SPFTLSGGQKQRVAIAGVLA-MDPDILLLDEPTAGLDPAGRRE 172
Query: 559 LADAINDF--EG-GLVLVSHDFRLINQVAEEIWICENGK 594
L + + EG +++V+HD L+ ++A+ + + E+GK
Sbjct: 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
Score = 84.4 bits (210), Expect = 1e-18
Identities = 58/235 (24%), Positives = 91/235 (38%), Gaps = 47/235 (20%)
Query: 92 NFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHL 149
N S ++ L D L + G ++G NGSGKSTLL +L P + +
Sbjct: 4 NLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD-- 61
Query: 150 TREMPASDKSALTCVMEVDEERVRLEKLAE-----------QLVAC--EDDE--SQEQLM 194
D ++ L++L Q E++ E L
Sbjct: 62 ----------------GKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG 105
Query: 195 DIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLL 254
+ + E R L +G + ++ + SGG + R+A+A L + P +L
Sbjct: 106 --------LPEEEIEERVEEALELVGL-EGLRDRSPFTLSGGQKQRVAIAGVLAMDPDIL 156
Query: 255 LLDEPTNHLDLDACVWLEEELKTYKR---ILVIISHSQDFLNGVCTNIIHLDKRK 306
LLDEPT LD L E LK K ++I++H D L + +I L+ K
Sbjct: 157 LLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 105 bits (266), Expect = 2e-26
Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 49/211 (23%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-- 459
V+N+S Y G + +L I+ + ++GPNGAGKSTLL + G L PS G +
Sbjct: 2 VENLSVGY--GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD 59
Query: 460 -----KNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQ 513
S AR ++ + L+ L ++ L DR
Sbjct: 60 GKDLASLSPKELARKIAYVPQALELLGLAHL----------ADR---------------- 93
Query: 514 QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD-------METIDALADAINDF 566
P +LS G++ RV+ A Q P +LLLDEPT+HLD +E + LA
Sbjct: 94 ---PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERG-- 148
Query: 567 EGGLVLVSHDFRLINQVAEEIWICENGKVTK 597
+V+V HD L + A+ + + ++G++
Sbjct: 149 -KTVVMVLHDLNLAARYADRVILLKDGRIVA 178
Score = 74.8 bits (185), Expect = 2e-15
Identities = 56/229 (24%), Positives = 89/229 (38%), Gaps = 55/229 (24%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDIF 147
++ N S+ + G +L D L + G G+LG NG+GKSTLL + G + P I +
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLD 59
Query: 148 -HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISAD 206
+ + + + E + L LA++ ++ L
Sbjct: 60 GKDLASLSPKELARKIAYVPQALELLGLAHLADR---------------PFNEL------ 98
Query: 207 TAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266
SGG R R+ LARAL +P +LLLDEPT+HLD+
Sbjct: 99 ---------------------------SGGERQRVLLARALAQEPPILLLDEPTSHLDIA 131
Query: 267 ACVWLEEELKTYKR---ILVIIS-HSQDFLNGVCTNIIHLDKRKLKYYG 311
+ L E L+ R V++ H + +I L ++ G
Sbjct: 132 HQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 105 bits (264), Expect = 3e-26
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 54/210 (25%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +NVSF Y + +++ I ++A+VGP+G+GKSTLL L+ P+ G +
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCP-- 517
+ D+ L D E +RK I P
Sbjct: 61 IDGV----------------DLRDL-----------DLESLRKNIA---------YVPQD 84
Query: 518 -------IRQ--LSDGQKCRVVFA--YLAWQAPHLLLLDEPTNHLDMETIDALADAINDF 566
IR+ LS GQ+ R+ A L + P +L+LDE T+ LD ET + +A+
Sbjct: 85 PFLFSGTIRENILSGGQRQRIAIARALL--RDPPILILDEATSALDPETEALILEALRAL 142
Query: 567 EGG--LVLVSHDFRLINQVAEEIWICENGK 594
G +++++H I A+ I + ++G+
Sbjct: 143 AKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171
Score = 61.6 bits (151), Expect = 4e-11
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 17/83 (20%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVII 285
SGG R RIA+ARAL P +L+LDE T+ LD L+A L K + +++I
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA---LRALAK--GKTVIVI 151
Query: 286 SHSQDFLNGV--CTNIIHLDKRK 306
+H L+ + II LD +
Sbjct: 152 AHR---LSTIRDADRIIVLDDGR 171
Score = 37.4 bits (88), Expect = 0.008
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
+L+D L + G + ++G +GSGKSTLL +L
Sbjct: 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLL 48
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 105 bits (265), Expect = 5e-26
Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 26/203 (12%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-- 459
V++++ Y G + ++ F + LA+VGPNGAGKSTLL I G L P+ G +R
Sbjct: 2 VEDLTVSY--GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF 59
Query: 460 ----KNSHLRFARYHQHLHELLDLDISPLDYML---------QSFPEVKDREEMRKIIGR 506
+ R Q D IS D +L D+ ++ + + R
Sbjct: 60 GKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALER 119
Query: 507 YGLTG-RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND 565
GL+ + I +LS GQ+ RV+ A Q P LLLLDEP +D +T + + + + +
Sbjct: 120 VGLSELADR--QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRE 177
Query: 566 F--EG-GLVLVSHDFRLINQVAE 585
EG +++V+HD + V E
Sbjct: 178 LRREGMTILVVTHD---LGLVLE 197
Score = 61.8 bits (151), Expect = 7e-11
Identities = 50/242 (20%), Positives = 89/242 (36%), Gaps = 55/242 (22%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL--------------AVLG 134
++ + ++++ G +L+D E+ G ++G NG+GKSTLL V G
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 135 NREVPVPDHI----DIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQ 190
I + R+ P S +V
Sbjct: 61 KPLEKERKRIGYVPQRRSIDRDFPIS---------------------VRDVV-------- 91
Query: 191 EQLMDIYDRLDDISADTAEARAANILHGLGFT--KEMQQKKTKDFSGGWRMRIALARALY 248
LM +Y + +A + L E+ ++ + SGG + R+ LARAL
Sbjct: 92 --LMGLYGHKGLFRRLSKADKAK-VDEALERVGLSELADRQIGELSGGQQQRVLLARALV 148
Query: 249 VKPHLLLLDEPTNHLDLDAC---VWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKR 305
P LLLLDEP +D L EL+ +++++H + ++ L++
Sbjct: 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208
Query: 306 KL 307
+
Sbjct: 209 VV 210
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 105 bits (265), Expect = 9e-26
Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 34/226 (15%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG- 456
+I +N+SFRY +++ I+ R+ L+GPNG+GKSTLL L+ G L P+ G
Sbjct: 2 RMIEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60
Query: 457 ---------------MVRKNSHLRF-ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEM 500
+R+ L F Q ++ ++ + L++ REE+
Sbjct: 61 VLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEV---AFGLENLGL--PREEI 115
Query: 501 RKIIGRY----GLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLDMET 555
+ + GL P LS GQK RV A LA P +LLLDEPT LD +
Sbjct: 116 EERVAEALELVGLEELLDR-PPFNLSGGQKQRVAIAGVLAMG-PEILLLDEPTAGLDPKG 173
Query: 556 IDALADAINDF--EGG--LVLVSHDFRLINQVAEEIWICENGKVTK 597
L + + EGG +++V+HD L+ + A+ + + ++GK+
Sbjct: 174 RRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA 219
Score = 84.6 bits (210), Expect = 2e-18
Identities = 68/246 (27%), Positives = 96/246 (39%), Gaps = 45/246 (18%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG------NREVPVPDHIDIFHLTRE 152
L+D LE+ G R L+G NGSGKSTLL +L + EV V D +D
Sbjct: 16 RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV-DGLDTSSEKSL 74
Query: 153 MPASDKSALT--------CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDIS 204
+ K L V++E V L
Sbjct: 75 LELRQKVGLVFQNPDDQLFGPTVEDE-VAFGLENLGL----------------------P 111
Query: 205 ADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+ E R A L +G E+ + + SGG + R+A+A L + P +LLLDEPT LD
Sbjct: 112 REEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 265 LDACVWLEEELKTYKR----ILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKT 320
L E LK K ++I++H + + ++ LD K+ G E F
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF--N 228
Query: 321 RLELLE 326
ELL
Sbjct: 229 DAELLL 234
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 102 bits (258), Expect = 2e-25
Identities = 59/210 (28%), Positives = 94/210 (44%), Gaps = 55/210 (26%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461
V+N+S RY ++ ++ L+GPNGAGK+TL+ +I G L P G ++
Sbjct: 3 VRNLSKRY--GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK-- 58
Query: 462 SHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRY---------GLTGR 512
+L DI K+ EE+++ IG Y LT R
Sbjct: 59 --------------VLGKDI------------KKEPEEVKRRIG-YLPEEPSLYENLTVR 91
Query: 513 QQVCPIRQLSDGQKCRVVFAYLAWQA----PHLLLLDEPTNHLDMETIDALADAINDF-- 566
+ + +LS G K R+ A QA P LL+LDEPT+ LD E+ + + +
Sbjct: 92 ENL----KLSGGMKQRLALA----QALLHDPELLILDEPTSGLDPESRREFWELLRELKK 143
Query: 567 EGGLVLV-SHDFRLINQVAEEIWICENGKV 595
EG +L+ SH ++ + + I NG++
Sbjct: 144 EGKTILLSSHILEEAERLCDRVAILNNGRI 173
Score = 71.7 bits (177), Expect = 1e-14
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR---ILVIISHS 288
SGG + R+ALA+AL P LL+LDEPT+ LD ++ E L+ K+ +++ SH
Sbjct: 95 KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154
Query: 289 QDFLNGVCTNIIHLDKRKL 307
+ +C + L+ ++
Sbjct: 155 LEEAERLCDRVAILNNGRI 173
Score = 44.3 bits (106), Expect = 3e-05
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
+++ N S + L D L + G YGLLG NG+GK+TL+ ++
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKII 46
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 102 bits (256), Expect = 2e-25
Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 45/197 (22%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461
++N+SFRY G N+ + +ALVGPNG+GKSTLL I G L P+ G +
Sbjct: 2 IENLSFRY--GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL-- 57
Query: 462 SHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQL 521
+ DI+ L EE+R+ IG + QL
Sbjct: 58 --------------IDGKDIAKLP-----------LEELRRRIGY-----------VPQL 81
Query: 522 SDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMETIDALADAINDF-EGG--LVLVSHDF 577
S GQ+ RV A L P LLLLDEPT+ LD + + L + + + E G +++V+HD
Sbjct: 82 SGGQRQRVALARALL-LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 578 RLINQVAEEIWICENGK 594
L A+ + + ++GK
Sbjct: 141 ELAELAADRVIVLKDGK 157
Score = 74.6 bits (184), Expect = 1e-15
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHSQ 289
SGG R R+ALARAL + P LLLLDEPT+ LD + L E L+ R ++I++H
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 290 DFLNGVCTNIIHLDKRK 306
+ +I L K
Sbjct: 141 ELAELAADRVIVLKDGK 157
Score = 45.3 bits (108), Expect = 1e-05
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP 139
+I N S + G L + L L G L+G NGSGKSTLL + P
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP 51
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 109 bits (275), Expect = 3e-25
Identities = 122/563 (21%), Positives = 216/563 (38%), Gaps = 115/563 (20%)
Query: 88 VKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTL-LAVLG-NREVPVP 141
+++ N ++ F ++D E+ G G++G +GSGKSTL LA++G E
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 142 DHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQE---------- 191
++ R++ L+ E + ++R +++A ++ Q+
Sbjct: 66 TSGEVILDGRDL-----LGLS---EREMRKLRGKRIA--MIF------QDPMTSLNPVMT 109
Query: 192 ---QLMDIYDRLDDISADTAEARAANILHGLGFT-KEMQQKKTKDFSGGWRMRIALARAL 247
Q+ + S A RA +L +G E + + SGG R R+ +A AL
Sbjct: 110 IGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMAL 169
Query: 248 YVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNII 300
+KP LL+ DEPT LD LD L+ EL ++ I+H + + ++
Sbjct: 170 ALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGM---AVLFITHDLGVVAELADRVV 226
Query: 301 HLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQA 360
+ K ++ G E+L N Y + +A A G K+ R
Sbjct: 227 VMYKGEIVETG--------PTEEILSNPQHPY--TRGLLA------AVPRLGDEKIIRLP 270
Query: 361 QSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCG----KIPPPVIMVQNVSFRYSDDGPWI 416
+ ++ V + ++ + S + V V +VSF +
Sbjct: 271 RRGPLRAEPLL------SV---RNLSKRYGSRKGLFVRERGEVKAVDDVSFD-------L 314
Query: 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHEL 476
G L LVG +G+GKSTL ++ G L PS G + + +
Sbjct: 315 RE----G----ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 477 LDLDI------SPLDYMLQ---------SFPEVKDREEMRKIIGR-YGLTG-RQQVCP-- 517
+ + S L+ + E R + L G +
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRY 426
Query: 518 IRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLD----METIDALADAINDFEGGLVL 572
+LS GQ+ RV A LA P LL+LDEP + LD + ++ L D + +
Sbjct: 427 PHELSGGQRQRVAIARALA-LEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLF 485
Query: 573 VSHDFRLINQVAEEIWICENGKV 595
+SHD ++ +A+ + + +G++
Sbjct: 486 ISHDLAVVRYIADRVAVMYDGRI 508
Score = 79.2 bits (196), Expect = 2e-15
Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 50/239 (20%)
Query: 398 PVIMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
P++ V+N++ ++ DG + R++ F ++ L +VG +G+GKSTL + G L P
Sbjct: 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMG-LLPEG 62
Query: 456 GMVRKNSHLRFARYHQHLHELLDLDISPLD--------YMLQ----SFPEV--------- 494
G + + R +LL L + + Q S V
Sbjct: 63 GRITSGEVILDGR------DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIRE 116
Query: 495 -----------KDREEMRKIIGRYGL--TGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPH 540
+ R+ +++ + GL R+ P QLS G + RV+ A LA + P
Sbjct: 117 ALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP-HQLSGGMRQRVMIAMALALK-PK 174
Query: 541 LLLLDEPTNHLDMET----IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
LL+ DEPT LD+ T +D L D + ++ ++HD ++ ++A+ + + G++
Sbjct: 175 LLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 101 bits (253), Expect = 7e-25
Identities = 67/204 (32%), Positives = 99/204 (48%), Gaps = 39/204 (19%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+ V+NVSFRY P + RN+ F I+ LA++GP+G+GKSTL LI G L P+ G VR
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 460 KNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCP- 517
LD DIS D E+ +G Y L ++
Sbjct: 61 -----------------LDGADISQW-----------DPNELGDHVG-Y-LPQDDELFSG 90
Query: 518 -IRQ--LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG---LV 571
I + LS GQ+ R+ A + P +L+LDEP +HLD+E AL AI + +
Sbjct: 91 SIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRI 150
Query: 572 LVSHDFRLINQVAEEIWICENGKV 595
+++H + A+ I + E+G+V
Sbjct: 151 VIAHRPETLAS-ADRILVLEDGRV 173
Score = 67.2 bits (165), Expect = 5e-13
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISH 287
SGG R R+ LARALY P +L+LDEP +HLD++ L + LK ++I+H
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH 154
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 103 bits (259), Expect = 9e-25
Identities = 71/263 (26%), Positives = 108/263 (41%), Gaps = 73/263 (27%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
++ V+N+SF Y G I +L F I ++GPNG+GKSTLL + G L P G
Sbjct: 1 MMLEVENLSFGY--GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58
Query: 458 VRKNSHLRFARYHQHLHELLDLDISPLD---------YMLQSF----------------- 491
V L DI+ L Y+ QS
Sbjct: 59 VL----------------LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY 102
Query: 492 --------PEVKDREEMRKIIGRYGLT---GRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540
P +D E + + + GL R P+ +LS G++ RV+ A Q
Sbjct: 103 PHLGLFGRPSKEDEEIVEEALELLGLEHLADR----PVDELSGGERQRVLIARALAQETP 158
Query: 541 LLLLDEPTNHLD-------METIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENG 593
+LLLDEPT+HLD +E + L +V+V HD L + A+ + + ++G
Sbjct: 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKG---LTVVMVLHDLNLAARYADHLILLKDG 215
Query: 594 KVTKWEGNILDYKETLRAKVLKE 616
K+ +G +E L + L+E
Sbjct: 216 KIVA-QGTP---EEVLTEENLRE 234
Score = 54.9 bits (133), Expect = 3e-08
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
D A L LG + + + + SGG R R+ +ARAL + +LLLDEPT+HL
Sbjct: 113 KEDEEIVEEA--LELLG-LEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHL 169
Query: 264 D-------LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312
D L+ L E +V++ H + ++I L K+ G
Sbjct: 170 DIAHQIEVLELLRDLNRE---KGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
Score = 38.7 bits (91), Expect = 0.006
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL 130
+++ N S + G +L D + G G+LG NGSGKSTLL
Sbjct: 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLL 45
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 98.3 bits (246), Expect = 2e-23
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 16/211 (7%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG--M 457
+ ++N++ Y +L + L+G NGAGK+T L ++ G+L P+ G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 458 VRKNSHLRFARY-HQHL-----HELLDLDISPLDYM-----LQSFPEVKDREEMRKIIGR 506
+ S + Q L + L +++ +++ L+ P+ + +EE+ ++
Sbjct: 61 INGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRV 120
Query: 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF 566
GLT + R LS G K ++ A P +LLLDEPT+ LD + A+ D I +
Sbjct: 121 LGLTD-KANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV 179
Query: 567 EGG--LVLVSHDFRLINQVAEEIWICENGKV 595
G ++L +H + + I I +GK+
Sbjct: 180 RKGRSIILTTHSMDEAEALCDRIAIMSDGKL 210
Score = 71.0 bits (175), Expect = 6e-14
Identities = 58/232 (25%), Positives = 98/232 (42%), Gaps = 26/232 (11%)
Query: 88 VKIANFSITFHGCEL--LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHID 145
++I N + T+ + D L + G +GLLG NG+GK+T L +L P
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGT 58
Query: 146 IFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISA 205
+ + K+A + + ++L + + + Y RL +
Sbjct: 59 AYINGYSIRTDRKAARQSLGYCPQFDALFDEL-----------TVREHLRFYARLKGLPK 107
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
+ +L LG T + K+ + SGG + +++LA AL P +LLLDEPT L
Sbjct: 108 SEIKEEVELLLRVLGLTDK-ANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT--SGL 164
Query: 266 DAC----VW--LEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
D +W + E K R +++ +HS D +C I + KL+ G
Sbjct: 165 DPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIG 214
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 99.3 bits (248), Expect = 5e-23
Identities = 59/236 (25%), Positives = 108/236 (45%), Gaps = 28/236 (11%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
VI V+N++ +Y D + + F ++ L+GPNGAGK+TLL ++ G L P+ G
Sbjct: 3 EVIEVRNLTKKYGGDKTAL-DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE 61
Query: 458 VRKNSHLRFARYHQHLHEL--------LDLDISPLDYM-----LQSFPEVKDREEMRKII 504
+ + + + L +++ + + L + + E + +++
Sbjct: 62 ILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 505 GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA----PHLLLLDEPTNHLDMETIDALA 560
+GL + +R LS G K R+ A A P LL+LDEPT+ LD E+ +
Sbjct: 122 ELFGLEDKANK-KVRTLSGGMKQRLSIA----LALLHDPELLILDEPTSGLDPESRREIW 176
Query: 561 DAINDF--EGG--LVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAK 612
+ + + EGG ++L +H ++ + + I +GK+ EG + KE K
Sbjct: 177 ELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKII-AEGTPEELKEKFGGK 231
Score = 96.6 bits (241), Expect = 4e-22
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 21/230 (9%)
Query: 88 VKIANFSITFHGC-ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146
+++ N + + G L E+ G +GLLG NG+GK+TLL +L P I +
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 147 F-HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISA 205
+ + PA + + V + L +L + ++ + RL +S
Sbjct: 65 LGYDVVKEPAKVRRRIGYVPQEPS-------LYPELTV-------RENLEFFARLYGLSK 110
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
+ AE R +L G + KK + SGG + R+++A AL P LL+LDEPT+ LD
Sbjct: 111 EEAEERIEELLELFGLEDKAN-KKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDP 169
Query: 266 DACVWLEEELKTYKR----ILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
++ + E L+ + +++ +H + +C +I L+ K+ G
Sbjct: 170 ESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG 219
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 101 bits (254), Expect = 1e-22
Identities = 127/567 (22%), Positives = 224/567 (39%), Gaps = 116/567 (20%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHID-I 146
+++ N + F G E+L++ + G G+LG +G+GKS L+ VL + P I
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 147 FHLTR-------EMPASD-KSALTCVMEVDEERVRLEKLAEQLVACEDD----------- 187
+H+ E P+ + C ++ E V L+++L
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 188 --ESQEQLMDIYDRLDDI--SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243
L ++ + L++I A RA +++ + + + +D SGG + R+ L
Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITH-IARDLSGGEKQRVVL 179
Query: 244 ARALYVKPHLLLLDEPTNHLDLDACVW----LEEELKTYKRILVIISHSQDFLNGVCTNI 299
AR L +P L L DEPT LD LEE +K +V+ SH + + +
Sbjct: 180 ARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239
Query: 300 IHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQ-DQIAHMKNYIARFGHGSAKLAR 358
I L+ ++K G E +E + K+ E + I ++N +++
Sbjct: 240 IWLENGEIKEEGTPDEVVAVF-MEGVSEVEKECEVEVGEPIIKVRN-----------VSK 287
Query: 359 QAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYR 418
+ S ++ + K V+ NVS +
Sbjct: 288 RYISVDRGVVKAVD-------------------------------NVSLE-------VKE 309
Query: 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG------------MVRKNSHL-- 464
FGI VG +GAGK+TL +I G L P+ G M +
Sbjct: 310 GEIFGI--------VGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 465 RFARYHQHLHELLDL--DISPLDYMLQSFP-EVKDREEMRKIIGRYGLTG-----RQQVC 516
R RY LH+ DL + LD + ++ E+ D K + + G +++
Sbjct: 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEIL 421
Query: 517 P--IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAI----NDFEGGL 570
+LS+G++ RV A + + P +++LDEPT +D T + +I + E
Sbjct: 422 DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTF 481
Query: 571 VLVSHDFRLINQVAEEIWICENGKVTK 597
++VSHD + V + + +GK+ K
Sbjct: 482 IIVSHDMDFVLDVCDRAALMRDGKIVK 508
Score = 57.1 bits (138), Expect = 1e-08
Identities = 60/235 (25%), Positives = 103/235 (43%), Gaps = 42/235 (17%)
Query: 84 KSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL--------GN 135
K R+V S+ + + + LE+ G +G++G +G+GK+TL ++ G
Sbjct: 281 KVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGE 340
Query: 136 REVPVPDHIDIFHLTREMPASDKSALTCVMEVDEE------RVRLEKLAEQLVACEDDES 189
V V D + +T+ P A + + +E R L+ L E +
Sbjct: 341 VNVRVGD--EWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIG------- 391
Query: 190 QEQLMDIYDRLDDISADTAEARAANILHGLGFT----KEMQQKKTKDFSGGWRMRIALAR 245
+++ D L A +A L +GF +E+ K + S G R R+ALA+
Sbjct: 392 ----LELPDEL-------ARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQ 440
Query: 246 ALYVKPHLLLLDEPTNHLDLDACVWLEEE-LKTYKRI---LVIISHSQDFLNGVC 296
L +P +++LDEPT +D V + LK + + +I+SH DF+ VC
Sbjct: 441 VLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVC 495
Score = 52.5 bits (126), Expect = 4e-07
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 519 RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETI----DALADAINDFEGGLVLVS 574
R LS G+K RVV A + P L L DEPT LD +T +AL +A+ +VL S
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 575 HDFRLINQVAEE-IWICENGKVTKWEGN 601
H +I ++++ IW+ ENG++ + EG
Sbjct: 227 HWPEVIEDLSDKAIWL-ENGEIKE-EGT 252
>gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter. This domain is related to
pfam00005.
Length = 85
Score = 86.9 bits (216), Expect = 8e-21
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 300 IHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQ 359
+ L+ KL Y GNY + + + E LE Q K Y +Q +I ++ +I RF ++K A+Q
Sbjct: 1 LELENGKLTTYKGNYSQYLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASK-AKQ 59
Query: 360 AQSKEKTLAKM 370
AQS+ K L KM
Sbjct: 60 AQSRIKALEKM 70
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 96.1 bits (240), Expect = 1e-20
Identities = 61/222 (27%), Positives = 92/222 (41%), Gaps = 34/222 (15%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +NVSFRY D P + +L I ++A+VG +G+GKSTLL L+ G P G +
Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531
Query: 460 KNSH------LRFARYHQ---HLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLT 510
+ L R Q L + S + + PE D E + L
Sbjct: 532 LDGVDLNDIDLASLR-RQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQ----LA 586
Query: 511 GRQQVCPIRQ---------------LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
G + I LS GQ+ R+ A P +LLLDE T+ LD ET
Sbjct: 587 GAHEF--IENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET 644
Query: 556 IDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKV 595
+ + G +++++H I A+ I + + GK+
Sbjct: 645 EAIILQNLLQILQGRTVIIIAHRLSTIRS-ADRIIVLDQGKI 685
Score = 80.3 bits (199), Expect = 1e-15
Identities = 67/267 (25%), Positives = 101/267 (37%), Gaps = 50/267 (18%)
Query: 68 LNAEARACTGSLAVHPKSRDVKIA----NFSITFHGCELLQDTMLELNCGRRYGLLGLNG 123
L+ +H +I +F +L+D LE+ G + ++G +G
Sbjct: 450 LDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSG 509
Query: 124 SGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVA 183
SGKSTLL +L P I + D VD + L L Q+
Sbjct: 510 SGKSTLLKLLLGLYKPQQGRILL----------D--------GVDLNDIDLASLRRQVGY 551
Query: 184 CEDDESQEQLM---DIYD--RLDDISADTAEA-RAANILHGLGFTKEMQQK-------KT 230
Q+ + I + L + A E AA + F + +
Sbjct: 552 V----LQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGG 607
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY------KRILVI 284
+ SGG R R+ALARAL KP +LLLDE T+ LD + E + R ++I
Sbjct: 608 ANLSGGQRQRLALARALLSKPKILLLDEATSALDPET----EAIILQNLLQILQGRTVII 663
Query: 285 ISHSQDFLNGVCTNIIHLDKRKLKYYG 311
I+H + II LD+ K+ G
Sbjct: 664 IAH-RLSTIRSADRIIVLDQGKIVEQG 689
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 90.4 bits (225), Expect = 2e-20
Identities = 66/224 (29%), Positives = 103/224 (45%), Gaps = 26/224 (11%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
+I +NVS Y G R++ F I + L GP+GAGKSTLL LIYG+ P+ G +
Sbjct: 1 MIRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 459 R---------KNSHLRFARYH-----QHLHELLDLDIS-----PLDYMLQSFPEVKDREE 499
K + F R Q L D + PL + P + R
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLR--VIGKPPREIRRR 117
Query: 500 MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET---I 556
+ +++ GL + + P QLS G++ RV A P +LL DEPT +LD + I
Sbjct: 118 VSEVLDLVGLKHKARALPS-QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEI 176
Query: 557 DALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
L + IN +++ +HD L+N++ + E+G++ + E
Sbjct: 177 MRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220
Score = 45.3 bits (108), Expect = 3e-05
Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 51/236 (21%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI--FHLTREMPAS 156
G E L+D + G L G +G+GKSTLL ++ E P I + L+R +
Sbjct: 14 GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSR-LKGR 72
Query: 157 DKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMD--IYD------RLDDISADTA 208
+ L + V + RL L D +Y+ R+
Sbjct: 73 EIPFLRRQIGVVFQDFRL------------------LPDRTVYENVALPLRVIGKPPREI 114
Query: 209 EARAANILH--GLGFTKEMQQKKTKDF----SGGWRMRIALARALYVKPHLLLLDEPTNH 262
R + +L GL K + SGG + R+A+ARA+ +P +LL DEPT +
Sbjct: 115 RRRVSEVLDLVGLK-------HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGN 167
Query: 263 LDLDACVWLEEELKTYKRI------LVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312
LD D E ++ ++ I +++ +H + +N + ++ L+ +L
Sbjct: 168 LDPDLS---WEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 94.3 bits (235), Expect = 3e-20
Identities = 66/216 (30%), Positives = 95/216 (43%), Gaps = 29/216 (13%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
P P + VS Y P + R + F + R+ALVGP+GAGKSTLLNL+ G + P+
Sbjct: 318 PAPSLEFSGVSVAYPGRRPAL-RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE 376
Query: 456 GMVRKNS-----------HLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKII 504
G + N + A QH + + + + P+ D E+R+ +
Sbjct: 377 GSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG---TIAENIRLARPDASD-AEIREAL 432
Query: 505 GRYGLTGRQQVCPI----------RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
R GL P LS GQ R+ A + LLLLDEPT HLD E
Sbjct: 433 ERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAE 492
Query: 555 TIDALADAINDFEGG--LVLVSHDFRLINQVAEEIW 588
T + +A+ G ++LV+H L +A+ I
Sbjct: 493 TEAEVLEALRALAQGRTVLLVTHRLALA-ALADRIV 527
Score = 69.6 bits (171), Expect = 2e-12
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 50/226 (22%)
Query: 85 SRDVKIANFSITFHGC-ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143
+ ++ + S+ + G L+ + G R L+G +G+GKSTLL
Sbjct: 319 APSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLL------------- 365
Query: 144 IDIFHLTREMPASDKSALTCVMEVDEERVRL--EKLAEQLVACEDDE----SQEQLM--- 194
+ L ++ E + + LA+ D+ Q +
Sbjct: 366 ---------------NLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG 410
Query: 195 DIYD--RLDDISADTAEARAANILHGL-GFTKEMQQ-------KKTKDFSGGWRMRIALA 244
I + RL A AE R A GL F + Q + SGG R+ALA
Sbjct: 411 TIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALA 470
Query: 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVIISHS 288
RA LLLLDEPT HLD + + E L+ R +++++H
Sbjct: 471 RAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHR 516
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 87.2 bits (217), Expect = 2e-19
Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 33/227 (14%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPS 454
+I ++NVS Y G ++L+ +A+VGP+G+GKSTLLNL+ G P+
Sbjct: 1 MIELKNVSKIYGLGG--EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT 58
Query: 455 VGMVR--------KNSHLRFA--RYH-----QHLHELLDLDIS-----PLDYMLQSFPEV 494
G V + R Q+ + L DL + PL +S
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 495 KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
K E ++ GL R +LS GQ+ RV A P ++L DEPT +LD +
Sbjct: 119 KRAAEE--LLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176
Query: 555 T----IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTK 597
T ++ L + + +++V+HD L A+ + ++GK+ +
Sbjct: 177 TAKEVLELLRELNKERGKTIIMVTHDPELAKY-ADRVIELKDGKIEE 222
Score = 75.2 bits (186), Expect = 2e-15
Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 31/220 (14%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
E L+D LE+ G ++G +GSGKSTLL +LG + P + I +++ +
Sbjct: 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLING--KDLTKLSEKE 76
Query: 161 LTCVMEVDEERVRLEKLA--EQ---LVACEDDES-QEQLMDIYDRLDDISADTAEARAAN 214
L ++R +K+ Q L+ D + E + + + SA + A
Sbjct: 77 LA--------KLRRKKIGFVFQNFNLL---PDLTVLENVE-LPLLIAGKSAGRRKRAAEE 124
Query: 215 ILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDA 267
+L LG + +KK + SGG + R+A+ARAL P ++L DEPT +LD L+
Sbjct: 125 LLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL 184
Query: 268 CVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKL 307
L E K + +++++H + L +I L K+
Sbjct: 185 ---LRELNKERGKTIIMVTHDPE-LAKYADRVIELKDGKI 220
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 86.9 bits (216), Expect = 4e-19
Identities = 66/234 (28%), Positives = 100/234 (42%), Gaps = 40/234 (17%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
P++ V+ +S R+ G ++ + + L+GPNGAGK+TL NLI G PS
Sbjct: 1 TTPLLEVRGLSKRF--GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS 58
Query: 456 GMVR------------KNSHLRFARYHQHLHELLDLDISPLD-------------YMLQS 490
G V + + L AR Q L + L+ +L
Sbjct: 59 GTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGL--TVLENVAVGAHARLGLSGLLGR 116
Query: 491 FPEVKDREEMRK----IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLD 545
K+ E R+ ++ GL P LS GQ+ R+ A LA Q P LLLLD
Sbjct: 117 PRARKEEREARERARELLEFVGLGELADR-PAGNLSYGQQRRLEIARALATQ-PKLLLLD 174
Query: 546 EPT---NHLDMETIDALADAINDFEG-GLVLVSHDFRLINQVAEEIWICENGKV 595
EP N + E + L + D G ++L+ HD +L+ +A+ I + G+V
Sbjct: 175 EPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV 228
Score = 62.6 bits (153), Expect = 6e-11
Identities = 57/241 (23%), Positives = 94/241 (39%), Gaps = 48/241 (19%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP--------- 139
++ S F G + D LE+ G GL+G NG+GK+TL ++ P
Sbjct: 6 EVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRG 65
Query: 140 -----VPDH-------IDIFHLTREMPASDKSALTCVMEVDEERVRLEK-LAEQLVACED 186
+P H F +TR + L V R+ L L E+
Sbjct: 66 RDITGLPPHRIARLGIARTFQITR--LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEE 123
Query: 187 DESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246
E++E+ ++ + + + A+ A N+ S G + R+ +ARA
Sbjct: 124 REARERARELLEFVG--LGELADRPAGNL------------------SYGQQRRLEIARA 163
Query: 247 LYVKPHLLLLDEPT---NHLDLDACVWLEEEL-KTYKRILVIISHSQDFLNGVCTNIIHL 302
L +P LLLLDEP N + + L EL +++I H + G+ I+ L
Sbjct: 164 LATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVL 223
Query: 303 D 303
+
Sbjct: 224 N 224
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 90.4 bits (225), Expect = 6e-19
Identities = 67/223 (30%), Positives = 99/223 (44%), Gaps = 30/223 (13%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
PP I ++N+SFRY D P + +L I ALVG +GAGKSTLLNL+ G L P+
Sbjct: 317 PPIEISLENLSFRYPDGKPAL-SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ 375
Query: 456 GMVRKN-------------SHLRFARYHQHLHE--------LLDLDISPLDYMLQSFPEV 494
G +R N + + + +L L D S + ++ + +
Sbjct: 376 GEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDAS-DEEIIAALDQA 434
Query: 495 KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
E + K G + G LS GQ R+ A LLLLDEPT HLD E
Sbjct: 435 GLLEFVPKPDGLDTVIGEGG----AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE 490
Query: 555 TIDALADAIND-FEGGLVL-VSHDFRLINQVAEEIWICENGKV 595
T + A+ + + VL ++H A+ I + +NG++
Sbjct: 491 TEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRL 532
Score = 70.8 bits (174), Expect = 9e-13
Identities = 58/241 (24%), Positives = 97/241 (40%), Gaps = 48/241 (19%)
Query: 87 DVKIANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHID 145
++ + N S + G L D L + G+ L+G +G+GKSTLL +L P I
Sbjct: 320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIR 379
Query: 146 IFHLTREMPASDKSALTCVMEVDE----------ERVRLEKLA---EQLVACEDDESQEQ 192
+ + S ++ + V + E + L + E+++A D +
Sbjct: 380 VNGIDLR-DLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLE 438
Query: 193 LMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH 252
+ D LD + + A + SGG R+ALARAL
Sbjct: 439 FVPKPDGLDTVIGE----GGAGL------------------SGGQAQRLALARALLSPAS 476
Query: 253 LLLLDEPTNHLDLDACVWLEEELKTY------KRILVIISHSQDFLNGVCTNIIHLDKRK 306
LLLLDEPT HLD + E+ + ++ +++I+H + I+ LD +
Sbjct: 477 LLLLDEPTAHLDAET----EQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGR 531
Query: 307 L 307
L
Sbjct: 532 L 532
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 84.5 bits (210), Expect = 1e-18
Identities = 71/223 (31%), Positives = 107/223 (47%), Gaps = 32/223 (14%)
Query: 400 IMVQNVSFRYSDDGP--WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
I ++N+S Y G + + I+ +A+VGP+G+GKSTLLN++ G P+ G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 458 VRKN----SHL------RFARYH-----QHLHELLDLDIS-----PLDYMLQSFPEVKDR 497
VR + S L F R H Q + L DL PL +L P+ + R
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPL--LLAGVPKKERR 118
Query: 498 EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET-- 555
E +++ R GL R P +LS GQ+ RV A P ++L DEPT +LD ET
Sbjct: 119 ERAEELLERVGLGDRLNHYP-SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177
Query: 556 --IDALADAINDFEG-GLVLVSHDFRLINQVAEEIWICENGKV 595
++ L + +N G +V+V+HD L I + +GK+
Sbjct: 178 EVMELLRE-LNKEAGTTIVVVTHDPELAEYADRIIEL-RDGKI 218
Score = 59.4 bits (145), Expect = 5e-10
Identities = 52/225 (23%), Positives = 86/225 (38%), Gaps = 42/225 (18%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
+ L+ L + G ++G +GSGKSTLL +LG + P ++ ++ +
Sbjct: 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDISKLSEKE 75
Query: 161 LTCVMEVDEERVRLEKL--------------AEQLVACEDDESQEQLMDIYDRLDDISAD 206
L R + A + V + L +
Sbjct: 76 LA--------AFRRRHIGFVFQSFNLLPDLTALENVE------------LPLLLAGVPKK 115
Query: 207 TAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266
RA +L +G + + SGG + R+A+ARAL P ++L DEPT +LD +
Sbjct: 116 ERRERAEELLERVGLGDRLN-HYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSE 174
Query: 267 AC--VW--LEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKL 307
V L E K +V+++H + L II L K+
Sbjct: 175 TGKEVMELLRELNKEAGTTIVVVTHDPE-LAEYADRIIELRDGKI 218
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 85.2 bits (211), Expect = 2e-18
Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 17/227 (7%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
++D E G GLLG NG+GK+TLL ++ +P + I +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVD------------ 65
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT 222
V + R ++ L + + + + + RL+ +S +AR A + L
Sbjct: 66 TVRDPSFVRRKIGVLFGE-RGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQL- 123
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK--- 279
E ++ +FS G + ++A+ARAL P +L+LDEPT+ LD+ + +K K
Sbjct: 124 LEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183
Query: 280 RILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLE 326
R ++ SH + +C +I L K ++ G +T L LE
Sbjct: 184 RAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLE 230
Score = 61.7 bits (150), Expect = 1e-10
Identities = 61/249 (24%), Positives = 100/249 (40%), Gaps = 53/249 (21%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG-- 456
++ V +++ Y + R++ F + L+G NGAGK+TLL +I L P G
Sbjct: 1 MLEVTDLTKSYGSKVQAV-RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 457 ------MVRKNSHLR------------FAR--------YHQHLHELLDLDISPLDYMLQS 490
VR S +R +AR Y L+ L +I
Sbjct: 60 TIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIK------AR 113
Query: 491 FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550
E+ R ++ + + R + + S G K +V A P +L+LDEPT+
Sbjct: 114 IAELSKRLQLLEYLDRR----------VGEFSTGMKQKVAIARALVHDPSILVLDEPTSG 163
Query: 551 LDMETIDALADAINDF--EGGLVLVS-HDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607
LD+ T D I EG V+ S H + + + + + + G+V EG+I E
Sbjct: 164 LDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV-LEGSI----E 218
Query: 608 TLRAKVLKE 616
L A+ +
Sbjct: 219 ALDARTVLR 227
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 84.4 bits (210), Expect = 2e-18
Identities = 54/205 (26%), Positives = 83/205 (40%), Gaps = 33/205 (16%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR--------KNSHLR----F 466
+ R L+GPNGAGK+TL NLI G L P+ G V H
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77
Query: 467 ARYHQHLHELLDLDI---------SPLDYMLQSFPEVKDREEMRK----IIGRYGLTGRQ 513
R Q +L + + L ++ E R+ ++ R GL
Sbjct: 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA 137
Query: 514 QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT---NHLDMETIDALADAINDFEGGL 570
P +LS GQ+ R+ A P LLLLDEP N + E + L + + +
Sbjct: 138 DR-PAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITV 196
Query: 571 VLVSHDFRLINQVAEEIWICENGKV 595
+LV HD ++ +A+ + + + G+V
Sbjct: 197 LLVEHDMDVVMSLADRVTVLDQGRV 221
Score = 55.9 bits (136), Expect = 1e-08
Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 51/241 (21%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPDH 143
++ + F G L D + G +GL+G NG+GK+TL ++ P + D
Sbjct: 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG 61
Query: 144 IDI----------------FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDD 187
DI F + R P + L VM V + L E+
Sbjct: 62 EDITGLPPHEIARLGIGRTFQIPRLFPEL--TVLENVM-VAAQARTGSGLLLARARREER 118
Query: 188 ESQEQLMDIYDR--LDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245
E++E+ ++ +R L D+ A+ A + +G QQ+ R+ +AR
Sbjct: 119 EARERAEELLERVGLADL----ADRPAGELSYG-------QQR-----------RLEIAR 156
Query: 246 ALYVKPHLLLLDEPT---NHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHL 302
AL P LLLLDEP N + + L EL+ ++++ H D + + + L
Sbjct: 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVL 216
Query: 303 D 303
D
Sbjct: 217 D 217
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 83.1 bits (206), Expect = 4e-18
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 13/171 (7%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-KNSHLRFAR--YHQH 472
++ +L F ++ L + GPNGAGK+TLL ++ G L P G V + ++ R YHQ
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76
Query: 473 LHEL-----LDLDISPLDYM--LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQ 525
L L + +++ L+ + Q F + + + + + GL G + + P+ QLS GQ
Sbjct: 77 LLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDL-PVGQLSAGQ 135
Query: 526 KCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVS 574
+ RV A L L +LDEP LD E + L + +GG+VL++
Sbjct: 136 QRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLT 186
Score = 36.5 bits (85), Expect = 0.020
Identities = 41/187 (21%), Positives = 56/187 (29%), Gaps = 58/187 (31%)
Query: 92 NFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI----F 147
+ S T + E LQ T G NG+GK+TLL +L P +
Sbjct: 20 DLSFTLNAGEALQIT-------------GPNGAGKTTLLRILAGLLRPDAGEVYWQGEPI 66
Query: 148 HLTREMPASD----------KSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIY 197
RE K+ LT E + +
Sbjct: 67 QNVRESYHQALLYLGHQPGIKTELTA-----LENLHF------------------WQRFH 103
Query: 198 DRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
+ + A A+ L GL S G + R+ALAR L +LD
Sbjct: 104 GSGNAATIWEALAQVG--LAGLE------DLPVGQLSAGQQRRVALARLWLSPAPLWILD 155
Query: 258 EPTNHLD 264
EP LD
Sbjct: 156 EPFTALD 162
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 84.3 bits (209), Expect = 4e-18
Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 39/221 (17%)
Query: 395 IPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS 454
I P+I ++NVS R +G I +L + ++ A+VGPNGAGK+TLL+L+ G+ PS
Sbjct: 27 INEPLIELKNVSVRR--NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS 84
Query: 455 VGMVRKNSHLRFAR------YHQH-------LHELLDLDISPLDYMLQSF---------- 491
G V RF + + LHE + + D +L F
Sbjct: 85 SGDVTLLGR-RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQED 143
Query: 492 PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551
+D + ++ G P LS G++ RV+ A + P LL+LDEP L
Sbjct: 144 LTAEDLAAAQWLLELLGAKHLADR-PFGSLSQGEQRRVLIARALVKDPELLILDEPAQGL 202
Query: 552 DMETIDALADAINDFEGG-----LVLVSHDFRLINQVAEEI 587
D+ + L + + + L+ V+H AEEI
Sbjct: 203 DLIAREQLLNRLEELAASPGAPALLFVTH-------HAEEI 236
Score = 65.4 bits (160), Expect = 8e-12
Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 18/229 (7%)
Query: 92 NFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF---H 148
N S+ +G ++L D ++N G + ++G NG+GK+TLL++L P + +
Sbjct: 36 NVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRF 95
Query: 149 LTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTA 208
E + + V ER R+ + +V S + + L D A
Sbjct: 96 GKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFAS---IGIYQEDLTA--EDLA 150
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA- 267
A+ L G K + + S G + R+ +ARAL P LL+LDEP LDL A
Sbjct: 151 AAQWLLELLGA---KHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAR 207
Query: 268 --CVWLEEEL---KTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
+ EEL +L + H+++ T+ + L + ++ G
Sbjct: 208 EQLLNRLEELAASPGAPALLFVTHHAEEIPPCF-THRLLLKEGEVVAQG 255
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 83.9 bits (208), Expect = 5e-18
Identities = 62/232 (26%), Positives = 96/232 (41%), Gaps = 27/232 (11%)
Query: 88 VKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143
+ + N SI + G L + LE+ G G++G +GSGKSTL +L E P
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 144 IDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDD- 202
I + P A + Q+V + S + L +
Sbjct: 64 I-LLDGKPLAPKKRAKAFYRPV--------------QMVFQDPYSSLNPRRTVGRILSEP 108
Query: 203 ---ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEP 259
++ R A +L +G ++ + SGG R RIA+ARAL +P LL+LDEP
Sbjct: 109 LRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEP 168
Query: 260 TNHLD--LDACVW--LEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKL 307
T+ LD + A + L E K + ISH + +C I +D ++
Sbjct: 169 TSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQI 220
Score = 81.2 bits (201), Expect = 3e-17
Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 398 PVIMVQNVSFRYSDDGPW--IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
++ V+N+S Y N+ I+ L +VG +G+GKSTL L+ G PS
Sbjct: 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 456 GMVR-----KNSHLRF-ARYH------QH----LHELLDLDISPLDYMLQSFPEVKDREE 499
G + R A Y Q L+ + L L+ K ++
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRI-LSEPLRPHGLSKSQQR 120
Query: 500 MRKIIGRYGLTGRQQVCPIR--QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM---- 553
+ +++ + GL R +LS GQ+ R+ A P LL+LDEPT+ LD+
Sbjct: 121 IAELLDQVGL--PPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQA 178
Query: 554 ETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVT 596
+ ++ L + + + +SHD L+ + + I + +NG++
Sbjct: 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIV 221
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 82.7 bits (205), Expect = 5e-18
Identities = 70/217 (32%), Positives = 101/217 (46%), Gaps = 26/217 (11%)
Query: 401 MVQ--NVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
M++ NVS Y G ++ I L L GP+GAGK+TLL L+YG LTPS G V
Sbjct: 1 MIEFHNVSKAYPG-GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 459 RKNSHLRFARYHQHLHELLDLDISPL--DYMLQS---------FP-EV--KDREEMRKII 504
R R LL I + D+ L P EV K E+++ +
Sbjct: 60 RIAGED-VNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRV 118
Query: 505 GR----YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET---ID 557
G GL + P QLS G++ RV A +P LLL DEPT +LD + I
Sbjct: 119 GAALRQVGLEHKADAFPE-QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL 177
Query: 558 ALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGK 594
L +N +++ +HD L+++VA + I ++G+
Sbjct: 178 DLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
Score = 57.6 bits (140), Expect = 2e-09
Identities = 49/213 (23%), Positives = 81/213 (38%), Gaps = 21/213 (9%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF-HLTREMPASD 157
G L D L + G L G +G+GK+TLL +L P + I +
Sbjct: 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQ 73
Query: 158 KSALTCVMEV--DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANI 215
L + V + R+ ++ + VA + + + R
Sbjct: 74 LPLLRRRIGVVFQDFRLLPDRTVYENVA------------LPLEVRGKKEREIQRRVGAA 121
Query: 216 LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVW----L 271
L +G + + SGG + R+A+ARA+ P LLL DEPT +LD L
Sbjct: 122 LRQVGLEHKADAFPEQ-LSGGEQQRVAIARAIVNSPPLLLADEPTGNLD-PDLSERILDL 179
Query: 272 EEELKTYKRILVIISHSQDFLNGVCTNIIHLDK 304
+ L +++ +H ++ V +I LD
Sbjct: 180 LKRLNKRGTTVIVATHDLSLVDRVAHRVIILDD 212
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 83.0 bits (206), Expect = 5e-18
Identities = 61/241 (25%), Positives = 95/241 (39%), Gaps = 72/241 (29%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI------------ 447
+ +NV+FRY DGP + R++ I +ALVGP+G+GKSTL+NLI
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 448 ----------YGDLTPSVGMVRKNSHL---------------------RFARYHQHLHEL 476
L +G+V ++ L A + HE
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 477 LDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536
+ PE D +IG G+ +LS GQ+ R+ A
Sbjct: 121 IM-----------ELPEGYD-----TVIGERGV----------KLSGGQRQRIAIARALL 154
Query: 537 QAPHLLLLDEPTNHLDMETIDALADAINDF-EGGLVLV-SHDFRLINQVAEEIWICENGK 594
+ P +L+LDE T+ LD E+ + A+ + V +H I A+ I + E+GK
Sbjct: 155 KDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGK 213
Query: 595 V 595
+
Sbjct: 214 I 214
Score = 52.2 bits (126), Expect = 2e-07
Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 41/188 (21%)
Query: 93 FSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL--------GNREVPVPDHI 144
F G +L+D L++ G L+G +GSGKSTL+ ++ G + D
Sbjct: 8 FRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILI---DGH 64
Query: 145 DIFHLTREMPASDKSALTCVMEVDEERVRL--EKLAEQLVACEDDESQEQLMDIYDRLDD 202
D+ R+ + ++ D V L + +AE + ++E++ +
Sbjct: 65 DV----RDYTLASLRRQIGLVSQD---VFLFNDTVAENIAYGRPGATREEVEEA------ 111
Query: 203 ISADTAEARAANILHGL------GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLL 256
ARAAN H G+ + ++ K SGG R RIA+ARAL P +L+L
Sbjct: 112 -------ARAAN-AHEFIMELPEGYDTVIGERGVK-LSGGQRQRIAIARALLKDPPILIL 162
Query: 257 DEPTNHLD 264
DE T+ LD
Sbjct: 163 DEATSALD 170
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 84.7 bits (210), Expect = 7e-18
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 19/194 (9%)
Query: 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHEL-- 476
++ F I + +G NGAGKST L ++ G L P+ G VR N F R ++L +
Sbjct: 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGL 101
Query: 477 -------LDLDISPLDYM-----LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDG 524
L D+ LD + + P+ + E + + L G + P+R+LS G
Sbjct: 102 VMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW-PVRKLSLG 160
Query: 525 QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLI 580
Q+ R A P +L LDEPT LD+ + + + ++ + ++L +H F I
Sbjct: 161 QRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDI 220
Query: 581 NQVAEEIWICENGK 594
+ + + + + G+
Sbjct: 221 ATLCDRVLLIDQGQ 234
Score = 72.4 bits (178), Expect = 9e-14
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 27/217 (12%)
Query: 104 QDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA--- 160
QD E+ G G LG NG+GKST L +L +P + + P +
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGK---DPFRRREEYLR 97
Query: 161 -LTCVMEVDEERVRLE-KLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHG 218
+ VM +++L L +S E L IY+ I D R +
Sbjct: 98 SIGLVMGQ---KLQLWWDLPAL-------DSLEVLKLIYE----IPDDEFAERLDFLTEI 143
Query: 219 LGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACV----WLEEE 274
L ++ K S G RMR LA AL P +L LDEPT LD++A +L+E
Sbjct: 144 LDLEGFLKWPVRK-LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202
Query: 275 LKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
+ + +++ +H D + +C ++ +D+ +L + G
Sbjct: 203 NEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDG 239
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 79.9 bits (198), Expect = 2e-17
Identities = 57/228 (25%), Positives = 87/228 (38%), Gaps = 65/228 (28%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI--- 144
+++ N S + +L D L + G LLG +GSGKSTLL + E P I
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 145 --DIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQL---MDIYDR 199
D+ L E+P + + V + L + + +
Sbjct: 61 GEDLTDLEDELPPLRRR-IGMVFQ-----------------------DFALFPHLTVLE- 95
Query: 200 LDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEP 259
NI GL SGG + R+ALARAL + P +LLLDEP
Sbjct: 96 --------------NIALGL--------------SGGQQQRVALARALAMDPDVLLLDEP 127
Query: 260 TNHLDLDACVWLEEELKTYKRIL----VIISHSQDFLNGVCTNIIHLD 303
T+ LD + LK+ + L V+++H D + ++ L
Sbjct: 128 TSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLR 175
Score = 73.8 bits (182), Expect = 3e-15
Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 43/208 (20%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+ ++NVS RY + ++ I+ +AL+GP+G+GKSTLL I G P G +
Sbjct: 1 LELKNVSKRYG--QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI- 57
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG----RYGL----TG 511
+ D++ L+ + +R+ IG + L T
Sbjct: 58 ---------------LIDGEDLTDLE---------DELPPLRRRIGMVFQDFALFPHLTV 93
Query: 512 RQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMET---IDALADAINDFE 567
+ + LS GQ+ RV A LA P +LLLDEPT+ LD T + AL ++
Sbjct: 94 LENI--ALGLSGGQQQRVALARALAMD-PDVLLLDEPTSALDPITRREVRALLKSLQAQL 150
Query: 568 G-GLVLVSHDFRLINQVAEEIWICENGK 594
G +VLV+HD ++A+ + + +GK
Sbjct: 151 GITVVLVTHDLDEAARLADRVVVLRDGK 178
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 79.3 bits (196), Expect = 3e-17
Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 26/199 (13%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+ + NVSF Y + + +NL + ++AL+G +G+GKSTLL L+ GDL P G +
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
+ + +L +S L +L P + D +R +G R
Sbjct: 61 LDGV--------PVSDLEKA-LSSLISVLNQRPYLFD-TTLRNNLG-------------R 97
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDF 577
+ S G++ R+ A + Q ++LLDEPT LD T L I + + L+ ++H
Sbjct: 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHL 157
Query: 578 RLINQVAEEIWICENGKVT 596
I + ++I ENGK+
Sbjct: 158 TGIEHM-DKILFLENGKII 175
Score = 50.8 bits (122), Expect = 3e-07
Identities = 46/162 (28%), Positives = 64/162 (39%), Gaps = 49/162 (30%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L++ LEL G + LLG +GSGKSTLL +L P +I L + + AL+
Sbjct: 18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLL--TGDLKPQQGEIT-LDGVPVSDLEKALS 74
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT 222
++ V +R L + + LG
Sbjct: 75 SLISVLNQRPYL------------------------------------FDTTLRNNLG-- 96
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+ FSGG R R+ALAR L ++LLDEPT LD
Sbjct: 97 --------RRFSGGERQRLALARILLQDAPIVLLDEPTVGLD 130
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 80.5 bits (199), Expect = 4e-17
Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 30/220 (13%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I NV+ Y + + + I + LVGP+GAGKSTLL LIY + P+ G +R
Sbjct: 1 IEFINVTKTYPNGTAALD-GINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 460 KN----SHLR-----FARYH-----QHLHELLDLDISPLDYMLQSFP----EVKDREEMR 501
N S LR + R Q L D ++ Y +F V RE +
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNV----YENVAFALEVTGVPPREIRK 115
Query: 502 KI---IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA 558
++ + GL+ + + P +LS G++ RV A +P +L+ DEPT +LD +T
Sbjct: 116 RVPAALELVGLSHKHRALP-AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE 174
Query: 559 LADAINDFE--GGLVLVS-HDFRLINQVAEEIWICENGKV 595
+ + + G V+V+ H L++ + E GK+
Sbjct: 175 IMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
Score = 42.8 bits (101), Expect = 2e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266
SGG + R+A+ARA+ P +L+ DEPT +LD D
Sbjct: 138 SGGEQQRVAIARAIVNSPTILIADEPTGNLDPD 170
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 81.2 bits (201), Expect = 4e-17
Identities = 73/243 (30%), Positives = 100/243 (41%), Gaps = 70/243 (28%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSV 455
I +N+S YS G R L G+ LD R LA++GPNGAGKSTLL + G+L+P
Sbjct: 2 IRAENLS--YSLAG----RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS 55
Query: 456 GMVRKNSHLRFARYHQHLHELLDLDISP-------LDYMLQ----SFP----EV------ 494
G V N L+ P + Q +FP EV
Sbjct: 56 GEVTLNGV--------------PLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI 101
Query: 495 -----KDREEMRKIIGRY-------GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ----- 537
++ EE +I + GL GR R LS G++ RV A + Q
Sbjct: 102 PHRSGREPEEDERIAAQALAATDLSGLAGRD----YRTLSGGEQQRVQLARVLAQLWPPV 157
Query: 538 -APHLLLLDEPTNHLDM---ETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENG 593
+ L LDEPT+ LD+ LA + G ++ V HD L Q A+ I + G
Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQG 217
Query: 594 KVT 596
+V
Sbjct: 218 RVI 220
Score = 57.8 bits (140), Expect = 3e-09
Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 37/194 (19%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++ N S + G LL L+L G +LG NG+GKSTLL L P + +
Sbjct: 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLN 61
Query: 148 -HLTREMPASDKSALTCVMEVD---------EERVRLEKLAEQLVACEDDESQEQLMDIY 197
P + + V+ + +E V++ ++ + + E E++
Sbjct: 62 GVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGR--EPEEDERI---- 115
Query: 198 DRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL------YVKP 251
A+A AA L GL + + SGG + R+ LAR L
Sbjct: 116 ---------AAQALAATDLSGL------AGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160
Query: 252 HLLLLDEPTNHLDL 265
L LDEPT+ LD+
Sbjct: 161 RWLFLDEPTSALDI 174
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 81.1 bits (201), Expect = 4e-17
Identities = 61/201 (30%), Positives = 85/201 (42%), Gaps = 28/201 (13%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLT 452
++ ++ VS + LE I+L +A++GP+G GKSTLL LI G
Sbjct: 1 MALLEIEGVSKSFGG-----VEVLE-DINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK 54
Query: 453 PSVGMVR------KNSHLRFARYHQHLHELLD----LDISPLDYMLQSFPEVKDREEMRK 502
P+ G V Q LL LD L L+ + + RE ++
Sbjct: 55 PTSGEVLLDGRPVTGPGPDIGYVFQE-DALLPWLTVLDNVALGLELRGKSKAEARERAKE 113
Query: 503 IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLD----METID 557
++ GL G + P QLS G + RV A LA P LLLLDEP LD E D
Sbjct: 114 LLELVGLAGFEDKYP-HQLSGGMRQRVAIARALA-TRPKLLLLDEPFGALDALTREELQD 171
Query: 558 ALADAINDFEGGLVLVSHDFR 578
L + ++LV+HD
Sbjct: 172 ELLRLWEETRKTVLLVTHDVD 192
Score = 62.6 bits (153), Expect = 6e-11
Identities = 61/223 (27%), Positives = 90/223 (40%), Gaps = 58/223 (26%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL-------------G 134
++I S +F G E+L+D L + G +LG +G GKSTLL ++
Sbjct: 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLD 63
Query: 135 NREV--PVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQ 192
R V P PD +F +P + L V L +L E++E
Sbjct: 64 GRPVTGPGPDIGYVFQEDALLPW--LTVLDNVA-----------LGLELRGKSKAEARE- 109
Query: 193 LMDIYDRLDDISADTAEARAANILH--GL-GFTKEMQQKKTKDFSGGWRMRIALARALYV 249
RA +L GL GF K SGG R R+A+ARAL
Sbjct: 110 ------------------RAKELLELVGLAGFED----KYPHQLSGGMRQRVAIARALAT 147
Query: 250 KPHLLLLDEPTNHLD----LDACVWLEEELKTYKRILVIISHS 288
+P LLLLDEP LD + L + ++ +++++H
Sbjct: 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 83.5 bits (207), Expect = 1e-16
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 23/226 (10%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
+ ++NVSF Y +N + ++A++G +G+GKSTLL L+ G P
Sbjct: 333 TGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ 392
Query: 456 GMVRKN----SHLRFARYHQHLHELLD----LDISPLDYMLQSFPEVKDREEMRKIIGRY 507
G + N + L + + L + D + + P+ D EE+ + +
Sbjct: 393 GSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASD-EELWAALQQV 451
Query: 508 GLTGRQQVCPI----------RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETID 557
GL + P R+LS G++ R+ A L LLDEPT LD T
Sbjct: 452 GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511
Query: 558 ALADAI-NDFEG-GLVLVSHDFRLINQVAEEIWICENGKVTKWEGN 601
+ + EG L++V+H R + + + I + +NGK EG
Sbjct: 512 QVLALLFEHAEGKTLLMVTHRLRGLER-MDRIIVLDNGK-IIEEGT 555
Score = 71.2 bits (175), Expect = 7e-13
Identities = 74/271 (27%), Positives = 109/271 (40%), Gaps = 49/271 (18%)
Query: 83 PKSRDVKIANFSITFHGCEL--LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV 140
+ +++ N S T+ G + L++ L L G + +LG +GSGKSTLL +L P
Sbjct: 332 TTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391
Query: 141 PDHI-----DIFHLTREMPASDKSALTCVMEVDEERVRL--EKLAEQLVACEDDESQEQL 193
I +I L V+ +RV L L + L D S E+L
Sbjct: 392 QGSITLNGVEIASL----DEQALRETISVLT---QRVHLFSGTLRDNLRLANPDASDEEL 444
Query: 194 MDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHL 253
++ E+ + LG E ++ SGG R R+ALARAL L
Sbjct: 445 WAALQQVG--LEKLLESAPDGLNTWLG---EGGRR----LSGGERRRLALARALLHDAPL 495
Query: 254 LLLDEPTNHLD----LDACVWLEEELKTYKRILVIISHSQDFLNGV--CTNIIHLDKRKL 307
LLDEPT LD L E + + L++++H L G+ II LD K+
Sbjct: 496 WLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHR---LRGLERMDRIIVLDNGKI 550
Query: 308 KYYGGNYEAFCKTRLELLENQ-----MKQYN 333
G + ELL N + Q +
Sbjct: 551 IEE-GTHA-------ELLANNGRYKRLYQLD 573
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 78.5 bits (194), Expect = 1e-16
Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 17/208 (8%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-- 459
++N+SF Y G I +L + +AL G NGAGK+TL ++ G + S G +
Sbjct: 2 IENISFSYKK-GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 460 -KNSHLRFARYH------QHLHELLDLDISPLDYMLQSFPEV-KDREEMRKIIGRYGLTG 511
K + R Q + L D S + +L E+ E+ ++ L
Sbjct: 61 GKPIKAK-ERRKSIGYVMQDVDYQLFTD-SVREELLLGLKELDAGNEQAETVLKDLDLYA 118
Query: 512 RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGG 569
++ P LS GQK R+ A LL+ DEPT+ LD + ++ + + I + +G
Sbjct: 119 LKERHP-LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGK 177
Query: 570 LVLV-SHDFRLINQVAEEIWICENGKVT 596
V+V +HD+ + +V + + + NG +
Sbjct: 178 AVIVITHDYEFLAKVCDRVLLLANGAIV 205
Score = 66.5 bits (163), Expect = 2e-12
Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 33/228 (14%)
Query: 90 IANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148
I N S ++ G E+L D L+L G L G NG+GK+TL +L I + +
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI-LLN 60
Query: 149 LTREMPASDKSALTCVM-EVD----EERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI 203
+ ++ VM +VD + VR E + L ++
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVREE--------------------LLLGLKEL 100
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
A +A +L L ++++ SGG + R+A+A AL LL+ DEPT+ L
Sbjct: 101 DAG--NEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157
Query: 264 DLDACVWLEE---ELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLK 308
D + E EL + +++I+H +FL VC ++ L +
Sbjct: 158 DYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 75.8 bits (187), Expect = 1e-16
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 205 ADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTN 261
A+ARA L +G + ++ SGG + R+A+ARAL KP LLLLDEPT
Sbjct: 63 DKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
Score = 74.7 bits (184), Expect = 3e-16
Identities = 36/121 (29%), Positives = 47/121 (38%), Gaps = 14/121 (11%)
Query: 441 STLLNLIYGDLTPSVG------------MVRKNSHLRFARYHQHLHELLDLDISPLDYML 488
STLL LI G L P+ G RK R Q +L + + +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTV--RENLF 58
Query: 489 QSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
+ + + + R GL P+ LS GQK RV A + P LLLLDEPT
Sbjct: 59 FGLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPT 118
Query: 549 N 549
Sbjct: 119 A 119
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 78.3 bits (194), Expect = 2e-16
Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 41/221 (18%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS------- 454
++ +S Y +L ++ LAL+GP+G GK+TLL LI G P
Sbjct: 3 LKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 455 -------------VGMVRKNSHLRFARY-HQHLHELLDLDISPLDYMLQSFPEVKDR-EE 499
+GMV ++ +A + H + E + L E++ R E
Sbjct: 61 GRDVTGVPPERRNIGMVFQD----YALFPHLTVAENIAF---GLKLRGVPKAEIRARVRE 113
Query: 500 MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLD----ME 554
+ +++G GL R +LS GQ+ RV A LA + P LLLLDEP + LD E
Sbjct: 114 LLELVGLEGLLNR----YPHELSGGQQQRVALARALARE-PSLLLLDEPLSALDAKLREE 168
Query: 555 TIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
+ L + + + V+HD +A+ I + G++
Sbjct: 169 LREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
Score = 59.1 bits (144), Expect = 7e-10
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 199 RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDE 258
+L + AR +L +G + + + SGG + R+ALARAL +P LLLLDE
Sbjct: 98 KLRGVPKAEIRARVRELLELVGLEGLLN-RYPHELSGGQQQRVALARALAREPSLLLLDE 156
Query: 259 PTNHLDLDACVWLEEELKTYKR----ILVIISHSQD 290
P + LD L EELK +R + ++H Q+
Sbjct: 157 PLSALDAKLREELREELKELQRELGITTIYVTHDQE 192
Score = 40.2 bits (95), Expect = 0.001
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL 130
+++ S T+ L D L + G LLG +G GK+TLL
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLL 43
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 79.2 bits (195), Expect = 2e-16
Identities = 66/232 (28%), Positives = 108/232 (46%), Gaps = 25/232 (10%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI----FHLTR----E 152
E+L+ L+ N G ++G +GSGKST L + E P I + +L R +
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78
Query: 153 MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARA 212
+ +DK+ L + R RL + + E +M+ ++ +S A RA
Sbjct: 79 LKVADKNQLRLL------RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERA 132
Query: 213 ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD-------L 265
L +G + Q K SGG + R+++ARAL ++P +LL DEPT+ LD L
Sbjct: 133 VKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVL 192
Query: 266 DACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
L EE KT +V+++H F V +++I L + K++ G + F
Sbjct: 193 RIMQQLAEEGKT----MVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
Score = 50.7 bits (121), Expect = 6e-07
Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 35/199 (17%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVG----------MVR-KNSHLRFARYHQ------- 471
++++G +G+GKST L I PS G +VR K+ L+ A +Q
Sbjct: 34 ISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTR 93
Query: 472 ------------HLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
H+ L ++ +P+ + S E ++R K + + G+ R Q
Sbjct: 94 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAV--KYLAKVGIDERAQGKYPV 151
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGG-LVLVSHD 576
LS GQ+ RV A P +LL DEPT+ LD E + + + EG +V+V+H+
Sbjct: 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
Query: 577 FRLINQVAEEIWICENGKV 595
V+ + GK+
Sbjct: 212 MGFARHVSSHVIFLHQGKI 230
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 79.0 bits (195), Expect = 2e-16
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 24/178 (13%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDIS-PL--DY 486
L L+GPNGAGKSTL+ ++ G + P G++++N LR Q L+ LD + PL +
Sbjct: 33 LTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLY----LDTTLPLTVNR 88
Query: 487 MLQSFPEVKDREEMRKIIGRYGLTGRQQVC-----PIRQLSDGQKCRVVFAYLAWQAPHL 541
L+ P K + + + R Q P+++LS G+ RV+ A P L
Sbjct: 89 FLRLRPGTKKEDILPAL-------KRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQL 141
Query: 542 LLLDEPTNHLDMETIDALADAIN----DFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
L+LDEPT +D+ AL D I+ + + +++VSHD L+ +E+ +C N +
Sbjct: 142 LVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEV-LCLNHHI 198
Score = 42.0 bits (99), Expect = 4e-04
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWL 271
SGG R+ LARAL +P LL+LDEPT +D++ V L
Sbjct: 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVAL 159
Score = 39.3 bits (92), Expect = 0.003
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLG 134
V + N S++F +L D LEL G+ LLG NG+GKSTL+ VLG
Sbjct: 5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG 52
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 77.5 bits (192), Expect = 4e-16
Identities = 62/207 (29%), Positives = 86/207 (41%), Gaps = 46/207 (22%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSV 455
+ V+NVS Y G LE I L +ALVGP+G GKSTLL +I G P+
Sbjct: 1 LEVRNVSKTYGGGGGA-VTALE-DISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS 58
Query: 456 GMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQS---FP------------EVKD---- 496
G V + + Y+ Q P E++
Sbjct: 59 GEVL----VDGEPVTGPGPDRG--------YVFQQDALLPWLTVLDNVALGLELQGVPKA 106
Query: 497 --REEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDM 553
RE +++ GL+G + P QLS G + RV A LA P +LLLDEP + LD
Sbjct: 107 EARERAEELLELVGLSGFENAYP-HQLSGGMRQRVALARALA-VDPDVLLLDEPFSALDA 164
Query: 554 ET----IDALADAINDFEGGLVLVSHD 576
T + L D + ++LV+HD
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTHD 191
Score = 57.1 bits (139), Expect = 3e-09
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 199 RLDDISADTAEARAANILH--GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLL 256
L + A RA +L GL + SGG R R+ALARAL V P +LLL
Sbjct: 99 ELQGVPKAEARERAEELLELVGL---SGFENAYPHQLSGGMRQRVALARALAVDPDVLLL 155
Query: 257 DEPTNHLD 264
DEP + LD
Sbjct: 156 DEPFSALD 163
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 76.9 bits (190), Expect = 5e-16
Identities = 62/227 (27%), Positives = 96/227 (42%), Gaps = 22/227 (9%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+K + + T+ +L D L + G YG LG NG+GK+T + ++ P I
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFD 60
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
+ + + ++E L A E+ + + RL I
Sbjct: 61 GKSYQKNIEALRRIGALIEAPG-------FYPNLTAREN-------LRLLARLLGIR--- 103
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
+ R +L +G K+ +KK K FS G + R+ +A AL P LL+LDEPTN LD D
Sbjct: 104 -KKRIDEVLDVVGL-KDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161
Query: 268 CVWLEE---ELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
L E L+ ++I SH + V I ++K KL G
Sbjct: 162 IKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
Score = 65.7 bits (161), Expect = 3e-12
Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 27/188 (14%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQS 490
+GPNGAGK+T + +I G + P G + + + +Q E L + ++
Sbjct: 30 GFLGPNGAGKTTTMKIILGLIKPDSGEITFDG-----KSYQKNIEALRRIGALIEA--PG 82
Query: 491 F-PEVKDREEMR--------------KIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535
F P + RE +R +++ GL + ++ S G K R+ A
Sbjct: 83 FYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-KVKGFSLGMKQRLGIALAL 141
Query: 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLV-SHDFRLINQVAEEIWICEN 592
P LL+LDEPTN LD + I L + I +G VL+ SH I +VA+ I I
Sbjct: 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINK 201
Query: 593 GKVTKWEG 600
GK+ EG
Sbjct: 202 GKLI-EEG 208
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 75.5 bits (186), Expect = 8e-16
Identities = 65/195 (33%), Positives = 84/195 (43%), Gaps = 33/195 (16%)
Query: 412 DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV----------RKN 461
GP + + L F + LAL+G NGAGKSTLL + G L P G V RK
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62
Query: 462 SHLRFARYH----------QHLHELLDLDIS--PLDYMLQSFPEVKDR-EEMRKIIGRYG 508
L R Q +D D++ PL+ L S EV+ R E +G G
Sbjct: 63 --LLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGL-SEAEVERRVREALTAVGASG 119
Query: 509 LTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD---METIDALADAIND 565
L R P LS G+K RV A P +LLLDEPT LD E + A+ +
Sbjct: 120 LRER----PTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175
Query: 566 FEGGLVLVSHDFRLI 580
+V+ +HD L
Sbjct: 176 EGMTVVISTHDVDLA 190
Score = 54.4 bits (131), Expect = 2e-08
Identities = 58/204 (28%), Positives = 88/204 (43%), Gaps = 31/204 (15%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK 158
G E+L+ G LLG NG+GKSTLL L P + I E +
Sbjct: 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLI---DGEPLDYSR 60
Query: 159 SALTCVMEVDEERVR----LEKLAEQLVACEDDESQEQLMDIYDRLDDI--SADTAEARA 212
L E R R + +QL A + D+ D+ ++ S E R
Sbjct: 61 KGLL------ERRQRVGLVFQDPDDQLFAADVDQ------DVAFGPLNLGLSEAEVERRV 108
Query: 213 ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLE 272
L +G + ++++ T SGG + R+A+A A+ ++P +LLLDEPT LD E
Sbjct: 109 REALTAVGAS-GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAG---RE 164
Query: 273 EELKTYKRI------LVIISHSQD 290
+ L +R+ +VI +H D
Sbjct: 165 QMLAILRRLRAEGMTVVISTHDVD 188
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 76.7 bits (189), Expect = 9e-16
Identities = 59/188 (31%), Positives = 84/188 (44%), Gaps = 27/188 (14%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL----------R 465
I + +E + +A+VGP+G+GKSTLL ++ G PS G VR
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 466 FARYH-----QHLHELLDLD-----ISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV 515
H Q H + +L PL+ L+ R + ++ GL R
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLE--LRGESSADSRAGAKALLEAVGLGKRLTH 142
Query: 516 CPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALAD---AIN-DFEGGLV 571
P QLS G++ RV A P +L DEPT +LD T D +AD A+N + LV
Sbjct: 143 YP-AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201
Query: 572 LVSHDFRL 579
LV+HD +L
Sbjct: 202 LVTHDPQL 209
Score = 57.8 bits (140), Expect = 2e-09
Identities = 47/172 (27%), Positives = 70/172 (40%), Gaps = 27/172 (15%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
+L+ L + G ++G +GSGKSTLLAVL + P + + L
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLL----------GQPL 74
Query: 162 TCVMEVDEERVRLEK---------LAEQLVACEDDESQEQLMDIYDRLDDISADTAEARA 212
+ E +R L L A E+ +L S+ + A A
Sbjct: 75 HKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLEL-------RGESSADSRAGA 127
Query: 213 ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+L +G K + SGG + R+ALARA +P +L DEPT +LD
Sbjct: 128 KALLEAVGLGKRLTHYP-AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLD 178
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 75.9 bits (187), Expect = 9e-16
Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 14/176 (7%)
Query: 409 YSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS---HLR 465
S ++ L F ++ L + GPNG GK+TLL ++ G L P G VR N +
Sbjct: 8 CSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQ 67
Query: 466 FARYHQHLHELLDLD-----ISPLDYMLQSFPEVKDREEMR--KIIGRYGLTGRQQVCPI 518
H+++ L L +S L+ L + + + + GLTG + + P
Sbjct: 68 RDEPHRNILYLGHLPGLKPELSALEN-LHFWAAIHGGAQRTIEDALAAVGLTGFEDL-PA 125
Query: 519 RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVL 572
QLS GQ+ R+ A L L +LDEPT LD + LA + GG+VL
Sbjct: 126 AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVL 181
Score = 47.0 bits (112), Expect = 6e-06
Identities = 41/174 (23%), Positives = 53/174 (30%), Gaps = 46/174 (26%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI----FHLTREMPASD------ 157
LN G + G NG GK+TLL +L P + R+ P +
Sbjct: 21 FTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80
Query: 158 ----KSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAA 213
K L+ E L Q I D L + E A
Sbjct: 81 LPGLKPELS--------------ALENLHFWAAIHGGAQRT-IEDALAAVGLTGFEDLPA 125
Query: 214 NILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
L S G + R+ALAR + L +LDEPT LD
Sbjct: 126 AQL-----------------SAGQQRRLALARLWLSRAPLWILDEPTTALDKAG 162
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 76.6 bits (189), Expect = 1e-15
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 33/204 (16%)
Query: 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHEL- 476
+ + F I+ + +GPNGAGK+T L ++ G L P+ G VR + + R + L +
Sbjct: 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIG 97
Query: 477 --------LDLDISPLD--YMLQSFPEVKDRE---------EMRKIIGRYGLTGRQQVCP 517
L D+ +D Y+L + ++ E+ + P
Sbjct: 98 VVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDL-------EELLDTP 150
Query: 518 IRQLSDGQKCRV-VFAYLAWQAPHLLLLDEPTNHLDM---ETIDALADAIN-DFEGGLVL 572
+RQLS GQ+ R + A L + P +L LDEPT LD+ E I N + ++L
Sbjct: 151 VRQLSLGQRMRAEIAAALLHE-PEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLL 209
Query: 573 VSHDFRLINQVAEEIWICENGKVT 596
SH + I +A + + + G++
Sbjct: 210 TSHYMKDIEALARRVLVIDKGRLL 233
Score = 54.6 bits (132), Expect = 3e-08
Identities = 57/239 (23%), Positives = 90/239 (37%), Gaps = 37/239 (15%)
Query: 81 VHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV 140
K R+V E L+ + G G +G NG+GK+T L +L P
Sbjct: 27 FKRKYREV------------EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT 74
Query: 141 PDHIDIFHLTREMPASDKSAL----TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDI 196
+ + L +P + V + L L + S L I
Sbjct: 75 SGEVRVAGL---VPWKRRKKFLRRIGVVFGQKTQ------LWWDLPVID---SFYLLAAI 122
Query: 197 YDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLL 256
YD + + R + L + + + S G RMR +A AL +P +L L
Sbjct: 123 YD----LPPARFKKRLDELSELLDLEELLDTP-VRQLSLGQRMRAEIAAALLHEPEILFL 177
Query: 257 DEPTNHLDLDACVWLEEELKTYKR----ILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
DEPT LD+ A + LK Y R +++ SH + + ++ +DK +L Y G
Sbjct: 178 DEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 75.6 bits (186), Expect = 1e-15
Identities = 58/188 (30%), Positives = 87/188 (46%), Gaps = 14/188 (7%)
Query: 412 DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-KNSHLRFAR-- 468
DG ++ L F + L + GPNG+GK+TLL ++ G P G V L F R
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS 70
Query: 469 YHQHLHELLDLD-----ISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSD 523
+ L L +S L+ L+ + E++ + + R GL G + P+ QLS
Sbjct: 71 IARGLLYLGHAPGIKTTLSVLEN-LRFWHADHSDEQVEEALARVGLNGFEDR-PVAQLSA 128
Query: 524 GQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVS--HDFRL 579
GQ+ RV A L L +LDEPT LD + A+A+ GG+V+++ D L
Sbjct: 129 GQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGL 188
Query: 580 INQVAEEI 587
A E+
Sbjct: 189 SEAGAREL 196
Score = 41.3 bits (97), Expect = 5e-04
Identities = 43/171 (25%), Positives = 59/171 (34%), Gaps = 48/171 (28%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV---------PDHIDIFHLTREM----- 153
L G + G NGSGK+TLL +L P+ P + R +
Sbjct: 21 FTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80
Query: 154 PASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAA 213
K+ L+ + E L D S EQ + + L + + E R
Sbjct: 81 APGIKTTLSVL--------------ENLRFWHADHSDEQ---VEEALARVGLNGFEDRPV 123
Query: 214 NILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
L S G + R+ALAR L L +LDEPT LD
Sbjct: 124 AQL-----------------SAGQQRRVALARLLLSGRPLWILDEPTTALD 157
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 75.6 bits (186), Expect = 1e-15
Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 38/218 (17%)
Query: 411 DDGPWIYRNLEFGIDLD----TRLALVGPNGAGKSTLLNLIYGDLTPS------------ 454
D + Y DL A+VGP+G+GKSTLLNLI G TP
Sbjct: 4 DKIRFSYGEQPMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVT 63
Query: 455 --------VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGR 506
V M+ + ++L FA H + + + L +SP L+ E DR+ + + R
Sbjct: 64 AAPPADRPVSMLFQENNL-FA--HLTVEQNVGLGLSP---GLKLTAE--DRQAIEVALAR 115
Query: 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD----METIDALADA 562
GL G ++ P +LS G++ RV A + + +LLLDEP LD E +D + D
Sbjct: 116 VGLAGLEKRLP-GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDL 174
Query: 563 INDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
+ + +++V+H ++A+ + +NG++ +G
Sbjct: 175 HAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA-AQG 211
Score = 50.6 bits (121), Expect = 5e-07
Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 25/206 (12%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERV 172
G ++G +GSGKSTLL ++ E P + I + ++ A+ + M E +
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGV--DVTAAPPADRPVSMLFQENNL 81
Query: 173 RLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD 232
EQ V +L E A + GL ++++ +
Sbjct: 82 FAHLTVEQNVGLGLSPGL--------KLTAEDRQAIEVALARV--GLA---GLEKRLPGE 128
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVII 285
SGG R R+ALAR L +LLLDEP LD LD + L E K ++++
Sbjct: 129 LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKM---TVLMV 185
Query: 286 SHSQDFLNGVCTNIIHLDKRKLKYYG 311
+H + + ++ LD ++ G
Sbjct: 186 THQPEDAKRLAQRVVFLDNGRIAAQG 211
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 75.3 bits (185), Expect = 2e-15
Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 32/217 (14%)
Query: 409 YSDDGPWIYRNLEFGIDLDT----RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN--S 462
D + Y +L DL+ +A++GP+GAGKSTLLNLI G + P+ G ++ N S
Sbjct: 2 ALDKVRYEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQS 61
Query: 463 HLRFARY---------------HQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRY 507
H A Y H + + + L + P + + +E++ +
Sbjct: 62 HTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKL-----NAEQQEKVVDAAQQV 116
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD----METIDALADAI 563
G+ P QLS GQ+ RV A + +LLLDEP + LD E + +
Sbjct: 117 GIADYLDRLP-EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLC 175
Query: 564 NDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
++ + L++V+H +A +I + GK+ K
Sbjct: 176 SERQRTLLMVTHHLSDARAIASQIAVVSQGKI-KVVS 211
Score = 47.9 bits (114), Expect = 4e-06
Identities = 55/226 (24%), Positives = 84/226 (37%), Gaps = 55/226 (24%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI---DIFHLTR---EMPAS---DK 158
L + G ++G +G+GKSTLL ++ P I D H + P S +
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78
Query: 159 SALTCVMEVDEE-----RVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAA 213
+ L + V + L+ AEQ D Q + D DRL +
Sbjct: 79 NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE----------- 127
Query: 214 NILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE 273
SGG R R+ALAR L +LLLDEP + LD L E
Sbjct: 128 ------------------QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL----LRE 165
Query: 274 ELKTY--------KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
E+ +R L++++H + + I + + K+K
Sbjct: 166 EMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 76.4 bits (188), Expect = 2e-15
Identities = 63/221 (28%), Positives = 102/221 (46%), Gaps = 29/221 (13%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
+I +++ + YS N+ F ++R+A++GPNGAGKSTL G L P+ G V
Sbjct: 3 LIETRDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 459 ---------------RKNSHLRFARYH-QHLHELLDLDIS--PLDYMLQSFPEVKDR-EE 499
RK L F Q ++ DI+ P++ L V R
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDE-ETVAHRVSS 120
Query: 500 MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559
++G L R P LS G+K RV A + P +L+LDEPT LD + + L
Sbjct: 121 ALHMLGLEELRDR---VP-HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176
Query: 560 ADAINDF--EGGLVLV--SHDFRLINQVAEEIWICENGKVT 596
D +ND G+ ++ +H L+ ++A+ I++ + G++
Sbjct: 177 IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV 217
Score = 48.3 bits (115), Expect = 6e-06
Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 24/163 (14%)
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD- 264
+T R ++ LH LG +E++ + SGG + R+A+A + ++P +L+LDEPT LD
Sbjct: 112 ETVAHRVSSALHMLGL-EELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
Query: 265 ---LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK-- 319
+ +L + +TY ++ +H D + + I +DK ++ YG E F +
Sbjct: 171 QGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
Query: 320 ----TRLEL---------LENQ----MKQYNWEQDQIAHMKNY 345
L+L L+ Q Y +++ + A +K +
Sbjct: 231 LLARVHLDLPSLPKLIRSLQAQGIAIDMAYTYQEAEDAFLKAF 273
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 74.9 bits (185), Expect = 3e-15
Identities = 58/231 (25%), Positives = 94/231 (40%), Gaps = 52/231 (22%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +NVSF Y + N+ I ++A++G G+GKSTLL L+ G P+ G V
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 460 KNSHLRFARYHQHLHELLDLDISPLD---------YMLQ---------------SFPEVK 495
L DI LD Y+ Q P
Sbjct: 63 ----------------LDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLAD 106
Query: 496 DREEMR--KIIGRYGLTGRQ------QVCPI-RQLSDGQKCRVVFAYLAWQAPHLLLLDE 546
D +R ++ G + Q+ R LS GQ+ V A P +LLLDE
Sbjct: 107 DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDE 166
Query: 547 PTNHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKV 595
PT+ +DM + + L + + G L++++H L+ + + I + ++G++
Sbjct: 167 PTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRI 216
Score = 74.5 bits (184), Expect = 4e-15
Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 34/218 (15%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVP-----DHIDIFHLTREMPASD 157
L + L + G + ++G GSGKSTLL +L P D DI R++ +D
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDI----RQLDPAD 75
Query: 158 -KSALTCVMEVDEERVRL--EKLAEQLVACEDDESQEQLMDIYDR--LDDISADTAEARA 212
+ + V + V L L + + E+++ + + D
Sbjct: 76 LRRNIGYVPQ----DVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNK------ 125
Query: 213 ANILHGLGFTKEMQ-QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWL 271
H G ++Q ++ + SGG R +ALARAL P +LLLDEPT+ +D+++ L
Sbjct: 126 ----HPNGL--DLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 272 EEELKTYK--RILVIISHSQDFLNGVCTNIIHLDKRKL 307
+E L+ + L+II+H L+ + II +D ++
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLD-LVDRIIVMDSGRI 216
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 78.8 bits (195), Expect = 3e-15
Identities = 66/229 (28%), Positives = 98/229 (42%), Gaps = 56/229 (24%)
Query: 404 NVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH 463
NVSF Y N+ I ++A++G G+GKSTLL L+ G P+ G V
Sbjct: 468 NVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV----- 522
Query: 464 LRFARYHQHLHELLD-LDISPLD---------YMLQS---F------------PEVKDRE 498
LLD +DI +D Y+ Q F P D E
Sbjct: 523 ------------LLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADD-E 569
Query: 499 EMRKIIGRYGLTG--RQQVC----PI----RQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
E+ + G+T R+ I R LS GQ+ V A + P +LLLDEPT
Sbjct: 570 EILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPT 629
Query: 549 NHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKV 595
+ +D + + D + + G LVLV+H L++ V + I + +NG++
Sbjct: 630 SAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLV-DRIIVMDNGRI 677
Score = 66.8 bits (164), Expect = 2e-11
Identities = 62/227 (27%), Positives = 98/227 (43%), Gaps = 52/227 (22%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVP-----DHIDIFHLTREMPASD 157
L + L + G + ++G GSGKSTLL +L P D +DI R++ +D
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI----RQIDPAD 536
Query: 158 -KSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAE-ARAANI 215
+ + V + + R+ L + + L AD E RAA +
Sbjct: 537 LRRNIGYVPQ--DPRLFYGTLRDNIA-----------------LGAPYADDEEILRAAEL 577
Query: 216 --------LHGLGFTKEMQ-QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266
H G +MQ ++ + SGG R +ALARAL P +LLLDEPT+ +D
Sbjct: 578 AGVTEFVRRHPDGL--DMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNR 635
Query: 267 ACVWLEEELKTY------KRILVIISHSQDFLNGVCTNIIHLDKRKL 307
+ EE K + LV+++H L+ + II +D ++
Sbjct: 636 S----EERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRI 677
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 78.6 bits (194), Expect = 3e-15
Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 56/247 (22%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI------------ 447
I +NVSF Y P + +++ F I+ ++A+VGP+G+GKSTL+ L+
Sbjct: 329 IEFENVSFSYPGKKP-VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387
Query: 448 ----------YGDLTPSVGMVRKNSHL---------RFARYHQHLHELLD-LDISPLDYM 487
L +G+V ++ L R E+ + L ++
Sbjct: 388 IDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEF 447
Query: 488 LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP 547
+ + P+ D I+G G+ LS GQ+ R+ A + P +L+LDE
Sbjct: 448 IANLPDGYDT-----IVGERGVN----------LSGGQRQRLAIARALLRNPPILILDEA 492
Query: 548 TNHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY 605
T+ LD ET + DA+ G ++++H I A+ I + +NG++ + G
Sbjct: 493 TSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVE-RGT---- 546
Query: 606 KETLRAK 612
E L AK
Sbjct: 547 HEELLAK 553
Score = 61.7 bits (150), Expect = 7e-10
Identities = 64/267 (23%), Positives = 107/267 (40%), Gaps = 51/267 (19%)
Query: 80 AVHPKSRDVKIANFSITFHGCEL-LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV 138
+ ++ N S ++ G + L+D + G + ++G +GSGKSTL+ +L R
Sbjct: 321 PLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLL-LRLY 379
Query: 139 PVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQL--VACEDDESQE-QLMD 195
P +I + +D + L+ L +++ V SQ+ L
Sbjct: 380 D-PTSGEIL----------------IDGIDIRDISLDSLRKRIGIV------SQDPLLFS 416
Query: 196 --IYD--RLDDISADTAEA-RAANILHGLGFTKEMQQK-------KTKDFSGGWRMRIAL 243
I + L A E A + + F + + + SGG R R+A+
Sbjct: 417 GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAI 476
Query: 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHSQDFLNGVCTNIIH 301
ARAL P +L+LDE T+ LD + +++ LK R +II+H + II
Sbjct: 477 ARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIV 535
Query: 302 LDKRKLKYYGGNYEAFCKTRLELLENQ 328
LD ++ G T ELL
Sbjct: 536 LDNGRIVERG--------THEELLAKG 554
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 77.0 bits (190), Expect = 4e-15
Identities = 63/223 (28%), Positives = 95/223 (42%), Gaps = 32/223 (14%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSV 455
I + NV R+ + L+ I LD + +AL+GP+GAGKSTLL +I G TP
Sbjct: 3 IRINNVKKRFGA-----FGALD-DISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA 56
Query: 456 GMVR---------KNSHLR-------FARYHQHLHELLDLDIS-PLDYMLQSFPEVKDRE 498
G +R N +R F Y H + +I+ L + E + R
Sbjct: 57 GRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRA 116
Query: 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM----E 554
+ +++ L G P QLS GQ+ RV A P +LLLDEP LD E
Sbjct: 117 RVEELLRLVQLEGLADRYP-AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE 175
Query: 555 TIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTK 597
L + V V+HD ++A+ + + G++ +
Sbjct: 176 LRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ 218
Score = 73.2 bits (180), Expect = 5e-14
Identities = 64/254 (25%), Positives = 102/254 (40%), Gaps = 54/254 (21%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++I N F L D L++ G LLG +G+GKSTLL ++ E P I
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI-RL 61
Query: 148 HLTREMPASDKS-------------ALTCVMEVDEE-----RVRLEKLAEQLVACEDDES 189
+ S+ + AL M V + +VR E+ +E E
Sbjct: 62 NGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEA----EIRAR 117
Query: 190 QEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYV 249
E+L+ + +L+ + + SGG R R+ALARAL V
Sbjct: 118 VEELLRLV-QLEG----------------------LADRYPAQLSGGQRQRVALARALAV 154
Query: 250 KPHLLLLDEPTNHLDLDACV------WLEEELKTYKRILVIISHSQDFLNGVCTNIIHLD 303
+P +LLLDEP LDA V WL + V ++H Q+ + ++ L+
Sbjct: 155 EPKVLLLDEPFG--ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLN 212
Query: 304 KRKLKYYGGNYEAF 317
+ +++ G E +
Sbjct: 213 QGRIEQVGPPDEVY 226
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 75.2 bits (186), Expect = 4e-15
Identities = 68/238 (28%), Positives = 98/238 (41%), Gaps = 59/238 (24%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTP 453
++ +N+S R R L + L R +A++GPNGAGKSTLL + G+L+P
Sbjct: 1 AMLEARNLSVRLGG------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP 54
Query: 454 SVGMVRKN-------SHLRFARY------HQHL------HELLDLDISPLDYMLQSFPEV 494
G VR N S AR H L E++ + +P
Sbjct: 55 DSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH-----GLSRA 109
Query: 495 KDREEMRKIIGRYGLT---GRQQVCPIRQLSDGQKCRVVFA-YLA--WQA---PHLLLLD 545
+D + + + L GR QLS G++ RV A LA W+ P LLLD
Sbjct: 110 EDDALVAAALAQVDLAHLAGR----DYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLD 165
Query: 546 EPTNHLD-------METIDALADAINDFEGGLVL-VSHDFRLINQVAEEIWICENGKV 595
EPT+ LD + LA G V+ V HD L + A+ I + G++
Sbjct: 166 EPTSALDLAHQHHVLRLARQLAHE----RGLAVIVVLHDLNLAARYADRIVLLHQGRL 219
Score = 45.1 bits (108), Expect = 4e-05
Identities = 20/42 (47%), Positives = 23/42 (54%)
Query: 92 NFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
N S+ G LL D L L G +LG NG+GKSTLL L
Sbjct: 7 NLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL 48
Score = 39.8 bits (94), Expect = 0.002
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 234 SGGWRMRIALARAL------YVKPHLLLLDEPTNHLDL 265
SGG + R+ LAR L P LLLDEPT+ LDL
Sbjct: 136 SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 75.5 bits (186), Expect = 4e-15
Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 28/219 (12%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
+I V+++ FRY D G + L I ++ AL+GPNGAGKSTLL + G P G V
Sbjct: 4 IIEVEDLHFRYKD-GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 459 RKNSHLRFARYHQHLHELL------------------DLDISPLDYMLQSFPEVKDR-EE 499
+ A + + + D+ P++ L EV+ R EE
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDK-DEVERRVEE 121
Query: 500 MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD---METI 556
K + + + P LS GQK RV A + P +++LDEP +LD ET+
Sbjct: 122 ALKAVRMWDFRDK----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL 177
Query: 557 DALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
+ D +++ +++ +HD L + A+++ + + G+V
Sbjct: 178 MEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRV 216
Score = 38.9 bits (91), Expect = 0.005
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 24/158 (15%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERV 172
G + LLG NG+GKSTLL H++ +L EV+ E
Sbjct: 31 GSKTALLGPNGAGKSTLLL-----------HLNGIYL-----PQRGRVKVMGREVNAENE 74
Query: 173 RLEKLAEQLVACEDDESQEQLMDIYDRLD------DISADTAEARAANILHGLGFTKEMQ 226
+ + LV +D + Q ++D + + D E R L + + +
Sbjct: 75 KWVRSKVGLVF-QDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM-WDFR 132
Query: 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
K S G + R+A+A L + P +++LDEP +LD
Sbjct: 133 DKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLD 170
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 74.9 bits (184), Expect = 5e-15
Identities = 66/201 (32%), Positives = 87/201 (43%), Gaps = 26/201 (12%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERV 172
G GLLG NGSGKSTLL +L P +D + D L+ R
Sbjct: 27 GSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVD-------LAGVDLHGLS-----RRARA 74
Query: 173 RLEKLAEQLVACEDDESQEQLMDI--YDRLDDIS--ADTAEARAANILHGLGFTKEMQQK 228
R L EQ D + D+ R+ S A + AA + L T E+
Sbjct: 75 RRVALVEQDS---DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART-ELSHL 130
Query: 229 KTKDF---SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA---CVWLEEELKTYKRIL 282
+D SGG R R+ +ARAL +P LLLLDEPTNHLD+ A + L EL +
Sbjct: 131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTV 190
Query: 283 VIISHSQDFLNGVCTNIIHLD 303
V H + C +++ LD
Sbjct: 191 VAALHDLNLAASYCDHVVVLD 211
Score = 72.2 bits (177), Expect = 4e-14
Identities = 56/193 (29%), Positives = 82/193 (42%), Gaps = 36/193 (18%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVG-----------MVRKNSHLRFARYHQHLHELLDL 479
L+GPNG+GKSTLL L+ G L P G + R+ R A Q +
Sbjct: 31 GLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDT--AV 88
Query: 480 DISPLD-YMLQSFP--------EVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQKC 527
++ D L P D + + + R L+ R + LS G++
Sbjct: 89 PLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD----MSTLSGGERQ 144
Query: 528 RVVFAYLAWQAPHLLLLDEPTNHLD----METIDALADAINDFEGGLVLVS-HDFRLINQ 582
RV A Q P LLLLDEPTNHLD +ET+ + + G V+ + HD L
Sbjct: 145 RVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT--GVTVVAALHDLNLAAS 202
Query: 583 VAEEIWICENGKV 595
+ + + + G+V
Sbjct: 203 YCDHVVVLDGGRV 215
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 77.8 bits (192), Expect = 6e-15
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 24/200 (12%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
P + ++++S Y P + + + R+A++GP+G+GKSTLL + G L P G
Sbjct: 333 PTLELRDLSAGY-PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGE 391
Query: 458 VRKNSHLRFARYHQHLHELLDL--------DISPLDYMLQSFPEVKDREEMRKIIGRYGL 509
V + + + + + D + + + + P+ D EE+ + R GL
Sbjct: 392 VTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATD-EELWAALERVGL 450
Query: 510 TGRQQVCPI----------RQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLDMETIDA 558
+ P +LS G++ R+ A L AP +LLLDEPT HLD ET D
Sbjct: 451 ADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAP-ILLLDEPTEHLDAETADE 509
Query: 559 LADAINDFEGGL--VLVSHD 576
L + + G VL++H
Sbjct: 510 LLEDLLAALSGRTVVLITHH 529
Score = 70.1 bits (172), Expect = 1e-12
Identities = 71/246 (28%), Positives = 106/246 (43%), Gaps = 31/246 (12%)
Query: 56 EALCRKLEA-DAKLNAEARACTGSLAVHPKSRDVKIANFSITFHG-CELLQDTMLELNCG 113
A R +E DA + + AV +++ + S + G +L L+L G
Sbjct: 302 AAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPG 361
Query: 114 RRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPAS-DKSALTCVMEVDEERV 172
R +LG +GSGKSTLLA L + P ++ L +S D+ + + V +
Sbjct: 362 ERVAILGPSGSGKSTLLATL-AGLLD-PLQGEVT-LDGVPVSSLDQDEVRRRVSVCAQDA 418
Query: 173 RL------EKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL--GFTKE 224
L E L +A D + E+L +R A+ L L G
Sbjct: 419 HLFDTTVRENL---RLARPD-ATDEELWAALER----------VGLADWLRALPDGLDTV 464
Query: 225 MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL--KTYKRIL 282
+ + + SGG R R+ALARAL +LLLDEPT HLD + L E+L R +
Sbjct: 465 LGEGGAR-LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTV 523
Query: 283 VIISHS 288
V+I+H
Sbjct: 524 VLITHH 529
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 73.9 bits (182), Expect = 9e-15
Identities = 59/185 (31%), Positives = 77/185 (41%), Gaps = 28/185 (15%)
Query: 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHL 149
+A S + L D + GR LLG NG+GKSTL ++L
Sbjct: 4 VAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLL---------------- 47
Query: 150 TR--EMPASDKSALTCVMEVDEERVRLEKLAE-----QLVACEDDESQEQLMDIYDRLDD 202
TR S V D R LA Q + D S Q + + L
Sbjct: 48 TRLYVAQEGQIS----VAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHG 103
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+S A AR A +L LG E K ++ +GG R R+ +ARAL +P LLLLDEPT
Sbjct: 104 LSRAEARARIAELLARLGLA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVG 162
Query: 263 LDLDA 267
LD +
Sbjct: 163 LDPAS 167
Score = 72.3 bits (178), Expect = 3e-14
Identities = 60/182 (32%), Positives = 81/182 (44%), Gaps = 26/182 (14%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGM 457
V +SFRY G R L+ + R +AL+GPNGAGKSTL +L+ G
Sbjct: 4 VAGLSFRY---GA--RRALD-DVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 458 VRKNSH-LRFARYHQHLHEL--------LDLDIS---PLDYM--LQSFPEVKDREEMRKI 503
+ H LR A L L LDLD+S L Y L + R + ++
Sbjct: 58 ISVAGHDLRRAP-RAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAEL 116
Query: 504 IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAI 563
+ R GL R +R+L+ G + RV A P LLLLDEPT LD + A+ +
Sbjct: 117 LARLGLAERADD-KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHV 175
Query: 564 ND 565
Sbjct: 176 RA 177
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 73.0 bits (179), Expect = 1e-14
Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 15/173 (8%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
PP++ ++F ++ P ++ L+F +D L + G NGAGK+TLL ++ G L G
Sbjct: 9 PPLLAAHALAFS-RNEEP-VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESG 66
Query: 457 MVRKNSH-------LRFARYHQHLHELLDLDISPLD--YMLQSFPEVKDREEMRKIIGRY 507
++ + RF Y HL L D+S L+ + L + ++ +
Sbjct: 67 QIQIDGKTATRGDRSRFMAYLGHLPG-LKADLSTLENLHFLCGLHGRRAKQMPGSALAIV 125
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH-LLLLDEPTNHLDMETIDAL 559
GL G + +RQLS GQK R+ A L W +P L LLDEP +LD+E I +
Sbjct: 126 GLAGYEDTL-VRQLSAGQKKRLALARL-WLSPAPLWLLDEPYANLDLEGITLV 176
Score = 38.3 bits (89), Expect = 0.005
Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 21/172 (12%)
Query: 110 LNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDE 169
++ G + G NG+GK+TLL VL I I K+A
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQI---------DGKTATRG------ 78
Query: 170 ERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKK 229
+R R L + D S + + L + A+ + L +G +
Sbjct: 79 DRSRFMAYLGHLPGLKADLSTLENLHF---LCGLHGRRAKQMPGSALAIVGLA-GYEDTL 134
Query: 230 TKDFSGGWRMRIALARALYVKPH-LLLLDEPTNHLDLDACVWLEEELKTYKR 280
+ S G + R+ALAR L++ P L LLDEP +LDL+ + + + R
Sbjct: 135 VRQLSAGQKKRLALAR-LWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR 185
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 73.5 bits (181), Expect = 1e-14
Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 38/218 (17%)
Query: 411 DDGPWIYRNLEFGIDLDT----RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN--SHL 464
DD + Y +L DL +A++GP+GAGKSTLLNLI G TP+ G + N H
Sbjct: 5 DDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHT 64
Query: 465 RFARY---------------HQHLHELLDLDISP---LDYMLQSFPEVKDREEMRKIIGR 506
H + + + L +SP L+ + RE++ +
Sbjct: 65 ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLN--------AEQREKVEAAAAQ 116
Query: 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD----METIDALADA 562
GL G + P +LS GQ+ RV A + +LLLDEP + LD E + ++
Sbjct: 117 VGLAGFLKRLP-GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQL 175
Query: 563 INDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
++ + L++V+H ++A+ + +NG++ +G
Sbjct: 176 CDERKMTLLMVTHHPEDAARIADRVVFLDNGRI-AAQG 212
Score = 52.0 bits (125), Expect = 2e-07
Identities = 48/218 (22%), Positives = 83/218 (38%), Gaps = 39/218 (17%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167
L + G +LG +G+GKSTLL ++ E P I I + AS + M
Sbjct: 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILI--NGVDHTASPPAERPVSMLF 77
Query: 168 DEERVRLEKLAEQLVA------CEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGF 221
E + Q + + + Q + ++ +G
Sbjct: 78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVE------------------AAAAQVGL 119
Query: 222 TKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--- 278
+++ + SGG R R+ALAR L + +LLLDEP + LD L E+
Sbjct: 120 AGFLKRLPGE-LSGGQRQRVALARCLVREQPILLLDEPFSALDPA----LRAEMLALVSQ 174
Query: 279 -----KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
K L++++H + + ++ LD ++ G
Sbjct: 175 LCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQG 212
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 72.7 bits (179), Expect = 2e-14
Identities = 52/202 (25%), Positives = 80/202 (39%), Gaps = 38/202 (18%)
Query: 424 IDLDT---RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLD 480
ID D + G +GAGKSTLL I G P G + N + F + ++
Sbjct: 17 IDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKK-------IN 69
Query: 481 ISPLD----YMLQS---FPEV----------------KDREEMRKIIGRYGLTGRQQVCP 517
+ P + Q FP + +DR + +++ GL
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNR-Y 128
Query: 518 IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIN----DFEGGLVLV 573
QLS G+K RV A P LLLLDEP + LD L + + ++ V
Sbjct: 129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFV 188
Query: 574 SHDFRLINQVAEEIWICENGKV 595
+HD +A+ I + E+G++
Sbjct: 189 THDLSEAEYLADRIVVMEDGRL 210
Score = 58.1 bits (141), Expect = 2e-09
Identities = 54/213 (25%), Positives = 85/213 (39%), Gaps = 43/213 (20%)
Query: 117 GLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRL-- 174
G+ G +G+GKSTLL + E P I + S + + ++ L
Sbjct: 27 GIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVL-----FDSRKKINLPPQQRKIGLVF 81
Query: 175 ------------EKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT 222
E LA L + E + + ++ D L GL
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLL-----------------GLD-- 122
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL 282
+ + SGG + R+ALARAL +P LLLLDEP + LD + L ELK K+ L
Sbjct: 123 -HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL 181
Query: 283 ----VIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
+ ++H + I+ ++ +L+Y G
Sbjct: 182 NIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 73.5 bits (181), Expect = 2e-14
Identities = 59/236 (25%), Positives = 101/236 (42%), Gaps = 38/236 (16%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
P ++ + VS + G +L F +D L+GPNGAGK+TL+++I G P G
Sbjct: 3 PIILYLDGVSVSF--GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEG 60
Query: 457 MV--------RKNSHLRFAR------------YHQH-LHELLDLDI-------SPLDYML 488
V K R AR + + E L+L + + L L
Sbjct: 61 EVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARL 120
Query: 489 QSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
++ ++R + +++ GL + LS GQK + L Q P LLLLDEP
Sbjct: 121 RA----EERRRIDELLATIGLGDERDR-LAALLSHGQKQWLEIGMLLAQDPKLLLLDEPV 175
Query: 549 NHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTKWEGNI 602
+ + A+ + G +++V HD + ++A+++ + G V EG++
Sbjct: 176 AGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLA-EGSL 230
Score = 32.3 bits (74), Expect = 0.56
Identities = 44/182 (24%), Positives = 68/182 (37%), Gaps = 23/182 (12%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR------EVPVPD 142
+ S++F G + L D ++ G L+G NG+GK+TL+ V+ + EV
Sbjct: 7 YLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG 66
Query: 143 HIDIF----HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD 198
D+ H K V E R LE +A D+S ++
Sbjct: 67 DTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLE------LALNRDKS------VFA 114
Query: 199 RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDE 258
L R +L +G E + + S G + + + L P LLLLDE
Sbjct: 115 SLFARLRAEERRRIDELLATIGLGDE-RDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDE 173
Query: 259 PT 260
P
Sbjct: 174 PV 175
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 74.3 bits (183), Expect = 2e-14
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 23/206 (11%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK---SALTCV 164
++ G +G LG NG+GK+T + +L L R P S + V
Sbjct: 14 FKVREGEVFGFLGPNGAGKTTTIRMLTT-------------LLR--PTSGTARVAGYDVV 58
Query: 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKE 224
E + R + + Q + ++D + + +++ RL + D AE RA +L E
Sbjct: 59 REPRKVRRSI-GIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG-E 116
Query: 225 MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD--ACVW-LEEELKTYKRI 281
+ +SGG R R+ +A +L +P +L LDEPT LD +W LK
Sbjct: 117 AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVT 176
Query: 282 LVIISHSQDFLNGVCTNIIHLDKRKL 307
+++ +H + + +C I +D ++
Sbjct: 177 ILLTTHYMEEADKLCDRIAIIDHGRI 202
Score = 59.3 bits (144), Expect = 2e-09
Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 34/218 (15%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH--LRFARYHQHLHEL 476
G++ R +GPNGAGK+T + ++ L P+ G R + +R R ++
Sbjct: 11 GVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPR------KV 64
Query: 477 ------------LDLDISPLDYM-----LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
+D D++ + + L P+ + E +++ + L P+
Sbjct: 65 RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR-PVG 123
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLV-SHD 576
S G + R+ A P +L LDEPT LD T A+ D I EG +L+ +H
Sbjct: 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY 183
Query: 577 FRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVL 614
+++ + I I ++G++ EG + K L L
Sbjct: 184 MEEADKLCDRIAIIDHGRIIA-EGTPEELKRRLGKDTL 220
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 72.6 bits (179), Expect = 2e-14
Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 35/234 (14%)
Query: 399 VIMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
+I ++NVS + D G + +++ + ++G +GAGKSTL+ I G P+ G
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60
Query: 457 MVR---------KNSHLRFARYH-----QHLHELLDLDIS-----PLDYMLQSFPEVKDR 497
V LR AR QH + L + PL+ E+++R
Sbjct: 61 SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEER 120
Query: 498 -EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMET 555
E+ +++ GL + P QLS GQK RV A LA P +LL DE T+ LD ET
Sbjct: 121 VLELLELV---GLEDKADAYP-AQLSGGQKQRVGIARALANN-PKVLLCDEATSALDPET 175
Query: 556 ---IDALADAINDFEGGL--VLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604
I AL IN E GL VL++H+ ++ ++ + + + E G+V + EG + +
Sbjct: 176 TQSILALLRDINR-ELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE-EGTVEE 227
Score = 49.9 bits (120), Expect = 1e-06
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRI-------LVIIS 286
SGG + R+ +ARAL P +LL DE T+ LD + + L + I +V+I+
Sbjct: 142 SGGQKQRVGIARALANNPKVLLCDEATSALDPETT---QSILALLRDINRELGLTIVLIT 198
Query: 287 HSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
H + + +C + ++K ++ G E F
Sbjct: 199 HEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
Score = 33.7 bits (78), Expect = 0.20
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 88 VKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLL 130
+++ N S F L+D L + G +G++G +G+GKSTL+
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLI 48
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 73.0 bits (180), Expect = 2e-14
Identities = 69/237 (29%), Positives = 101/237 (42%), Gaps = 45/237 (18%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDL 451
P P+I V+ V+ + D R + G+DLD LA++G +G+GKSTLL LI G L
Sbjct: 5 PEPLIEVRGVTKSFGD------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58
Query: 452 TPSVGMVRKNSHLRFARYHQHLHELLDLDI-SPLDYMLQS--------------FPEVK- 495
P G + L E +I + + Q FP +
Sbjct: 59 RPDKGEILI-----DGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH 113
Query: 496 ---DREEMRKI----IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
+R++ + GL G +LS G + RV A P LL LDEPT
Sbjct: 114 TKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPT 173
Query: 549 NHLD---METIDALADAINDFEGGL--VLVSHDFRLINQVAEEIWICENGKVTKWEG 600
+ LD ID L +ND GL ++V+HD + +A+ + + +GKV EG
Sbjct: 174 SGLDPISAGVIDELIRELND-ALGLTVIMVTHDLDSLLTIADRVAVLADGKV-IAEG 228
Score = 52.2 bits (126), Expect = 2e-07
Identities = 54/211 (25%), Positives = 85/211 (40%), Gaps = 28/211 (13%)
Query: 113 GRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEER 171
G +LG +GSGKSTLL +LG PD +I ++P + L E R
Sbjct: 34 GEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEEEL------YEIR 84
Query: 172 VRLEKLAEQLVACEDDESQEQLMDIYD-------RLDDISADTAEARAANILHGLGFTKE 224
R+ L Q A + +++ + L +G
Sbjct: 85 KRMGVLF-QQGALFSS------LTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGA 137
Query: 225 MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL-- 282
+ SGG R R+ALARA+ + P LL LDEPT+ LD + ++E ++ L
Sbjct: 138 AADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL 197
Query: 283 --VIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
++++H D L + + L K+ G
Sbjct: 198 TVIMVTHDLDSLLTIADRVAVLADGKVIAEG 228
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 72.6 bits (179), Expect = 2e-14
Identities = 62/243 (25%), Positives = 99/243 (40%), Gaps = 41/243 (16%)
Query: 82 HPKSRDVKIANFSITFHGC-----ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR 136
H KS +K + G L+D E+ G R G++G NG+GKSTLL ++
Sbjct: 17 HEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI 76
Query: 137 EVP----VPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQ 192
P V + L E+ A LT E + L L ++ E E
Sbjct: 77 YKPTSGKVKVTGKVAPLI-ELGAGFDPELT-----GRENIYLRGL---ILGLTRKEIDE- 126
Query: 193 LMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH 252
++D+I + AE LG + + K +S G R+A + A +V+P
Sbjct: 127 ------KVDEI-IEFAE---------LG---DFIDQPVKTYSSGMYARLAFSVATHVEPD 167
Query: 253 LLLLDEPTNHLD---LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKY 309
+LLLDE D + C+ EL + +V++SH + C I L+ +++
Sbjct: 168 ILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRM 227
Query: 310 YGG 312
G
Sbjct: 228 EGS 230
Score = 72.6 bits (179), Expect = 3e-14
Identities = 57/244 (23%), Positives = 99/244 (40%), Gaps = 46/244 (18%)
Query: 400 IMVQNVSFRYSDDGP-WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
++ ++ W +++ F I R+ ++G NGAGKSTLL LI G P+ G V
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 459 RKNSHLRFARYHQHLHELLDLDISPLD---------YMLQSFPEVKDREEMRKI------ 503
+ + L++L D Y+ + R+E+ +
Sbjct: 85 KVTGKVAP---------LIELGAG-FDPELTGRENIYLRGLILGLT-RKEIDEKVDEIIE 133
Query: 504 ---IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALA 560
+G + P++ S G R+ F+ P +LLLDE D +
Sbjct: 134 FAELGDFIDQ------PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187
Query: 561 DAINDF---EGGLVLVSHDFRLINQVAEE-IWICENGKVTKWEGNILD----YKETLRAK 612
+ +N+ +VLVSHD I Q + IW+ E+G++ EG+ + Y+E L +
Sbjct: 188 ERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWL-EHGQIRM-EGSPEEVIPAYEEDLADR 245
Query: 613 VLKE 616
+
Sbjct: 246 LSLN 249
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 71.6 bits (176), Expect = 3e-14
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 43/215 (20%)
Query: 113 GRRYGLLGLNGSGKSTLLAVL--------GNREVPVPDHIDIFHLTREMPA-----SDKS 159
G GLLG NG+GK+T L +L G V D D+ E SD +
Sbjct: 31 GEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV---DGFDVVKEPAEARRRLGFVSDST 87
Query: 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL 219
L + E ++ + L + D AR + L
Sbjct: 88 GLYDRLTARE-----------------------NLEYFAGLYGLKGDELTARLEELADRL 124
Query: 220 GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK 279
G +E+ ++ FS G R ++A+ARAL P +LLLDEPT LD+ A L E ++ +
Sbjct: 125 GM-EELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR 183
Query: 280 RI---LVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
+ ++ +H + +C ++ L + ++ Y G
Sbjct: 184 ALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
Score = 63.9 bits (156), Expect = 2e-11
Identities = 52/218 (23%), Positives = 85/218 (38%), Gaps = 27/218 (12%)
Query: 400 IMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
I ++ R+ D + + F + L+GPNGAGK+T L ++ G L P G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 458 VRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCP 517
+ F + L L + + RE + G YGL G +
Sbjct: 62 ATVDG---FDVVKEPAEARRRLGFVSDSTGL--YDRLTARENLEYFAGLYGLKGDELTAR 116
Query: 518 IRQLSD-----------------GQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALA 560
+ +L+D G + +V A P +LLLDEPT LD+ AL
Sbjct: 117 LEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176
Query: 561 DAINDF--EGGLVLVS-HDFRLINQVAEEIWICENGKV 595
+ I G +L S H + + ++ + + + G+V
Sbjct: 177 EFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRV 214
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 71.5 bits (176), Expect = 4e-14
Identities = 61/233 (26%), Positives = 101/233 (43%), Gaps = 31/233 (13%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+++ N + + L L L G YGLLG NG+GK+TL+ +L P I
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTI--- 56
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
+ D + + + R R+ L Q + + + +D L I +
Sbjct: 57 ----RIDGQD-----VLKQPQKLRRRIGYLP-QEFGVYPNFTVREFLDYIAWLKGIPSKE 106
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
+AR +L + + +KK SGG R R+ +A+AL P +L++DEPT LD
Sbjct: 107 VKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD--- 162
Query: 268 CVWLEEELKTYKRIL--------VIIS-HSQDFLNGVCTNIIHLDKRKLKYYG 311
EE ++ +L VI+S H + + +C + L+K KL + G
Sbjct: 163 ----PEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
Score = 68.8 bits (169), Expect = 3e-13
Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 34/223 (15%)
Query: 400 IMVQNVSFRYSDDGPWIYR--NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
+ ++N++ RY +L G + L+GPNGAGK+TL+ ++ PS G
Sbjct: 1 LQLENLTKRY--GKKRALDGVSLTLGPGM---YGLLGPNGAGKTTLMRILATLTPPSSGT 55
Query: 458 VRKNSHLRFARYHQHLHELL-----DLDISP-------LDYM--LQSFPEVKDREEMRKI 503
+R + + Q L + + + P LDY+ L+ P + + + ++
Sbjct: 56 IRIDGQ-DVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEV 114
Query: 504 IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA----PHLLLLDEPTNHLDMETIDAL 559
+ L R + I LS G + RV A QA P +L++DEPT LD E
Sbjct: 115 LELVNLGDRAKK-KIGSLSGGMRRRVGIA----QALVGDPSILIVDEPTAGLDPEERIRF 169
Query: 560 ADAINDF-EGGLVLVS-HDFRLINQVAEEIWICENGKVTKWEG 600
+ +++ E +V++S H + + ++ + GK+ +EG
Sbjct: 170 RNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKL-VFEG 211
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 70.6 bits (174), Expect = 6e-14
Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 41/205 (20%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPS------------------------ 454
GIDL + + ++GP+G+GKSTLL I P
Sbjct: 18 GIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77
Query: 455 VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQ 514
VGMV + +L F HL L ++ ++P+ ++ + + E +++ + GL +
Sbjct: 78 VGMVFQQFNL-FP----HLTVLENITLAPI--KVKGMSKAEAEERALELLEKVGLADKAD 130
Query: 515 VCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EG-GL 570
P QLS GQ+ RV A LA P ++L DEPT+ LD E + + D + D EG +
Sbjct: 131 AYP-AQLSGGQQQRVAIARALAMN-PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTM 188
Query: 571 VLVSHDFRLINQVAEEIWICENGKV 595
V+V+H+ +VA+ + ++G++
Sbjct: 189 VVVTHEMGFAREVADRVIFMDDGRI 213
Score = 64.1 bits (157), Expect = 1e-11
Identities = 60/233 (25%), Positives = 95/233 (40%), Gaps = 39/233 (16%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++I N +F +L+ L + G ++G +GSGKSTLL + E P I I
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 148 HLTREMPASDKSALTCVMEVD---------EERVRLEKLAEQLVACEDDESQEQLMDIYD 198
L ++ K+ +V LE + +
Sbjct: 61 GL--KLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPI---------------- 102
Query: 199 RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDE 258
++ +S AE RA +L +G + SGG + R+A+ARAL + P ++L DE
Sbjct: 103 KVKGMSKAEAEERALELLEKVGL-ADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE 161
Query: 259 PTNHLD-------LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDK 304
PT+ LD LD L EE T +V+++H F V +I +D
Sbjct: 162 PTSALDPELVGEVLDVMKDLAEEGMT----MVVVTHEMGFAREVADRVIFMDD 210
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 71.0 bits (175), Expect = 8e-14
Identities = 63/235 (26%), Positives = 106/235 (45%), Gaps = 58/235 (24%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLD----TRLALVGPNGAGKSTLL--------- 444
+I ++N+S + D L+ GI L + ++GP+G+GKSTLL
Sbjct: 1 MMIEIKNLSKSFGD-----KEVLK-GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP 54
Query: 445 ---NLIYGDLTPS-----------VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQS 490
++ VGMV + +L F HL L ++ ++P+
Sbjct: 55 DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNL-FP----HLTVLENVTLAPV------ 103
Query: 491 FPEVK--DREEMRKI----IGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLL 543
+VK + E R+ + + GL + P QLS GQ+ RV A LA P ++L
Sbjct: 104 --KVKKLSKAEAREKALELLEKVGLADKADAYP-AQLSGGQQQRVAIARALAMD-PKVML 159
Query: 544 LDEPTNHLDMETIDALADAINDF--EG-GLVLVSHDFRLINQVAEEIWICENGKV 595
DEPT+ LD E + + D + D EG +++V+H+ +VA+ + + GK+
Sbjct: 160 FDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKI 214
Score = 62.1 bits (152), Expect = 8e-11
Identities = 65/245 (26%), Positives = 97/245 (39%), Gaps = 64/245 (26%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-------- 139
++I N S +F E+L+ L + G ++G +GSGKSTLL L E P
Sbjct: 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD 62
Query: 140 ---VPDHIDIFHLTREM----------PASDKSALTCVMEVDEERVRLEKLAEQLVACED 186
V D DI L R++ P + L V +V+ AE
Sbjct: 63 GEDVGDKKDILKLRRKVGMVFQQFNLFP--HLTVLENVTLA-PVKVKKLSKAE------- 112
Query: 187 DESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246
A +A +L +G + SGG + R+A+ARA
Sbjct: 113 ---------------------AREKALELLEKVGL-ADKADAYPAQLSGGQQQRVAIARA 150
Query: 247 LYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNI 299
L + P ++L DEPT+ LD LD L EE T ++I++H F V +
Sbjct: 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMT----MIIVTHEMGFAREVADRV 206
Query: 300 IHLDK 304
I +D+
Sbjct: 207 IFMDQ 211
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 71.0 bits (175), Expect = 9e-14
Identities = 69/232 (29%), Positives = 100/232 (43%), Gaps = 44/232 (18%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSV 455
I ++ ++ + + + G+DLD R LA++GP+G+GKSTLL LI G L P
Sbjct: 1 IELRGLTKSFGGRT--VLK----GVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS 54
Query: 456 GMVR---------KNSHLRFARYH-----QHLHELLDLDIS-----PLDYMLQSFPEVKD 496
G V + L R Q L + PL E +
Sbjct: 55 GEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPL-REHTRLSEEEI 113
Query: 497 REEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA----PHLLLLDEPTNHLD 552
RE + + + GL G + + P +LS G K RV A +A P LLL DEPT LD
Sbjct: 114 REIVLEKLEAVGLRGAEDLYP-AELSGGMKKRVALA----RALALDPELLLYDEPTAGLD 168
Query: 553 METIDALADAINDF--EGGL--VLVSHDFRLINQVAEEIWICENGKVTKWEG 600
+ D I E GL ++V+HD +A+ I + +GK+ EG
Sbjct: 169 PIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV-AEG 219
Score = 56.4 bits (137), Expect = 8e-09
Identities = 55/239 (23%), Positives = 100/239 (41%), Gaps = 43/239 (17%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI--- 144
+++ + +F G +L+ L++ G ++G +GSGKSTLL ++ P +
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60
Query: 145 --DIFHLTREMPASDKSALTCVMEVDEERVRLEK---LAEQLVACEDDESQEQLMDIYDR 199
DI L+ E RL + + Q A D + +++
Sbjct: 61 GEDISGLSEA-----------------ELYRLRRRMGMLFQSGALFDS------LTVFEN 97
Query: 200 L-------DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH 252
+ +S + L +G + + + SGG + R+ALARAL + P
Sbjct: 98 VAFPLREHTRLSEEEIREIVLEKLEAVGL-RGAEDLYPAELSGGMKKRVALARALALDPE 156
Query: 253 LLLLDEPTNHLDLDACVWLEEELKTYKRIL----VIISHSQDFLNGVCTNIIHLDKRKL 307
LLL DEPT LD A +++ +++ K+ L ++++H D + I L K+
Sbjct: 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKI 215
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 70.5 bits (173), Expect = 1e-13
Identities = 62/187 (33%), Positives = 91/187 (48%), Gaps = 23/187 (12%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDY-MLQ 489
L+GPNGAGKSTLL +I G L P+ G + + H + R + LH++ L SP Y L
Sbjct: 30 GLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH-PWTR--KDLHKIGSLIESPPLYENLT 86
Query: 490 SFPEVKDR-----------EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA 538
+ +K +E+ I+ TG+++ +Q S G K R+ A
Sbjct: 87 ARENLKVHTTLLGLPDSRIDEVLNIVD-LTNTGKKKA---KQFSLGMKQRLGIAIALLNH 142
Query: 539 PHLLLLDEPTNHLDMETIDALADAINDFEG---GLVLVSHDFRLINQVAEEIWICENGKV 595
P LL+LDEPTN LD I L + I F ++L SH + Q+A+ I I G +
Sbjct: 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVL 202
Query: 596 TKWEGNI 602
++G I
Sbjct: 203 -GYQGKI 208
Score = 65.9 bits (161), Expect = 3e-12
Identities = 60/202 (29%), Positives = 89/202 (44%), Gaps = 27/202 (13%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148
+ N S F + + L + YGLLG NG+GKSTLL ++ P I IF
Sbjct: 2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI-IFD 60
Query: 149 LTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTA 208
D + ++E L E L A E+ + ++ L +
Sbjct: 61 -GHPWTRKDLHKIGSLIES-------PPLYENLTAREN-------LKVHTTLLGLP---- 101
Query: 209 EARAANILH--GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266
++R +L+ L T +KK K FS G + R+ +A AL P LL+LDEPTN LD
Sbjct: 102 DSRIDEVLNIVDLTNTG---KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPI 158
Query: 267 ACVWLEEELKTYKR--ILVIIS 286
L E ++++ I VI+S
Sbjct: 159 GIQELRELIRSFPEQGITVILS 180
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 70.0 bits (172), Expect = 1e-13
Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 18/208 (8%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-K 460
V+NV+ R+ ++ F ++ L+GPNGAGK+T + +I G + P G V
Sbjct: 3 VENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60
Query: 461 NSHLRFARYHQ--HLHEL--LDLDISPLDYMLQSFPEVKD------REEMRKIIGRYGLT 510
L A ++ +L E L + +D L ++K R + + + R L+
Sbjct: 61 GKPLDIAARNRIGYLPEERGLYPKMKVID-QLVYLAQLKGLKKEEARRRIDEWLERLELS 119
Query: 511 GRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG- 569
+ +LS G + +V F P LL+LDEP + LD ++ L D I +
Sbjct: 120 EYANK-RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAG 178
Query: 570 --LVLVSHDFRLINQVAEEIWICENGKV 595
++L +H L+ ++ + + + G+
Sbjct: 179 KTVILSTHQMELVEELCDRVLLLNKGRA 206
Score = 61.5 bits (150), Expect = 1e-10
Identities = 52/230 (22%), Positives = 103/230 (44%), Gaps = 26/230 (11%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDI 146
+++ N + F L D + G +GLLG NG+GK+T + +LG + +PD ++
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG---IILPDSGEV 57
Query: 147 FHLTREMPASDKSALTCVMEVDEER--VRLEKLAEQLVACEDDESQEQLMDIYDRLDDIS 204
+ + + ++ + + EER K+ +QLV +L +
Sbjct: 58 LFDGKPLDIAARNRIG---YLPEERGLYPKMKVIDQLV-------------YLAQLKGLK 101
Query: 205 ADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+ A R L L + E K+ ++ S G + ++ A+ P LL+LDEP + LD
Sbjct: 102 KEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160
Query: 265 LDACVWLEEELKTYKR---ILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
L++ ++ R +++ +H + + +C ++ L+K + YG
Sbjct: 161 PVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 70.7 bits (174), Expect = 1e-13
Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 79/244 (32%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +NV+F Y P + +++ F I ++A+VGP+G+GKST+L L++ S G +
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSF--------------------------PE 493
+ DI + L S P+
Sbjct: 60 IDGQ----------------DIR--EVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPD 101
Query: 494 VKDREEMRK--------------------IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY 533
D EE+ + I+G GL +LS G+K RV A
Sbjct: 102 ATD-EEVIEAAKAAQIHDKIMRFPDGYDTIVGERGL----------KLSGGEKQRVAIAR 150
Query: 534 LAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICE 591
+ P +LLLDE T+ LD T + A+ D G ++++H I A++I + +
Sbjct: 151 AILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLK 209
Query: 592 NGKV 595
+G++
Sbjct: 210 DGRI 213
Score = 39.9 bits (94), Expect = 0.002
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG + R+A+ARA+ P +LLLDE T+ LD
Sbjct: 139 SGGEKQRVAIARAILKNPPILLLDEATSALD 169
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 69.9 bits (172), Expect = 2e-13
Identities = 67/230 (29%), Positives = 100/230 (43%), Gaps = 41/230 (17%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV- 458
I V+N+S Y + +++ I+ +AL+GP+GAGKSTLL + G + P+ G V
Sbjct: 1 IEVENLSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 459 --------RKNSHLRFARYH-----QH-------------LHELLDLDISPLDYMLQSFP 492
K LR R Q L L S + FP
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLG-RRSTWRSLFGLFP 118
Query: 493 EVKDREEMRKIIGRYGLTGR--QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550
+ ++++ + R GL + Q+ QLS GQ+ RV A Q P L+L DEP
Sbjct: 119 K-EEKQRALAALERVGLLDKAYQRA---DQLSGGQQQRVAIARALMQQPKLILADEPVAS 174
Query: 551 LDMET----IDALADAINDFEGGLVLVS-HDFRLINQVAEEIWICENGKV 595
LD + +D L IN EG V+VS H L + A+ I ++G++
Sbjct: 175 LDPASSRQVMDLLKR-INREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223
Score = 60.7 bits (148), Expect = 3e-10
Identities = 65/259 (25%), Positives = 104/259 (40%), Gaps = 69/259 (26%)
Query: 89 KIANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++ N S T+ +G + L+D L +N G L+G +G+GKSTLL L N V P +
Sbjct: 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCL-NGLVE-PTSGSVL 59
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
++ AL + R ++ + +Q ++ +RL +
Sbjct: 60 IDGTDINKLKGKALRQL------RRQIGMIFQQF-------------NLIERLSVL---- 96
Query: 208 AEARAANILHG-LG-----------FTKEMQQ----------------KKTKDFSGGWRM 239
N+L G LG F KE +Q ++ SGG +
Sbjct: 97 -----ENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ 151
Query: 240 RIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRI------LVIIS-HSQDFL 292
R+A+ARAL +P L+L DEP LD + + + KRI VI+S H D
Sbjct: 152 RVAIARALMQQPKLILADEPVASLDPASS---RQVMDLLKRINREEGITVIVSLHQVDLA 208
Query: 293 NGVCTNIIHLDKRKLKYYG 311
I+ L ++ + G
Sbjct: 209 REYADRIVGLKDGRIVFDG 227
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 69.1 bits (169), Expect = 4e-13
Identities = 63/213 (29%), Positives = 95/213 (44%), Gaps = 21/213 (9%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I + N+S R+ NLE + + +AL+GP+G+GKSTLL +I G P G +R
Sbjct: 1 IEIANISKRFGSFQALDDVNLE--VPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58
Query: 460 KNS------HLR-------FARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGR 506
N H R F Y H + +I+ ++ P+ K + + +++
Sbjct: 59 LNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIA-FGLEIRKHPKAKIKARVEELLEL 117
Query: 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF 566
L G P QLS GQ+ RV A P +LLLDEP LD + L +
Sbjct: 118 VQLEGLGDRYP-NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKL 176
Query: 567 EGGL----VLVSHDFRLINQVAEEIWICENGKV 595
+ V V+HD +VA+ I + NGK+
Sbjct: 177 HDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKI 209
Score = 66.4 bits (162), Expect = 3e-12
Identities = 68/243 (27%), Positives = 102/243 (41%), Gaps = 49/243 (20%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++IAN S F + L D LE+ G LLG +GSGKSTLL ++ E P I
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI-RL 59
Query: 148 H---LTREMPASDKS--------ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDI 196
+ TR + A D+ AL + V + +A L
Sbjct: 60 NGQDATR-VHARDRKIGFVFQHYALFKHLTV------RDNIAFGL--------------- 97
Query: 197 YDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLL 256
+ +AR +L + + + SGG R R+ALARAL V+P +LLL
Sbjct: 98 --EIRKHPKAKIKARVEELLELVQLEG-LGDRYPNQLSGGQRQRVALARALAVEPQVLLL 154
Query: 257 DEPTNHLDLDACVWLEEELKTYKRIL--------VIISHSQDFLNGVCTNIIHLDKRKLK 308
DEP LD + +EL+++ R L V ++H Q+ V I+ + K++
Sbjct: 155 DEPFGALDAK----VRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE 210
Query: 309 YYG 311
G
Sbjct: 211 QIG 213
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 71.7 bits (176), Expect = 5e-13
Identities = 72/272 (26%), Positives = 114/272 (41%), Gaps = 53/272 (19%)
Query: 68 LNAEARACTGSLAVHPKSR-DVKIANFSITFH--GCELLQDTMLELNCGRRYGLLGLNGS 124
LN+ + LA P+ R + N + E+L + L++ G G++G +GS
Sbjct: 435 LNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGS 494
Query: 125 GKSTLLAVLGNREVPVPDH----IDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQ 180
GKSTL +L + + P H +D L PA + + V+
Sbjct: 495 GKSTLTKLL--QRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVL--------------- 537
Query: 181 LVACEDDESQEQLM---DIYD--RLDDISADTAEARAANILHG-LGFTKEMQQ------- 227
QE ++ I D L + A A L G F E+ Q
Sbjct: 538 ---------QENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG 588
Query: 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK--TYKRILVII 285
+K + SGG R RIA+ARAL P +L+ DE T+ LD ++ + ++ R ++II
Sbjct: 589 EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIII 648
Query: 286 SHSQDFLNGV--CTNIIHLDKRKLKYYGGNYE 315
+H L+ V C II L+K ++ G + E
Sbjct: 649 AHR---LSTVRACDRIIVLEKGQIAESGRHEE 677
Score = 55.1 bits (133), Expect = 8e-08
Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 34/237 (14%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +N+ FRY+ D P + NL I + +VGP+G+GKSTL L+ TP G V
Sbjct: 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515
Query: 460 KNSH---------LRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLT 510
+ LR + L E + S D + P +I L
Sbjct: 516 VDGVDLAIADPAWLR-RQMGVVLQENVLFSRSIRDNIALCNPGA----PFEHVIHAAKLA 570
Query: 511 GRQQ-VCPIRQ------------LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETID 557
G + + Q LS GQ+ R+ A P +L+ DE T+ LD E+
Sbjct: 571 GAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEA 630
Query: 558 ALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAK 612
+ + + G +++++H + + I + E G++ + G ++E L +
Sbjct: 631 LIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAE-SGR---HEELLALQ 682
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 68.3 bits (168), Expect = 5e-13
Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 39/221 (17%)
Query: 88 VKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV--- 140
+++ N S++F + L D + G GL+G +GSGKSTL + P
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 141 --PDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDES-------QE 191
D D+ L+R + ++R +++ Q+V + S E
Sbjct: 62 IIFDGKDLLKLSRRL----------------RKIRRKEI--QMVFQDPMSSLNPRMTIGE 103
Query: 192 QLMDIYDRLDDISADTAEARAA-NILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVK 250
Q+ + +S A A +L G+G +E+ + + SGG R R+A+ARAL +
Sbjct: 104 QIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALN 163
Query: 251 PHLLLLDEPTNHLDLDACVWLEEELKT----YKRILVIISH 287
P LL+ DEPT+ LD+ + + LK L+ I+H
Sbjct: 164 PKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITH 204
Score = 62.1 bits (152), Expect = 7e-11
Identities = 56/253 (22%), Positives = 94/253 (37%), Gaps = 85/253 (33%)
Query: 399 VIMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
++ V+N+S + G + ++ F I L LVG +G+GKSTL I G L P+ G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 457 MVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRY--------- 507
+ D+ L +RKI +
Sbjct: 61 SI----------------IFDGKDLLKLS------------RRLRKIRRKEIQMVFQDPM 92
Query: 508 -----GLTGRQQVC-PIR----------------------------------QLSDGQKC 527
+T +Q+ P+R +LS GQ+
Sbjct: 93 SSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQ 152
Query: 528 RVVFAY-LAWQAPHLLLLDEPTNHLDM----ETIDALADAINDFEGGLVLVSHDFRLINQ 582
RV A LA P LL+ DEPT+ LD+ + +D L + L+ ++HD ++ +
Sbjct: 153 RVAIARALALN-PKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAK 211
Query: 583 VAEEIWICENGKV 595
+A+ + + GK+
Sbjct: 212 IADRVAVMYAGKI 224
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 69.1 bits (169), Expect = 7e-13
Identities = 61/247 (24%), Positives = 109/247 (44%), Gaps = 33/247 (13%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
++ V+ +++ YSD G + + I A++G NGAGKSTL + G L PS
Sbjct: 2 EDYILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS 60
Query: 456 GMV-RKNSHLRFAR-------------YHQHLHELL------DLDISPLDYMLQSFPEVK 495
G + + ++R + ++L D+ ++ L PE +
Sbjct: 61 GRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKL---PEDE 117
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD--- 552
R+ + + R G+ + P LS GQK RV A + P +L+LDEPT LD
Sbjct: 118 VRKRVDNALKRTGIEHLKDK-PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
Query: 553 -METIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDY---KET 608
E + L + + +++ +HD ++ + +++ + G+V +GN + KE
Sbjct: 177 VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFAEKEM 235
Query: 609 LRAKVLK 615
LR L+
Sbjct: 236 LRKVNLR 242
Score = 54.9 bits (132), Expect = 4e-08
Identities = 61/235 (25%), Positives = 94/235 (40%), Gaps = 34/235 (14%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK 158
G L+ + + G +LG NG+GKSTL L P I L P
Sbjct: 18 GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI----LFDGKP---- 69
Query: 159 SALTCVMEVDEERVRLEKLAEQL-VACEDDESQEQLMDIYDRLDDIS---------ADTA 208
+D R L KL E + + +D ++Q +Y D+S D
Sbjct: 70 --------IDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQ---DVSFGAVNLKLPEDEV 118
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD---- 264
R N L G ++ K T S G + R+A+A L ++P +L+LDEPT LD
Sbjct: 119 RKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177
Query: 265 LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319
+ L E K ++I +H D + C N+ + + ++ G E F +
Sbjct: 178 SEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 67.9 bits (167), Expect = 7e-13
Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 46/207 (22%)
Query: 415 WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV---------------- 458
W +++ F + R+ L+G NGAGKSTLL L+ G P G V
Sbjct: 36 WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGF 95
Query: 459 ------RKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR 512
R+N +L LL L + + E+ + E +G +
Sbjct: 96 NPELTGRENIYLN--------GRLLGLSR---KEIDEKIDEIIEFSE----LGDFIDL-- 138
Query: 513 QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGG 569
P++ S G K R+ FA P +LL+DE D + + +
Sbjct: 139 ----PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKT 194
Query: 570 LVLVSHDFRLINQVAEEIWICENGKVT 596
++LVSHD I ++ + + E GK+
Sbjct: 195 VILVSHDPSSIKRLCDRALVLEKGKIR 221
Score = 47.1 bits (113), Expect = 8e-06
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 195 DIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLL 254
+I +++D+I + +E LG + K +S G + R+A A A ++P +L
Sbjct: 118 EIDEKIDEI-IEFSE---------LG---DFIDLPVKTYSSGMKARLAFAIATALEPDIL 164
Query: 255 LLDEPTNHLDL---DACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
L+DE D + C EL + ++++SH + +C + L+K K+++ G
Sbjct: 165 LIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
Score = 43.3 bits (103), Expect = 1e-04
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG 134
L+D E+ G R GL+G NG+GKSTLL +L
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLA 69
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 67.5 bits (166), Expect = 7e-13
Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 16/174 (9%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN----SHLRFARYHQ 471
++ L F ++ + + GPNGAGK++LL ++ G P G V R YHQ
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQ 74
Query: 472 HLHEL-----LDLDISPLD--YMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDG 524
L L + +++ L+ Q D E + + + + GL G + V P+RQLS G
Sbjct: 75 DLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-PVRQLSAG 133
Query: 525 QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLV-SH 575
Q+ RV A L L +LDEP +D + + L + +GG+V++ +H
Sbjct: 134 QQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
Score = 39.0 bits (92), Expect = 0.003
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL 275
S G + R+ALAR + L +LDEP +D LE L
Sbjct: 131 SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALL 172
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 68.3 bits (167), Expect = 7e-13
Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 27/232 (11%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI- 146
+++ + + + L D L+ G LLG +G+GKS+LL VL E+P ++I
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 147 ---FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI 203
F ++ SDK+ + R + + +Q QE L++ R+ +
Sbjct: 63 GNHFDFSKTP--SDKAIR-------DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGL 113
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKD-----FSGGWRMRIALARALYVKPHLLLLDE 258
S D A ARA +L K ++ K D SGG + R+A+ARAL ++P +LL DE
Sbjct: 114 SKDQALARAEKLL------KRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDE 167
Query: 259 PTNHLDLD---ACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKL 307
PT LD + V + +EL VI++H + + +++++ +
Sbjct: 168 PTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHI 219
Score = 64.9 bits (158), Expect = 1e-11
Identities = 60/204 (29%), Positives = 90/204 (44%), Gaps = 33/204 (16%)
Query: 422 FGIDLDTR----LALVGPNGAGKSTL---LNLI----YGDL-----------TPS---VG 456
F I LD L L+GP+GAGKS+L LNL+ G L TPS +
Sbjct: 19 FDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78
Query: 457 MVRKNSHLRFARYH--QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQ 514
+R+N + F +Y+ HL +L +P + + + K++ R L
Sbjct: 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCR--VLGLSKDQALARAEKLLKRLRLKPYAD 136
Query: 515 VCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEG-GL--V 571
P+ LS GQ+ RV A P +LL DEPT LD E + I + G+ V
Sbjct: 137 RYPL-HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQV 195
Query: 572 LVSHDFRLINQVAEEIWICENGKV 595
+V+H+ + + A + ENG +
Sbjct: 196 IVTHEVEVARKTASRVVYMENGHI 219
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 69.6 bits (171), Expect = 9e-13
Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 35/226 (15%)
Query: 399 VIMVQNVSFRYSDDG---PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
+I ++NVS + G ++ I ++G +GAGKSTLL LI P+
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 456 GMVR---------KNSHLRFARYH-----QHLHEL-----LDLDISPLDYMLQSFPEVKD 496
G V + LR R QH + L + PL+ L P+ +
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLE--LAGVPKAEI 118
Query: 497 REEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMET 555
++ + +++ GL+ + P QLS GQK RV A LA P +LL DE T+ LD ET
Sbjct: 119 KQRVAELLELVGLSDKADRYP-AQLSGGQKQRVAIARALANN-PKILLCDEATSALDPET 176
Query: 556 ----IDALADAINDFEGGL--VLVSHDFRLINQVAEEIWICENGKV 595
++ L D IN E GL VL++H+ ++ ++ + + + + G++
Sbjct: 177 TQSILELLKD-INR-ELGLTIVLITHEMEVVKRICDRVAVLDQGRL 220
Score = 56.1 bits (136), Expect = 2e-08
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 29/174 (16%)
Query: 199 RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDE 258
L + + R A +L +G + + + SGG + R+A+ARAL P +LL DE
Sbjct: 109 ELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALANNPKILLCDE 167
Query: 259 PTNHLDLDACVWLEEELKTYKRIL--------------VIISHSQDFLNGVCTNIIHLDK 304
T+ LD +T + IL V+I+H + + +C + LD+
Sbjct: 168 ATSALD----------PETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQ 217
Query: 305 RKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLAR 358
+L G E F + + +++ E +I + + R G L R
Sbjct: 218 GRLVEEGTVSEVFANPKHAI----TQEFIGETLEIDLPEELLERLESGDGPLLR 267
Score = 38.0 bits (89), Expect = 0.012
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 88 VKIANFSITFHGC-----ELLQDTMLELNCGRRYGLLGLNGSGKSTLL 130
+++ N S TF L D LE+ G +G++G +G+GKSTLL
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLL 49
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 67.7 bits (166), Expect = 1e-12
Identities = 63/202 (31%), Positives = 89/202 (44%), Gaps = 55/202 (27%)
Query: 411 DDGPWIYRNLEFGIDLDT----RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN----- 461
D W+Y +L DL R+A++GP+GAGKSTLLNLI G LTP+ G + N
Sbjct: 5 TDITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHT 64
Query: 462 -------------------SHLRFARYHQH----LHELLDLDISPLDYMLQSFPEVKDRE 498
SHL A Q+ L+ L L+ RE
Sbjct: 65 TTPPSRRPVSMLFQENNLFSHLTVA---QNIGLGLNPGLKLN-------------AAQRE 108
Query: 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLD----M 553
++ I + G+ P QLS GQ+ RV A L + P +LLLDEP + LD
Sbjct: 109 KLHAIARQMGIEDLLARLP-GQLSGGQRQRVALARCLVREQP-ILLLDEPFSALDPALRQ 166
Query: 554 ETIDALADAINDFEGGLVLVSH 575
E + ++ + + L++VSH
Sbjct: 167 EMLTLVSQVCQERQLTLLMVSH 188
Score = 38.8 bits (91), Expect = 0.004
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG R R+ALAR L + +LLLDEP + LD
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALD 161
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 67.2 bits (164), Expect = 1e-12
Identities = 55/165 (33%), Positives = 76/165 (46%), Gaps = 19/165 (11%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-----LRFARYHQHLHELL-DLDISP 483
L L+GPNGAGK+TLL I G + P+ G V+ R Y HE D IS
Sbjct: 9 LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISV 68
Query: 484 LDYMLQSF---------PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYL 534
++ P V D +R + R GLT P+ +LS GQ+ RV+ A
Sbjct: 69 AHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-PVGELSGGQRQRVLVARA 127
Query: 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDFEG---GLVLVSHD 576
P +LLLDEP LDM T + L + + G +++ +HD
Sbjct: 128 LATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172
Score = 49.5 bits (118), Expect = 1e-06
Identities = 50/204 (24%), Positives = 79/204 (38%), Gaps = 21/204 (10%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME 166
L + G GLLG NG+GK+TLL A+LG +P + P + V +
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILG----LIPPAKGTVKVAGASPGKGWRHIGYVPQ 56
Query: 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDR--LDDISADTAEARAANILHGLGFTKE 224
E V + + R + D +A R +
Sbjct: 57 RHEFAWDFPISVAHTVM----SGRTGHIGWLRRPCVADFAAVRDALRRVGLTE------- 105
Query: 225 MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL---DACVWLEEELKTYKRI 281
+ + + SGG R R+ +ARAL +P +LLLDEP LD+ + L EL
Sbjct: 106 LADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 282 LVIISHSQDFLNGVCTNIIHLDKR 305
+++ +H C ++ L+ R
Sbjct: 166 ILMTTHDLAQAMATCDRVVLLNGR 189
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 67.9 bits (166), Expect = 1e-12
Identities = 64/238 (26%), Positives = 103/238 (43%), Gaps = 43/238 (18%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+++ N FHG +L LE+ G ++G +GSGK+TLL + E P I +
Sbjct: 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG 63
Query: 148 HLTREMPASDKSALTCVMEVDEE-------------RVRLEKLAEQLVACEDDESQEQLM 194
+T + S + ++ + R LE + E V + + +E
Sbjct: 64 DITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEE--- 120
Query: 195 DIYDRLDDISADTAEARAANILHGLGFT-KEMQQKKTKDFSGGWRMRIALARALYVKPHL 253
A ARA +L +G KE + SGG + R+A+ARAL ++P +
Sbjct: 121 -------------ATARARELLAKVGLAGKE--TSYPRRLSGGQQQRVAIARALAMRPEV 165
Query: 254 LLLDEPTNHLD-------LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDK 304
+L DEPT+ LD L+ L +E KR +VI++H F V I +D+
Sbjct: 166 ILFDEPTSALDPELVGEVLNTIRQLAQE----KRTMVIVTHEMSFARDVADRAIFMDQ 219
Score = 61.7 bits (150), Expect = 1e-10
Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 43/209 (20%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR--------------KNSHL 464
GIDL+ + +A++GP+G+GK+TLL I P G +R + +
Sbjct: 21 GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80
Query: 465 RFARYHQHLHELL-DLDISPLDYMLQSFPE----VK--DREEM----RKIIGRYGLTGRQ 513
R R QH+ + + ++ P +L++ E VK +EE R+++ + GL G++
Sbjct: 81 RQLR--QHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE 138
Query: 514 QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME-------TIDALADAINDF 566
P R+LS GQ+ RV A P ++L DEPT+ LD E TI LA
Sbjct: 139 TSYP-RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE---- 193
Query: 567 EGGLVLVSHDFRLINQVAEEIWICENGKV 595
+ +V+V+H+ VA+ + G++
Sbjct: 194 KRTMVIVTHEMSFARDVADRAIFMDQGRI 222
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 70.1 bits (172), Expect = 1e-12
Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 33/229 (14%)
Query: 394 KIPPP--VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDL 451
+P P + V+NV+ R + F + LA++GP+G+GKSTL LI G
Sbjct: 309 PLPEPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIW 368
Query: 452 TPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFP--------EVKDREEMRKI 503
P+ G VR L A Q E I L ++ FP + + KI
Sbjct: 369 PPTSGSVR----LDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKI 424
Query: 504 IGRYGLTGRQQVCPIR--------------QLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
I L G ++ +R LS GQ+ R+ A + P L++LDEP +
Sbjct: 425 IEAAKLAGVHELI-LRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNS 483
Query: 550 HLDMETIDALADAINDFE---GGLVLVSHDFRLINQVAEEIWICENGKV 595
+LD E ALA+AI + +V+++H L+ V ++I + ++G++
Sbjct: 484 NLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV-DKILVLQDGRI 531
Score = 57.7 bits (140), Expect = 1e-08
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHSQD 290
SGG R RIALARALY P L++LDEP ++LD + L LK +V+I+H
Sbjct: 456 SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS 515
Query: 291 FLNGV 295
L V
Sbjct: 516 LLGCV 520
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 67.9 bits (166), Expect = 2e-12
Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI-----DIFHLTREMPAS 156
+L + L + G GLLG +G GKSTL +L E P + D++ L R+ +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 157 DKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANIL 216
+ + V + V Q++ E L L + +AR A +L
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIG-------EPL----RHLTSLDESEQKARIAELL 134
Query: 217 HGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
+G E K + SGG RI +ARAL VKP L++LDE ++LD+
Sbjct: 135 DMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183
Score = 47.1 bits (112), Expect = 1e-05
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 28/192 (14%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR----------KNSHLRFARYHQHLHELLDL 479
+ L+G +G GKSTL L+ G P+ G V + F R Q + +
Sbjct: 40 VGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99
Query: 480 DISPLDYMLQSFPE-------VKDREEMRKIIGRYGLTGRQ----QVCPIRQLSDGQKCR 528
++P + Q E + + E+ +I + G + P RQLS GQ R
Sbjct: 100 AVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLP-RQLSGGQLQR 158
Query: 529 VVFAYLAWQAPHLLLLDEPTNHLDM---ETIDALADAINDFEGGL--VLVSHDFRLINQV 583
+ A P L++LDE ++LDM I L + G + ++HD RL+
Sbjct: 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQ-AFGTAYLFITHDLRLVQSF 217
Query: 584 AEEIWICENGKV 595
+ + + + G++
Sbjct: 218 CQRVAVMDKGQI 229
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 69.8 bits (172), Expect = 2e-12
Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 37/204 (18%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR------KNSHLRFARY--- 469
G+ L R AL+G NGAGKSTL+ ++ G P G + S R A
Sbjct: 26 GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85
Query: 470 ---HQHLHELLDLDISP---LDYMLQSFPEVKDREEMRK----IIGRYGLTGRQQVCPIR 519
HQ L + +L ++ L + DR+ MR+ ++ R GL +
Sbjct: 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDT-LVG 144
Query: 520 QLSDGQK-----CRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EG-GLV 571
LS Q+ R L++ A +L+LDEPT L ++ + L D I +G ++
Sbjct: 145 DLSIAQRQMVEIARA----LSFDAR-VLILDEPTAALTVKETERLFDLIRRLKAQGVAII 199
Query: 572 LVSHDFRLINQVAEEIWICENGKV 595
+SH + ++A+ I + +G+V
Sbjct: 200 YISHRLDEVFEIADRITVLRDGRV 223
Score = 58.3 bits (142), Expect = 7e-09
Identities = 48/193 (24%), Positives = 71/193 (36%), Gaps = 40/193 (20%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL-GNREVPVPDHIDI 146
+++ S +F G + L L + G + LLG NG+GKSTL+ +L G V PD +I
Sbjct: 9 LELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSG---VYPPDSGEI 65
Query: 147 FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQL-VACEDDESQE----QLMDIYD--- 198
+ + S A +A QE + + +
Sbjct: 66 LIDGKPVAFSSPRD-----------------ALAAGIATV---HQELSLVPNLSVAENIF 105
Query: 199 -------RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP 251
R I RA +L LG + D S R + +ARAL
Sbjct: 106 LGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL-VGDLSIAQRQMVEIARALSFDA 164
Query: 252 HLLLLDEPTNHLD 264
+L+LDEPT L
Sbjct: 165 RVLILDEPTAALT 177
Score = 39.0 bits (92), Expect = 0.007
Identities = 52/241 (21%), Positives = 91/241 (37%), Gaps = 54/241 (22%)
Query: 393 GKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIY 448
I PV+ V+N+S + R L + G GAG++ L ++
Sbjct: 257 EGIGEPVLEVRNLSGGGKVRD----------VSFTVRAGEILGIAGLVGAGRTELARALF 306
Query: 449 GDLTPSVGMVR------KNSHLRFA-----------RYHQHLHELLDLDISP------LD 485
G S G + + R A R + L +LD+ I+ L
Sbjct: 307 GARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGL--VLDMSIAENITLASLR 364
Query: 486 YMLQSFPEVKDREEM---RKIIGRYGL--TGRQQVCPIRQLSDG--QKCRVVFAYLAWQA 538
+ + R+E + I R + +Q PI LS G QK V A
Sbjct: 365 RFSRRGL-IDRRKERALAERYIRRLRIKTPSPEQ--PIGTLSGGNQQKV--VLARWLATD 419
Query: 539 PHLLLLDEPTNHLDMETIDALADAINDF--EG-GLVLVSHDFRLINQVAEEIWICENGKV 595
P +L+LDEPT +D+ + I + EG ++++S + + +++ I + G++
Sbjct: 420 PKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRI 479
Query: 596 T 596
Sbjct: 480 V 480
Score = 35.9 bits (84), Expect = 0.063
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPT 260
SGG + ++ LAR L P +L+LDEPT
Sbjct: 402 LSGGNQQKVVLARWLATDPKVLILDEPT 429
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 67.3 bits (165), Expect = 2e-12
Identities = 58/195 (29%), Positives = 84/195 (43%), Gaps = 39/195 (20%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVGMVRKN-------SHLRFARYHQHLHELLDLDISPL 484
LVGPNGAGKSTLL + G L P G ++ S AR+ +L + +P
Sbjct: 27 LVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEAWSAAELARHRAYLSQ----QQTPP 81
Query: 485 DYM-----LQ-----SFPEVKDREEMRKIIGRYGLT---GRQQVCPIRQLSDG--QKCRV 529
M L + ++ GL GR + QLS G Q+ R+
Sbjct: 82 FAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR----SVNQLSGGEWQRVRL 137
Query: 530 VFAYL-AWQA--PH--LLLLDEPTNHLDMETIDALADAINDF--EGGLVLVS-HDFRLIN 581
L W P LLLLDEP N LD+ AL +++ +G V++S HD
Sbjct: 138 AAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTL 197
Query: 582 QVAEEIWICENGKVT 596
+ A+ +W+ + GK+
Sbjct: 198 RHADRVWLLKQGKLL 212
Score = 41.1 bits (97), Expect = 0.001
Identities = 57/218 (26%), Positives = 76/218 (34%), Gaps = 92/218 (42%)
Query: 118 LLGLNGSGKSTLLAVL-----GNREV--------------------------PVPDHIDI 146
L+G NG+GKSTLLA + G+ + P + +
Sbjct: 27 LVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86
Query: 147 FH-LTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISA 205
F LT P + L ++AE L L D +L
Sbjct: 87 FQYLTLHQPDK--------TRTEAVASALNEVAEAL----------GLDD---KL----- 120
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGG-W-RMRIALARALYVKPH------LLLLD 257
R+ N L SGG W R+R+A A L V P LLLLD
Sbjct: 121 ----GRSVNQL-----------------SGGEWQRVRLA-AVVLQVWPDINPAGQLLLLD 158
Query: 258 EPTNHLDLDACVWLEEELKTYKR--ILVIISHSQDFLN 293
EP N LD+ L+ L + I V++S S D LN
Sbjct: 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMS-SHD-LN 194
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 66.9 bits (164), Expect = 3e-12
Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 41/227 (18%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI-------YGDL- 451
I ++NVS Y + ++ I +++GPNGAGKSTLL+++ G++
Sbjct: 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 452 --------TPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDR--EEMR 501
TPS + +K S L+ Q H L + L FP + R +E R
Sbjct: 60 IDGLELTSTPSKELAKKLSILK-----QENHINSRLTVRDL-VGFGRFPYSQGRLTKEDR 113
Query: 502 KIIGRY-------GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM- 553
+II L+ R + +LS GQ+ R A + Q +LLDEP N+LDM
Sbjct: 114 RIINEAIEYLHLEDLSDRY----LDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK 169
Query: 554 ---ETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTK 597
+ + L ++ +V+V HD + ++ I +NGKV K
Sbjct: 170 HSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVK 216
Score = 37.7 bits (88), Expect = 0.012
Identities = 49/222 (22%), Positives = 88/222 (39%), Gaps = 43/222 (19%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+ I N S ++ +L D L++ G ++G NG+GKSTLL+++ R + D +I
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLLK-KDSGEIT 59
Query: 148 HLTREMPASDKSALTCVMEV--DEERVRLEKLAEQLVA------------CEDDESQEQL 193
E+ ++ L + + E + LV ED +
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEA 119
Query: 194 MDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHL 253
++ Y L+D+ + + SGG R R +A L
Sbjct: 120 IE-YLHLEDL----------------------SDRYLDELSGGQRQRAFIAMVLAQDTDY 156
Query: 254 LLLDEPTNHLDLDACVWLEEELKT----YKRILVIISHSQDF 291
+LLDEP N+LD+ V + + L+ + +V++ H +F
Sbjct: 157 VLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF 198
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 66.5 bits (163), Expect = 3e-12
Identities = 60/219 (27%), Positives = 92/219 (42%), Gaps = 45/219 (20%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPD 142
+++ N S + G L L++ G + LLG +G GK+TLL ++ E P + D
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 143 HIDIFHLTREMPASDKS--------ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLM 194
DI +L P + AL + V E +A L
Sbjct: 61 GKDITNL----PPHKRPVNTVFQNYALFPHLTV------FENIAFGL------------- 97
Query: 195 DIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLL 254
RL + + R A L + + +K SGG + R+A+ARAL +P +L
Sbjct: 98 ----RLKKLPKAEIKERVAEALDLVQL-EGYANRKPSQLSGGQQQRVAIARALVNEPKVL 152
Query: 255 LLDEPTNHLDLDACVWLEEELKTYKRIL----VIISHSQ 289
LLDEP LDL ++ ELK ++ L V ++H Q
Sbjct: 153 LLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ 191
Score = 54.2 bits (131), Expect = 4e-08
Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 43/180 (23%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I ++NVS Y G + I L+GP+G GK+TLL LI G TP+ G +
Sbjct: 1 IELENVSKFY--GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 460 KNSHLRFARYHQHLHELLDLDIS--PLDYMLQS---FP--------------------EV 494
+ ++ +L P++ + Q+ FP E+
Sbjct: 59 LDGK-----------DITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEI 107
Query: 495 KDR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM 553
K+R E ++ G R+ QLS GQ+ RV A P +LLLDEP LD+
Sbjct: 108 KERVAEALDLVQLEGYANRK----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDL 163
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 64.8 bits (159), Expect = 3e-12
Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 46/182 (25%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-LRFARYHQHLHELL 477
G+ L R AL+G NGAGKSTL+ ++ G P G + + + FA
Sbjct: 18 GVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA---------- 67
Query: 478 DLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
SP R+ R I + QLS G++ V A +
Sbjct: 68 ----SP-------------RDARRAGIAM-----------VYQLSVGERQMVEIARALAR 99
Query: 538 APHLLLLDEPTNHLDMETIDALADAINDF--EG-GLVLVSHDFRLINQVAEEIWICENGK 594
LL+LDEPT L ++ L I +G ++ +SH + ++A+ + + +G+
Sbjct: 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGR 159
Query: 595 VT 596
V
Sbjct: 160 VV 161
Score = 49.3 bits (119), Expect = 6e-07
Identities = 48/206 (23%), Positives = 73/206 (35%), Gaps = 72/206 (34%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL-GNREVPVPDHIDI 146
+++ + F G + L L + G + LLG NG+GKSTL+ +L G + PD +I
Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSG---LYKPDSGEI 57
Query: 147 FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISAD 206
VD + V A
Sbjct: 58 L-------------------VDGKEVSF------------------------------AS 68
Query: 207 TAEARAANI--LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+AR A I ++ L +Q + +ARAL LL+LDEPT L
Sbjct: 69 PRDARRAGIAMVYQLSV--GERQ------------MVEIARALARNARLLILDEPTAALT 114
Query: 265 LDACVWLEEELKTYKR--ILVI-ISH 287
L + ++ + + VI ISH
Sbjct: 115 PAEVERLFKVIRRLRAQGVAVIFISH 140
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 69.1 bits (170), Expect = 3e-12
Identities = 69/255 (27%), Positives = 111/255 (43%), Gaps = 41/255 (16%)
Query: 368 AKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLD 427
A+ +N+ +T++ VTF S + + NVSF Y D + + L I
Sbjct: 311 ARRINE-ITEQ---KPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAG 366
Query: 428 TRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH---------LRFA------RYHQH 472
++AL+G G GKSTLL L+ P G + N LR A R H
Sbjct: 367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLF 426
Query: 473 LHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR-QQVCPI--------RQLSD 523
L D +L + P D E + +++ + GL + + RQLS
Sbjct: 427 SATL-------RDNLLLAAPNASD-EALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSG 478
Query: 524 GQKCRVVFA-YLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRLI 580
G++ R+ A L AP LLLLDEPT LD ET + + + + +++++H +
Sbjct: 479 GEQRRLGIARALLHDAP-LLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGL 537
Query: 581 NQVAEEIWICENGKV 595
Q + I + +NG++
Sbjct: 538 EQF-DRICVMDNGQI 551
Score = 61.8 bits (151), Expect = 6e-10
Identities = 53/196 (27%), Positives = 81/196 (41%), Gaps = 34/196 (17%)
Query: 82 HPKSRDVKIANFSITFHGCEL--LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP 139
+ + N S T+ L+ L++ G + LLG G GKSTLL +L R
Sbjct: 333 AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL-TRAW- 390
Query: 140 VPDHIDIFHLTREMPASDKSALTCVMEVDEERVRL--EKLAEQLVACEDDESQEQLMDIY 197
P +I + + ++AL + V +RV L L + L+ + S E L+++
Sbjct: 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEV- 449
Query: 198 DRLDDISADTAEARAANILHGLGFTKEMQQKKTKD---------FSGGWRMRIALARALY 248
L +G K ++ K + SGG + R+ +ARAL
Sbjct: 450 ------------------LQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALL 491
Query: 249 VKPHLLLLDEPTNHLD 264
LLLLDEPT LD
Sbjct: 492 HDAPLLLLDEPTEGLD 507
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 68.3 bits (168), Expect = 5e-12
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 36/205 (17%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-KNSHLRF-----AR---- 468
+ L + AL+G NGAGKSTL+ +++G P G +R +R A
Sbjct: 22 DVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81
Query: 469 --YHQHLH--------ELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCP- 517
HQH E + L + P L + R ++++ RYGL V P
Sbjct: 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA--RARIKELSERYGLP----VDPD 135
Query: 518 --IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EG-GLVL 572
+ LS G++ RV ++ LL+LDEPT L + D L + + EG ++
Sbjct: 136 AKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIF 195
Query: 573 VSHDFRLINQVAEEIWICENGKVTK 597
++H + + +A+ + + GKV
Sbjct: 196 ITHKLKEVMAIADRVTVLRRGKVVG 220
Score = 43.7 bits (104), Expect = 3e-04
Identities = 45/170 (26%), Positives = 64/170 (37%), Gaps = 55/170 (32%)
Query: 117 GLLGLNGSGKSTLLAVL-GNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLE 175
LLG NG+GKSTL+ +L G + PD +I VD + VR++
Sbjct: 34 ALLGENGAGKSTLMKILFG---LYQPDSGEIR-------------------VDGKEVRIK 71
Query: 176 -----------------KLAEQLVACED-----DESQEQLMDIYDRLDDISADTAEARAA 213
L L E+ + S+ L+D A AR
Sbjct: 72 SPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDR---------RQARARIK 122
Query: 214 NILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
+ G + K D S G + R+ + +ALY LL+LDEPT L
Sbjct: 123 ELSERYGLPVDPD-AKVADLSVGEQQRVEILKALYRGARLLILDEPTAVL 171
Score = 37.9 bits (89), Expect = 0.014
Identities = 51/250 (20%), Positives = 98/250 (39%), Gaps = 42/250 (16%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLT 452
V+ V+++S + + + + R + + G G G+S L+ I G
Sbjct: 255 EVVLEVEDLSVKDRRGVTAVK-----DVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK 309
Query: 453 PSVGMVRKNSHLRFARYHQHLHELLDLDISP---------LDY------MLQSF---PEV 494
P+ G + N R L L P LD +L P
Sbjct: 310 PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFS 369
Query: 495 K----DREEMRK----IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546
+ DR +RK +I + + P R LS G + +++ A + P LL+ +
Sbjct: 370 RGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQ 429
Query: 547 PTNHLDMETIDALADAINDF--EG-GLVLVSHDFRLINQVAEEIWICENGKVTKWEGNIL 603
PT LD+ I+ + + + + G ++L+S D I ++++ I + G++ I+
Sbjct: 430 PTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG----IV 485
Query: 604 DYKETLRAKV 613
+E R ++
Sbjct: 486 PPEEATREEI 495
Score = 29.4 bits (67), Expect = 6.0
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 229 KTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL------ 282
+ SGG + ++ LAR L +P LL+ +PT LD+ A ++R+L
Sbjct: 400 PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGA------IEFIHERLLELRDAG 453
Query: 283 ---VIISHSQDFLNGVCTNI 299
++IS D + + I
Sbjct: 454 KAVLLISEDLDEILELSDRI 473
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 64.9 bits (159), Expect = 5e-12
Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 32/200 (16%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI-------------YGDLTPSVGMVRKNS 462
I +L I+ A++G +G+GKSTLLN+I G TP + + +
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 463 HLR------FARY----HQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR 512
R F + ++ + E LDL L Y + + + RE+ ++ + + GL +
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDL---GLKY--KKLSKKEKREKKKEALEKVGLNLK 127
Query: 513 QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALAD---AINDFEGG 569
+ I +LS G++ RV A + P L+L DEPT LD + D + D +ND
Sbjct: 128 LKQ-KIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKT 186
Query: 570 LVLVSHDFRLINQVAEEIWI 589
+++V+HD + Q I +
Sbjct: 187 IIIVTHDPEVAKQADRVIEL 206
Score = 63.0 bits (154), Expect = 3e-11
Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 16/205 (7%)
Query: 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHL 149
+ N S F +L D L + G+ Y ++G +GSGKSTLL ++G E + +
Sbjct: 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQ 60
Query: 150 TREMPASDKSALTCVMEVDEERVRLEKLAE--QLVACEDDESQEQLMDIYDRLDDISADT 207
S K+ + R EKL Q A ++E+ E+ +D+ + +S
Sbjct: 61 ETPPLNSKKA----------SKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKE 110
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL-- 265
+ L +G + ++K + SGG + R+ALARA+ P L+L DEPT LD
Sbjct: 111 KREKKKEALEKVGLNLK-LKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKN 169
Query: 266 -DACVWLEEELKTYKRILVIISHSQ 289
D + L EL + ++I++H
Sbjct: 170 RDEVLDLLLELNDEGKTIIIVTHDP 194
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 65.9 bits (161), Expect = 6e-12
Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 24/197 (12%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
++ V ++S Y ++ I + ++GP+G GK+TLLNLI G +TPS G
Sbjct: 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61
Query: 458 VRKN-------SHLRFARYHQH-LHELLDLDISPLDYMLQ--SFPEVKDREEMRKIIGRY 507
++ N R + L L++ I + + LQ + + RE +++
Sbjct: 62 IQLNGRRIEGPGAERGVVFQNEALLPWLNV-IDNVAFGLQLRGIEKAQRREIAHQMLALV 120
Query: 508 GL--TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD------METIDAL 559
GL + I QLS G + RV A P LLLLDEP LD M+ + L
Sbjct: 121 GLEGAEHKY---IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQEL--L 175
Query: 560 ADAINDFEGGLVLVSHD 576
D + ++L++HD
Sbjct: 176 LDLWQETGKQVLLITHD 192
Score = 59.8 bits (145), Expect = 7e-10
Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 90 IANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+++ S+++ G L+D L + G +LG +G GK+TLL ++ P I +
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLN 65
Query: 148 HLTREMPASD------KSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD 201
E P ++ AL + V ++ +A L +L
Sbjct: 66 GRRIEGPGAERGVVFQNEALLPWLNV------IDNVAFGL-----------------QLR 102
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTN 261
I A +L +G + + K SGG R R+ +ARAL V+P LLLLDEP
Sbjct: 103 GIEKAQRREIAHQMLALVGL-EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFG 161
Query: 262 HLD 264
LD
Sbjct: 162 ALD 164
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 65.9 bits (161), Expect = 7e-12
Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 34/244 (13%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
++ +++ + Y DG + + F + +AL+GPNGAGKSTL G L P+ G V
Sbjct: 1 ILETRDLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 459 -----------------RKNSHLRFARYHQHLHE---LLDLDISPLDYMLQSFPEVKDRE 498
RK + F L D+ PL+ L S EV+ R
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGL-SKEEVEKR- 117
Query: 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD---MET 555
+++ + G+ G + P LS GQK RV A + P +++LDEPT+ LD
Sbjct: 118 -VKEALKAVGMEGFENKPP-HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
Query: 556 IDALADAINDFEGGLVLVS-HDFRLINQVAEEIWICENGKVTKWEG---NILDYKETLRA 611
I L +N EG +++S HD L+ A+++++ +GK+ K EG + ET+R
Sbjct: 176 IMKLLYDLNK-EGITIIISTHDVDLVPVYADKVYVMSDGKIIK-EGTPKEVFSDIETIRK 233
Query: 612 KVLK 615
L+
Sbjct: 234 ANLR 237
Score = 42.8 bits (101), Expect = 3e-04
Identities = 49/183 (26%), Positives = 70/183 (38%), Gaps = 44/183 (24%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK 158
G E L+ + G LLG NG+GKSTL L + P ++ + K
Sbjct: 14 GTEALKGINFKAEKGEMVALLGPNGAGKSTLF--LHFNGILKPTSGEVLIKGEPIKYDKK 71
Query: 159 SALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHG 218
S L V +V D D + A T E A
Sbjct: 72 SLLEVRKTVG------------IVFQNPD-------------DQLFAPTVEEDVAFGPLN 106
Query: 219 LGFTKEMQQKKTKD-----------------FSGGWRMRIALARALYVKPHLLLLDEPTN 261
LG +KE +K+ K+ SGG + R+A+A L +KP +++LDEPT+
Sbjct: 107 LGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTS 166
Query: 262 HLD 264
LD
Sbjct: 167 GLD 169
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 65.3 bits (160), Expect = 8e-12
Identities = 62/235 (26%), Positives = 97/235 (41%), Gaps = 59/235 (25%)
Query: 400 IMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI---YGDLTPSV 455
I +NVSFRY S I + L I +ALVG +G GKST+++L+ Y P+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTS 57
Query: 456 GMVR-KNSHLRFARYHQHLHELLDL-----------DISPLDYMLQSFPEVKDREEMRKI 503
G + +R +L L D + + + P+ D E
Sbjct: 58 GEILLDGVDIRD----LNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAA 113
Query: 504 -------------------IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544
+G G QLS GQK R+ A + P +LLL
Sbjct: 114 KKANIHDFIMSLPDGYDTLVGERGS----------QLSGGQKQRIAIARALLRNPKILLL 163
Query: 545 DEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRL--INQVAEEIWICENGKV 595
DE T+ LD E+ + +A++ G ++++H RL I + A+ I + +NG+V
Sbjct: 164 DEATSALDAESEKLVQEALDRAMKGRTTIVIAH--RLSTI-RNADLIAVLQNGQV 215
Score = 56.4 bits (137), Expect = 7e-09
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 47/183 (25%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
+L+ L + G+ L+G +G GKST++++L P I
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI---------------- 60
Query: 161 LTCVMEVDEERVR---LEKLAEQ--LVACEDDESQE-QLMDI-------YDRLDDISADT 207
+D +R L L Q LV SQE L D Y + D +
Sbjct: 61 -----LLDGVDIRDLNLRWLRSQIGLV------SQEPVLFDGTIAENIRYGKPDATDEEV 109
Query: 208 AEA-RAANI---LHGL--GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTN 261
EA + ANI + L G+ + ++ ++ SGG + RIA+ARAL P +LLLDE T+
Sbjct: 110 EEAAKKANIHDFIMSLPDGYDTLVGERGSQ-LSGGQKQRIAIARALLRNPKILLLDEATS 168
Query: 262 HLD 264
LD
Sbjct: 169 ALD 171
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 64.7 bits (158), Expect = 8e-12
Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 25/190 (13%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF-HLTREMPASDKSALTCVME 166
L + G ++G +GSGKSTLL +LG + P + ++ +++++ L
Sbjct: 26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL----- 80
Query: 167 VDEERVRLEKLA-----EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGF 221
R +KL L+ D + E + + + S A+ RA +L +G
Sbjct: 81 ------RNKKLGFIYQFHHLLP--DFTALENVA-MPLLIGKKSVKEAKERAYEMLEKVGL 131
Query: 222 TKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD---LDACVWLEEELKTY 278
+ + + SGG R R+A+ARAL +P L+L DEPT +LD L EL
Sbjct: 132 EHRIN-HRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE 190
Query: 279 KRI-LVIISH 287
++++H
Sbjct: 191 LNTSFLVVTH 200
Score = 62.0 bits (151), Expect = 7e-11
Identities = 57/210 (27%), Positives = 90/210 (42%), Gaps = 33/210 (15%)
Query: 399 VIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
++ +N+ RY + + + + I +A+VG +G+GKSTLL+L+ G P+ G
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 457 MVR-----------------KNSHLRFARYHQHLHELLDLDI-----SPLDYMLQSFPEV 494
V +N L F Y H H L D PL +S E
Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFI-YQFH-HLLPDFTALENVAMPLLIGKKSVKEA 118
Query: 495 KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
K+R +++ + GL R P +LS G++ RV A P L+L DEPT +LD
Sbjct: 119 KERAY--EMLEKVGLEHRINHRP-SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNN 175
Query: 555 TIDALADAI----NDFEGGLVLVSHDFRLI 580
+ D + + ++V+HD L
Sbjct: 176 NAKIIFDLMLELNRELNTSFLVVTHDLELA 205
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 66.6 bits (163), Expect = 9e-12
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 45/213 (21%)
Query: 417 YRNLEFGIDLDTRL------ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYH 470
R F +D + L AL GP+G+GK++L+N+I G P G + N +
Sbjct: 8 QRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV------ 61
Query: 471 QHLHELLD----LDISP----LDYMLQS---FPEVK------------DREEMRKIIGRY 507
L+D + + P + Y+ Q FP R + +++
Sbjct: 62 -----LVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALL 116
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM----ETIDALADAI 563
G+ P LS G+K RV AP LLL+DEP LD+ E + L
Sbjct: 117 GIEHLLDRYPGT-LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLR 175
Query: 564 NDFEGGLVLVSHDFRLINQVAEEIWICENGKVT 596
++ ++ VSH + ++A+ + + ENGKV
Sbjct: 176 DEINIPILYVSHSLDEVLRLADRVVVLENGKVK 208
Score = 49.3 bits (118), Expect = 4e-06
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY-KRI-------LV 283
SGG + R+A+ RAL P LLL+DEP LDL + E+ Y +R+ ++
Sbjct: 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR----KREILPYLERLRDEINIPIL 183
Query: 284 IISHSQDFLNGVCTNIIHLDKRKLKYYGG 312
+SHS D + + ++ L+ K+K G
Sbjct: 184 YVSHSLDEVLRLADRVVVLENGKVKASGP 212
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 66.1 bits (162), Expect = 1e-11
Identities = 56/216 (25%), Positives = 87/216 (40%), Gaps = 54/216 (25%)
Query: 395 IPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS 454
+P P + ++NVS + ++ I + L+GP+G GK+TLL +I G PS
Sbjct: 1 MPKPALEIRNVSKSF--GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS 58
Query: 455 VGMVRKN----SHLRFARYHQHLHELLDLDISPLDYMLQS---FP--------------- 492
G + + + + + P+ + QS FP
Sbjct: 59 SGEILLDGEDITDVPPEK-------------RPIGMVFQSYALFPHMTVEENVAFGLKVR 105
Query: 493 ------EVKDR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLL 544
E+K R EE +++G G R+ QLS GQ+ RV A L P +LLL
Sbjct: 106 KKLKKAEIKARVEEALELVGLEGFADRK----PHQLSGGQQQRVALARALV-PEPKVLLL 160
Query: 545 DEPTNHLDM----ETIDALADAINDFEGGLVLVSHD 576
DEP + LD + L + + V V+HD
Sbjct: 161 DEPLSALDAKLREQMRKELKELQRELGITFVYVTHD 196
Score = 60.8 bits (148), Expect = 7e-10
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+ +AR L +G + +K SGG + R+ALARAL +P +LLLDEP +
Sbjct: 108 LKKAEIKARVEEALELVGL-EGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSA 166
Query: 263 LDLDACVWLEEELKTYKRIL----VIISHSQD 290
LD + +ELK +R L V ++H Q+
Sbjct: 167 LDAKLREQMRKELKELQRELGITFVYVTHDQE 198
Score = 37.6 bits (88), Expect = 0.016
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL 130
++I N S +F + D L++ G LLG +G GK+TLL
Sbjct: 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLL 48
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 66.4 bits (162), Expect = 1e-11
Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 25/182 (13%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPD 142
++I N + +F G + D L + G + LLG +G GKSTLL +L E P + D
Sbjct: 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLD 79
Query: 143 HIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDD 202
+D+ H +P R + Q A + EQ + + D
Sbjct: 80 GVDLSH----VPPYQ---------------RPINMMFQSYALFPHMTVEQNIAFGLKQDK 120
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+ +R +L GL +E ++K SGG R R+ALAR+L +P LLLLDEP
Sbjct: 121 LPKAEIASRVNEML-GLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179
Query: 263 LD 264
LD
Sbjct: 180 LD 181
Score = 60.6 bits (147), Expect = 8e-10
Identities = 63/241 (26%), Positives = 95/241 (39%), Gaps = 59/241 (24%)
Query: 390 PSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG 449
K P++ ++N++ + DG ++ I AL+G +G GKSTLL ++ G
Sbjct: 10 AKTRKALTPLLEIRNLTKSF--DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAG 67
Query: 450 DLTPSVGMVRKNSHLRFARYHQHLHELLD-LDIS-------PLDYMLQS---FP------ 492
P+ G + +LD +D+S P++ M QS FP
Sbjct: 68 FEQPTAGQI-----------------MLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQ 110
Query: 493 --------------EVKDR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
E+ R EM ++ R+ QLS GQ+ RV A +
Sbjct: 111 NIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP----HQLSGGQRQRVALARSLAK 166
Query: 538 APHLLLLDEPTNHLDMETIDAL----ADAINDFEGGLVLVSHDFRLINQVAEEIWICENG 593
P LLLLDEP LD + D + D + V+V+HD +A I I G
Sbjct: 167 RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRG 226
Query: 594 K 594
K
Sbjct: 227 K 227
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 65.0 bits (159), Expect = 1e-11
Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 33/229 (14%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
+I V+N+S Y +++ I+ +A++GP+GAGKSTLL + G + P+ G
Sbjct: 2 MMIEVKNLSKTYPGGHQ-ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 458 V---------RKNSHLRFAR-----YHQHLHELLDLDI------SPLDYM--LQSFPEVK 495
+ K LR R Q + + L + L Y +S +
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120
Query: 496 DREEMRKIIG---RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
+E+ + + R G+ + LS GQ+ RV A Q P ++L DEP LD
Sbjct: 121 SKEDKAQALDALERVGI-LDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179
Query: 553 MET----IDALADAINDFEGGLVLVS-HDFRLINQVAEEIWICENGKVT 596
E+ +D L D IN +G V+V+ H L + A+ I + G++
Sbjct: 180 PESAKKVMDILKD-INQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV 227
Score = 60.0 bits (146), Expect = 5e-10
Identities = 59/234 (25%), Positives = 95/234 (40%), Gaps = 48/234 (20%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L+D LE+N G ++G +G+GKSTLL L N V P +I K
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSL-NGLVD-PTSGEI-LFNGVQITKLKGK-- 74
Query: 163 CVMEVDEERVRLEKLAEQ--LVACEDDESQEQLMDIYD-----RLDDIS----------- 204
E+ + R + + +Q LV + + + RL S
Sbjct: 75 ---ELRKLRRDIGMIFQQFNLV---------PRLSVLENVLLGRLGYTSTWRSLFGLFSK 122
Query: 205 ADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
D A+A A L +G + Q+ SGG + R+A+ARAL +P ++L DEP LD
Sbjct: 123 EDKAQALDA--LERVGILDKAYQR-ASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179
Query: 265 LDACVWLEEELKTYKRI-------LVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
++ ++ + K I +++ H D II L ++ + G
Sbjct: 180 PESA---KKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 65.5 bits (160), Expect = 2e-11
Identities = 55/212 (25%), Positives = 88/212 (41%), Gaps = 47/212 (22%)
Query: 421 EFGIDLDTRL------ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLH 474
+F +D D L A+ G +G+GK+TL+ LI G P G + N F
Sbjct: 11 DFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKG--- 67
Query: 475 ELLDLDISP----LDYMLQS---FPEVKDREEMR----------------KIIGRYG--- 508
+ + P + Y+ Q FP + R +R ++I G
Sbjct: 68 ----IFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGH 123
Query: 509 LTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM----ETIDALADAIN 564
L GR +LS G+K RV +P LLL+DEP LD E + L
Sbjct: 124 LLGR----LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHA 179
Query: 565 DFEGGLVLVSHDFRLINQVAEEIWICENGKVT 596
+F ++ VSH + + ++A+ + + E+G+V
Sbjct: 180 EFGIPILYVSHSLQEVLRLADRVVVLEDGRVA 211
Score = 47.0 bits (112), Expect = 2e-05
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL---- 282
+ SGG + R+A+ RAL P LLL+DEP LD + E+ Y L
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDP----RKYEILPYLERLHAEF 181
Query: 283 ----VIISHSQD 290
+ +SHS
Sbjct: 182 GIPILYVSHSLQ 193
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 64.1 bits (157), Expect = 2e-11
Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 44/225 (19%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL-GNREVPVPDHIDIFHLTREMPASD 157
E+L+ L + G + ++G NGSGKSTL + G+ + V + +F D
Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF---------D 66
Query: 158 KSALTCVMEVDEERVRLE--------------KLAEQLVACEDDESQEQ--LMDIYDRLD 201
+ + DE R R ++ L A + + L + L
Sbjct: 67 GEDIL-ELSPDE-RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELK 124
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTKD-FSGGWRMRIALARALYVKPHLLLLDEPT 260
+ + LG +E ++ + FSGG + R + + L ++P L +LDEP
Sbjct: 125 EKAEL------------LGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPD 172
Query: 261 NHLDLDACVWLEEELKTYK---RILVIISHSQDFLNGVCTNIIHL 302
+ LD+DA + E + + R ++II+H Q L+ + + +H+
Sbjct: 173 SGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217
Score = 37.6 bits (88), Expect = 0.012
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLVSHDF 577
S G+K R L P L +LDEP + LD++ + +A+ IN G+++++H
Sbjct: 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ 204
Query: 578 RLINQV 583
RL++ +
Sbjct: 205 RLLDYI 210
Score = 37.2 bits (87), Expect = 0.018
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 431 ALVGPNGAGKSTLLNLIYGD 450
A++GPNG+GKSTL I G
Sbjct: 34 AIMGPNGSGKSTLAYTIMGH 53
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 63.2 bits (154), Expect = 3e-11
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 97 FHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPAS 156
+ E ++ + G +GLLG NG+GK+T + +L L + P S
Sbjct: 10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT-------------LLK--PTS 54
Query: 157 DK---SALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAA 213
+ + V E E R R+ + Q ++ +D+ + + + I+ RL + R
Sbjct: 55 GRATVAGHDVVREPREVRRRI-GIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERID 113
Query: 214 NILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+L +G E + K +SGG R R+ +AR+L +P +L LDEPT LD
Sbjct: 114 ELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLD 163
Score = 43.1 bits (102), Expect = 1e-04
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 34/220 (15%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I V+N+ +Y R + F + L+GPNGAGK+T + ++ L P+ G
Sbjct: 1 IEVENLVKKY--GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 460 KNSH--LRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGR-YGLTGRQQVC 516
H +R R + ++ D+S +D E+ E + I R YG+ G ++
Sbjct: 59 VAGHDVVREPREVRRRIGIVFQDLS-VD------DELTGWENL-YIHARLYGVPGAERRE 110
Query: 517 PIRQL-----------------SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559
I +L S G + R+ A P +L LDEPT LD +T +
Sbjct: 111 RIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV 170
Query: 560 ADAIN----DFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
+ I +F ++L +H Q+ + + I ++G++
Sbjct: 171 WEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRI 210
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 65.9 bits (161), Expect = 3e-11
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKST----LLAVLGNREVPVPDHIDIFHLTREMPASDK 158
+++ L G GL+G +GSGKST LL ++ ++ D + +L R +
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVR 361
Query: 159 SALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHG 218
+ V + + Q++ E L L SA E + ++
Sbjct: 362 HRIQVVFQDPNSSLNPRLNVLQIIE-------EGLRVHQPTL---SAAQREQQVIAVMEE 411
Query: 219 LGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+G E + + +FSGG R RIA+ARAL +KP L++LDEPT+ LD
Sbjct: 412 VGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
Score = 48.9 bits (117), Expect = 6e-06
Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 54/242 (22%)
Query: 398 PVIMVQNVS--FRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKS-TLLNLIYGDLTPS 454
P++ ++N+S FR + ++ I+ LALVG +G+GKS T L+++ L PS
Sbjct: 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILR--LLPS 61
Query: 455 VGMVRKNSHLRFARYHQHLHELLDLD----------------------ISPLDYMLQSFP 492
+V + +RF H LL ++PL + +
Sbjct: 62 PPVVYPSGDIRF-----HGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLY 116
Query: 493 EV----------KDREEMRKIIGRYGLTGRQQVCPIR----QLSDGQKCRVVFAYLAWQA 538
EV R E+ + R G+ RQ + QLS G++ RV+ A
Sbjct: 117 EVLSLHRGMRREAARGEILNCLDRVGI--RQAAKRLTDYPHQLSGGERQRVMIAMALLTR 174
Query: 539 PHLLLLDEPTNHLDMETIDA-----LADAINDFEGGLVLVSHDFRLINQVAEEIWICENG 593
P LL+ DEPT LD+ ++ A L + + GL+ ++H+ ++ ++A+ + + +NG
Sbjct: 175 PELLIADEPTTALDV-SVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233
Query: 594 KV 595
+
Sbjct: 234 RC 235
Score = 46.6 bits (111), Expect = 3e-05
Identities = 57/197 (28%), Positives = 79/197 (40%), Gaps = 38/197 (19%)
Query: 90 IANFSITF-HGCELLQ---DTMLELNCGRRYGLLGLNGSGKS-TLLAVLGNREVPVPDHI 144
I N S+ F + D L++ G L+G +GSGKS T L++L R +P P +
Sbjct: 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL--RLLPSPPVV 65
Query: 145 ----DIFHLTREMPASDKSALTCV------MEVDEERVRL------EK-LAEQLVACEDD 187
DI + + + L V M E V L EK L E L
Sbjct: 66 YPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGM 125
Query: 188 ESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247
+ +I + LD + A R + H L SGG R R+ +A AL
Sbjct: 126 RREAARGEILNCLDRVGIRQAAKRLTDYPHQL--------------SGGERQRVMIAMAL 171
Query: 248 YVKPHLLLLDEPTNHLD 264
+P LL+ DEPT LD
Sbjct: 172 LTRPELLIADEPTTALD 188
Score = 33.1 bits (76), Expect = 0.52
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD---METIDALADAI-NDFEGGLVLVSH 575
+ S GQ+ R+ A P L++LDEPT+ LD I AL ++ + + +SH
Sbjct: 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISH 484
Query: 576 DFRLINQVAEEIWICENGKV 595
D ++ + ++ + G+V
Sbjct: 485 DLHVVRALCHQVIVLRQGEV 504
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 61.8 bits (151), Expect = 3e-11
Identities = 47/184 (25%), Positives = 73/184 (39%), Gaps = 46/184 (25%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP----SV 455
I ++N+S + DG + ++L F I RL + GP+G GKS+L + L P +
Sbjct: 1 IELENLSL-ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRAL-AGLWPWGSGRI 58
Query: 456 GMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQS--FPEVKDREEMRKIIGRYGLTGRQ 513
GM L ++ Q P T R+
Sbjct: 59 GMPEGEDLL---------------------FLPQRPYLPLG---------------TLRE 82
Query: 514 QVC-P-IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLV 571
Q+ P LS G++ R+ FA L P + LDE T+ LD E+ D L + + ++
Sbjct: 83 QLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVI 142
Query: 572 LVSH 575
V H
Sbjct: 143 SVGH 146
Score = 49.1 bits (118), Expect = 8e-07
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFL 292
SGG + R+A AR L KP + LDE T+ LD ++ L + LK ++ + H L
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPS-L 150
Query: 293 NGVCTNIIHLDK 304
++ LD
Sbjct: 151 WKFHDRVLDLDG 162
Score = 29.4 bits (67), Expect = 3.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG 134
G LL+D E+ G R + G +G+GKS+L L
Sbjct: 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALA 48
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 64.1 bits (156), Expect = 4e-11
Identities = 68/247 (27%), Positives = 108/247 (43%), Gaps = 33/247 (13%)
Query: 400 IMVQNVSFRYSDDGPWIYR---NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
I +NV + YS P + N+ F ++ + +ALVG G+GKSTL+ L PS G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 457 MV-------------------RKNSHLRFARYHQHLHE---LLDLDISPLDYMLQSFPEV 494
+ RK L F L E L D++ P ++ F E
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSED 119
Query: 495 KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
+ +E+ K + + GL+ +LS GQ RV A + P +L LDEP LD E
Sbjct: 120 EAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179
Query: 555 TIDALADAINDFEGG---LVLVSHDFRLINQVAEEIWICENGKVTKWEG--NILDYKETL 609
+ D++ ++LV+H+ + + A+++ + E+GK+ K I KE L
Sbjct: 180 GRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKEWL 239
Query: 610 RAKVLKE 616
+ L E
Sbjct: 240 KKHYLDE 246
Score = 49.1 bits (117), Expect = 3e-06
Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 32/219 (14%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI--FHLTREMPASDKSA 160
L + EL G L+G GSGKSTL+ P I I +H+T E +K+
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPE--TGNKN- 79
Query: 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI---------SADTAEAR 211
L+KL ++ V+ + QL + L D+ S D A+ +
Sbjct: 80 -------------LKKLRKK-VSLVFQFPEAQLFE-NTVLKDVEFGPKNFGFSEDEAKEK 124
Query: 212 AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWL 271
A L +G ++++ K + SGG R+A+A + +P +L LDEP LD + +
Sbjct: 125 ALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEM 184
Query: 272 EEELKTYKR---ILVIISHSQDFLNGVCTNIIHLDKRKL 307
+ K Y++ +++++H+ D + +++ L+ KL
Sbjct: 185 MQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 62.7 bits (153), Expect = 5e-11
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 26/218 (11%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
++L D LE+N G L G +GSGK+TLL ++G + + +E+ + +
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVL--GQELYGASE-- 74
Query: 161 LTCVMEVDEERVRLEKL------AEQLVACEDDESQEQLMDIYDRLDDISADTAEARAAN 214
+E V+L + A L+ Q+ + ++S A RA
Sbjct: 75 --------KELVQLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARA 124
Query: 215 ILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD----LDACVW 270
+L +G + + SGG + R+A+ARAL +P L+L DEPT LD D
Sbjct: 125 MLEAVGLGDHLD-YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVEL 183
Query: 271 LEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLK 308
+++ + ++I++H L+ V I+H++ KL
Sbjct: 184 MQKLAREQGCTILIVTHDNRILD-VADRIVHMEDGKLL 220
Score = 56.5 bits (137), Expect = 5e-09
Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 50/233 (21%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLI------- 447
VI ++N++ Y + + + F I+L+ + L GP+G+GK+TLL LI
Sbjct: 1 VISIRNLNHYYGHGS--LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ 58
Query: 448 YGDLT-----------PSVGMVRKN------SH--LRFARYHQHLHELLDL--DISPLDY 486
G L + +R+N +H L F Q++ L+L ++S +
Sbjct: 59 EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQE- 117
Query: 487 MLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546
RE R ++ GL P LS GQK RV A P L+L DE
Sbjct: 118 ---------ARERARAMLEAVGLGDHLDYYP-HNLSGGQKQRVAIARALVHRPKLVLADE 167
Query: 547 PTNHLDMETIDALADAINDF--EGG--LVLVSHDFRLINQVAEEIWICENGKV 595
PT LD ++ + + + E G +++V+HD R+++ VA+ I E+GK+
Sbjct: 168 PTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILD-VADRIVHMEDGKL 219
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 62.9 bits (153), Expect = 5e-11
Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 30/220 (13%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I ++V FRY DGP I N+ I + +VG +G+GKSTL LI P G V
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 460 KNSH---------LRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLT 510
+ H LR + L E + + S D + + P + M ++I L
Sbjct: 61 VDGHDLALADPAWLR-RQVGVVLQENVLFNRSIRDNIALADPGM----SMERVIEAAKLA 115
Query: 511 GRQQ-VCPIRQ------------LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETID 557
G + + + LS GQ+ R+ A P +L+ DE T+ LD E+
Sbjct: 116 GAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH 175
Query: 558 ALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKV 595
A+ ++D G +++++H + + A+ I + E G++
Sbjct: 176 AIMRNMHDICAGRTVIIIAHRLSTV-KNADRIIVMEKGRI 214
Score = 50.6 bits (121), Expect = 6e-07
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 17/194 (8%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH--IDIFHLTREMPAS 156
G +L + L + G G++G +GSGKSTL ++ VP +D L PA
Sbjct: 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAW 73
Query: 157 DKSALTCVMEVDEERVRLEK-LAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANI 215
+ + V++ E V + + + + + S E++++ +A A A
Sbjct: 74 LRRQVGVVLQ---ENVLFNRSIRDNIALADPGMSMERVIE--------AAKLAGAHDFIS 122
Query: 216 LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL 275
G+ + ++ SGG R RIA+ARAL P +L+ DE T+ LD ++ + +
Sbjct: 123 ELPEGY-DTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM 181
Query: 276 KTY--KRILVIISH 287
R ++II+H
Sbjct: 182 HDICAGRTVIIIAH 195
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 62.9 bits (153), Expect = 5e-11
Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 25/206 (12%)
Query: 398 PVIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
++ N+ RY + + N+ F I +A+VG +G+GKSTLL+L+ G TP+
Sbjct: 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS 63
Query: 456 GMV-----------------RKNSHLRFA-RYHQHLHELLDLDISPLDYMLQSFPEVKDR 497
G V +N L F ++H L + L+ + ++ +
Sbjct: 64 GDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN 123
Query: 498 EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETID 557
+++ GL R P +LS G++ RV A P L+L DEPT +LD D
Sbjct: 124 SRALEMLAAVGLEHRANHRP-SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182
Query: 558 A---LADAINDFEG-GLVLVSHDFRL 579
+ L +N +G ++V+HD +L
Sbjct: 183 SIFQLLGELNRLQGTAFLVVTHDLQL 208
Score = 58.7 bits (142), Expect = 1e-09
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 31/176 (17%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF--HLTREMPASDK 158
++L + + G ++G +GSGKSTLL +LG + P + IF ++ ++ K
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV-IFNGQPMSKLSSAAK 81
Query: 159 SALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDIS---------ADTAE 209
+ L R + Q L+ + L++++
Sbjct: 82 AEL---------RNQKLGFIYQF---------HHLLPDFTALENVAMPLLIGKKKPAEIN 123
Query: 210 ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
+RA +L +G + + + SGG R R+A+ARAL P L+L DEPT +LD
Sbjct: 124 SRALEMLAAVGLEHRANHRPS-ELSGGERQRVAIARALVNNPRLVLADEPTGNLDA 178
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 62.2 bits (152), Expect = 5e-11
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 26/176 (14%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH-LRFARYHQHLH 474
++ L F + L L GPNG+GK+TLL LI G L P+ G ++ + + + H
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACH 76
Query: 475 ELLDLDISPLDYM---------LQSFPEVKDREEMR-----KIIGRYGLTGRQQVCPIRQ 520
L + M L+ + EE+ + +G L P
Sbjct: 77 YL-----GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL----PFGY 127
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVS 574
LS GQK RV A L + +LDEPT LD + A+ I +GG+V+ +
Sbjct: 128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAA 183
Score = 49.9 bits (120), Expect = 7e-07
Identities = 42/185 (22%), Positives = 63/185 (34%), Gaps = 45/185 (24%)
Query: 118 LLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKL 177
L G NGSGK+TLL ++ P I ++D + +
Sbjct: 33 LTGPNGSGKTTLLRLIAGLLPPAAGTI---------------------KLDGGDIDDPDV 71
Query: 178 AEQLV------ACEDDES-QEQLM---DIYDRLDDISADTAEARA-ANILHGLGFTKEMQ 226
AE A + + E L + A EA A + H
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH--------- 122
Query: 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR---ILV 283
S G + R+ALAR L + +LDEPT LD A E ++ + I++
Sbjct: 123 -LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVI 181
Query: 284 IISHS 288
+H
Sbjct: 182 AATHI 186
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 64.5 bits (157), Expect = 5e-11
Identities = 62/212 (29%), Positives = 88/212 (41%), Gaps = 52/212 (24%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-----------KNSHLRFA 467
G+DL R + LVGPNGAGK+TLL I G LTP+ G V + + R A
Sbjct: 21 GVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80
Query: 468 RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV------------ 515
Q + D+ + M R R + T R V
Sbjct: 81 SVPQDTSLSFEFDVRQVVEM--------GRTPHRSRFDTWTETDRAAVERAMERTGVAQF 132
Query: 516 --CPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLD-------METIDALADAIND 565
P+ LS G++ RV+ A LA P +LLLDEPT LD +E + L D
Sbjct: 133 ADRPVTSLSGGERQRVLLARALAQATP-VLLLDEPTASLDINHQVRTLELVRRLVD---- 187
Query: 566 FEGGLVLVS-HDFRLINQVAEEIWICENGKVT 596
+G + + HD L + +E+ + +G+V
Sbjct: 188 -DGKTAVAAIHDLDLAARYCDELVLLADGRVR 218
Score = 49.8 bits (119), Expect = 2e-06
Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 17/183 (9%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+ +++ S+ F +L L + G GL+G NG+GK+TLL + P +
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV--- 60
Query: 148 HLTREMPASDKSALTCVMEV----DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDI 203
L SA V + + E Q+V + + D + D
Sbjct: 61 -LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRF-DTWTETDRA 118
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
+ + A R + + SGG R R+ LARAL +LLLDEPT L
Sbjct: 119 AVERAMERTG--------VAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASL 170
Query: 264 DLD 266
D++
Sbjct: 171 DIN 173
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 62.5 bits (153), Expect = 5e-11
Identities = 55/219 (25%), Positives = 83/219 (37%), Gaps = 61/219 (27%)
Query: 422 FGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR--------KNSH------ 463
FG+ L +AL+G NGAGK+TLL I G L P G +R H
Sbjct: 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAG 76
Query: 464 -------------------LRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKII 504
L Y + + L+ + + FP +K+R
Sbjct: 77 IGYVPEGRRIFPELTVEENLLLGAYARRRAKRKA----RLERVYELFPRLKER------- 125
Query: 505 GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD---METIDALAD 561
R+Q LS G++ + A P LLLLDEP+ L +E I
Sbjct: 126 -------RKQ--LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIR 176
Query: 562 AINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
+ D ++LV + R ++A+ ++ E G+V EG
Sbjct: 177 ELRDEGVTILLVEQNARFALEIADRAYVLERGRV-VLEG 214
Score = 46.3 bits (111), Expect = 1e-05
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260
KE +++ SGG + +A+ARAL +P LLLLDEP+
Sbjct: 123 KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160
Score = 32.0 bits (74), Expect = 0.71
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLG 134
L L + G LLG NG+GK+TLL ++G
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG 48
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 63.2 bits (154), Expect = 6e-11
Identities = 64/228 (28%), Positives = 99/228 (43%), Gaps = 35/228 (15%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSV 455
I +QNVS+ Y P+ R L F ++L A +G G+GKST++ L+ G P+
Sbjct: 3 INLQNVSYTYQAGTPFEGRAL-FDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 456 GMVR----------KNSHLRFARYH----------QHLHE--LLDLDISPLDY-MLQSFP 492
G VR KN ++ R Q E L D+ P ++ + Q
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA 121
Query: 493 EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
E RE++ + L + P +LS GQ RV A + P +L+LDEPT LD
Sbjct: 122 EALAREKLALVGISESLFEKN---PF-ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Query: 553 METIDALADAINDF-EGGL--VLVSHDFRLINQVAEEIWICENGKVTK 597
+ L + G+ VLV+H + A+ +++ E GK+
Sbjct: 178 PKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL 225
Score = 50.1 bits (120), Expect = 1e-06
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 31/174 (17%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L D L + G +G GSGKST++ +L VP + + + ++ K+
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVD--DTLITSTSKNK-- 78
Query: 163 CVMEVDEERVRLE-KLAEQLVACEDDESQEQLMDIYDR--LDD---------ISADTAEA 210
D +++R + L Q ESQ +++ L D +S + AEA
Sbjct: 79 -----DIKQIRKKVGLVFQF-----PESQ-----LFEETVLKDVAFGPQNFGVSQEEAEA 123
Query: 211 RAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
A L +G ++ + +K + SGG R+A+A L ++P +L+LDEPT LD
Sbjct: 124 LAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 63.4 bits (154), Expect = 7e-11
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 30/198 (15%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDI 146
+ + S ++ ++ D + G +GLLG NG+GKST+ +LG
Sbjct: 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLG------------ 52
Query: 147 FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDD-----ESQEQLMDIYDRLD 201
M + D+ +T + E R RL ++A +V D+ +E L+ ++ R
Sbjct: 53 ------MISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLL-VFGRYF 105
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTK--DFSGGWRMRIALARALYVKPHLLLLDEP 259
+S EA ++L F + + + SGG + R+ LARAL P LL+LDEP
Sbjct: 106 GMSTREIEAVIPSLLE---FARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEP 162
Query: 260 TNHLDLDACVWLEEELKT 277
T LD A + E L++
Sbjct: 163 TTGLDPHARHLIWERLRS 180
Score = 58.0 bits (140), Expect = 3e-09
Identities = 55/180 (30%), Positives = 74/180 (41%), Gaps = 38/180 (21%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
I + VS Y D + +L F I L+GPNGAGKST+ ++ G ++P G
Sbjct: 2 NVAIDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRG 59
Query: 457 MV-----RKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIGRY-GL 509
+ S R AR + D LD PE RE + + GRY G+
Sbjct: 60 KITVLGEPVPSRARLARVAIGVVPQFDNLD-----------PEFTVRENLL-VFGRYFGM 107
Query: 510 TGR--QQVCP---------------IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
+ R + V P + LS G K R+ A P LL+LDEPT LD
Sbjct: 108 STREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 62.0 bits (151), Expect = 9e-11
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 25/198 (12%)
Query: 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELL 477
+N+ ++ ++GP G+GKS LL I G + P G + L E
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKIL----LNGKDITNLPPEKR 71
Query: 478 DLDISPLDYML----------------QSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQL 521
D+ P +Y L + + + ++ +I G+ P L
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-ETL 130
Query: 522 SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET----IDALADAINDFEGGLVLVSHDF 577
S G++ RV A P +LLLDEP + LD+ T + L +F ++ V+HDF
Sbjct: 131 SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF 190
Query: 578 RLINQVAEEIWICENGKV 595
+A+++ I NGK+
Sbjct: 191 EEAWALADKVAIMLNGKL 208
Score = 56.2 bits (136), Expect = 8e-09
Identities = 62/223 (27%), Positives = 93/223 (41%), Gaps = 52/223 (23%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI--- 144
+K+ N S + +L + LE+ G + +LG GSGKS LL + P I
Sbjct: 1 LKVENLSKDWKEFKLKNVS-LEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59
Query: 145 --DIFHLTREMPASDKS------ALTCVMEVDEE-----RVRLEKLAEQLVACEDDESQE 191
DI +L E D S AL M V + + R E
Sbjct: 60 GKDITNLPPEK--RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKE------------ 105
Query: 192 QLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP 251
I ++ +I+ I H L +K + SGG + R+A+ARAL V P
Sbjct: 106 ----IERKVLEIAEML------GIDHLL-------NRKPETLSGGEQQRVAIARALVVNP 148
Query: 252 HLLLLDEPTNHLDLDACVWLEEELKTYKR---ILVI-ISHSQD 290
+LLLDEP + LD+ L EELK ++ + V+ ++H +
Sbjct: 149 KILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 61.8 bits (151), Expect = 9e-11
Identities = 60/236 (25%), Positives = 97/236 (41%), Gaps = 58/236 (24%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG--DLTPSVGM 457
I +++++ Y D +++ I AL+GP+G GKSTLL L+ DL P
Sbjct: 1 IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA-- 56
Query: 458 VRKNSHLRFARYHQHLHELLDLDISPLDY-----ML-QS---FP--------------EV 494
+ ++ DLD+ L+ M+ Q FP +
Sbjct: 57 -PDEGEVLLD-----GKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGI 110
Query: 495 KDREEMRKII----GRYGLTGRQQVC---PIRQLSDGQKCRVVFAY-LAWQAPHLLLLDE 546
K +EE+ + + + L V LS GQ+ R+ A LA + P +LLLDE
Sbjct: 111 KLKEELDERVEEALRKAALWDE--VKDRLHALGLSGGQQQRLCLARALANE-PEVLLLDE 167
Query: 547 PTNHLDM-------ETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
PT+ LD E I L +V+V+H+ + +VA+ NG++
Sbjct: 168 PTSALDPISTAKIEELIAELKKEY-----TIVIVTHNMQQAARVADRTAFLLNGRL 218
Score = 59.5 bits (145), Expect = 6e-10
Identities = 58/221 (26%), Positives = 95/221 (42%), Gaps = 42/221 (19%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR------EVPVP 141
+++ + ++ + L+D L++ G L+G +G GKSTLL +L NR P
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLL-NRLNDLIPGAPDE 59
Query: 142 DHIDIFHLTREMPASDKSALTCVMEVDEERVRLEK---LAEQLVACEDDESQEQLMDIYD 198
+ + D + ++D + + L + + Q IYD
Sbjct: 60 GEVLLD-------GKD------IYDLDVDVLELRRRVGMVFQKPNPFP-------GSIYD 99
Query: 199 ------RLDDI-SADTAEARAANILHGLGFTKEMQQK-KTKDFSGGWRMRIALARALYVK 250
RL I + + R L E++ + SGG + R+ LARAL +
Sbjct: 100 NVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159
Query: 251 PHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHS 288
P +LLLDEPT+ LD + +EE ELK I VI++H+
Sbjct: 160 PEVLLLDEPTSALDPISTAKIEELIAELKKEYTI-VIVTHN 199
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 62.7 bits (153), Expect = 9e-11
Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 51/233 (21%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
+I V+++SFRY D + +++ F + +A+VG NG+GKSTL L+ G L P G
Sbjct: 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT 63
Query: 458 VRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPE-------VKD------------RE 498
+ L E D+ M+ P+ V+D RE
Sbjct: 64 ITVG--------GMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPRE 115
Query: 499 EM----RKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD-- 552
EM + + + G+ P R LS GQK RV A + P +++LDE T+ LD
Sbjct: 116 EMVERVDQALRQVGMEDFLNREPHR-LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
Query: 553 -----METIDALADAINDFEGGLVLVS--HDFRLINQVAE--EIWICENGKVT 596
+ET+ L + + G+ ++S HD +++ A+ + + G++
Sbjct: 175 GRREVLETVRQLKE-----QKGITVLSITHD---LDEAAQADRVIVMNKGEIL 219
Score = 36.1 bits (84), Expect = 0.038
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 30/171 (17%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L+D + G ++G NGSGKSTL +L +P I + M S+++
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGG----MVLSEET--- 75
Query: 163 CVMEVDEERVRL--EKLAEQLVAC--EDD-----ESQEQLMDIYDRLDDISADTAEARAA 213
V +V +V + + Q V +DD E+ + + R
Sbjct: 76 -VWDV-RRQVGMVFQNPDNQFVGATVQDDVAFGLENI-----------GVPREEMVERVD 122
Query: 214 NILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
L +G + ++ + SGG + R+A+A L ++P +++LDE T+ LD
Sbjct: 123 QALRQVGMEDFLNREPHR-LSGGQKQRVAIAGVLALQPDIIILDEATSMLD 172
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 64.2 bits (157), Expect = 1e-10
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 393 GKIPPPV----IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY 448
K P I V V+FRY DGP I ++ I+ +A+VGP+G+GKSTLL L+
Sbjct: 441 AKTDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLL 500
Query: 449 GDLTPSVGMV 458
G TP G V
Sbjct: 501 GFETPESGSV 510
Score = 43.8 bits (104), Expect = 2e-04
Identities = 47/186 (25%), Positives = 70/186 (37%), Gaps = 58/186 (31%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVP-----DHIDIFHL-------- 149
L D L++ G ++G +GSGKSTLL +L E P D D+ L
Sbjct: 469 LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528
Query: 150 -------TREMPAS--DKSALTCVMEVDE--ERVRLEKLAEQLVACEDDESQEQLMDIYD 198
R M S + A + +DE E A ++ +D + M ++
Sbjct: 529 LGVVLQNGRLMSGSIFENIAGGAPLTLDEAWE-------AARMAGLAED-IRAMPMGMHT 580
Query: 199 RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDE 258
+ + + SGG R R+ +ARAL KP +LL DE
Sbjct: 581 VISEGGG--------TL------------------SGGQRQRLLIARALVRKPRILLFDE 614
Query: 259 PTNHLD 264
T+ LD
Sbjct: 615 ATSALD 620
Score = 31.5 bits (72), Expect = 1.4
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRL- 579
LS GQ+ R++ A + P +LL DE T+ LD T +++++ + ++++H RL
Sbjct: 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAH--RLS 646
Query: 580 --INQVAEEIWICENGKV 595
N A+ I++ + G+V
Sbjct: 647 TIRN--ADRIYVLDAGRV 662
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 62.7 bits (153), Expect = 1e-10
Identities = 69/234 (29%), Positives = 100/234 (42%), Gaps = 46/234 (19%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSV 455
I Q V RY P+ R L + +++ +A++G G+GKSTLL + G L P+
Sbjct: 3 ITFQKVEHRYQYKTPFERRAL-YDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 456 GMVR----------KNSHLRFARY----------HQHLHELLDLDIS--PLDYMLQSFPE 493
G V KN L+ R HQ E ++ DI P+++ E
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSE 118
Query: 494 VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLD 552
+++ R++I GL +LS GQ RV A LA + P +L+LDEPT LD
Sbjct: 119 EDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAME-PEVLVLDEPTAGLD 177
Query: 553 -------METIDALADAINDFEGGL--VLVSHDFRLINQVAEEIWICENGKVTK 597
ME L E GL VLV+H + A++I + G V
Sbjct: 178 PKGRKEMMEMFYKLHK-----EKGLTTVLVTHSMEDAARYADQIVVMHKGTVFL 226
Score = 45.8 bits (109), Expect = 3e-05
Identities = 21/62 (33%), Positives = 38/62 (61%)
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+S + A+ +A ++ +G +E+ + + SGG R+A+A L ++P +L+LDEPT
Sbjct: 116 VSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAG 175
Query: 263 LD 264
LD
Sbjct: 176 LD 177
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 63.8 bits (156), Expect = 1e-10
Identities = 53/176 (30%), Positives = 77/176 (43%), Gaps = 42/176 (23%)
Query: 108 LELNCGRRYGLLGLNGSGKSTL-LAVL-----------GNREVPVPDHIDIFHLTREM-- 153
L L G+ GL+G +GSGKSTL LA+L +++ ++ L R M
Sbjct: 308 LTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQV 367
Query: 154 ----PASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAE 209
P S V ++ EE +R+ + +SA +
Sbjct: 368 VFQDPYGSLSPRMTVGQIIEEGLRVHEP------------------------KLSAAERD 403
Query: 210 ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
R L +G + + +FSGG R RIA+ARAL +KP L+LLDEPT+ LD
Sbjct: 404 QRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459
Score = 56.5 bits (137), Expect = 3e-08
Identities = 54/239 (22%), Positives = 98/239 (41%), Gaps = 48/239 (20%)
Query: 398 PVIMVQNVSFRYSDDGPW--IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
P++ ++N+S + +G + + F I+ LALVG +G+GKS I G L PS
Sbjct: 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILG-LLPSP 63
Query: 456 GMVRKNSHLRFARYHQHLHELLDL-----------DIS-----------PLDYMLQSFPE 493
+ + F +LL I PL + + E
Sbjct: 64 AAAHPSGSILF-----DGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAE 118
Query: 494 V----------KDREEMRKIIGRYGL---TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540
V R +++ G+ R P +LS GQ+ RV+ A P
Sbjct: 119 VLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP-HELSGGQRQRVMIAMALANEPD 177
Query: 541 LLLLDEPTNHLD----METIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
LL+ DEPT LD + +D L + + ++ ++HD ++ + A+ +++ ++G++
Sbjct: 178 LLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236
Score = 48.8 bits (117), Expect = 7e-06
Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 32/195 (16%)
Query: 89 KIANFSITFHGC----ELLQDTMLELNCGRRYGLLGLNGSGKS-TLLAVLGNREVPVPDH 143
I N S+ FH E ++ ++ G L+G +GSGKS T L++LG P H
Sbjct: 8 SIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAH 67
Query: 144 ---------IDIFHLT-REMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQL 193
D+ + R++ + + M E L L +QL
Sbjct: 68 PSGSILFDGEDLLAASERQLRGVRGNKIG--MIFQEPMTSLNPLHT---------IGKQL 116
Query: 194 MDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDF----SGGWRMRIALARALYV 249
++ +S A ARA +L +G + +K+ + SGG R R+ +A AL
Sbjct: 117 AEVLRLHRGLSRAAARARALELLELVGIPE--PEKRLDAYPHELSGGQRQRVMIAMALAN 174
Query: 250 KPHLLLLDEPTNHLD 264
+P LL+ DEPT LD
Sbjct: 175 EPDLLIADEPTTALD 189
Score = 48.8 bits (117), Expect = 7e-06
Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 51/241 (21%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEF-----GIDLDTR----LALVGPNGAGKSTLLNLI 447
P ++ V+++ + G ++ R ++ GI L R L LVG +G+GKSTL +
Sbjct: 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLAL 333
Query: 448 YGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQ-----SFPEVKDREEMRK 502
L PS G +R + Q + L ++ PL +Q + + R + +
Sbjct: 334 LR-LIPSQGEIRFDG--------QDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQ 384
Query: 503 IIG------RYGLTG---RQQVC----------PIR-----QLSDGQKCRVVFAYLAWQA 538
II L+ Q+V R + S GQ+ R+ A
Sbjct: 385 IIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILK 444
Query: 539 PHLLLLDEPTNHLDM----ETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGK 594
P L+LLDEPT+ LD + +D L D + +SHD ++ + + + +GK
Sbjct: 445 PELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504
Query: 595 V 595
+
Sbjct: 505 I 505
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 62.9 bits (153), Expect = 1e-10
Identities = 57/221 (25%), Positives = 89/221 (40%), Gaps = 36/221 (16%)
Query: 56 EALCRKLEADAKLNAEARACTGSLAVHPKSRD-----VKIANFSITFHGCELLQDTMLEL 110
E R+LE E + S A + +A S ++ ++ +
Sbjct: 8 EEAPRRLE---LSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVVNGLSFTV 64
Query: 111 NCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDE 169
G +GLLG NG+GKST+ +LG M + D +T +
Sbjct: 65 ASGECFGLLGPNGAGKSTIARMILG------------------MTSPDAGKITVLGVPVP 106
Query: 170 ERVRLEKLAEQLVACEDDESQE----QLMDIYDRLDDISADTAEARAANILHGLGFTKEM 225
R RL + +V D+ E + + ++ R +S EA ++L F +
Sbjct: 107 ARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLE---FARLE 163
Query: 226 QQKKTK--DFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+ + D SGG + R+ LARAL P LL+LDEPT LD
Sbjct: 164 SKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD 204
Score = 54.8 bits (132), Expect = 5e-08
Identities = 55/187 (29%), Positives = 73/187 (39%), Gaps = 38/187 (20%)
Query: 390 PSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG 449
G + I + VS Y D + L F + L+GPNGAGKST+ +I G
Sbjct: 32 SIPGSMSTVAIDLAGVSKSYGDKA--VVNGLSFTVASGECFGLLGPNGAGKSTIARMILG 89
Query: 450 DLTPSVGM-----VRKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKI 503
+P G V + R AR + D LD E RE + +
Sbjct: 90 MTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLD-----------LEFTVRENLL-V 137
Query: 504 IGRY-GLTGRQ--QVCP---------------IRQLSDGQKCRVVFAYLAWQAPHLLLLD 545
GRY G++ R+ V P + LS G K R+ A P LL+LD
Sbjct: 138 FGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD 197
Query: 546 EPTNHLD 552
EPT LD
Sbjct: 198 EPTTGLD 204
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 62.0 bits (150), Expect = 1e-10
Identities = 61/229 (26%), Positives = 109/229 (47%), Gaps = 37/229 (16%)
Query: 402 VQNVS--FRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNL------IYGDLTP 453
V N+S + Y +D I +++ I ++ ++GP+G+GKSTLL + IY
Sbjct: 10 VFNISRLYLYINDKA-ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIK 68
Query: 454 SVGMV---------------RKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDRE 498
G V RK + F + + H + +I+ Y L+S +K++
Sbjct: 69 VDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIA---YPLKSH-GIKEKR 124
Query: 499 EMRKI-------IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551
E++KI +G + + P QLS GQ+ R+ A P +LL+DEPT+ +
Sbjct: 125 EIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMI 184
Query: 552 DMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKW 598
D+ A+ I + E +V+VSH+ + + +VA+ + NG++ +W
Sbjct: 185 DIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEW 233
Score = 56.6 bits (136), Expect = 7e-09
Identities = 63/239 (26%), Positives = 112/239 (46%), Gaps = 28/239 (11%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
+L+D +++ +G++G +GSGKSTLL VL NR + + D ++ K
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIYD--------SKIKVDGK--- 72
Query: 162 TCVMEVDEERVRLE--KLAEQLVACEDDESQEQLMDIYDRLDD--ISADTAEAR-----A 212
V+ ++ +++ KL +++ + + IYD + S E R
Sbjct: 73 --VLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIV 130
Query: 213 ANILHGLGFTKEMQQK---KTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACV 269
L +G KE+ + SGG + R+ +ARAL +KP +LL+DEPT+ +D+
Sbjct: 131 EECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190
Query: 270 WLEEELKTYKR--ILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLE 326
+E+ + K +VI+SH+ + V + L +L +G + E F + EL E
Sbjct: 191 AIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 61.6 bits (150), Expect = 1e-10
Identities = 69/233 (29%), Positives = 99/233 (42%), Gaps = 53/233 (22%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTL---LNLI----Y 448
I + ++ Y ++ L F I LD L L+GP+GAGKS+L LNL+
Sbjct: 3 IQLNGINCFYG-----AHQAL-FDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS 56
Query: 449 GDL-----------TPS----------VGMVRKNSHLRFARYH--QHLHELLDLDISPLD 485
G L TPS VGMV F +Y+ HL +L +P
Sbjct: 57 GTLNIAGNHFDFSKTPSDKAIRELRRNVGMV-------FQQYNLWPHLTVQQNLIEAPCR 109
Query: 486 YMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545
+ S + R E K++ R L P+ LS GQ+ RV A P +LL D
Sbjct: 110 VLGLSKDQALARAE--KLLERLRLKPYADRFPL-HLSGGQQQRVAIARALMMEPQVLLFD 166
Query: 546 EPTNHLDMETIDALADAINDF-EGGL--VLVSHDFRLINQVAEEIWICENGKV 595
EPT LD E + I + E G+ V+V+H+ + + A + ENG +
Sbjct: 167 EPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHI 219
Score = 60.4 bits (147), Expect = 4e-10
Identities = 56/242 (23%), Positives = 96/242 (39%), Gaps = 55/242 (22%)
Query: 88 VKIANFSITFHGC-ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146
+ N F+G + L D L+ G LLG +G+GKS+LL VL E+P ++I
Sbjct: 5 LNGINC---FYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61
Query: 147 ----FHLTREMPASDKSAL----------------TCVME-VDEERVRLEKLAEQLVACE 185
F ++ L V + + E R+ L++
Sbjct: 62 AGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKD----- 116
Query: 186 DDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALAR 245
++ + + +RL A+ LH SGG + R+A+AR
Sbjct: 117 --QALARAEKLLERLR--LKPYADRFP---LH---------------LSGGQQQRVAIAR 154
Query: 246 ALYVKPHLLLLDEPTNHLDLD---ACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHL 302
AL ++P +LL DEPT LD + V + EL VI++H + + ++++
Sbjct: 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYM 214
Query: 303 DK 304
+
Sbjct: 215 EN 216
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 61.6 bits (150), Expect = 1e-10
Identities = 69/233 (29%), Positives = 105/233 (45%), Gaps = 39/233 (16%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++ N S F ++L + L ++ G ++G +GSGKSTLL + E I
Sbjct: 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-----ITSG 56
Query: 148 HLTRE-MPASDKSALTCVMEVDEERVRLE--------KLAEQLVACEDDESQEQLMDIYD 198
L + + +D VDE +R E L L A E+ +M
Sbjct: 57 DLIVDGLKVNDPK-------VDERLIRQEAGMVFQQFYLFPHLTALEN------VMFGPL 103
Query: 199 RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDE 258
R+ S + AE +A +L +G + + + SGG + R+A+ARAL VKP L+L DE
Sbjct: 104 RVRGASKEEAEKQARELLAKVGLAERAHHYPS-ELSGGQQQRVAIARALAVKPKLMLFDE 162
Query: 259 PTNHLD-------LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDK 304
PT+ LD L L EE T +VI++H F V + +I +DK
Sbjct: 163 PTSALDPELRHEVLKVMQDLAEEGMT----MVIVTHEIGFAEKVASRLIFIDK 211
Score = 55.9 bits (135), Expect = 1e-08
Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 39/205 (19%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIY-------GDL--------TPSVG--MVRKN 461
IDL+ + ++GP+G+GKSTLL I GDL P V ++R+
Sbjct: 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78
Query: 462 SHLRFARYH--QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
+ + F +++ HL L ++ PL S E ++ R+++ + GL R P
Sbjct: 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEA--EKQARELLAKVGLAERAHHYP-S 135
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME-------TIDALADAINDFEG-GLV 571
+LS GQ+ RV A P L+L DEPT+ LD E + LA+ EG +V
Sbjct: 136 ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-----EGMTMV 190
Query: 572 LVSHDFRLINQVAEEIWICENGKVT 596
+V+H+ +VA + + G++
Sbjct: 191 IVTHEIGFAEKVASRLIFIDKGRIA 215
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 61.3 bits (149), Expect = 2e-10
Identities = 60/236 (25%), Positives = 90/236 (38%), Gaps = 40/236 (16%)
Query: 88 VKIANFSITF----HGCELLQ---DTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV 140
+++ + S TF G L + L +N G L G +G+GKSTLL L +P
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61
Query: 141 PDHIDIFHL----------TREMPASDKSALTCV---MEVDEERVRLEKLAEQLVACEDD 187
I + H RE+ + + V + V LE +AE L+
Sbjct: 62 SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLE---- 117
Query: 188 ESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247
+ + A ARA +L L + + FSGG + R+ +AR
Sbjct: 118 -------------RGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGF 164
Query: 248 YVKPHLLLLDEPTNHLDL---DACVWLEEELKTYKRILVIISHSQDFLNGVCTNII 300
+LLLDEPT LD V L E K L+ I H ++ V ++
Sbjct: 165 IADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVM 220
Score = 49.7 bits (119), Expect = 1e-06
Identities = 48/202 (23%), Positives = 75/202 (37%), Gaps = 45/202 (22%)
Query: 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELL 477
+N+ ++ +AL GP+GAGKSTLL +Y + P G + +H +
Sbjct: 25 KNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI----------LVRHEGAWV 74
Query: 478 DL--------------DISPLDYMLQSFPEV------------------KDREEMRKIIG 505
DL I + L+ P V R R+++
Sbjct: 75 DLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLA 134
Query: 506 RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND 565
R + R P S G++ RV A +LLLDEPT LD + + I +
Sbjct: 135 RLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE 194
Query: 566 FEG---GLVLVSHDFRLINQVA 584
+ L+ + HD + VA
Sbjct: 195 AKARGAALIGIFHDEEVRELVA 216
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 61.2 bits (149), Expect = 2e-10
Identities = 61/221 (27%), Positives = 91/221 (41%), Gaps = 43/221 (19%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+++ N S F L D L++ G LLG +GSGK+TLL ++ E P D I
Sbjct: 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTIL 60
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD--------- 198
+ A+D + R Q A + M ++D
Sbjct: 61 FGGED--ATDVPV----------QERNVGFVFQHYALF------RHMTVFDNVAFGLRVK 102
Query: 199 -RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
R + A+ +L + + + SGG R R+ALARAL V+P +LLLD
Sbjct: 103 PRSERPPEAEIRAKVHELLKLVQLDW-LADRYPAQLSGGQRQRVALARALAVEPKVLLLD 161
Query: 258 EPTNHLDLDACVWLEEELKTYKRIL--------VIISHSQD 290
EP LDA V +EL+ + R L V ++H Q+
Sbjct: 162 EPFGA--LDAKV--RKELRRWLRRLHDELHVTTVFVTHDQE 198
Score = 57.3 bits (139), Expect = 3e-09
Identities = 63/224 (28%), Positives = 97/224 (43%), Gaps = 39/224 (17%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSV 455
I V+NVS R+ D + L+ + LD +AL+GP+G+GK+TLL LI G P
Sbjct: 3 IEVRNVSKRFGD-----FVALD-DVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS 56
Query: 456 GMV-------------RKNSHLRFARY--HQHLHELLD-----LDISPLDYMLQSFPEVK 495
G + +N F Y +H+ + D L + P + PE +
Sbjct: 57 GTILFGGEDATDVPVQERNVGFVFQHYALFRHM-TVFDNVAFGLRVKPRS---ERPPEAE 112
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
R ++ +++ L P QLS GQ+ RV A P +LLLDEP LD +
Sbjct: 113 IRAKVHELLKLVQLDWLADRYP-AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171
Query: 556 IDALADAINDFEGGL----VLVSHDFRLINQVAEEIWICENGKV 595
L + L V V+HD +VA+ + + G++
Sbjct: 172 RKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRI 215
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 61.2 bits (149), Expect = 2e-10
Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++I N ++ + E L++ L++ + L+G +G GKSTLL L NR + D +
Sbjct: 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSL-NR---MNDLVPGV 57
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD------RLD 201
+ ++ + ++V E R R+ + ++ M IYD RL
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKP--------NPFPMSIYDNIAYGPRLH 109
Query: 202 DI-SADTAEARAANILHGLGFTKEMQQKKTKD---FSGGWRMRIALARALYVKPHLLLLD 257
I + L E++ + SGG + R+ +ARAL V+P +LLLD
Sbjct: 110 GIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLD 169
Query: 258 EPTNHLDLDACVWLEE---ELKTYKRILVIISHS 288
EPT+ LD A +EE ELK K +VI++H+
Sbjct: 170 EPTSALDPIATGKIEELIQELKK-KYTIVIVTHN 202
Score = 39.2 bits (92), Expect = 0.004
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 70/224 (31%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLL---NLIYGDL 451
I ++N++ Y + + I+LD AL+GP+G GKSTLL N + DL
Sbjct: 1 AIEIENLNLFYGE------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN-DL 53
Query: 452 TPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDY-----ML----QSFP---------- 492
P V R + F ++ D I ++ M+ FP
Sbjct: 54 VPGV---RIEGKVLF-----DGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG 105
Query: 493 ----EVKDREEMRKIIGRYGLTG---------RQQVCPIRQLSDGQKCRVVFAY-LAWQA 538
+KD++E+ +I+ L R + LS GQ+ R+ A LA +
Sbjct: 106 PRLHGIKDKKELDEIV-EESLKKAALWDEVKDRLHDSALG-LSGGQQQRLCIARALAVE- 162
Query: 539 PHLLLLDEPTNHLD-------METIDALADAINDFEGGLVLVSH 575
P +LLLDEPT+ LD E I L +V+V+H
Sbjct: 163 PEVLLLDEPTSALDPIATGKIEELIQELKKKYT-----IVIVTH 201
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 63.1 bits (154), Expect = 2e-10
Identities = 56/234 (23%), Positives = 86/234 (36%), Gaps = 52/234 (22%)
Query: 91 ANFSITFH--------GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL------GNR 136
A+ IT G LL + E+ G R + G +G+GK++LL L G+
Sbjct: 389 ADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSG 448
Query: 137 EVPVPDHIDIFHLTRE--MPA-SDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQL 193
+ +P + L + +P + + AL +L L L
Sbjct: 449 RISMPADSALLFLPQRPYLPQGTLREALCYPN--AAPDFSDAELVAVLHKV-------GL 499
Query: 194 MDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHL 253
D+ +RLD+ E R +L SGG + R+A AR L KP
Sbjct: 500 GDLAERLDE------EDRWDRVL-----------------SGGEQQRLAFARLLLHKPKW 536
Query: 254 LLLDEPTNHLDLDACVWLEEELKT-YKRILVI-ISHSQDFLNGVCTNIIHLDKR 305
+ LDE T+ LD + L + LK VI + H L + + L
Sbjct: 537 VFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPT-LWNFHSRQLELLDD 589
Score = 60.8 bits (148), Expect = 1e-09
Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 22/189 (11%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP----SV 455
I ++N+S R D + L F + RL + G +GAGK++LL + G L P +
Sbjct: 393 ITLENLSLRTPDGQTLL-SELNFEVRPGERLLITGESGAGKTSLLRALAG-LWPWGSGRI 450
Query: 456 GMVRKNSHLRFARYHQHLHE--LLDLDISPLDYMLQSFPEVKDREEMRKI-----IGRYG 508
M +S L F +L + L + P F + + + K+ R
Sbjct: 451 SM-PADSALLFLPQRPYLPQGTLREALCYPNA--APDFSDAELVAVLHKVGLGDLAERLD 507
Query: 509 LTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIND--F 566
R R LS G++ R+ FA L P + LDE T+ LD ET D L + +
Sbjct: 508 EEDRWD----RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP 563
Query: 567 EGGLVLVSH 575
+ ++ V H
Sbjct: 564 DATVISVGH 572
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 60.2 bits (146), Expect = 3e-10
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMV--------RKNSHLRFARYHQH--------- 472
+AL+G +G+GKSTLL ++ G S G V + + R +H
Sbjct: 39 IALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFM 98
Query: 473 -LHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVF 531
+ L L+ L +L+ + R + ++ + GL R P QLS G++ RV
Sbjct: 99 LIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-AQLSGGEQQRVAL 157
Query: 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAI----NDFEGGLVLVSHDFRL 579
A P +L DEPT +LD +T D +AD + + L+LV+HD +L
Sbjct: 158 ARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL 209
Score = 44.0 bits (104), Expect = 1e-04
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
S+ + A +L LG K + + SGG + R+ALARA +P +L DEPT +L
Sbjct: 119 SSRQSRNGAKALLEQLGLGKRLDHLPAQ-LSGGEQQRVALARAFNGRPDVLFADEPTGNL 177
Query: 264 D 264
D
Sbjct: 178 D 178
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 61.1 bits (149), Expect = 4e-10
Identities = 49/239 (20%), Positives = 96/239 (40%), Gaps = 49/239 (20%)
Query: 399 VIMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
++ V+N+S + D + + F + L +VG +G+GKS L I G L P
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMG-LLPKPN 59
Query: 457 MVRKNSHLRFARYHQHLHELLDL-----------DIS-----PLDYM------------- 487
+ F +LL L +I+ P+ +
Sbjct: 60 ARIVGGEILF-----DGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEV 114
Query: 488 ----LQSFPEVKDREEMRKIIGRYGLTGRQQVC---PIRQLSDGQKCRVVFAYLAWQAPH 540
+ + + +E +++ G+ ++ P +LS G + RV+ A P
Sbjct: 115 LRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPH-ELSGGMRQRVMIAMALALNPK 173
Query: 541 LLLLDEPTNHLDMET----IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
LL+ DEPT LD+ +D L + + L+L++HD ++ ++A+ + + G++
Sbjct: 174 LLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRI 232
Score = 48.7 bits (117), Expect = 4e-06
Identities = 56/248 (22%), Positives = 99/248 (39%), Gaps = 61/248 (24%)
Query: 89 KIANFSITFH----GCELLQDTMLELNCGRRYGLLGLNGSGKSTL-LAVLGNREVPVP-- 141
++ N S++F + + EL G G++G +GSGKS L A++G +P P
Sbjct: 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMG--LLPKPNA 60
Query: 142 ---------DHIDIFHLTRE------------MPASDKSALTCVMEVDEERVRLEKLAEQ 180
D D+ L+ + + ++L VM + ++ +AE
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQ------IAEV 114
Query: 181 LVACEDDESQEQLMD-IYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRM 239
L S+++ + + L+ + E R + H + SGG R
Sbjct: 115 LRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPH--------------ELSGGMRQ 160
Query: 240 RIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVIISHSQDFL 292
R+ +A AL + P LL+ DEPT LD LD L+E + L++I+H +
Sbjct: 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDL---LKELQREKGTALILITHDLGVV 217
Query: 293 NGVCTNII 300
+ +
Sbjct: 218 AEIADRVA 225
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 62.4 bits (152), Expect = 4e-10
Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 29/195 (14%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD---KS 159
L+ L+ G L+G +GSGKST+ A+L N P + L +P
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV----LLDGVPLVQYDHHY 552
Query: 160 ALTCVMEVDEERVRL-----EKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAAN 214
V V +E V E +A L D+E I A A A +
Sbjct: 553 LHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEE--------------IMAAAKAANAHD 598
Query: 215 ILHGL--GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLE 272
+ G+ E+ +K ++ SGG + RIA+ARAL KP +L+LDE T+ LD + L+
Sbjct: 599 FIMEFPNGYDTEVGEKGSQ-LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQ 657
Query: 273 EELKTYKRILVIISH 287
E R +++I+H
Sbjct: 658 ESRSRASRTVLLIAH 672
Score = 56.3 bits (136), Expect = 4e-08
Identities = 63/246 (25%), Positives = 103/246 (41%), Gaps = 57/246 (23%)
Query: 389 FPSCGKIPPP----VIMVQNVSFRYSD--DGPWIYRNLEFGIDLDTRLALVGPNGAGKST 442
P G + P +I Q+VSF Y + D P + + L F + +ALVGP+G+GKST
Sbjct: 464 IPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKST 522
Query: 443 LLNLIYGDLTPSVGMVRKNSHLRFARY-HQHLHE--------------------LLDLDI 481
+ L+ P+ G V + + +Y H +LH L
Sbjct: 523 VAALLQNLYQPTGGQVLLDG-VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD 581
Query: 482 SPLDYML------------QSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRV 529
+P + ++ FP D E +G G QLS GQK R+
Sbjct: 582 TPDEEIMAAAKAANAHDFIMEFPNGYDTE-----VGEKG----------SQLSGGQKQRI 626
Query: 530 VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWI 589
A + P +L+LDE T+ LD E L ++ + ++L++H + + A++I +
Sbjct: 627 AIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILV 685
Query: 590 CENGKV 595
+ G V
Sbjct: 686 LKKGSV 691
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 59.8 bits (145), Expect = 4e-10
Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 46/225 (20%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD---K 158
+LQD L+ G L+G +GSGKST++A+L N P + L P S K
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV----LLDGKPISQYEHK 84
Query: 159 SALTCVMEVDEERVRL-----EKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAA 213
+ V V +E V + +A L +C + +E AA
Sbjct: 85 YLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKE--------------------AA 124
Query: 214 NILHGLGFTKEMQQ-------KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD 266
H F E+ +K SGG + R+A+ARAL P +L+LDE T+ LD +
Sbjct: 125 QKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184
Query: 267 ACVWLEEELKTY--KRILVIISHSQDFLNGV--CTNIIHLDKRKL 307
+ +++ L + +R +++I+H L+ V I+ LD ++
Sbjct: 185 SEQQVQQALYDWPERRTVLVIAHR---LSTVERADQILVLDGGRI 226
Score = 56.7 bits (137), Expect = 5e-09
Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 41/223 (18%)
Query: 403 QNVSFRYSD--DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460
QNV+F Y D + +++ F + ALVGP+G+GKST++ L+ P G V
Sbjct: 15 QNVTFAYPTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLL 73
Query: 461 NSHLRFARYHQHLHELLDL--------------DISPLDYMLQSFPEVKDRE-------- 498
+ H++LH + L +I+ Y LQS +E
Sbjct: 74 DGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIA---YGLQSCSFECVKEAAQKAHAH 130
Query: 499 ----EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
E+ G G + QLS GQK RV A + P +L+LDE T+ LD E
Sbjct: 131 SFISELAS--GYDTEVGEKG----SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184
Query: 555 TIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKV 595
+ + A+ D+ +++++H + + A++I + + G++
Sbjct: 185 SEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 60.3 bits (147), Expect = 4e-10
Identities = 61/234 (26%), Positives = 98/234 (41%), Gaps = 37/234 (15%)
Query: 398 PVIMVQN--VSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
P++ ++ VSF DG +L +D ++GPNGAGK+T++++I G P
Sbjct: 1 PILYLEGLSVSF----DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDE 56
Query: 456 GMVRKNSH-------LRFAR------------YHQH-LHELLDL----DISPLDYMLQSF 491
G V + AR + + E L+L D S +
Sbjct: 57 GSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRL 116
Query: 492 -PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550
E KDR + +++ GL LS GQK + L Q P LLLLDEP
Sbjct: 117 SAEEKDR--IEEVLETIGLADEADR-LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAG 173
Query: 551 LDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTKWEGNI 602
+ E + A+ + G +V+V HD + +A+++ + G V EG++
Sbjct: 174 MTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLA-EGSL 226
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 60.5 bits (147), Expect = 5e-10
Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 22/185 (11%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
+I+ +NVSF+Y D + +++ F I ++VG NG+GKST+ L+ G G
Sbjct: 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 458 VRKNSH------LRFARYH----------QHLHELLDLDISPLDYMLQSF--PEVKDREE 499
+ N+ R H Q + ++ D++ + L++ P +
Sbjct: 66 IFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVA---FGLENHAVPYDEMHRR 122
Query: 500 MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559
+ + + + + R P LS GQK RV A + P +++LDE T+ LD + L
Sbjct: 123 VSEALKQVDMLERADYEP-NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL 181
Query: 560 ADAIN 564
D +
Sbjct: 182 LDLVR 186
Score = 37.0 bits (86), Expect = 0.019
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA---CVWLEEELKTYKRILVI-ISH 287
SGG + R+A+A L + P +++LDE T+ LD DA + L ++K+ I +I I+H
Sbjct: 144 SGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH 201
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 59.9 bits (145), Expect = 5e-10
Identities = 56/188 (29%), Positives = 76/188 (40%), Gaps = 27/188 (14%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN----SHLRFARYHQHLHELLDLDISPL- 484
L LVGPNGAGKSTLL + G +T G ++ +H L P
Sbjct: 28 LHLVGPNGAGKSTLLARMAG-MTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFA 86
Query: 485 ----DYMLQSFPEVKDREEMRKIIGRYGLT---GRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
Y+ P+ E + + G L GR QLS G+ RV A + Q
Sbjct: 87 MPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRS----TNQLSGGEWQRVRLAAVVLQ 142
Query: 538 -------APHLLLLDEPTNHLDMETIDALADAINDFEG---GLVLVSHDFRLINQVAEEI 587
A LLLLDEP N LD+ AL ++ +V+ SHD + A
Sbjct: 143 ITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRA 202
Query: 588 WICENGKV 595
W+ + GK+
Sbjct: 203 WLLKRGKL 210
Score = 39.8 bits (93), Expect = 0.002
Identities = 48/192 (25%), Positives = 68/192 (35%), Gaps = 33/192 (17%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167
E+ G L+G NG+GKSTLLA + S
Sbjct: 20 GEVRAGEILHLVGPNGAGKSTLLARMAGM----------------TSGSGSIQFA---GQ 60
Query: 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAAN-ILHGLGFTKEMQ 226
E +LA ++ M ++ L D N + L ++
Sbjct: 61 PLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKL- 119
Query: 227 QKKTKDFSGG-W-RMRIALARALYVKP------HLLLLDEPTNHLDLDACVWLE---EEL 275
+ T SGG W R+R+A A L + P LLLLDEP N LD+ L+ L
Sbjct: 120 GRSTNQLSGGEWQRVRLA-AVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178
Query: 276 KTYKRILVIISH 287
+V+ SH
Sbjct: 179 CQQGLAIVMSSH 190
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 60.0 bits (146), Expect = 6e-10
Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 41/206 (19%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
+ D L++ G + ++GL+GSGKSTLL + NR + P + +++ A + L
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCI-NRLIE-PTSGKVLIDGQDIAAMSRKELR 97
Query: 163 CVMEVDEERVRLEKLAE--QLVACEDDESQEQLMDIYDRLDD---------ISADTAEAR 211
+R +K++ Q A L+ L++ + E R
Sbjct: 98 --------ELRRKKISMVFQSFA---------LLPHRTVLENVAFGLEVQGVPRAEREER 140
Query: 212 AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD------- 264
AA L +G + + K + SGG + R+ LARAL V P +LL+DE + LD
Sbjct: 141 AAEALELVGL-EGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREM 199
Query: 265 LDACVWLEEELKTYKRILVIISHSQD 290
D + L+ EL ++ +V I+H D
Sbjct: 200 QDELLRLQAEL---QKTIVFITHDLD 222
Score = 46.1 bits (110), Expect = 2e-05
Identities = 54/224 (24%), Positives = 86/224 (38%), Gaps = 46/224 (20%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG- 456
+ V +VS + F I +G +G+GKSTLL I + P+ G
Sbjct: 36 QTVGVNDVSLD-------VREGEIFVI--------MGLSGSGKSTLLRCINRLIEPTSGK 80
Query: 457 ------MVRKNSH--LRFARYH------QH---LHELLDLDISPLDYMLQSFPEVKDREE 499
+ S LR R Q L L+ +Q P + E
Sbjct: 81 VLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREER 140
Query: 500 MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD----MET 555
+ + GL G + P +LS G + RV A P +LL+DE + LD E
Sbjct: 141 AAEALELVGLEGWEHKYP-DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREM 199
Query: 556 IDALADAINDFEGGLVLVSHD----FRLINQVAEEIWICENGKV 595
D L + + +V ++HD RL +++A I ++G++
Sbjct: 200 QDELLRLQAELQKTIVFITHDLDEALRLGDRIA----IMKDGRL 239
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 61.5 bits (150), Expect = 7e-10
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISH 287
SGG R RIALARALY P L++LDEP ++LD + L K +V+I+H
Sbjct: 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
Score = 57.7 bits (140), Expect = 1e-08
Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHE 475
I + + F + L ++GP+G+GKSTL L+ G P+ G VR L A Q E
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR----LDGADLRQWDRE 406
Query: 476 LLDLDISPLDYMLQSFP--------EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDG--- 524
L I L ++ F + + K+I L G ++ I +L G
Sbjct: 407 QLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHEL--ILRLPQGYDT 464
Query: 525 ------------QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGG- 569
Q+ R+ A + P L++LDEP ++LD E ALA AI GG
Sbjct: 465 RIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGT 524
Query: 570 LVLVSHDFRLINQVAEEIWICENGKV 595
+V+++H + ++I + ++G++
Sbjct: 525 VVVIAHRPSAL-ASVDKILVLQDGRI 549
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 60.2 bits (146), Expect = 8e-10
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 30/208 (14%)
Query: 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVD 168
E GR G LG NG+GKST + ++ T +P S C +V
Sbjct: 24 EAQKGRIVGFLGPNGAGKSTTMKII----------------TGYLPPDSGSVQVCGEDVL 67
Query: 169 EERVRLEK----LAEQLVACEDDESQEQLM---DIYDRLDDISADTAEARAANILHGLGF 221
+ +++ L E D +E L IY + + R ++ +G
Sbjct: 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG----MKGQLLKQRVEEMIELVGL 123
Query: 222 TKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRI 281
E Q KK S G+R R+ LA+AL P +L+LDEPT LD + V + +K +
Sbjct: 124 RPE-QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD 182
Query: 282 LVII--SHSQDFLNGVCTNIIHLDKRKL 307
II +H + +C +I ++K K+
Sbjct: 183 KTIILSTHIMQEVEAICDRVIIINKGKI 210
Score = 57.5 bits (139), Expect = 5e-09
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 14/136 (10%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH------LRFARYHQHL--HELLDLDI 481
+ +GPNGAGKST + +I G L P G V+ R +L H L LD+
Sbjct: 31 VGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90
Query: 482 SPLDYM-----LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536
+Y+ + ++ + ++I GL Q I QLS G + RV A
Sbjct: 91 YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-KIGQLSKGYRQRVGLAQALI 149
Query: 537 QAPHLLLLDEPTNHLD 552
P +L+LDEPT LD
Sbjct: 150 HDPKVLILDEPTTGLD 165
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 60.1 bits (146), Expect = 8e-10
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 33/225 (14%)
Query: 400 IMVQNVSFRYSDDGPWIYR---NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
I ++N++ Y + P+ + N+ I+ + L+G G+GKSTL+ + G L P+ G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 457 MV--------RKNSHLRFAR--------Y--HQHLHELLDLDIS--PLDYMLQSFPEVKD 496
+ K L R Y +Q E ++ DI+ P++ L S E+++
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL-SEEEIEN 121
Query: 497 REEMRKIIGRYGLT--GRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
R +++ + GL + P +LS GQK RV A + P +L+LDEPT LD +
Sbjct: 122 R--VKRAMNIVGLDYEDYKDKSPF-ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178
Query: 555 TIDALADAIND----FEGGLVLVSHDFRLINQVAEEIWICENGKV 595
D + + I + + ++LVSH + ++A+ I + GK
Sbjct: 179 GRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKC 223
Score = 48.1 bits (115), Expect = 5e-06
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 36/231 (15%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L + +E+ G GL+G GSGKSTL I HL + + +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTL----------------IQHLNGLLKPTSGKIII 66
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMD--IYDRLDDI---------SADTAEAR 211
+++ +++V+L + ++ V + QL + I DI S + E R
Sbjct: 67 DGVDITDKKVKLSDIRKK-VGLVFQYPEYQLFEETIEK---DIAFGPINLGLSEEEIENR 122
Query: 212 AANILHGLGFTKE-MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD---LDA 267
++ +G E + K + SGG + R+A+A + ++P +L+LDEPT LD D
Sbjct: 123 VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDE 182
Query: 268 CVWLEEEL-KTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
+ +EL K Y ++++SHS + + + II ++K K + G E F
Sbjct: 183 ILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 58.7 bits (142), Expect = 1e-09
Identities = 59/200 (29%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 423 GIDLDTRLA----LVGPNGAGKSTLLNLIYGDLTPSVGMV---------RKNSHLRFARY 469
G+ R L G +GAGKSTLL LI G PS G + KN + F R
Sbjct: 20 GVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79
Query: 470 H-----QHLHELLDLDIS-----PLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
Q H L+D + PL S +++ R + + + GL + + PI
Sbjct: 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR--VSAALDKVGLLDKAKNFPI- 136
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD---METIDALADAINDFEGGLVLVSHD 576
QLS G++ RV A P +LL DEPT +LD E I L + N +++ +HD
Sbjct: 137 QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHD 196
Query: 577 FRLINQVAEEIWICENGKVT 596
LI++ + + +G +
Sbjct: 197 IGLISRRSYRMLTLSDGHLH 216
Score = 46.8 bits (111), Expect = 8e-06
Identities = 55/184 (29%), Positives = 74/184 (40%), Gaps = 46/184 (25%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI-----DIFHL-TRE 152
G + LQ + G L G +G+GKSTLL ++ E P I DI L RE
Sbjct: 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRE 73
Query: 153 MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMD--IYDR------LDDIS 204
+P L Q+ D LMD +YD + S
Sbjct: 74 VPF---------------------LRRQIGMIFQD--HHLLMDRTVYDNVAIPLIIAGAS 110
Query: 205 ADTAEARAANILHGLGFTKEMQQKKTKDF----SGGWRMRIALARALYVKPHLLLLDEPT 260
D R + L +G K K+F SGG + R+ +ARA+ KP +LL DEPT
Sbjct: 111 GDDIRRRVSAALDKVGLLD-----KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPT 165
Query: 261 NHLD 264
+LD
Sbjct: 166 GNLD 169
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 59.2 bits (144), Expect = 1e-09
Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 39/230 (16%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
++ V+N+S Y + G +N+ I+ +A++GP+GAGKSTLL I + PS G +
Sbjct: 1 MLEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 459 RKN---------SHLRFARYH-----QHLHELLDLDI------------SPLDYMLQSFP 492
LR R QH + + L + +L F
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 493 EVKDREEMRKIIGRYGLTGR--QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550
E +D+E + R GL + Q+ QLS GQ+ RV A Q P L+L DEP
Sbjct: 120 E-EDKERALSALERVGLADKAYQRA---DQLSGGQQQRVAIARALAQQPDLILADEPIAS 175
Query: 551 LDMET----IDALADAINDFEGGLVLVS-HDFRLINQVAEEIWICENGKV 595
LD +T +D L IN +G V+++ H L + A+ I + G++
Sbjct: 176 LDPKTSKQVMDYLKR-INKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
Score = 53.5 bits (129), Expect = 7e-08
Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 62/241 (25%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L++ L +N G ++G +G+GKSTLL + NR V P I ++ L
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NRLVE-PSSGSILLEGTDITKLRGKKLR 75
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHG-LG- 220
+ R R+ + + ++ +RL + N+LHG LG
Sbjct: 76 KL------RRRIGMIFQHY-------------NLIERLTVL---------ENVLHGRLGY 107
Query: 221 ----------FTKEMQQ----------------KKTKDFSGGWRMRIALARALYVKPHLL 254
F++E ++ ++ SGG + R+A+ARAL +P L+
Sbjct: 108 KPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLI 167
Query: 255 LLDEPTNHLDLDACVWLEEELKTYKR---ILVIIS-HSQDFLNGVCTNIIHLDKRKLKYY 310
L DEP LD + + LK + I VII+ H D I+ L ++ +
Sbjct: 168 LADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227
Query: 311 G 311
G
Sbjct: 228 G 228
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 58.3 bits (142), Expect = 1e-09
Identities = 54/228 (23%), Positives = 91/228 (39%), Gaps = 66/228 (28%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL-GNREVPVPDHIDIF 147
+I + ++ G E+L+ L + G + L+G NGSGKSTL + G+ P +
Sbjct: 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH-----PKY---- 52
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
EV E + + +DI+
Sbjct: 53 ------------------EVTEGEILFKG------------------------EDITDLP 70
Query: 208 AEARAANILHGLGFTK--EMQQKKTKDF--------SGGWRMRIALARALYVKPHLLLLD 257
E RA + L F E+ K DF SGG + R + + L ++P L +LD
Sbjct: 71 PEERARLGI-FLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILD 129
Query: 258 EPTNHLDLDACVWLEEELKTYKRI---LVIISHSQDFLNGVCTNIIHL 302
EP + LD+DA + E + + ++II+H Q L+ + + +H+
Sbjct: 130 EPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHV 177
Score = 56.0 bits (136), Expect = 5e-09
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 41/205 (20%)
Query: 408 RYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV--GMVR-KNSHL 464
S G I + + I AL+GPNG+GKSTL I G V G + K
Sbjct: 7 HVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG--- 63
Query: 465 RFARYHQHLHELLDLDISP-----LDYMLQS---FPEVKDREEMRKIIGRYGLTGRQQVC 516
++ DL + Q P VK+ + +R + G +G
Sbjct: 64 ---------EDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV--NEGFSG----- 107
Query: 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EG-GLVLV 573
G+K R L P L +LDEP + LD++ + +A+ IN EG ++++
Sbjct: 108 -------GEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLII 160
Query: 574 SHDFRLINQV-AEEIWICENGKVTK 597
+H RL++ + + + + +G++ K
Sbjct: 161 THYQRLLDYIKPDRVHVLYDGRIVK 185
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 59.8 bits (145), Expect = 1e-09
Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 28/177 (15%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167
+ G +GLLG NG+GK+T L +L L P D +++ E
Sbjct: 28 FHVQRGECFGLLGPNGAGKTTTLRML---------------LGLTHP--DAGSISLCGEP 70
Query: 168 DEERVRLEKLAEQLVACED----DESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK 223
R R + +V D D + + + ++ R +SA A A +L F K
Sbjct: 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLE---FAK 127
Query: 224 EMQQK---KTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT 277
++ K K + SGG + R+ LARAL P +L+LDEPT LD A + E L++
Sbjct: 128 -LENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS 183
Score = 57.1 bits (138), Expect = 7e-09
Identities = 54/184 (29%), Positives = 73/184 (39%), Gaps = 38/184 (20%)
Query: 393 GKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452
G + I +NV RY D + L F + L+GPNGAGK+T L ++ G
Sbjct: 1 GPMSVAPIDFRNVEKRYGDK--LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH 58
Query: 453 PSVGMVRK-----NSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIGR 506
P G + S R AR + D LD P+ RE + + GR
Sbjct: 59 PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLD-----------PDFTVRENLL-VFGR 106
Query: 507 Y-GLTG---RQQV--------------CPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
Y GL+ R V + +LS G K R+ A P +L+LDEPT
Sbjct: 107 YFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT 166
Query: 549 NHLD 552
LD
Sbjct: 167 TGLD 170
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 57.6 bits (140), Expect = 1e-09
Identities = 50/177 (28%), Positives = 67/177 (37%), Gaps = 56/177 (31%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSV--GMVR---KNSHLRFARYH-----QHLHELLDL 479
A++GP+GAGKSTLLN + G T G V + R R Q L
Sbjct: 38 TAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTL 97
Query: 480 DISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQA 538
+ RE + +R LS G++ RV A L
Sbjct: 98 TV---------------RETLMFAAK------------LRGLSGGERKRVSIALELVSN- 129
Query: 539 PHLLLLDEPTNHLD-------METIDALADAINDFEGGLVLVSHDFRLINQVAEEIW 588
P LL LDEPT+ LD M + LAD G ++ S I+Q + EI+
Sbjct: 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLAD-----TGRTIICS-----IHQPSSEIF 176
Score = 51.0 bits (123), Expect = 2e-07
Identities = 46/215 (21%), Positives = 79/215 (36%), Gaps = 47/215 (21%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
+LL++ + G ++G +G+GKSTLL L R + ++
Sbjct: 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL------------- 69
Query: 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLG 220
++ + + + Y DDI T R L
Sbjct: 70 ------INGRPLDKRSFRKII--------------GYVPQDDILHPTLTVRET-----LM 104
Query: 221 FTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD----LDACVWLEEELK 276
F +++ SGG R R+++A L P LL LDEPT+ LD L L
Sbjct: 105 FAAKLRG-----LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD 159
Query: 277 TYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
T + I+ I + + ++ L + ++ Y+G
Sbjct: 160 TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 58.6 bits (142), Expect = 2e-09
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 42/211 (19%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-----------KNSHLRFA 467
G+ L ++++G +G+GKST L I PS G +R K+ L+ A
Sbjct: 24 GVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83
Query: 468 RYHQ-------------------HLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYG 508
Q H+ L ++ +P+ + S E +R E K + + G
Sbjct: 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAE--KYLAKVG 141
Query: 509 LTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMETIDALADAINDF- 566
+ + P LS GQ+ RV A LA + P ++L DEPT+ LD E + + + D
Sbjct: 142 IAEKADAYPA-HLSGGQQQRVAIARALAME-PEVMLFDEPTSALDPELVGEVLKVMQDLA 199
Query: 567 -EG-GLVLVSHDFRLINQVAEEIWICENGKV 595
EG +V+V+H+ V+ + GK+
Sbjct: 200 EEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230
Score = 53.6 bits (129), Expect = 8e-08
Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 24/236 (10%)
Query: 96 TFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPA 155
+ E+L+ L+ N G ++G +GSGKST L + E P I + E
Sbjct: 15 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRV---NGEEIR 71
Query: 156 SDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDD-------ISADTA 208
+ + D+ ++ ++L +L + M + + + + +S A
Sbjct: 72 LKRDKDGQLKPADKRQL--QRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEA 129
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD---- 264
RA L +G E SGG + R+A+ARAL ++P ++L DEPT+ LD
Sbjct: 130 IERAEKYLAKVGIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELV 188
Query: 265 ---LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
L L EE +T +V+++H F V +++I L + K++ G + F
Sbjct: 189 GEVLKVMQDLAEEGRT----MVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 58.5 bits (141), Expect = 2e-09
Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 48/226 (21%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR------EVPVP 141
+K+ N S + ++L+ +E+ + ++G +G GKST L L NR EV V
Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL-NRMNELESEVRVE 66
Query: 142 DHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD--- 198
++ F+ + E RV L +L Q V+ + M +YD
Sbjct: 67 GRVEFFN----------------QNIYERRVNLNRLRRQ-VSMVHPKPNLFPMSVYDNVA 109
Query: 199 ------------RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARA 246
+DDI + + A++ + K K D SGG + R+ +ARA
Sbjct: 110 YGVKIVGWRPKLEIDDIVE--SALKDADLWDEI---KHKIHKSALDLSGGQQQRLCIARA 164
Query: 247 LYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK----RILVIISHS 288
L VKP +LL+DEP LD A + +E +++ + +VI+SH+
Sbjct: 165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210
Score = 32.3 bits (73), Expect = 0.64
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLL 444
P I V N+SF Y D I + I A++GP+G GKST L
Sbjct: 6 PAIKVNNLSFYY--DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFL 50
Score = 30.8 bits (69), Expect = 1.9
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSH 575
LS GQ+ R+ A P +LL+DEP LD + I E +V+VSH
Sbjct: 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209
Query: 576 DFRLINQVAE 585
+ ++++++
Sbjct: 210 NLHQVSRLSD 219
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 58.8 bits (143), Expect = 2e-09
Identities = 53/224 (23%), Positives = 86/224 (38%), Gaps = 54/224 (24%)
Query: 383 KTVTFTFPSCGKIPPPVIM--VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGK 440
K + FP + V VSF I +T L LVG +G GK
Sbjct: 8 KNLKKYFPVGKGFGKKRYVKAVDGVSFS-------IKEG-------ET-LGLVGESGCGK 52
Query: 441 STLLNLIYGDLTPSVGMV----RKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKD 496
STL LI G P+ G + + + L + + ELL+ + + L +P
Sbjct: 53 STLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLE-KVGLPEEFLYRYP---- 107
Query: 497 REEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMET 555
+LS GQ+ R+ A LA P L++ DEP + LD+
Sbjct: 108 ----------------------HELSGGQRQRIGIARALALN-PKLIVADEPVSALDVSV 144
Query: 556 ----IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
++ L D + + +SHD ++ +++ I + GK+
Sbjct: 145 QAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKI 188
Score = 54.5 bits (132), Expect = 4e-08
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 200 LDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEP 259
+ +S + R +L +G +E + + SGG R RI +ARAL + P L++ DEP
Sbjct: 77 ITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEP 136
Query: 260 TNHLDL 265
+ LD+
Sbjct: 137 VSALDV 142
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 60.1 bits (146), Expect = 2e-09
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 35/223 (15%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+ +NV+FRY ++ I+ +ALVG +G+GKSTL+NLI P G +
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390
Query: 460 KNSH------LRFARYH-----QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYG 508
+ H L R Q + L + I+ + + E DR E+ + +
Sbjct: 391 LDGHDLADYTLASLRRQVALVSQDVV-LFNDTIA--NNIAYGRTEQADRAEIERALAAAY 447
Query: 509 LT--------GRQQVCPIRQ----LSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMET 555
G PI + LS GQ+ R+ A L AP +L+LDE T+ LD E+
Sbjct: 448 AQDFVDKLPLGLDT--PIGENGVLLSGGQRQRLAIARALLKDAP-ILILDEATSALDNES 504
Query: 556 ---IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
+ A + + LV ++H I + A+ I + ++G++
Sbjct: 505 ERLVQAALERLMQGRTTLV-IAHRLSTI-EKADRIVVMDDGRI 545
Score = 51.6 bits (124), Expect = 9e-07
Identities = 53/204 (25%), Positives = 76/204 (37%), Gaps = 36/204 (17%)
Query: 76 TGSLAVHPKSRDVKIANFSITFHG--CELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
TG+ A+ DV+ N + + G L L + G L+G +GSGKSTL+ ++
Sbjct: 319 TGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLI 378
Query: 134 GNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQL------VACEDD 187
R PD I + D L L Q+ V +D
Sbjct: 379 -PRFYE-PDSGQI----------------LLDGHDLADYTLASLRRQVALVSQDVVLFND 420
Query: 188 ESQEQLMDIYDRLDDISADTAE--ARAANILH-----GLGFTKEMQQKKTKDFSGGWRMR 240
+ Y R + E AA LG + + SGG R R
Sbjct: 421 TIANNIA--YGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVL-LSGGQRQR 477
Query: 241 IALARALYVKPHLLLLDEPTNHLD 264
+A+ARAL +L+LDE T+ LD
Sbjct: 478 LAIARALLKDAPILILDEATSALD 501
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 59.0 bits (142), Expect = 2e-09
Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 41/230 (17%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPS 454
+I + V++ Y + P+ R L F IDL+ + AL+G G+GKSTLL + G L P+
Sbjct: 1 MIKFEKVNYTYQPNSPFASRAL-FDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT 59
Query: 455 VGMVR-------------------KNSHLRFARYHQHLHE---LLDLDISPLDYMLQSFP 492
G V K + F L E L D+ P ++ +
Sbjct: 60 EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIP--- 116
Query: 493 EVKDREEMRKIIGR----YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
+E+ KI GL +LS GQ RV A + P +L+LDEPT
Sbjct: 117 ----KEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPT 172
Query: 549 NHLDMET---IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
LD + + L ++I+ +VLV+H + A+ +++ E G +
Sbjct: 173 AGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHI 222
Score = 56.7 bits (136), Expect = 1e-08
Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 22/197 (11%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKS--- 159
L D LE+ G L+G GSGKSTLL L P + + + + K
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 160 ---ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANIL 216
+ V + E ++ E + + + + I + AE AA L
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFG-------------IPKEKAEKIAAEKL 128
Query: 217 HGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVW---LEE 273
+G E +K + SGG R+A+A L ++P +L+LDEPT LD A + L E
Sbjct: 129 EMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFE 188
Query: 274 ELKTYKRILVIISHSQD 290
+ + +V+++H D
Sbjct: 189 SIHQSGQTVVLVTHLMD 205
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 58.6 bits (142), Expect = 2e-09
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 14/164 (8%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-- 459
+ ++ Y G ++ ++ L ++GP+G GK+TLLNLI G + G +
Sbjct: 4 ISHLYADY--GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD 61
Query: 460 ----KNSHLRFARYHQHLHELLD----LDISPLDYMLQSFPEVKDREEMRKIIGRYGLTG 511
+ Q+ LL D L +++ E +++ + GL G
Sbjct: 62 GKPVEGPGAERGVVFQN-EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG 120
Query: 512 RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
++ I QLS GQ+ RV A P LLLLDEP LD T
Sbjct: 121 AEKR-YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT 163
Score = 48.2 bits (115), Expect = 5e-06
Identities = 50/179 (27%), Positives = 73/179 (40%), Gaps = 26/179 (14%)
Query: 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHL 149
I++ + G L+D L L G +LG +G GK+TLL ++ VP H I L
Sbjct: 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF-VP-YQHGSI-TL 60
Query: 150 TREMPASDKSALTCVMEVDEE----RVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISA 205
P A V+ +E R + +A L +L +
Sbjct: 61 D-GKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGL-----------------QLAGVEK 102
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
A +L +G + +++ SGG R R+ +ARAL P LLLLDEP LD
Sbjct: 103 MQRLEIAHQMLKKVGL-EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 59.1 bits (143), Expect = 2e-09
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 34/253 (13%)
Query: 88 VKIANFSITFH----GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP---- 139
+K++N + FH + L + L + G+ YG++G +G+GKSTL+ + E P
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 140 -VPDHIDIFHLTREMPASDKSALTCVME---VDEERVRLEKLAEQLVACEDDESQEQLMD 195
+ D D+ L+ + + + + + R +A L
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPL-------------- 107
Query: 196 IYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLL 255
LD+ D + + +L +G + + SGG + R+A+ARAL P +LL
Sbjct: 108 ---ELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLL 163
Query: 256 LDEPTNHLDLDACVWLEEELKTYKRIL----VIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
DE T+ LD + E LK R L ++I+H D + +C + + +L G
Sbjct: 164 CDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQG 223
Query: 312 GNYEAFCKTRLEL 324
E F + L
Sbjct: 224 TVSEIFSHPKTPL 236
Score = 56.0 bits (135), Expect = 2e-08
Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 26/187 (13%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVGMV---------RKNSHLRFARYH-----QHLHELL 477
++G +GAGKSTL+ + P+ G V NS L AR QH + L
Sbjct: 36 VIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95
Query: 478 DLDIS-----PLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA 532
+ PL+ L + P+ + + ++ +++ GL + P LS GQK RV A
Sbjct: 96 SRTVFGNVALPLE--LDNTPKDEIKRKVTELLALVGLGDKHDSYP-SNLSGGQKQRVAIA 152
Query: 533 YLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGL----VLVSHDFRLINQVAEEIW 588
P +LL DE T+ LD T ++ + + + L +L++H+ ++ ++ + +
Sbjct: 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVA 212
Query: 589 ICENGKV 595
+ NG++
Sbjct: 213 VISNGEL 219
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 57.9 bits (140), Expect = 3e-09
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 216 LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE-- 273
L +G KE + K+ SGG R+++AR L P +LLLDEPT+ LD + +EE
Sbjct: 115 LSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174
Query: 274 -ELKTYKRILVI-ISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
+LK + VI I+H+ + + L+K L Y Y+ F
Sbjct: 175 VKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220
Score = 54.0 bits (130), Expect = 4e-08
Identities = 61/233 (26%), Positives = 94/233 (40%), Gaps = 44/233 (18%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV- 458
I + VS YS G I +++ + +VGP+GAGKSTL+ LI + P+ G +
Sbjct: 4 IEFKEVS--YSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 459 --------------RKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKII 504
R+ + F + HL E D ML+ V D E I+
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQ--PHLFEGTVKDNIEYGPMLKGEKNV-DVEYYLSIV 118
Query: 505 GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIN 564
GL ++ LS G+ RV A P +LLLDEPT+ LD + + + + I
Sbjct: 119 ---GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175
Query: 565 DFEGGLVLVSHDFRLINQVAEEIWICENGKVTK---------WEGNILDYKET 608
+ + L IWI N + K +G +++Y +T
Sbjct: 176 KLKNKMNLTV------------IWITHNMEQAKRIGDYTAFLNKGILVEYAKT 216
Score = 31.3 bits (71), Expect = 1.2
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 86 RDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHID 145
+++ S + G E+L+D ++ G Y ++G +G+GKSTL+ ++ NR + P
Sbjct: 2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI-NRLID-PTEGS 59
Query: 146 IF 147
I
Sbjct: 60 IL 61
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 58.2 bits (141), Expect = 3e-09
Identities = 52/197 (26%), Positives = 77/197 (39%), Gaps = 26/197 (13%)
Query: 79 LAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV 138
L V S S +L + L L G LLG +G GKSTL +L E
Sbjct: 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES 63
Query: 139 PVPDHI-----DIFHLTREMPASDKSALTCVME-----VDEERVRLEKLAEQLVACEDDE 188
P ++ + L R + + + V + V+ + E + E L
Sbjct: 64 PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPL------- 116
Query: 189 SQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALY 248
L + ARA+ +L + + K+ SGG R+ LARAL
Sbjct: 117 ---------RHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALA 167
Query: 249 VKPHLLLLDEPTNHLDL 265
V+P LL+LDE ++LDL
Sbjct: 168 VEPKLLILDEAVSNLDL 184
Score = 45.8 bits (109), Expect = 3e-05
Identities = 58/243 (23%), Positives = 93/243 (38%), Gaps = 59/243 (24%)
Query: 398 PVIMVQNVSFRYSDDG-----PW--IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGD 450
++ V +S Y+ G + N+ + +AL+G +G GKSTL L+ G
Sbjct: 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL 61
Query: 451 LTPSVGMVR----------KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEM 500
+PS G V + F R Q + + S V R+ +
Sbjct: 62 ESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQ-------------DSISAVNPRKTV 108
Query: 501 RKIIG---RYGLT----GRQ-----------------QVCPIRQLSDGQKCRVVFAYLAW 536
R+II R+ L+ R P QLS GQ RV A
Sbjct: 109 REIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRP-PQLSGGQLQRVCLARALA 167
Query: 537 QAPHLLLLDEPTNHLDM----ETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICEN 592
P LL+LDE ++LD+ I L F + ++HD RL+ + + + + +N
Sbjct: 168 VEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDN 227
Query: 593 GKV 595
G++
Sbjct: 228 GQI 230
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 57.6 bits (139), Expect = 3e-09
Identities = 55/215 (25%), Positives = 83/215 (38%), Gaps = 33/215 (15%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK 158
++L + L + G + G +G GKSTLL ++ + P L E D
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP-----TSGTLLFE--GEDV 67
Query: 159 SALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD---DISAD-TAEARAAN 214
S L + + R ++ A+ D + D L I A A +
Sbjct: 68 STL----KPEAYRQQVSYCAQTPALFGDT--------VEDNLIFPWQIRNRRPDRAAALD 115
Query: 215 ILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEE 274
+L + K + SGG + RIAL R L P +LLLDE T+ LD +EE
Sbjct: 116 LLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175
Query: 275 LKTY----KRILVIISHSQDFLNGVCTNIIHLDKR 305
+ Y ++ I+H +D I H DK
Sbjct: 176 IHRYVREQNVAVLWITHDKD------QAIRHADKV 204
Score = 53.7 bits (129), Expect = 4e-08
Identities = 44/214 (20%), Positives = 80/214 (37%), Gaps = 29/214 (13%)
Query: 408 RYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFA 467
Y I N+ + +A+ GP+G GKSTLL ++ ++P+ G +
Sbjct: 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL----LFEGE 65
Query: 468 RYHQHLHELLDLDISPLDYMLQS---FPEV---------------KDREEMRKIIGRYGL 509
E +S Y Q+ F + DR ++ R+ L
Sbjct: 66 DVSTLKPEAYRQQVS---YCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFAL 122
Query: 510 TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAI----ND 565
I +LS G+K R+ P +LLLDE T+ LD + + I +
Sbjct: 123 PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVRE 182
Query: 566 FEGGLVLVSHDFRLINQVAEEIWICENGKVTKWE 599
++ ++HD + A+++ + G + +
Sbjct: 183 QNVAVLWITHDKDQAIRHADKVITLQPGHAGEMQ 216
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 57.4 bits (139), Expect = 3e-09
Identities = 66/235 (28%), Positives = 94/235 (40%), Gaps = 42/235 (17%)
Query: 90 IANFSITF-----HGCEL--LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD 142
++N S TF G L L++ L +N G L G +GSGKSTLL L +P
Sbjct: 7 VSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEG 66
Query: 143 HIDIFHLTREMPASDKSALTCVMEVDEE-------------RVR-LEKLAEQLVACEDDE 188
I + H + V+EV RV L+ +AE L+A
Sbjct: 67 QILVRHEGEWVDLVTAEPRE-VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA----- 120
Query: 189 SQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALY 248
+ + A A+AA++L L + + FSGG + R+ +AR
Sbjct: 121 ------------RGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFI 168
Query: 249 VKPHLLLLDEPTNHLDL---DACVWLEEELKTYKRILVIISHSQDFLNGVCTNII 300
V +LLLDEPT LD V L E K LV I H ++ V ++
Sbjct: 169 VDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLL 223
Score = 45.9 bits (109), Expect = 2e-05
Identities = 48/208 (23%), Positives = 79/208 (37%), Gaps = 47/208 (22%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHE 475
+ RN+ ++ + L GP+G+GKSTLL +Y + P G + +H E
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILV----------RHEGE 75
Query: 476 LLDL---------------------------DISPLDYMLQ-----SFPEVKDREEMRKI 503
+DL +S LD + + P R + +
Sbjct: 76 WVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADL 135
Query: 504 IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH-LLLLDEPTNHLDMETIDALADA 562
+ R L R S G++ RV A + + +LLLDEPT LD + +
Sbjct: 136 LTRLNLPERLWSLAPATFSGGEQQRVNIAR-GFIVDYPILLLDEPTASLDATNRAVVVEL 194
Query: 563 INDFEG---GLVLVSHDFRLINQVAEEI 587
I + + LV + HD + VA+ +
Sbjct: 195 IREAKARGAALVGIFHDEEVREAVADRL 222
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 57.2 bits (139), Expect = 4e-09
Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 40/230 (17%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV- 458
I +NV+F Y D+ + +++ F I +A+VGP GAGK+TL+NL+ P G +
Sbjct: 3 IEFENVNFSY-DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL 61
Query: 459 ---RKNSHLRFARYHQH----LHELLDLDISPLDYMLQSFPEVKDREEMR--KIIGRYGL 509
+ L + + ++ + P D E + K G +
Sbjct: 62 IDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDF 121
Query: 510 TGRQQVCPIRQ---------------LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
I + LS G++ + A + P +L+LDE T+++D E
Sbjct: 122 --------IMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTE 173
Query: 555 TIDALADAINDFEGG--LVLVSHDFRL-INQVAEEIWICENGKVTKWEGN 601
T + +A+ G ++++H RL + A++I + ++GK+ + EG
Sbjct: 174 TEKLIQEALEKLMKGRTSIIIAH--RLSTIKNADKILVLDDGKIIE-EGT 220
Score = 41.1 bits (97), Expect = 8e-04
Identities = 44/217 (20%), Positives = 87/217 (40%), Gaps = 38/217 (17%)
Query: 87 DVKIANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHID 145
+++ N + ++ +L+D + G ++G G+GK+TL+ +L R P
Sbjct: 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLL-MRFYD-PQKGQ 59
Query: 146 IFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLM---DIYDRL-- 200
I L + D + + +R + L Q+ + I + +
Sbjct: 60 I--LIDGIDIRD---------ISRKSLR-SMIGVVL--------QDTFLFSGTIMENIRL 99
Query: 201 -DDISADTAEARAANILHGLGFTKEMQQ-------KKTKDFSGGWRMRIALARALYVKPH 252
+ D AA F ++ + + S G R +A+ARA+ P
Sbjct: 100 GRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159
Query: 253 LLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISH 287
+L+LDE T+++D + ++E L+ R +II+H
Sbjct: 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAH 196
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 58.3 bits (141), Expect = 4e-09
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVGMVRKN--------SHLR-----FARYHQHLHELLD 478
L+GP+G GK+TLL L+ G P G + + HLR F Y H ++
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 479 LDIS-PLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
+++ L ++ P + + + + + L P QLS GQ+ RV A
Sbjct: 61 ENVAFGLK--MRKVPRAEIKPRVLEALRLVQLEEFADRKPH-QLSGGQQQRVALARALVF 117
Query: 538 APHLLLLDEPTNHLDMETIDALADAINDFEGGL----VLVSHDFRLINQVAEEIWICENG 593
P +LLLDEP + LD + D + + + L V V+HD +++ I I G
Sbjct: 118 KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKG 177
Query: 594 KV 595
K+
Sbjct: 178 KI 179
Score = 56.7 bits (137), Expect = 1e-08
Identities = 55/189 (29%), Positives = 80/189 (42%), Gaps = 45/189 (23%)
Query: 118 LLGLNGSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPASDKS--------ALTCV 164
LLG +G GK+TLL +L E P + D D+ ++ P + AL
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNV----PPHLRHINMVFQSYALFPH 56
Query: 165 MEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKE 224
M V+E +A L ++ + + R L L +E
Sbjct: 57 MTVEE------NVAFGL-----------------KMRKVPRAEIKPRVLEAL-RLVQLEE 92
Query: 225 MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL-- 282
+K SGG + R+ALARAL KP +LLLDEP + LD ++ ELKT + L
Sbjct: 93 FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI 152
Query: 283 --VIISHSQ 289
V ++H Q
Sbjct: 153 TFVFVTHDQ 161
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 58.5 bits (142), Expect = 4e-09
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 18/200 (9%)
Query: 98 HGCEL-LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPAS 156
G + + D L++ G + ++GL+GSGKSTL+ +L NR + P +I +++
Sbjct: 38 TGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLL-NRLIE-PTRGEILVDGKDIAKL 95
Query: 157 DKSALTCVMEVDEERVRLEKLAE--QLVACEDDESQEQLMDIYDRLDDISADTAEARAAN 214
+ L +R +K++ Q A + + + + + E RA
Sbjct: 96 SAAEL--------RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALE 147
Query: 215 ILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEE 274
L +G + K + SGG + R+ LARAL P +LL+DE + LD +++E
Sbjct: 148 ALELVGL-EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDE 206
Query: 275 L----KTYKRILVIISHSQD 290
L K+ +V I+H D
Sbjct: 207 LLELQAKLKKTIVFITHDLD 226
Score = 42.4 bits (100), Expect = 5e-04
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 29/189 (15%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVG--------MVRKN-SHLRFARYHQ----------- 471
++G +G+GKSTL+ L+ + P+ G + + + + LR R +
Sbjct: 59 IMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118
Query: 472 -HLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVV 530
H +L+ L+ +Q P+ + E + + GL G P +LS G + RV
Sbjct: 119 PHR-TVLENVAFGLE--VQGVPKAEREERALEALELVGLEGYADKYP-NELSGGMQQRVG 174
Query: 531 FAYLAWQAPHLLLLDEPTNHLD----METIDALADAINDFEGGLVLVSHDFRLINQVAEE 586
A P +LL+DE + LD E D L + + +V ++HD ++ +
Sbjct: 175 LARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDR 234
Query: 587 IWICENGKV 595
I I ++G++
Sbjct: 235 IAIMKDGEI 243
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 57.3 bits (139), Expect = 5e-09
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 30/181 (16%)
Query: 394 KIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP 453
K +I V+NVSF Y + +N+ F I+ +A++G NG+GKST+ ++ G L P
Sbjct: 2 KNKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP 61
Query: 454 SVGMVR------KNSHLRFARYH----------QHLHELLDLDISPLDYMLQSFPEVK-- 495
G ++ +L+ R Q + ++ DI+ + L E K
Sbjct: 62 QSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIA---FGL----ENKKV 114
Query: 496 DREEMRKIIGRY----GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551
++M+ II G+ P + LS GQK RV A + P +++ DE T+ L
Sbjct: 115 PPKKMKDIIDDLAKKVGMEDYLDKEP-QNLSGGQKQRVAIASVLALNPEIIIFDESTSML 173
Query: 552 D 552
D
Sbjct: 174 D 174
Score = 33.0 bits (76), Expect = 0.32
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 88 VKIANFSITFHGCE--LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHID 145
+K+ N S ++ E L++ E+N G +LG NGSGKST+ +L P I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 146 IFHLT 150
I +T
Sbjct: 68 IDGIT 72
Score = 30.7 bits (70), Expect = 2.3
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 222 TKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
++ K+ ++ SGG + R+A+A L + P +++ DE T+ LD
Sbjct: 132 MEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 56.3 bits (137), Expect = 7e-09
Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 38/185 (20%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDIF 147
++ N S + + L+ LE+ G LLG NG+GK+TLL ++G V IF
Sbjct: 5 EVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG--LVRPRSGRIIF 62
Query: 148 H---LTREMPASD--KSALTCVMEVDEERVRL---EKLAEQLVACEDDESQEQLMD-IYD 198
+T +P + + + V E RL E L A D E+QE+ ++ +Y+
Sbjct: 63 DGEDITG-LPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYE 121
Query: 199 ---RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLL 255
RL KE + ++ SGG + +A+ARAL +P LLL
Sbjct: 122 LFPRL----------------------KERRNQRAGTLSGGEQQMLAIARALMSRPKLLL 159
Query: 256 LDEPT 260
LDEP+
Sbjct: 160 LDEPS 164
Score = 52.9 bits (128), Expect = 1e-07
Identities = 60/240 (25%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 422 FGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN--------SHLRFAR- 468
G+ L+ +AL+G NGAGK+TLL I G + P G + + H R
Sbjct: 20 RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79
Query: 469 --Y-------------HQHLHELLDLDISP--------LDYMLQSFPEVKDREEMRKIIG 505
Y ++L LL L+ + + FP +K+R
Sbjct: 80 IAYVPEGRRIFPRLTVEENL--LLGAYARRDKEAQERDLEEVYELFPRLKER-------- 129
Query: 506 RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD-------METIDA 558
R G LS G++ + A P LLLLDEP+ L E I
Sbjct: 130 RNQRAG--------TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181
Query: 559 LADAINDFEGGL--VLVSHDFRLINQVAEEIWICENGKVTKWEGNI--LDYKETLRAKVL 614
L EGG+ +LV + R ++A+ ++ ENG++ G L +R L
Sbjct: 182 LRK-----EGGMTILLVEQNARFALEIADRGYVLENGRIV-LSGTAAELLADPDVREAYL 235
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 57.3 bits (139), Expect = 7e-09
Identities = 63/237 (26%), Positives = 97/237 (40%), Gaps = 65/237 (27%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +NVS RY ++ I+ L L+GP+G+GK+T L +I + P+ G +
Sbjct: 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 460 KNSHLRFARYHQHLHELLDLDISPLD---------YMLQS---FPEVK------------ 495
+ DIS LD Y++Q FP +
Sbjct: 60 ID----------------GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL 103
Query: 496 --DREEMRKII----GRYGLTGRQ--QVCPIRQLSDGQKCRV-VFAYLAWQAPHLLLLDE 546
D+E ++K GL + P +LS GQ+ RV V LA P +LL+DE
Sbjct: 104 GWDKERIKKRADELLDLVGLDPSEYADRYP-HELSGGQQQRVGVARALAAD-PPILLMDE 161
Query: 547 PTNHLDMETIDALADAINDFEGGL----VLVSHD----FRLINQVAEEIWICENGKV 595
P LD T L + I + + L V V+HD +L A+ I + + G++
Sbjct: 162 PFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKL----ADRIAVMDAGEI 214
Score = 56.5 bits (137), Expect = 1e-08
Identities = 51/217 (23%), Positives = 88/217 (40%), Gaps = 35/217 (16%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++ N S + + + D L + G L+G +GSGK+T L ++ NR + P +I
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMI-NRLIE-PTSGEIL 59
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAE---------QLVACEDDESQEQLMDIYD 198
+D E + E Q + + + +
Sbjct: 60 -------------------IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVP 100
Query: 199 RLDDISADTAEARAANILHGLGF-TKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
+L + + RA +L +G E + + SGG + R+ +ARAL P +LL+D
Sbjct: 101 KLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD 160
Query: 258 EPTNHLDLDACVWLEEELKTYKRIL----VIISHSQD 290
EP LD L+EE+K ++ L V ++H D
Sbjct: 161 EPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID 197
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 55.7 bits (135), Expect = 8e-09
Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 55/198 (27%)
Query: 424 IDLDTRLAL-VGPNGAGKSTLLNLI----YGDLTPS-------VGMVRKNS-----HLRF 466
I+ + L L VG NGAGK+T++ + G+L P+ ++R+ L F
Sbjct: 18 IEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAF 77
Query: 467 ARYHQHLHELL-DLDISPLDYML---QSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLS 522
+ + + L I L+ ++ Q E + + S
Sbjct: 78 ENANGKKYTITRSLAI--LENVIFCHQ--------GESNWPLLD----------MRGRCS 117
Query: 523 DGQKCRVVFAY-LAW------QAPHLLLLDEPTNHLDMETID-ALADAINDFEGG----L 570
G+K LA +L LDEPT +LD E I+ +LA+ I + + L
Sbjct: 118 GGEKVLASLIIRLALAETFGSNCG-ILALDEPTTNLDEENIEESLAEIIEERKSQKNFQL 176
Query: 571 VLVSHDFRLINQVAEEIW 588
++++HD L+ A+ I+
Sbjct: 177 IVITHDEELV-DAADHIY 193
Score = 44.1 bits (105), Expect = 5e-05
Identities = 40/192 (20%), Positives = 72/192 (37%), Gaps = 51/192 (26%)
Query: 120 GLNGSGKSTLL-AVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLA 178
G NG+GK+T++ A+ + LT E+P + K KL
Sbjct: 29 GQNGAGKTTIIEALK-------------YALTGELPPNSKG-----------GAHDPKLI 64
Query: 179 EQLVACEDDESQEQLMDIYDRLDDISADTAEA-RAANILHGLGFTKEMQQKK----TKDF 233
E + ++ + R+ IL + F + + +
Sbjct: 65 R---------EGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQGESNWPLLDMRGR 115
Query: 234 -SGGWRM------RIALARALYVKPHLLLLDEPTNHLDLDACVW-LEEELKTYKRI---- 281
SGG ++ R+ALA +L LDEPT +LD + L E ++ K
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQ 175
Query: 282 LVIISHSQDFLN 293
L++I+H ++ ++
Sbjct: 176 LIVITHDEELVD 187
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 57.4 bits (139), Expect = 1e-08
Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 55/248 (22%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY---------- 448
+ NVSF Y P I + F I L +A+VG +GAGKST+L L++
Sbjct: 262 AVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320
Query: 449 ------------GDLTPSVGMVRKNSHL---------RFARYHQHLHELLD-LDISPLDY 486
L ++G+V +++ L ++ R E+ + + +
Sbjct: 321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHD 380
Query: 487 MLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546
+QS PE +G GL +LS G+K RV A + P +L+LDE
Sbjct: 381 FIQSLPEG-----YDTGVGERGL----------KLSGGEKQRVAIARTILKNPPILILDE 425
Query: 547 PTNHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604
T+ LD T A+ A+ + G ++++H I A+EI + +NG++ + G
Sbjct: 426 ATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVE-RGT--- 480
Query: 605 YKETLRAK 612
++E L A
Sbjct: 481 HEELLAAG 488
Score = 40.8 bits (96), Expect = 0.002
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK--TYKRILVIISH 287
SGG + R+A+AR + P +L+LDE T+ LD ++ L+ + R ++I+H
Sbjct: 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAH 456
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 55.6 bits (134), Expect = 2e-08
Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 28/226 (12%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRN-------LEFGIDLDTRLALVGPNGAGKSTLLNLIYGD 450
++ V+N+S + R + F + LA++G NG+GKSTL ++ G
Sbjct: 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62
Query: 451 LTPSVGMVRKNSH-LRFARYH---QHLHELLD---------LDISP-LDYMLQSFPEVKD 496
+ P+ G + N H L F Y + + + L I LD+ L+ +++
Sbjct: 63 IEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEP 122
Query: 497 REEMRKIIG---RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM 553
+ ++I GL L+ GQK RV A P +++ DE LDM
Sbjct: 123 EQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
Query: 554 ETIDALADAINDFEGGL----VLVSHDFRLINQVAEEIWICENGKV 595
L + + + + + V+ +I +++++ + G+V
Sbjct: 183 SMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEV 228
Score = 35.6 bits (82), Expect = 0.056
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 15/159 (9%)
Query: 110 LNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDE 169
L G+ ++G NGSGKSTL +L P I I + D S
Sbjct: 36 LREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILIN--DHPLHFGDYSF--------- 84
Query: 170 ERVRLEKLAEQLVACEDDESQE--QLMDIYDRLD-DISADTAEARAANILHGLGFTKEMQ 226
R + ++ Q + Q++D RL+ D+ + + L +G +
Sbjct: 85 -RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHA 143
Query: 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
+ G + R+ALARAL ++P +++ DE LD+
Sbjct: 144 NYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 55.4 bits (133), Expect = 2e-08
Identities = 66/214 (30%), Positives = 96/214 (44%), Gaps = 33/214 (15%)
Query: 407 FRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV-------- 458
FRY D+ NL+F + T LVG NG GKSTL + G L P G V
Sbjct: 9 FRYQDEPVLKGLNLDFSLSPVT--GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLD 66
Query: 459 ---------RKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGL 509
R+ F Q + D+D S + + L++ V + E R++ L
Sbjct: 67 YSKRGLLALRQQVATVFQDPEQQIF-YTDID-SDIAFSLRNL-GVPEAEITRRVDEALTL 123
Query: 510 TG----RQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLD---METIDALAD 561
R Q PI+ LS GQK RV A L QA +LLL DEPT LD + A+
Sbjct: 124 VDAQHFRHQ--PIQCLSHGQKKRVAIAGALVLQARYLLL-DEPTAGLDPAGRTQMIAIIR 180
Query: 562 AINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
I +++ SHD LI ++++ +++ G++
Sbjct: 181 RIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQI 214
Score = 40.4 bits (94), Expect = 0.002
Identities = 52/218 (23%), Positives = 86/218 (39%), Gaps = 31/218 (14%)
Query: 117 GLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEK 176
GL+G NG GKSTL +L+ + + L +D + L
Sbjct: 31 GLVGANGCGKSTLF----------------MNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74
Query: 177 LAEQLVACEDDESQEQLM-----DIYDRLDDISADTAE-ARAANILHGLGFTKEMQQKKT 230
L +Q+ D Q+ DI L ++ AE R + L + + +
Sbjct: 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPI 134
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRI------LVI 284
+ S G + R+A+A AL ++ LLLDEPT LD + + +RI ++I
Sbjct: 135 QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG---RTQMIAIIRRIVAQGNHVII 191
Query: 285 ISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRL 322
SH D + + + L + ++ +G E F T
Sbjct: 192 SSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEA 229
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 57.3 bits (138), Expect = 2e-08
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 19/191 (9%)
Query: 113 GRRYGLLGLNGSGKSTLLAVL-GNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEER 171
G +GLLG+NG+GK+T +L G+ V D + KS LT + +V +
Sbjct: 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGD----------ATVAGKSILTNISDVHQNM 2014
Query: 172 VRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTK 231
Q A +D + + + +Y RL + A+ E A + LG + +
Sbjct: 2015 ----GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL-YADRLAG 2069
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY---KRILVIISHS 288
+SGG + +++ A AL P L+LLDEPT +D A L + + R +V+ SHS
Sbjct: 2070 TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHS 2129
Query: 289 QDFLNGVCTNI 299
+ +CT +
Sbjct: 2130 MEECEALCTRL 2140
Score = 38.5 bits (89), Expect = 0.012
Identities = 44/183 (24%), Positives = 87/183 (47%), Gaps = 22/183 (12%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVR---KNSHLRFARYHQHL-----HELLDLDIS 482
A +G NGAGK+T L+++ G L P+ G V K+ Q L H +L ++
Sbjct: 960 AFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLT 1019
Query: 483 PLDYMLQSFPEVKDRE------EMRKIIGRYGLTGRQQVCPIRQLSDG--QKCRVVFAYL 534
+++L + ++K R EM ++ GL ++ + LS G +K V A++
Sbjct: 1020 VAEHIL-FYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNE-EAQDLSGGMQRKLSVAIAFV 1077
Query: 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICEN 592
+++LDEPT+ +D + ++ D + + G +++ +H + + + I I
Sbjct: 1078 G--DAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQ 1135
Query: 593 GKV 595
G++
Sbjct: 1136 GRL 1138
Score = 35.8 bits (82), Expect = 0.082
Identities = 38/182 (20%), Positives = 81/182 (44%), Gaps = 28/182 (15%)
Query: 117 GLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEK 176
LG NG+GK+T L++L T +P + + L +++ L+
Sbjct: 960 AFLGHNGAGKTTTLSIL----------------TGLLPPTSGTVLVGGKDIE---TNLDA 1000
Query: 177 LAEQLVACEDDE------SQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKT 230
+ + L C + + + Y +L S + A+ +L G + + ++
Sbjct: 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHK-RNEEA 1059
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK--RILVIISHS 288
+D SGG + ++++A A +++LDEPT+ +D + + + L Y+ R +++ +H
Sbjct: 1060 QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHH 1119
Query: 289 QD 290
D
Sbjct: 1120 MD 1121
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 56.0 bits (136), Expect = 2e-08
Identities = 64/235 (27%), Positives = 100/235 (42%), Gaps = 54/235 (22%)
Query: 399 VIMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
+I ++N+S + G I+ N+ I ++G +GAGKSTL+ I P+ G
Sbjct: 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG 60
Query: 457 MVR---------KNSHLRFARYH-----QHLHELLDLDISPLDYMLQS--------FP-E 493
V LR AR QH +L S P E
Sbjct: 61 RVLVDGQDLTALSEKELRKARRQIGMIFQHF------------NLLSSRTVFDNVALPLE 108
Query: 494 V--KDREEMRKIIG----RYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLDE 546
+ + E++ + GL+ + P QLS GQK RV A LA P +LL DE
Sbjct: 109 LAGTPKAEIKARVTELLELVGLSDKADRYP-AQLSGGQKQRVAIARALA-SNPKVLLCDE 166
Query: 547 PTNHLDMETIDA----LADAINDFEGGL--VLVSHDFRLINQVAEEIWICENGKV 595
T+ LD T + L D IN E GL VL++H+ ++ ++ + + + + G++
Sbjct: 167 ATSALDPATTRSILELLKD-INR-ELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
Score = 39.0 bits (92), Expect = 0.005
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG + R+A+ARAL P +LL DE T+ LD
Sbjct: 142 SGGQKQRVAIARALASNPKVLLCDEATSALD 172
Score = 30.5 bits (70), Expect = 3.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLL 130
L + L + G +G++G +G+GKSTL+
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLI 48
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 55.0 bits (133), Expect = 2e-08
Identities = 64/236 (27%), Positives = 94/236 (39%), Gaps = 62/236 (26%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +NV+ RY + NL I L L+GP+G+GK+T + +I + P+ G +
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 460 KNSHLRFARYHQHLHELLDLDISPLD---------YMLQS---FP--------------- 492
+ DI D Y++Q FP
Sbjct: 60 ID----------------GEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL 103
Query: 493 ---EVKDREEMRKIIGRYGLTGRQ--QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP 547
+ K RE +++ GL + P +LS GQ+ RV A P LLL+DEP
Sbjct: 104 KWPKEKIRERADELLALVGLDPAEFADRYP-HELSGGQQQRVGVARALAADPPLLLMDEP 162
Query: 548 TNHLDMETIDALADAINDFEGGL----VLVSHD----FRLINQVAEEIWICENGKV 595
LD T D L + + L V V+HD FRL A+ I I +NG++
Sbjct: 163 FGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRL----ADRIAIMKNGEI 214
Score = 49.2 bits (118), Expect = 2e-06
Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 22/211 (10%)
Query: 88 VKIANFSITFHGCE-LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146
++ N + + G + + + LE+ G L+G +GSGK+T + ++ NR + P +I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI-NRLIE-PTSGEI 58
Query: 147 FHLTREMPASDKSALTCVMEVDEERVRLEKL--AEQLVACEDDESQEQLMDIYDRLDDIS 204
F + + E D +R K+ Q + + E+ + + +L
Sbjct: 59 FIDGED-----------IREQDPVELR-RKIGYVIQQIGLFPHMTVEENIALVPKLLKWP 106
Query: 205 ADTAEARAANILHGLGF-TKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
+ RA +L +G E + + SGG + R+ +ARAL P LLL+DEP L
Sbjct: 107 KEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGAL 166
Query: 264 DLDACVWLEEELKTYKRIL----VIISHSQD 290
D L+EE K ++ L V ++H D
Sbjct: 167 DPITRDQLQEEFKRLQQELGKTIVFVTHDID 197
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 55.1 bits (133), Expect = 3e-08
Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 40/234 (17%)
Query: 396 PPPVIMVQNVSFRYSDDGPWI-YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS 454
P++ V +S Y GP R++ F + L +VG +G+GK+TLL I G LTP
Sbjct: 3 DKPLLSVSGLSKLY---GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD 59
Query: 455 VGMV----RKNSHL-----------RFAR-----YHQHLHELLDLDIS--------PLDY 486
G V R R R HQ+ + L + +S +
Sbjct: 60 AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAI 119
Query: 487 MLQSFPEVKDREEMRKIIGRYGL-TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545
+ + + R E + + + R P R S G + R+ A P L+ +D
Sbjct: 120 GARHYGNI--RAEAQDWLEEVEIDLDRIDDLP-RTFSGGMQQRLQIARNLVTRPRLVFMD 176
Query: 546 EPTNHLDMET----IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
EPT LD+ +D L + + +V+V+HD + +A+ + + + G+V
Sbjct: 177 EPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQV 230
Score = 50.5 bits (121), Expect = 8e-07
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 39/185 (21%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK 158
GC +D +L G G++G +GSGK+TLL + R PD + + R+ D
Sbjct: 21 GC---RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR--LTPDAGTVTYRMRDGQPRDL 75
Query: 159 SALTCVMEVDEERVRLEK-------------LAEQLVACEDDESQEQLMDIYDR-LDDIS 204
++ + ER RL + L Q+ A + E+LM I R +I
Sbjct: 76 YTMS-----EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGN--IGERLMAIGARHYGNIR 128
Query: 205 ADTAEARAANILHGLGFTKEMQQKKTKD----FSGGWRMRIALARALYVKPHLLLLDEPT 260
A+ A + L + E+ + D FSGG + R+ +AR L +P L+ +DEPT
Sbjct: 129 AE-----AQDWLEEV----EIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPT 179
Query: 261 NHLDL 265
LD+
Sbjct: 180 GGLDV 184
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 54.6 bits (132), Expect = 3e-08
Identities = 45/174 (25%), Positives = 66/174 (37%), Gaps = 31/174 (17%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH--LTREMPASDKS 159
+L D L + G+ +LG +GSGK+TLL + R V L P
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR---VEGGGTTSGQILFNGQPRKPDQ 78
Query: 160 ALTCVMEVDEERVRLEKL--AEQLVAC-------EDDESQEQLMDIYDRLDDISADTAEA 210
CV V ++ + L L E L + ++ + L D+ A
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL----ALT 134
Query: 211 RAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
R K SGG R R+++A L P +L+LDEPT+ LD
Sbjct: 135 RIGG-------------NLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175
Score = 39.2 bits (92), Expect = 0.003
Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 31/147 (21%)
Query: 430 LALVGPNGAGKSTLLNLI----------YGDLT-----PSVGMVRKN-SHLR-FARYHQH 472
+A++G +G+GK+TLL+ I G + +K +++R
Sbjct: 36 MAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95
Query: 473 L--HELLDLDISPLDYMLQ-SFPEVKDREEMRKI--IGRYGLTGRQQVCP--IRQLSDGQ 525
L E L Y P +K ++ ++ +S G+
Sbjct: 96 LTVRET-------LTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGE 148
Query: 526 KCRVVFAYLAWQAPHLLLLDEPTNHLD 552
+ RV A P +L+LDEPT+ LD
Sbjct: 149 RRRVSIAVQLLWDPKVLILDEPTSGLD 175
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 54.6 bits (132), Expect = 3e-08
Identities = 59/239 (24%), Positives = 94/239 (39%), Gaps = 48/239 (20%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148
KI + ++ E+L+ L + G + ++G NGSGKSTL + ++
Sbjct: 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHP-----SYEVTS 56
Query: 149 LTREMPASDKSALTCVMEVDEERVRL------------------EKLAEQLVACEDDESQ 190
T D +E DE R R E L L A +
Sbjct: 57 GTILFKGQDLLE----LEPDE-RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGE 111
Query: 191 EQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD-FSGGWRMRIALARALYV 249
E L D+ D L + A A LG +E + + FSGG + R + + +
Sbjct: 112 EPL-DLLDFLKLLKAKLAL---------LGMDEEFLNRSVNEGFSGGEKKRNEILQMALL 161
Query: 250 KPHLLLLDEPTNHLDLDA------CVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHL 302
+P L +LDE + LD+DA + L+ R +II+H Q LN + + +H+
Sbjct: 162 EPKLAILDEIDSGLDIDALKIVAEGI---NRLREPDRSFLIITHYQRLLNYIKPDYVHV 217
Score = 36.5 bits (85), Expect = 0.026
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGD 450
G++L + A++GPNG+GKSTL I G
Sbjct: 18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49
Score = 33.0 bits (76), Expect = 0.34
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Query: 539 PHLLLLDEPTNHLDMETIDAL---ADAINDF---EGGLVLVSHDFRLINQVAEE-IWICE 591
P L +LDE + LD IDAL A+ IN + ++++H RL+N + + + +
Sbjct: 163 PKLAILDEIDSGLD---IDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLL 219
Query: 592 NGKVTK 597
+G++ K
Sbjct: 220 DGRIVK 225
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 54.6 bits (131), Expect = 3e-08
Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 35/216 (16%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148
K N ++ + + L D +++ + L+G +G GKST L NR
Sbjct: 4 KTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCF-NR------------ 50
Query: 149 LTREMPASDKSA-LTCVMEVDEERVRLEKLA--EQLVACEDDESQEQLMDIYDRLDDI-- 203
+DK A + ++E++ + V+ + + + V + + IY+ +
Sbjct: 51 ------MNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPK 104
Query: 204 ------SADTAEARAANILHGLGFTKEMQQKKTKD---FSGGWRMRIALARALYVKPHLL 254
+ D EA + L +G +E++ K ++ SGG + R+ +ARAL +KP LL
Sbjct: 105 LHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLL 164
Query: 255 LLDEPTNHLDLDACVWLEEELK--TYKRILVIISHS 288
LLDEPT+ LD + +EE LK ++ +++++H+
Sbjct: 165 LLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHN 200
Score = 35.8 bits (82), Expect = 0.041
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGL--VLVSHDFR 578
LS GQ+ R+ A P LLLLDEPT+ LD + + + + + L ++V+H+ +
Sbjct: 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQ 202
Query: 579 LINQVAE 585
+VA+
Sbjct: 203 QGKRVAD 209
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 55.3 bits (134), Expect = 4e-08
Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 47/226 (20%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG---------- 449
+ ++NV + + +++ I+ + L+GP+G GKSTLL +I G
Sbjct: 4 LELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 450 -------DLTPS---VGMVRKNSHLRFARY-HQHLHELLDLDISPLDYMLQSFPEVKDR- 497
DL P + MV +N +A Y H ++E + L E+ R
Sbjct: 62 IDGRDVTDLPPEKRGIAMVFQN----YALYPHMTVYENI---AFGLKLRGVPKAEIDKRV 114
Query: 498 EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA----PHLLLLDEPTNHLD- 552
+E+ K++G L R+ QLS GQ+ RV A +A P + LLDEP ++LD
Sbjct: 115 KEVAKLLGLEHLLNRK----PLQLSGGQRQRVALA----RALVRKPKVFLLDEPLSNLDA 166
Query: 553 ---METIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
+ + + V+HD +A+ I + +G++
Sbjct: 167 KLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRI 212
Score = 51.5 bits (124), Expect = 6e-07
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 194 MDIYD------RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247
M +Y+ +L + + R + LG + +K SGG R R+ALARAL
Sbjct: 90 MTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-RKPLQLSGGQRQRVALARAL 148
Query: 248 YVKPHLLLLDEPTNHLDLDACVW---LEEELKTYKRIL----VIISHSQ 289
KP + LLDEP ++LD + E+K L + ++H Q
Sbjct: 149 VRKPKVFLLDEPLSNLD---AKLRVLMRSEIKKLHERLGTTTIYVTHDQ 194
Score = 38.4 bits (90), Expect = 0.009
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL 130
+++ N +F E+L+D L++ G LLG +G GKSTLL
Sbjct: 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLL 46
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 55.3 bits (134), Expect = 4e-08
Identities = 63/222 (28%), Positives = 96/222 (43%), Gaps = 51/222 (22%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI--- 144
V++ S +F G E++ + L +N G LLG +G GK+T+L ++ E P I
Sbjct: 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLD 74
Query: 145 --DIFHLTREMPASDKS--------ALTCVMEVDEE---RVRLEKLAEQLVACEDDESQE 191
DI H+ PA ++ AL M V E +R++K
Sbjct: 75 GQDITHV----PAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA----------- 119
Query: 192 QLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP 251
+I+ EA L +E Q+K SGG + R+A+ARA+ KP
Sbjct: 120 ----------EITPRVMEALRMVQL------EEFAQRKPHQLSGGQQQRVAIARAVVNKP 163
Query: 252 HLLLLDEPTNHLDLDACVWLEEELKTYKRIL----VIISHSQ 289
+LLLDE + LD ++ ELK +R L V ++H Q
Sbjct: 164 KVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ 205
Score = 46.5 bits (111), Expect = 3e-05
Identities = 48/191 (25%), Positives = 74/191 (38%), Gaps = 61/191 (31%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLT 452
P++ ++ +S + DG + N +DL L L+GP+G GK+T+L LI G T
Sbjct: 12 SPLVELRGISKSF--DGKEVISN----LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET 65
Query: 453 PSVGMVRKNSHLRFARYHQHLHELLDLDIS-------PLDYMLQS---FP---------- 492
P G + + DI+ ++ + QS FP
Sbjct: 66 PDSGRIMLDGQ----------------DITHVPAENRHVNTVFQSYALFPHMTVFENVAF 109
Query: 493 ----------EVKDR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541
E+ R E +++ R+ QLS GQ+ RV A P +
Sbjct: 110 GLRMQKTPAAEITPRVMEALRMVQLEEFAQRK----PHQLSGGQQQRVAIARAVVNKPKV 165
Query: 542 LLLDEPTNHLD 552
LLLDE + LD
Sbjct: 166 LLLDESLSALD 176
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 54.1 bits (130), Expect = 4e-08
Identities = 53/197 (26%), Positives = 75/197 (38%), Gaps = 29/197 (14%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP----SVGM 457
++NVS R G + N+ F I + L+GP+G GKSTLL+ + G L + +
Sbjct: 5 LKNVSLRL--PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGEL 62
Query: 458 VRKNSHLRFARYHQHLHELLDLDISPLDYM-------LQSFPEVKDREEMRKI---IGRY 507
L Q +L D ++ +K + R
Sbjct: 63 WLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERS 122
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF- 566
GL G P LS GQ+ RV P LLLDEP + LD+ AL D +
Sbjct: 123 GLDGAFHQDP-ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV----ALRDQFRQWV 177
Query: 567 -----EGGL--VLVSHD 576
G+ V V+HD
Sbjct: 178 FSEVRAAGIPTVQVTHD 194
Score = 46.0 bits (109), Expect = 2e-05
Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 25/181 (13%)
Query: 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHL 149
+ N S+ G LL + + G L+G +G GKSTLL+ + L
Sbjct: 5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIG------------AL 52
Query: 150 TREMPASDKSALTCVMEVDEERVRLEKLAEQLVAC--EDDESQEQLMDIYDRLDDISADT 207
+ + + + ++E+R+ + A++ + +D L + L + A
Sbjct: 53 AGQFSCTGE------LWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATL 106
Query: 208 ---AEARAAN-ILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
A AAN L G + SGG R R+AL RAL +P LLLDEP + L
Sbjct: 107 KGNARRNAANAALERSGLD-GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRL 165
Query: 264 D 264
D
Sbjct: 166 D 166
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 54.9 bits (132), Expect = 4e-08
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 35/159 (22%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFA-------- 467
+ +N+ I+ LA+ G G+GK++LL LI G+L PS G ++ + + F+
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111
Query: 468 -----------RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVC 516
Y ++ ++ + + L+ + FPE KD ++G G+T
Sbjct: 112 GTIKENIIFGVSYDEYRYKSV-VKACQLEEDITKFPE-KD----NTVLGEGGIT------ 159
Query: 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
LS GQ+ R+ A ++ L LLD P +LD+ T
Sbjct: 160 ----LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194
Score = 50.2 bits (120), Expect = 1e-06
Identities = 59/210 (28%), Positives = 85/210 (40%), Gaps = 54/210 (25%)
Query: 91 ANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDIFHL 149
+N + G +L++ L++ G + G GSGK++LL +LG E P I H
Sbjct: 43 SNLCL--VGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHS 97
Query: 150 TRE---------MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRL 200
R MP + K + + DE R + + AC+ +E
Sbjct: 98 GRISFSSQFSWIMPGTIKENIIFGVSYDEYRYK-----SVVKACQLEE------------ 140
Query: 201 DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260
DI+ N + G G SGG R RI+LARA+Y L LLD P
Sbjct: 141 -DITK---FPEKDNTVLGEGGI---------TLSGGQRARISLARAVYKDADLYLLDSPF 187
Query: 261 NHLDL-------DACVWLEEELKTYKRILV 283
+LD+ ++CV KT RILV
Sbjct: 188 GYLDVFTEKEIFESCVCKLMANKT--RILV 215
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 54.4 bits (131), Expect = 5e-08
Identities = 58/182 (31%), Positives = 75/182 (41%), Gaps = 25/182 (13%)
Query: 92 NFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTR 151
N S G LL L G+ GL+G NGSGKSTLL +LG + P I L
Sbjct: 16 NVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI----LLD 71
Query: 152 EMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDI--------YDRLDDI 203
P S+ +V L +QL A E +E L+ I R
Sbjct: 72 AQPLESWSSKAFARKV-------AYLPQQLPAAEGMTVRE-LVAIGRYPWHGALGRFG-- 121
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
+AD + A L GL K + + SGG R R +A + LLLDEPT+ L
Sbjct: 122 AADREKVEEAISLVGL---KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSAL 178
Query: 264 DL 265
D+
Sbjct: 179 DI 180
Score = 48.2 bits (115), Expect = 5e-06
Identities = 47/150 (31%), Positives = 66/150 (44%), Gaps = 22/150 (14%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-------RFARYHQHL---------- 473
L+G NG+GKSTLL ++ PS G + ++ FAR +L
Sbjct: 41 GLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100
Query: 474 --HELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVF 531
EL+ + P L F DRE++ + I GL + LS G++ R
Sbjct: 101 TVRELVAIGRYPWHGALGRF-GAADREKVEEAISLVGLKPLAHRL-VDSLSGGERQRAWI 158
Query: 532 AYLAWQAPHLLLLDEPTNHLDM-ETIDALA 560
A L Q LLLDEPT+ LD+ +D LA
Sbjct: 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLA 188
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 54.4 bits (131), Expect = 5e-08
Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 17/205 (8%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLH-ELLDLDISPLDYML 488
+ LVG NG+GKSTL N+I G L+P+VG V +N + L +L ++ +
Sbjct: 53 IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLC 112
Query: 489 QSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
F + + KII + G P+++ S G + ++ F+ P +L++DE
Sbjct: 113 MGFKRKEIKAMTPKII-EFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAL 171
Query: 549 NHLDMETIDALADAINDFEGG---LVLVSHDFRLINQVAEEI-WICENGKVT-------- 596
+ D D I +F+ + VSH+ + Q +I WI E GK+
Sbjct: 172 SVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWI-EGGKLKDYGELDDV 230
Query: 597 --KWEGNILDYKETLRAKVLKEKNK 619
K+E + D+K+ +A+ + +NK
Sbjct: 231 LPKYEAFLNDFKKKSKAEQKEFRNK 255
Score = 44.0 bits (104), Expect = 1e-04
Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 39/247 (15%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L D L+ G GL+G+NGSGKSTL ++G P +D ++
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD------------RNGEV 87
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFT 222
V+ + L+ QL E+ E + M + +I A T + + F+
Sbjct: 88 SVIAISA------GLSGQLTGIENIEFKMLCMGFKRK--EIKAMTPKI--------IEFS 131
Query: 223 K--EMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD---LDACVWLEEELKT 277
+ E + K +S G R ++ + + V P +L++DE + D C+ E K
Sbjct: 132 ELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE 191
Query: 278 YKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG------NYEAFCKTRLELLENQMKQ 331
+ + +SH+ + CT I ++ KLK YG YEAF + + + K+
Sbjct: 192 QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKKKSKAEQKE 251
Query: 332 YNWEQDQ 338
+ + D+
Sbjct: 252 FRNKLDE 258
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 54.2 bits (130), Expect = 5e-08
Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 36/223 (16%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS---- 454
+I ++NVS+ Y D P + N+ I + ++G NG+GKSTL + G L P
Sbjct: 1 MIRLENVSYSYPDGTPAL-ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 455 -------------------VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVK 495
VG+V +N +F + + E DL P + L P ++
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV--GRTVEE--DLAFGPENLCL---PPIE 112
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
R+ + + + GL + P + LS GQ V A + P L+ DE T+ LD ++
Sbjct: 113 IRKRVDRALAEIGLEKYRHRSP-KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171
Query: 556 IDALADAINDF-EGG--LVLVSHDFRLINQVAEEIWICENGKV 595
A+ + I E G +V ++H+ + A+ I + + GK+
Sbjct: 172 GIAVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKI 213
Score = 44.6 bits (105), Expect = 8e-05
Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 28/234 (11%)
Query: 88 VKIANFSITF-HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146
+++ N S ++ G L++ L + G G++G NGSGKSTL L P +
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV-- 59
Query: 147 FHLTREMPASDKSALTCVMEV------DEERVRLEKLAEQLVACEDDESQEQLMDIYDRL 200
L + D S L + ++ + E + + E+ +A + ++I R+
Sbjct: 60 --LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRV 117
Query: 201 DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260
D A+ GL + + + K SGG +ALA L ++P L+ DE T
Sbjct: 118 DRALAEI----------GLE---KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVT 164
Query: 261 NHLDLDACVWLEEELKTYKR---ILVIISHSQDFLNGVCTNIIHLDKRKLKYYG 311
+ LD D+ + + E +K +V I+H+ + L+ II +D+ K+ G
Sbjct: 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEG 217
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 55.0 bits (132), Expect = 5e-08
Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 17/194 (8%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
++D L + G + ++GL+GSGKST++ +L NR + TR D +
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLL-NR---------LIEPTRGQVLIDGVDIA 93
Query: 163 CVMEVDEERVRLEKLAE--QLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLG 220
+ + + VR +K+A Q A + L I+A+ +A + L +G
Sbjct: 94 KISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVG 153
Query: 221 FTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL----K 276
+ + SGG R R+ LARAL + P +LL+DE + LD +++EL
Sbjct: 154 L-ENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212
Query: 277 TYKRILVIISHSQD 290
++R +V ISH D
Sbjct: 213 KHQRTIVFISHDLD 226
Score = 44.3 bits (104), Expect = 1e-04
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 25/191 (13%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMV-------------------RKNSHLRFARYH 470
++G +G+GKST++ L+ + P+ G V RK + F +
Sbjct: 57 FVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116
Query: 471 QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVV 530
H + LD + L + RE+ + + GL P +LS G + RV
Sbjct: 117 LMPH-MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-DELSGGMRQRVG 174
Query: 531 FAYLAWQAPHLLLLDEPTNHLD----METIDALADAINDFEGGLVLVSHDFRLINQVAEE 586
A P +LL+DE + LD E D L + +V +SHD ++ +
Sbjct: 175 LARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDR 234
Query: 587 IWICENGKVTK 597
I I +NG+V +
Sbjct: 235 IAIMQNGEVVQ 245
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 53.4 bits (129), Expect = 6e-08
Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 39/217 (17%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
V++ N + F L D L++ G LLG +G GK+T L ++ E P I+
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIY 58
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACE-DDESQEQLMDIYD------RL 200
+ V ++ +A + + M +YD +L
Sbjct: 59 -------------------IGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKL 99
Query: 201 DDISADTAEAR---AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
+ D + R A +L + + +K K SGG R R+AL RA+ +P + L+D
Sbjct: 100 RKVPKDEIDERVREVAELLQ----IEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD 155
Query: 258 EPTNHLDLDACVWLEEELKTYKRIL----VIISHSQD 290
EP ++LD V + ELK ++ L + ++H Q
Sbjct: 156 EPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192
Score = 49.9 bits (120), Expect = 7e-07
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 37/176 (21%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG---------- 449
+ ++NV+ R+ +L I + L+GP+G GK+T L +I G
Sbjct: 1 VELENVTKRF--GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 450 -------DLTPS---VGMVRKNSHLRFARY-HQHLHELLDLDIS-PLDYMLQSFPEVKDR 497
DL P + MV +N +A Y H +++ +I+ L E+ +R
Sbjct: 59 IGGRDVTDLPPKDRDIAMVFQN----YALYPHMTVYD----NIAFGLKLRKVPKDEIDER 110
Query: 498 -EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
E+ +++ L R+ +QLS GQ+ RV + P + L+DEP ++LD
Sbjct: 111 VREVAELLQIEHLLDRKP----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 53.7 bits (129), Expect = 6e-08
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 33/184 (17%)
Query: 92 NFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTR 151
N + + G +++D L +N G GLLG NG+GK+T F++
Sbjct: 8 NLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTT-----------------TFYMVV 50
Query: 152 EMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQE----QLMDIYDRL------- 200
+ D + +D+E + L L + QE + + +YD L
Sbjct: 51 GIVPRDAGNII----IDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR 106
Query: 201 DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260
DD+SA+ E RA ++ ++ + SGG R R+ +ARAL P +LLDEP
Sbjct: 107 DDLSAEQREDRANELMEEFHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPF 165
Query: 261 NHLD 264
+D
Sbjct: 166 AGVD 169
Score = 32.9 bits (75), Expect = 0.37
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 18/184 (9%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS--------HLRFARYHQHLHELLDL-- 479
+ L+GPNGAGK+T ++ G + G + + H R R +L + +
Sbjct: 32 VGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFR 91
Query: 480 DISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQ-----LSDGQKCRVVFAYL 534
+S D ++ D ++ L + +R LS G++ RV A
Sbjct: 92 RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARA 151
Query: 535 AWQAPHLLLLDEPTNHLD-METID--ALADAINDFEGGLVLVSHDFRLINQVAEEIWICE 591
P +LLDEP +D + ID + + + D G+++ H+ R V E +I
Sbjct: 152 LAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVS 211
Query: 592 NGKV 595
G +
Sbjct: 212 QGHL 215
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 53.2 bits (128), Expect = 6e-08
Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 33/175 (18%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I V+N+S RY+ D P + +N+ F + ++ +VG GAGKSTL+ ++ L G +
Sbjct: 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE 66
Query: 460 KN----SHLRFARYHQHLHELLD-LDISPLDYMLQS---------FPEVKDREEMRKI-I 504
+ S + L +L L I P D L S F E D E + +
Sbjct: 67 IDGIDISTIP-------LEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRV 119
Query: 505 GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559
GL LS GQ+ + A + P +L+LDE T +D T DAL
Sbjct: 120 SEGGL----------NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT-DAL 163
Score = 48.6 bits (116), Expect = 2e-06
Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 47/240 (19%)
Query: 83 PKSRDVKIANFSITF--HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPV 140
P+ ++++ N S+ + +L++ ++ G + G++G G+GKSTL+ L
Sbjct: 2 PEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE 61
Query: 141 PDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDE-----SQEQLMD 195
I+I D +D + LE L L D + +D
Sbjct: 62 EGKIEI----------D--------GIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLD 103
Query: 196 IYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLL 255
+D D E A + G + S G R + LARAL +P +L+
Sbjct: 104 PFDEYSD-----EEIYGALRVSEGG----------LNLSQGQRQLLCLARALLKRPRVLV 148
Query: 256 LDEPTNHLDLDACVWLEEELKT--YKRILVIISHSQDFLNGV--CTNIIHLDKRKLKYYG 311
LDE T +D +++ ++ ++ I+H L + I+ +D ++K Y
Sbjct: 149 LDEATASIDYATDALIQKTIREEFTNSTILTIAHR---LRTIIDYDKILVMDAGEVKEYD 205
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 53.2 bits (128), Expect = 7e-08
Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR----------KNSHLRFAR 468
G++L + ++L+G +G GKSTLLNLI G P+ G V + + F
Sbjct: 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQN 62
Query: 469 YH----QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDG 524
Y + E + L + D +L + + R + + I GLT QLS G
Sbjct: 63 YSLLPWLTVRENIALAV---DRVLPDLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGG 118
Query: 525 QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAI----NDFEGGLVLVSHD 576
K RV A P +LLLDEP LD T L + + + +++V+HD
Sbjct: 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
Score = 53.2 bits (128), Expect = 8e-08
Identities = 51/191 (26%), Positives = 77/191 (40%), Gaps = 52/191 (27%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLL-------------AVLGNREV--PVPDHIDIF 147
L+ L + G L+G +G GKSTLL +L +++ P PD + +F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 148 H---LTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDIS 204
L + + AL VD L K + +++ + +
Sbjct: 61 QNYSLLPWLTVRENIALA----VDRVLPDLSK-----------SERRAIVE--EHIA--- 100
Query: 205 ADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
L GL E K+ SGG + R+A+ARAL ++P +LLLDEP LD
Sbjct: 101 -----------LVGLT---EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146
Query: 265 LDACVWLEEEL 275
L+EEL
Sbjct: 147 ALTRGNLQEEL 157
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 54.0 bits (130), Expect = 7e-08
Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 46/230 (20%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS---- 454
++ ++VSF Y D ++ F I + AL+G NG+GKST+ LI G L P
Sbjct: 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 455 ---------------------VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPE 493
VG+V +N +Q + + D++ + L++
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPD------NQFVGATVGDDVA---FGLEN--R 113
Query: 494 VKDREEMRKIIGR----YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
R EM KI+ G+ P LS GQK RV A + P +++LDE T+
Sbjct: 114 AVPRPEMIKIVRDVLADVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDESTS 172
Query: 550 HLDMETIDALADAINDF--EGGLVLVS--HDFRLINQVAEEIWICENGKV 595
LD + + I + L ++S HD N A+++ + ++GK+
Sbjct: 173 MLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKL 221
Score = 43.2 bits (102), Expect = 2e-04
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 213 ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA---CV 269
++L +G + + + SGG + R+A+A L V+P +++LDE T+ LD +
Sbjct: 125 RDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQIL 183
Query: 270 WLEEELKTYKRILVI-ISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRL 322
L +LK + VI I+H D N ++ LD KL G E F K +
Sbjct: 184 KLIRKLKKKNNLTVISITHDIDEANMA-DQVLVLDDGKLLAQGSPVEIFSKVEM 236
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 54.2 bits (131), Expect = 8e-08
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTN 261
+SA +A ++ +G E + FSGG R RIA+ARAL + P +++ DEP +
Sbjct: 124 SLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVS 183
Query: 262 HLD-------LDACVWLEEELKT-YKRILVIISH 287
LD L+ + L++EL Y V ISH
Sbjct: 184 ALDVSVQAQVLNLMMDLQQELGLSY----VFISH 213
Score = 33.0 bits (76), Expect = 0.45
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 522 SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA-----LADAINDFEGGLVLVSHD 576
S GQ+ R+ A P +++ DEP + LD+ ++ A + D + V +SHD
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDV-SVQAQVLNLMMDLQQELGLSYVFISHD 214
Query: 577 FRLINQVAEEI 587
++ +A+E+
Sbjct: 215 LSVVEHIADEV 225
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 53.3 bits (128), Expect = 9e-08
Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 35/183 (19%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK 158
GC +D +L G G++G +GSGKSTLL L R P D T M + +
Sbjct: 18 GC---RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP-----DHGTATYIMRSGAE 69
Query: 159 SALTCVMEVDEERVR-----------LEKLAEQLVACEDDESQEQLMDIYDR-LDDISAD 206
L + E + R+ + L ++ A + E+LM I R +I A
Sbjct: 70 LELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGAN--IGERLMAIGARHYGNIRA- 126
Query: 207 TAEARAANILHGLGFTKEMQQKKTKD----FSGGWRMRIALARALYVKPHLLLLDEPTNH 262
TA+ + E+ + D FSGG + R+ +AR L +P L+ +DEPT
Sbjct: 127 TAQDWLEEV--------EIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGG 178
Query: 263 LDL 265
LD+
Sbjct: 179 LDV 181
Score = 52.5 bits (126), Expect = 2e-07
Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 40/233 (17%)
Query: 397 PPVIMVQNVSFRYSDDGPWI-YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
P++ V +S Y G R++ F + L +VG +G+GKSTLL + G L P
Sbjct: 1 KPLLQVSGLSKSY---GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH 57
Query: 456 GMVRKNS---------------HLRFAR-----YHQHLHELLDLDIS--------PLDYM 487
G R R HQ+ + L + +S +
Sbjct: 58 GTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG 117
Query: 488 LQSFPEVKDREEMRKIIGRYGL-TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546
+ + + R + + + R P R S G + R+ A P L+ +DE
Sbjct: 118 ARHYGNI--RATAQDWLEEVEIDPTRIDDLP-RAFSGGMQQRLQIARNLVTRPRLVFMDE 174
Query: 547 PTNHLDMET----IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
PT LD+ +D L + D +++V+HD + +A+ + + + G+V
Sbjct: 175 PTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV 227
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 54.7 bits (132), Expect = 1e-07
Identities = 55/241 (22%), Positives = 93/241 (38%), Gaps = 56/241 (23%)
Query: 394 KIPPPV---IMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY- 448
+P P+ I + V+F Y + L + +ALVGP+GAGKSTL L+
Sbjct: 329 TLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLR 388
Query: 449 ---------------------GDLTPSVGMVRKNSHL---------RFARYHQHLHELLD 478
+L + +V ++ L R+ R E+
Sbjct: 389 FYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEA 448
Query: 479 -LDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
+ + + PE D +G G+T LS GQ+ R+ A +
Sbjct: 449 AARAAHAHEFISALPEGYDTY-----LGERGVT----------LSGGQRQRIAIARAILK 493
Query: 538 APHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRLIN-QVAEEIWICENGK 594
+LLLDE T+ LD E+ + A+ G ++++H RL A+ I + + G+
Sbjct: 494 DAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAH--RLATVLKADRIVVMDQGR 551
Query: 595 V 595
+
Sbjct: 552 I 552
Score = 52.8 bits (127), Expect = 4e-07
Identities = 48/171 (28%), Positives = 70/171 (40%), Gaps = 27/171 (15%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L L + G L+G +G+GKSTL +L P I + D L
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILL----------DGVDL- 404
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDI-YDRLDDISADTAEARAANIL-HGLG 220
++ E R R+ + + V + + +I Y R D A E AA H
Sbjct: 405 RQLDPAELRARMALVPQDPVLF----AASVMENIRYGRPD---ATDEEVEAAARAAHAHE 457
Query: 221 FTKEMQQ-------KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
F + + ++ SGG R RIA+ARA+ +LLLDE T+ LD
Sbjct: 458 FISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALD 508
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 53.1 bits (127), Expect = 1e-07
Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 16/180 (8%)
Query: 117 GLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEK 176
L+G +G GKST L L NR + D I+ +T E+ ++ M++ E R +
Sbjct: 34 ALIGPSGCGKSTFLRCL-NR---MNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGM 89
Query: 177 LAEQ-----LVACEDDESQEQLMDIYDR-LDDISADTAEARAANILHGLGFTKEMQQKKT 230
+ +Q ++ ++ + D+ L D + + +AA TK+ +
Sbjct: 90 VFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE----TKDNLDRNA 145
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISHS 288
+ FSGG + RI +ARAL V+P ++LLDEPT+ LD + +EE L K ++++H+
Sbjct: 146 QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHN 205
Score = 36.9 bits (85), Expect = 0.018
Identities = 59/267 (22%), Positives = 104/267 (38%), Gaps = 59/267 (22%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNL-------- 446
+I ++V Y + Y L GI LD AL+GP+G GKST L
Sbjct: 4 IISAKDVHLSYGN-----YEALH-GISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDI 57
Query: 447 ---------------IYG------DLTPSVGMV-RKNSHLRFARYHQHLHELLDLDISPL 484
IYG +L VGMV ++ + F+ Y + L +
Sbjct: 58 ENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDK 117
Query: 485 DYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544
+ + Q EE K + T + S GQ+ R+ A P ++LL
Sbjct: 118 ELIDQRV------EESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLL 171
Query: 545 DEPTNHLD----METIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
DEPT+ LD E + L + + + ++V+H+ + +++++ N G
Sbjct: 172 DEPTSALDPISSSEIEETLMELKHQYT--FIMVTHNLQQAGRISDQTAFLMN-------G 222
Query: 601 NILDYKETLRAKVLKEKNKSAAVSNGK 627
++++ T + +K ++ NG+
Sbjct: 223 DLIEAGPTEEMFIAPKKQITSDYLNGR 249
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 52.9 bits (127), Expect = 1e-07
Identities = 56/247 (22%), Positives = 102/247 (41%), Gaps = 29/247 (11%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
V+ ++ + F +L + G + L+G +GSGKST+L +L E I +
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 148 -HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLV---------ACEDDESQEQLMDIY 197
MP + ++ DE+ +R + +V D E +
Sbjct: 61 GEQLYHMPGRNGP----LVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPV--- 113
Query: 198 DRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
+ ++ AE RA +L +G + + SGG + R+A+ARAL ++P ++L D
Sbjct: 114 -LVLGMARAEAEKRAMELLDMVGLADKADHMPAQ-LSGGQQQRVAIARALAMRPKVMLFD 171
Query: 258 EPTNHLDLDACVWLEEELKTYKRI-------LVIISHSQDFLNGVCTNIIHLDKRKLKYY 310
E T+ LD + E L +R+ +++++H F + DK ++
Sbjct: 172 EVTSALDPELV---GEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228
Query: 311 GGNYEAF 317
G E F
Sbjct: 229 GKPDEIF 235
Score = 52.5 bits (126), Expect = 2e-07
Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 39/213 (18%)
Query: 420 LEFGIDLDTRLALVGPNGAGKSTLLNLIY------------------------GDLTPS- 454
L F + ++AL+GP+G+GKST+L ++ G L P+
Sbjct: 19 LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78
Query: 455 ---VGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTG 511
+ +R + F ++ H+ + +++ ++ + + +++ GL
Sbjct: 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD 138
Query: 512 RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----E 567
+ P QLS GQ+ RV A P ++L DE T+ LD E + + + I +
Sbjct: 139 KADHMPA-QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHD 197
Query: 568 GGLVLVSHDFRLINQVAEEIW------ICENGK 594
++LV+H+ + A+ + I E GK
Sbjct: 198 LTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 53.1 bits (128), Expect = 1e-07
Identities = 47/174 (27%), Positives = 71/174 (40%), Gaps = 25/174 (14%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+ +N++ Y I +L + AL+GPNG GKSTLL LTP G V
Sbjct: 3 LRTENLTVGYGTKR--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVF 60
Query: 460 KN-------SHLRFARY-----HQHL-------HELLDLDISPLDYM-LQSFPEVKDREE 499
S + AR HL EL+ SP ++ L +D
Sbjct: 61 LGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSP--WLSLWGRLSAEDNAR 118
Query: 500 MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM 553
+ + + + + + LS GQ+ R A + Q ++LLDEPT +LD+
Sbjct: 119 VNQAMEQTRINHLADR-RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI 171
Score = 47.7 bits (114), Expect = 7e-06
Identities = 58/227 (25%), Positives = 90/227 (39%), Gaps = 31/227 (13%)
Query: 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146
++ N ++ + +L D L L G+ L+G NG GKSTLL P + +
Sbjct: 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61
Query: 147 FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQL-------MDIYDR 199
+ P S S+ + RL L + + E +E + + ++ R
Sbjct: 62 ----GDKPISMLSS-------RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGR 110
Query: 200 LDDISADTAE-ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDE 258
L D A +A + ++ D SGG R R LA L ++LLDE
Sbjct: 111 LSA--EDNARVNQAMEQTR----INHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDE 164
Query: 259 PTNHLDLDACVWLEE---ELKTYKRILVIISHSQDFLNGVCTNIIHL 302
PT +LD++ V L EL T + +V + H LN HL
Sbjct: 165 PTTYLDINHQVELMRLMRELNTQGKTVVTVLHD---LNQASRYCDHL 208
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 54.3 bits (131), Expect = 1e-07
Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 31/183 (16%)
Query: 430 LALVGPNGAGKSTLLNLIYGDL-TPSVGMVR------------KNSHLR-------FARY 469
+A+VG +G+GKSTL+N I G L P+ G R + LR F RY
Sbjct: 37 VAIVGASGSGKSTLMN-ILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRY 95
Query: 470 H--QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKC 527
H HL ++++ P Y + ++++ R GL R + P QLS GQ+
Sbjct: 96 HLLSHLTAAQNVEV-PAVY--AGLERKQRLLRAQELLQRLGLEDRVEYQP-SQLSGGQQQ 151
Query: 528 RVVFAYLAWQAPHLLLLDEPTNHLDM---ETIDALADAINDFEGGLVLVSHDFRLINQVA 584
RV A ++L DEPT LD E + A+ + D +++V+HD ++ Q A
Sbjct: 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQ-A 210
Query: 585 EEI 587
E +
Sbjct: 211 ERV 213
Score = 47.0 bits (112), Expect = 3e-05
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 33/176 (18%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
E+L+ L++ G ++G +GSGKSTL+ +LG L + + + A
Sbjct: 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILG-------------CLDKPTSGTYRVA 68
Query: 161 LTCVMEVDEE---RVRLE---------KLAEQLVACEDDESQEQLMDIYDRLDDISADTA 208
V +D + ++R E L L A Q +++ +
Sbjct: 69 GQDVATLDADALAQLRREHFGFIFQRYHLLSHLTA-------AQNVEVPAVYAGLERKQR 121
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
RA +L LG ++ + ++ SGG + R+++ARAL ++L DEPT LD
Sbjct: 122 LLRAQELLQRLGLEDRVEYQPSQ-LSGGQQQRVSIARALMNGGQVILADEPTGALD 176
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 53.9 bits (130), Expect = 1e-07
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL----VIISHSQ 289
SGG + R+ALARAL P LLLLDEP + LD L E++ +R L ++++H Q
Sbjct: 136 SGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ 195
Query: 290 D 290
+
Sbjct: 196 E 196
Score = 51.6 bits (124), Expect = 6e-07
Identities = 55/193 (28%), Positives = 80/193 (41%), Gaps = 59/193 (30%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLD 478
I L + + L+GP+G GK+TLL +I G + G + +
Sbjct: 22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGR--------------- 66
Query: 479 LDISPL-----DY--MLQS---FP--------------------EVKDR-EEMRKIIGRY 507
DI+ L DY + QS FP EV +R E+ ++G
Sbjct: 67 -DITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVG-- 123
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFE 567
L G ++ P QLS GQ+ RV A +P LLLLDEP + LD + L I +
Sbjct: 124 -LPGSERKYP-GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181
Query: 568 GGL----VLVSHD 576
L ++V+HD
Sbjct: 182 RRLGVTTIMVTHD 194
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 52.4 bits (126), Expect = 2e-07
Identities = 64/212 (30%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+++ VS RY + + L+ I +A+VG +G GKSTLL L+ G TPS G +
Sbjct: 13 LLLNAVSKRYGERT--VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL 70
Query: 460 KNSHLRFARYHQHLHELLDLDISPL--DYMLQSFPEVKD----------REEMRKIIGRY 507
+ L E + D + D L + +V D R+ + +
Sbjct: 71 AGTAP--------LAEARE-DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV 121
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF- 566
GL R P LS GQK RV A P LLLLDEP LD T + D I
Sbjct: 122 GLADRANEWPA-ALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLW 180
Query: 567 -EGG--LVLVSHDFRLINQVAEEIWICENGKV 595
+ G ++LV+HD +A+ + + E GK+
Sbjct: 181 QQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
Score = 46.6 bits (111), Expect = 2e-05
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG + R+ALARAL +P LLLLDEP LD
Sbjct: 135 SGGQKQRVALARALIHRPGLLLLDEPLGALD 165
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 53.9 bits (130), Expect = 2e-07
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSV---------GMVRKNSHLR----FARYHQ----H 472
LA++G +GAGK+TL+N + V GM +R + +
Sbjct: 54 LAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPT 113
Query: 473 LHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGL-----TGRQQVCPIRQLSDGQKC 527
L L M + + + RE + +++ GL T ++ LS G++
Sbjct: 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERK 173
Query: 528 RVVFAYLAWQAPHLLLLDEPTNHLD 552
R+ FA P LL DEPT+ LD
Sbjct: 174 RLAFASELLTDPPLLFCDEPTSGLD 198
Score = 50.8 bits (122), Expect = 2e-06
Identities = 48/217 (22%), Positives = 80/217 (36%), Gaps = 36/217 (16%)
Query: 118 LLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCV----MEVDEERVR 173
++G +G+GK+TL+ L R S + ++ E R
Sbjct: 56 VMGSSGAGKTTLMNALAFRS---------------PKGVKGSGSVLLNGMPIDAKEMRAI 100
Query: 174 LEKLAEQLVACEDDESQEQLMDIYDRL---DDISADTAEARAANILHGLGFTKEMQQK-- 228
+ + + +E LM L ++ R +L LG K +
Sbjct: 101 SAYVQQDDLFIPTLTVREHLM-FQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 229 ---KTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDAC---VWLEEELKTYKRIL 282
+ K SGG R R+A A L P LL DEPT+ LD V + + L + +
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 283 VIISH---SQDFLNGVCTNIIHLDKRKLKYYGGNYEA 316
+ H S+ F + II + + ++ Y G +A
Sbjct: 220 ICTIHQPSSELF--ELFDKIILMAEGRVAYLGSPDQA 254
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 52.4 bits (126), Expect = 2e-07
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 31/185 (16%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN-------SHLRFARYHQHLHELLDLDIS 482
L LVGPNG GKST L ++ G L P++G R + + +LL+ D+
Sbjct: 29 LGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVK 88
Query: 483 P------LDYMLQSFP--------EVKDREEMRKIIGRYGLTG---RQQVCPIRQLSDGQ 525
+D + ++ + +R ++ +++ + L R I QLS G+
Sbjct: 89 VIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRN----IDQLSGGE 144
Query: 526 KCRVVFAYLAWQAPHLLLLDEPTNHLDME---TIDALADAINDFEGGLVLVSHDFRLINQ 582
RV A + DEP+++LD++ L + + + +++V HD +++
Sbjct: 145 LQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDY 204
Query: 583 VAEEI 587
+++ I
Sbjct: 205 LSDYI 209
Score = 34.3 bits (79), Expect = 0.14
Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 42/193 (21%)
Query: 112 CGRRYGLLGLNGSGKSTLLAVLGNREVP-------VPDHIDIFHLTR---------EMPA 155
G+ GL+G NG GKST L +L + P PD +I R ++
Sbjct: 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLE 84
Query: 156 SDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANI 215
D + VD ++ +L+ +D+ + +L ++ D+L+
Sbjct: 85 GDVKVIVKPQYVDLIPKAVKGKVGELLKKKDE--RGKLDELVDQLE-------------- 128
Query: 216 LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD----LDACVWL 271
+ + + SGG R+A+A AL DEP+++LD L+A +
Sbjct: 129 ------LRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLI 182
Query: 272 EEELKTYKRILVI 284
E + +LV+
Sbjct: 183 RELAEDDNYVLVV 195
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 53.5 bits (129), Expect = 2e-07
Identities = 41/193 (21%), Positives = 80/193 (41%), Gaps = 43/193 (22%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS-------HLRFARYHQHLHELLDLDIS 482
+ ++GPNG GKST L ++ G+L P++G R + +L + ++
Sbjct: 103 VGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELR 162
Query: 483 PL------DY-----------MLQS------FPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
+ D +L+ F EV +R + ++ R +
Sbjct: 163 AVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDR----------DVS 212
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLV-SHD 576
+LS G+ RV A + + DEP+++LD+ A I + +G V+V HD
Sbjct: 213 ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD 272
Query: 577 FRLINQVAEEIWI 589
+++ +++ + I
Sbjct: 273 LAVLDYLSDFVHI 285
Score = 52.3 bits (126), Expect = 5e-07
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLR--------FARYHQHLHELLDLDI 481
+ ++GPNG GK+T + L+ G + P G L+ Y + +LL
Sbjct: 370 IGILGPNGIGKTTFVKLLAGVIKPDEGSEED---LKVSYKPQYISPDYDGTVEDLL-RSA 425
Query: 482 SPLDYMLQSF-PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPH 540
+ F E+ + ++ R P+ +LS G+ RV A +
Sbjct: 426 IRSAFGSSYFKTEIVKPLNLEDLLER----------PVDELSGGELQRVAIAAALSREAD 475
Query: 541 LLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEEI 587
L LLDEP+ +LD+E +A I F E ++V HD +I+ V++ +
Sbjct: 476 LYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRL 526
Score = 40.7 bits (96), Expect = 0.002
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 41/175 (23%)
Query: 117 GLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEK 176
G+LG NG GK+T + +L P E EE +++
Sbjct: 371 GILGPNGIGKTTFVKLLAGVIKPD-------------------------EGSEEDLKVS- 404
Query: 177 LAEQLVACEDDESQEQLMD--IYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFS 234
Q ++ + D + E L+ I T I+ L +++ + S
Sbjct: 405 YKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKT------EIVKPLNLEDLLERP-VDELS 457
Query: 235 GGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQ 289
GG R+A+A AL + L LLDEP+ +LD +E+ + K I I +++
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLD------VEQRIIVAKVIRRFIENNE 506
Score = 33.4 bits (77), Expect = 0.41
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD----LDACVWLEEELKTYKRILV 283
+ + SGG R+A+A AL + DEP+++LD L+A + E + K ++V
Sbjct: 209 RDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIV 268
Query: 284 I 284
+
Sbjct: 269 V 269
Score = 29.2 bits (66), Expect = 9.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVP 139
G+ G+LG NG GKST L +L P
Sbjct: 100 GKVVGILGPNGIGKSTALKILAGELKP 126
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 53.1 bits (128), Expect = 3e-07
Identities = 61/211 (28%), Positives = 87/211 (41%), Gaps = 42/211 (19%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
P I++ N Y +D P I NL + ++ +VGPNGAGKSTLL+LI GD
Sbjct: 259 PRIVLNNGVVSY-NDRP-ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYS- 315
Query: 458 VRKNSHLRFARYH----------QH-------LHELLDLDISPLDYMLQSF-------PE 493
N F R +H LH + S + +L F
Sbjct: 316 ---NDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQA 372
Query: 494 VKDREEM--RKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551
V DR++ ++ + G+ R P LS GQ+ + + P LL+LDEP L
Sbjct: 373 VSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGL 432
Query: 552 D-------METIDALADAINDFEGGLVLVSH 575
D +D L I++ E L+ VSH
Sbjct: 433 DPLNRQLVRRFVDVL---ISEGETQLLFVSH 460
Score = 41.5 bits (98), Expect = 0.001
Identities = 50/202 (24%), Positives = 78/202 (38%), Gaps = 38/202 (18%)
Query: 402 VQNVSFRYSDDGPWIYRNL---EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
+ +FR SD + L ++ A VG NG+GKS L + G+L G
Sbjct: 6 ISQGTFRLSDT-----KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGE- 59
Query: 459 RKNSHLRFARYH----QHL---------HELLDLDISPLDY----MLQSFPEVKDR---E 498
R++ R Q L ++L ++Q EVKD E
Sbjct: 60 RQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQD--EVKDPARCE 117
Query: 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA 558
++ + G L R + LS G+ + + P LL+LDEP + LD+ +
Sbjct: 118 QLAQQFGITALLDR----RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQ 173
Query: 559 LADAINDFEGG---LVLVSHDF 577
LA+ + LVLV + F
Sbjct: 174 LAELLASLHQSGITLVLVLNRF 195
Score = 36.9 bits (86), Expect = 0.031
Identities = 49/180 (27%), Positives = 70/180 (38%), Gaps = 33/180 (18%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167
L LN G + +G NGSGKS L L + +
Sbjct: 24 LTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQS-QFSH--IT------------ 68
Query: 168 DEERVRLEKLAEQLVACEDDESQEQLMD-IYDRLDDISADTAE---------ARAANILH 217
R+ E+L ++LV DE Q D + DD TAE AR +
Sbjct: 69 ---RLSFEQL-QKLV---SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQ 121
Query: 218 GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT 277
G T + ++ K S G + L +AL +P LL+LDEP + LD+ + L E L +
Sbjct: 122 QFGITA-LLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLAS 180
Score = 34.2 bits (79), Expect = 0.22
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 216 LHGLGFTKEMQQKKTKDFSGGWRMRIAL-ARALYVKPHLLLLDEPTNHLD 264
L LG K S G + R+AL RAL P LL+LDEP LD
Sbjct: 385 LDILGIDKRTADAPFHSLSWG-QQRLALIVRALVKHPTLLILDEPLQGLD 433
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 50.7 bits (122), Expect = 3e-07
Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 47/150 (31%)
Query: 431 ALVGPNGAGKSTLLNL---------IYGDLTPSVGMVRKNSHLRFARY--HQHLHELLDL 479
AL+G +GAGK+TLL++ I G++ + G + R Y Q +H
Sbjct: 37 ALMGESGAGKTTLLDVLAGRKTAGVITGEILIN-GRPLDKNFQRSTGYVEQQDVHS---- 91
Query: 480 DISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAP 539
P + RE +R +R LS Q+ R+ P
Sbjct: 92 ------------PNLTVREALR------------FSALLRGLSVEQRKRLTIGVELAAKP 127
Query: 540 HLLLLDEPTNHLD-------METIDALADA 562
+L LDEPT+ LD + + LAD+
Sbjct: 128 SILFLDEPTSGLDSQAAYNIVRFLKKLADS 157
Score = 38.4 bits (90), Expect = 0.005
Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 52/168 (30%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
+LL + + G L+G +G+GK+TLL VL R+ +T E+ + +
Sbjct: 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRK-------TAGVITGEILINGR-- 71
Query: 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAA----NIL 216
+D+ R EQ D+ + R A +L
Sbjct: 72 -----PLDKNFQRSTGYVEQQ--------------------DVHSPNLTVREALRFSALL 106
Query: 217 HGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
GL ++Q+K R+ + L KP +L LDEPT+ LD
Sbjct: 107 RGLS----VEQRK----------RLTIGVELAAKPSILFLDEPTSGLD 140
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 53.4 bits (128), Expect = 3e-07
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 35/159 (22%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFA-------- 467
+ +N+ F ++ LA+ G G+GKS+LL +I G+L PS G ++ + + F+
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMP 500
Query: 468 -----------RYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVC 516
Y ++ + + + L+ + FPE KD + ++G G+T
Sbjct: 501 GTIKDNIIFGLSYDEYRYTSV-IKACQLEEDIALFPE-KD----KTVLGEGGIT------ 548
Query: 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
LS GQ+ R+ A ++ L LLD P HLD+ T
Sbjct: 549 ----LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583
Score = 50.7 bits (121), Expect = 2e-06
Identities = 54/185 (29%), Positives = 77/185 (41%), Gaps = 45/185 (24%)
Query: 91 ANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAV-LGNREVPVPDHIDIFHL 149
+NFS+ + +L++ +L G+ + G GSGKS+LL + +G E P I H
Sbjct: 432 SNFSL--YVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHS 486
Query: 150 TRE---------MPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRL 200
R MP + K + + DE R + AC+ +E
Sbjct: 487 GRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYT-----SVIKACQLEE------------ 529
Query: 201 DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260
DI+ E + G G T SGG R RI+LARA+Y L LLD P
Sbjct: 530 -DIAL-FPEKDKTVLGEG-GIT----------LSGGQRARISLARAVYKDADLYLLDSPF 576
Query: 261 NHLDL 265
HLD+
Sbjct: 577 THLDV 581
Score = 48.0 bits (114), Expect = 1e-05
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 372 NQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLA 431
Q T V + +PS G++ VQ ++ +Y++ G + ++L F ++ R+
Sbjct: 1195 YQLSTVLVIENPHAQKCWPSGGQM-----DVQGLTAKYTEAGRAVLQDLSFSVEGGQRVG 1249
Query: 432 LVGPNGAGKSTLLN 445
L+G G+GKSTLL+
Sbjct: 1250 LLGRTGSGKSTLLS 1263
Score = 40.3 bits (94), Expect = 0.003
Identities = 22/47 (46%), Positives = 27/47 (57%)
Query: 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
DV+ T G +LQD + G+R GLLG GSGKSTLL+ L
Sbjct: 1219 DVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265
Score = 37.2 bits (86), Expect = 0.032
Identities = 41/144 (28%), Positives = 60/144 (41%), Gaps = 29/144 (20%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFL 292
S G + + LAR++ K +LLLDEP+ HLD V L+ KT K Q F
Sbjct: 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLD---PVTLQIIRKTLK---------QSFS 1401
Query: 293 NGVCTNII--HLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFG 350
N CT I+ H + L+ C+ L + + +KQY+ Q + +
Sbjct: 1402 N--CTVILSEHRVEALLE---------CQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMS 1450
Query: 351 HGS-AKL---ARQAQSKEKTLAKM 370
KL R+ SK K K+
Sbjct: 1451 AADRLKLFPLHRRNSSKRKPQPKI 1474
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 51.6 bits (123), Expect = 3e-07
Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 34/213 (15%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR------EVPVP 141
+K+ + S ++ + ++ +++ + ++G +G GKST + L NR V V
Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTL-NRISELEGPVKVE 66
Query: 142 DHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD 201
+D F + + R+ + +L Q + M IY+ +
Sbjct: 67 GVVDFFG----------------QNIYDPRININRLRRQ-IGMVFQRPNPFPMSIYENVA 109
Query: 202 ---DISADTAEARAANI----LHGLGFTKEMQQKKTKD---FSGGWRMRIALARALYVKP 251
ISA +A I L G +E++ K K SGG + R+ +ARAL +KP
Sbjct: 110 YGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKP 169
Query: 252 HLLLLDEPTNHLDLDACVWLEEELKTYKRILVI 284
+LL+DEP + LD A + +EE + + + L I
Sbjct: 170 KVLLMDEPCSALDPIATMKVEELIHSLRSELTI 202
Score = 30.0 bits (67), Expect = 3.5
Identities = 51/234 (21%), Positives = 97/234 (41%), Gaps = 68/234 (29%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLI------ 447
P I V+++SF Y+ + +E GI +D A++GP+G GKST + +
Sbjct: 6 PAIKVKDLSFYYNTS-----KAIE-GISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL 59
Query: 448 ------------YG----DLTPSVGMVRKNSHLRFAR---YHQHLHELLDLDI------- 481
+G D ++ +R+ + F R + ++E + +
Sbjct: 60 EGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLP 119
Query: 482 -SPLDYMLQS-------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY 533
+ LD +++S + EVKD+ + GL+G GQ+ R+ A
Sbjct: 120 QADLDEIVESALKGAALWQEVKDKLNKSAL----GLSG------------GQQQRLCIAR 163
Query: 534 LAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLV--LVSHDFRLINQVAE 585
P +LL+DEP + LD + + I+ L +V+H+ + +V++
Sbjct: 164 ALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSD 217
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 51.4 bits (124), Expect = 3e-07
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260
KEM ++ D SGG + ++A+ARAL +P LLLLDEPT
Sbjct: 122 KEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
Score = 46.0 bits (110), Expect = 2e-05
Identities = 56/212 (26%), Positives = 84/212 (39%), Gaps = 56/212 (26%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMV--------RKNSHLRFAR-- 468
G+ L+ ++G NG GK+TLL + G L G + + H R
Sbjct: 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77
Query: 469 -Y---------HQHLHELLDLDISPL--------DYMLQSFPEVKDREEMRKIIGRYG-- 508
Y + E L ++ L D + + FP +K EM GR G
Sbjct: 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLK---EML---GRRGGD 131
Query: 509 LTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF-- 566
L+G QQ +QL+ R L + P LLLLDEPT + I + I
Sbjct: 132 LSGGQQ----QQLAIA---RA----LVTR-PKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179
Query: 567 EGGL--VLVSHDFRLINQVAEEIWICENGKVT 596
EGG+ +LV ++A+ ++ E G+V
Sbjct: 180 EGGMAILLVEQYLDFARELADRYYVMERGRVV 211
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 52.2 bits (125), Expect = 4e-07
Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 25/189 (13%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVGMV-------------------RKNSHLRFARYHQH 472
++G +G+GKST + ++ + P+ G + RK + F ++
Sbjct: 24 IMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83
Query: 473 LHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA 532
H + + S L L +PE + +E+ +++ GL + P +LS G + RV A
Sbjct: 84 PHMTILQNTS-LGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-DELSGGMQQRVGLA 141
Query: 533 YLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGL----VLVSHDFRLINQVAEEIW 588
P +LL+DE + LD D++ D + + L V ++HD ++ + I
Sbjct: 142 RALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIV 201
Query: 589 ICENGKVTK 597
I + G++ +
Sbjct: 202 IMKAGEIVQ 210
Score = 51.8 bits (124), Expect = 6e-07
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 17/194 (8%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
+ D L + G + ++GL+GSGKST + +L P I I D +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFI----------DGENIM 58
Query: 163 CVMEVDEERVRLEKLAE--QLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLG 220
V+ VR +K+ Q A + Q + L + +A +L +G
Sbjct: 59 KQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVG 118
Query: 221 FTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK---- 276
+E + + + SGG + R+ LARAL +P +LL+DE + LD +++ELK
Sbjct: 119 L-EEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA 177
Query: 277 TYKRILVIISHSQD 290
T ++ +V I+H D
Sbjct: 178 TLQKTIVFITHDLD 191
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 51.8 bits (124), Expect = 4e-07
Identities = 65/226 (28%), Positives = 90/226 (39%), Gaps = 54/226 (23%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV--------GMVRKNSH---- 463
I R+L I+ AL+G NGAGKSTLL + GDLT G V N
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 464 ---LRFARYH----QHLHELLDLDISPLDYMLQSFPEVK--------DREEMRKIIGRYG 508
R AR Q + +L +P + D E + + G
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAFSAREI-VLLGRYPHARRAGALTHRDGEIAWQALALAG 134
Query: 509 ---LTGRQQVCPIRQLSDGQKCRVVFAYL---------AWQAPHLLLLDEPTNHLD---- 552
L GR + LS G+ RV FA + A Q P LLLDEPT LD
Sbjct: 135 ATALVGRD----VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQ 190
Query: 553 ---METIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
++T+ LA D+ G++ + HD L + A+ I + +G +
Sbjct: 191 HRLLDTVRRLA---RDWNLGVLAIVHDPNLAARHADRIAMLADGAI 233
Score = 40.6 bits (95), Expect = 0.001
Identities = 53/186 (28%), Positives = 71/186 (38%), Gaps = 36/186 (19%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSAL 161
+L+D L + GR LLG NG+GKSTLL L ++ +T ++ + L
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG-DLTGGGAPRGARVTGDV-TLNGEPL 73
Query: 162 TCVMEVDEERVR--LEKLAEQLVACEDDE----------SQEQLMDIYDRLDDISADTAE 209
+ R+R L + A+ A E + + D +I A A
Sbjct: 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDG--EI-AWQAL 130
Query: 210 ARA-ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL---------YVKPHLLLLDEP 259
A A A L G T SGG R+ AR L P LLLDEP
Sbjct: 131 ALAGATALVGRDVTT---------LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEP 181
Query: 260 TNHLDL 265
T LDL
Sbjct: 182 TAALDL 187
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 49.7 bits (118), Expect = 4e-07
Identities = 29/151 (19%), Positives = 50/151 (33%), Gaps = 35/151 (23%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQ 489
+ +VGP G+GK+TL + +L P G V +D + + + Q
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGGGV----------------IYIDGEDILEEVLDQ 48
Query: 490 SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
+ ++ S + R+ A P +L+LDE T+
Sbjct: 49 LLLIIVGGKK-------------------ASGSGELRLRLALALARKLKPDVLILDEITS 89
Query: 550 HLDMETIDALADAINDFEGGLVLVSHDFRLI 580
LD E L L+ + +I
Sbjct: 90 LLDAEQEALLLLLEELRLLLLLKSEKNLTVI 120
Score = 40.8 bits (95), Expect = 4e-04
Identities = 35/189 (18%), Positives = 56/189 (29%), Gaps = 70/189 (37%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERV 172
G ++G GSGK+TL L RE+ + E E V
Sbjct: 2 GEVILIVGPPGSGKTTLARALA----------------RELGPPGGGVIYIDGEDILEEV 45
Query: 173 RLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD 232
+ L + + S E
Sbjct: 46 LDQLLLIIVGGKKASGSGEL---------------------------------------- 65
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLD---------LDACVWLEEELKTYKRILV 283
R+R+ALA A +KP +L+LDE T+ LD L+ L ++
Sbjct: 66 -----RLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVI 120
Query: 284 IISHSQDFL 292
+ ++ + L
Sbjct: 121 LTTNDEKDL 129
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 52.4 bits (126), Expect = 5e-07
Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 390 PSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG 449
+ PP++ +++S +YS G + + ++F + AL+G NGAGKSTL+ +I G
Sbjct: 2 QTSDTTAPPLLCARSISKQYS--GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG 59
Query: 450 DLTPSVGMVRKN----SHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG 505
+ P G + + L A+ HQ L + + P + +L FP + +E + +
Sbjct: 60 IVPPDSGTLEIGGNPCARLTPAKAHQ-----LGIYLVPQEPLL--FPNLSVKENILFGLP 112
Query: 506 RYGLTGRQQVCPIRQLSDGQKCRVVFAYL--AWQA-----------PHLLLLDEPTNHLD 552
+ + ++ + L L A + +L+LDEPT L
Sbjct: 113 KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLT 172
Query: 553 METIDALADAINDF--EG-GLVLVSHDFRLINQVAEEIWICENGKV 595
+ L I + +G G+V +SH I Q+A+ I + +G +
Sbjct: 173 PAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTI 218
Score = 38.1 bits (89), Expect = 0.012
Identities = 53/227 (23%), Positives = 93/227 (40%), Gaps = 39/227 (17%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
PV+ V++++ +G +RN+ + L L G GAG++ L +YG G
Sbjct: 267 PVLTVEDLT----GEG---FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGR 319
Query: 458 VRKNSHL--------RFARYHQHLHEL-----LDLD------ISPLDYMLQSFPEVKDRE 498
+ N R AR +L E L LD + L + + F RE
Sbjct: 320 IMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE 379
Query: 499 EMRKIIGRY------GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
++ RY +Q R LS G + +V+ A +P LL++DEPT +D
Sbjct: 380 --NAVLERYRRALNIKFNHAEQ--AARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435
Query: 553 METIDALADAINDFEG---GLVLVSHDFRLINQVAEEIWICENGKVT 596
+ + + I ++ +S D I Q+A+ + + G+++
Sbjct: 436 VSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEIS 482
Score = 36.2 bits (84), Expect = 0.051
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 218 GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
+ F Q +T SGG + ++ +A+ L P LL++DEPT +D+ A
Sbjct: 391 NIKFNHAEQAART--LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSA 438
Score = 32.3 bits (74), Expect = 0.72
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 92 NFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP 139
+ S + G E+L+ L+ G + LLG NG+GKSTL+ ++ P
Sbjct: 16 SISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP 63
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 51.0 bits (123), Expect = 5e-07
Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 53/228 (23%)
Query: 87 DVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI 146
+++ + ++ + L+D L++ + L+G +G GKSTLL L NR + D I
Sbjct: 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NR---MNDLIPG 62
Query: 147 FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQ---LMDIYD----- 198
+ E+ K+ ++V E R R+ +V Q+ M IYD
Sbjct: 63 ARVEGEVLLDGKNIYDPKVDVVELRRRV-----GMVF------QKPNPFPMSIYDNVAYG 111
Query: 199 ---------RLDDISADTAEARAA------NILHGLGFTKEMQQKKTKDFSGGWRMRIAL 243
LD+I +++ +AA + LH SGG + R+ +
Sbjct: 112 LRLHGIKDKELDEI-VESSLKKAALWDEVKDRLHKSAL----------GLSGGQQQRLCI 160
Query: 244 ARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHS 288
ARAL VKP +LL+DEPT+ LD + + +EE ELK K +VI++H+
Sbjct: 161 ARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHN 207
Score = 46.8 bits (112), Expect = 1e-05
Identities = 59/210 (28%), Positives = 82/210 (39%), Gaps = 89/210 (42%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLD----TRLALVGPNGAGKSTLL---NLIYGD 450
P I V++++ Y D L I+LD AL+GP+G GKSTLL N + D
Sbjct: 6 PAIEVRDLNLYYGD-----KHAL-KDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN-D 58
Query: 451 LTPS---------------------------VGMVRKNSHLRFAR-------------YH 470
L P VGMV F + Y
Sbjct: 59 LIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMV-------FQKPNPFPMSIYDNVAYG 111
Query: 471 QHLHELLDLDISPLDYMLQS-------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSD 523
LH + D + LD +++S + EVKDR + + L LS
Sbjct: 112 LRLHGIKDKE---LDEIVESSLKKAALWDEVKDR------LHKSALG----------LSG 152
Query: 524 GQKCRVVFAY-LAWQAPHLLLLDEPTNHLD 552
GQ+ R+ A LA + P +LL+DEPT+ LD
Sbjct: 153 GQQQRLCIARALAVK-PEVLLMDEPTSALD 181
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 51.2 bits (123), Expect = 6e-07
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN-SHLRFARYHQ--HLH 474
N+ F + L+GPNGAGK+T +I G L P+ G + N L ++ +L
Sbjct: 19 DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP 78
Query: 475 ELLDL--DISPLDYM-----LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKC 527
E L ++ D + L+ P+ + +++++ + R + G++ I++LS G +
Sbjct: 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTK-KIKELSKGNQQ 137
Query: 528 RVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVS 574
++ F P LL+LDEP + LD ++ L DAI + EG ++ S
Sbjct: 138 KIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFS 186
Score = 48.9 bits (117), Expect = 3e-06
Identities = 52/231 (22%), Positives = 92/231 (39%), Gaps = 28/231 (12%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++I + +F + + + E+ G +GLLG NG+GK+T ++ P I
Sbjct: 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWN 62
Query: 148 --HLTREMPASDKSALTCVMEVDEER--VRLEKLAEQLVACEDDESQEQLMDIYDRLDDI 203
L++E+ + + EER + +QL L +
Sbjct: 63 GGPLSQEIKN-------RIGYLPEERGLYPKMTVEDQLK-------------YLAELKGM 102
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
+ + L L + KK K+ S G + +I A+ +P LL+LDEP + L
Sbjct: 103 PKAEIQKKLQAWLERLEIV-GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161
Query: 264 DLDACVWLEEELKTYK-RILVII--SHSQDFLNGVCTNIIHLDKRKLKYYG 311
D L++ + K II SH + + +C ++ L K + YG
Sbjct: 162 DPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYG 212
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 51.1 bits (122), Expect = 6e-07
Identities = 69/258 (26%), Positives = 110/258 (42%), Gaps = 38/258 (14%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREV---PVP--- 141
++I + ++F E+L LE+ L+G +GSGKSTLL V NR + P
Sbjct: 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRLIELYPEARVS 62
Query: 142 -----DHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDI 196
D DIF M+V E R R++ + Q+ + S + + +
Sbjct: 63 GEVYLDGQDIFK----------------MDVIELRRRVQ-MVFQIPNPIPNLSIFENVAL 105
Query: 197 YDRLDDISADTAE--ARAANILHGLGFTKEMQQK---KTKDFSGGWRMRIALARALYVKP 251
+L+ + E R L E++ + SGG + R+ +ARAL +P
Sbjct: 106 GLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQP 165
Query: 252 HLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLK 308
+LL DEPT +LD + +E ELK I V+++H + + L K ++
Sbjct: 166 EVLLADEPTANLDPENTAKIESLFLELKKDMTI-VLVTHFPQQAARISDYVAFLYKGQIV 224
Query: 309 YYGGNYEAFCKTRLELLE 326
+G E F R EL E
Sbjct: 225 EWGPTREVFTNPRHELTE 242
Score = 34.1 bits (78), Expect = 0.17
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 517 PIRQLSDGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLV 573
P +LS GQ+ R+ A LA+Q P +LL DEPT +LD E + + + +VLV
Sbjct: 143 PAGKLSGGQQQRLCIARALAFQ-PEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLV 201
Query: 574 SHDFRLINQVAEEIWICENGKVTKW 598
+H + ++++ + G++ +W
Sbjct: 202 THFPQQAARISDYVAFLYKGQIVEW 226
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 50.2 bits (121), Expect = 6e-07
Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 59/229 (25%)
Query: 400 IMVQNVSFRYSDD---GPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
I V++ SF + + +++ + +A+VGP G+GKS+LL+ + G+L G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 457 MVRKNSHLRFA------------------------RYHQHLHE-LLDLDISPLDYMLQSF 491
V + + RY + + L+ D L+
Sbjct: 61 SVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPD-------LEIL 113
Query: 492 PEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551
P+ D E IG G+ LS GQK R+ A + + LLD+P + +
Sbjct: 114 PD-GDLTE----IGEKGIN----------LSGGQKQRISLARAVYSDADIYLLDDPLSAV 158
Query: 552 DMETIDALADAINDFEGGL------VLVSHDFRLINQVAEEIWICENGK 594
D + + N G L +LV+H +L+ A++I + +NG+
Sbjct: 159 DAHVGRHIFE--NCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204
Score = 42.8 bits (102), Expect = 1e-04
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL--------KTYKRILVII 285
SGG + RI+LARA+Y + LLD+P + +D + E KT RILV
Sbjct: 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT--RILV-- 184
Query: 286 SHSQDFL 292
+H L
Sbjct: 185 THQLQLL 191
Score = 29.4 bits (67), Expect = 4.2
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGN 135
L+D LE+ G ++G GSGKS+LL A+LG
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE 54
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 51.8 bits (124), Expect = 7e-07
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 17/223 (7%)
Query: 407 FRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-KNSH 463
F S DG + Y N+ F + + ++G NG+GKSTL NLI G P+ G V K S
Sbjct: 28 FFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA 87
Query: 464 LRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSD 523
A +L ++ L ++ + K +E + +II + G+ P++ S
Sbjct: 88 ALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEII-EFADIGKFIYQPVKTYSS 146
Query: 524 GQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF-EGG--LVLVSHDFRLI 580
G K R+ FA P +L++DE + D D +N+F E G + +SH +
Sbjct: 147 GMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHS---L 203
Query: 581 NQV----AEEIWICENGKVTKWEGNILDYKETLRAKVLKEKNK 619
+QV + +W+ G+V ++ G+I + + LK+ N+
Sbjct: 204 SQVKSFCTKALWL-HYGQVKEY-GDIKEVVDHYDE-FLKKYNQ 243
Score = 49.9 bits (119), Expect = 3e-06
Identities = 64/260 (24%), Positives = 111/260 (42%), Gaps = 46/260 (17%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L + E+ G G++GLNGSGKSTL ++ +P +DI +AL
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDI---------KGSAALI 90
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIY-DRLDDISADTAEARAANILHGLGF 221
+ L QL E+ E + +M + +++ +I + E A+I
Sbjct: 91 AISS---------GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEF--ADI------ 133
Query: 222 TKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD---LDACVWLEEELKTY 278
K + Q K +S G + R+ A ++++ P +L++DE + D C+ E K
Sbjct: 134 GKFIYQP-VKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ 192
Query: 279 KRILVIISHSQDFLNGVCTNIIHLDKRKLKYYG------GNYEAFCKTRLELLENQMKQY 332
+ + ISHS + CT + L ++K YG +Y+ F K ++ + K +
Sbjct: 193 GKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKYNQMSVEERKDF 252
Query: 333 NWEQDQIAHMKNYIARFGHG 352
EQ I++F HG
Sbjct: 253 REEQ---------ISQFQHG 263
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 50.9 bits (122), Expect = 7e-07
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 21/171 (12%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
+ + D E G+ Y ++G GSGKSTL+ + P + + +T DK
Sbjct: 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80
Query: 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQL-------MDIYDRLDDISADTAEARAA 213
+ + + QL ED +E + M++ D + A
Sbjct: 81 RPVRKRIG---MVFQFPESQLF--EDTVEREIIFGPKNFKMNL---------DEVKNYAH 126
Query: 214 NILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+L LGF++++ + SGG +IA+ L + P +++LDEPT LD
Sbjct: 127 RLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177
Score = 46.3 bits (110), Expect = 2e-05
Identities = 51/226 (22%), Positives = 98/226 (43%), Gaps = 34/226 (15%)
Query: 400 IMVQNVSFRYSDDGPWIY---RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
I NVS+ Y P+ + ++ + A+VG G+GKSTL+ I L P+ G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 457 MVR----------KNSHLRFARYH----------QHLHELLDLDI--SPLDYMLQSFPEV 494
V K+ ++R R Q + ++ +I P ++ + + EV
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKM-NLDEV 121
Query: 495 KDREEMRKIIGRYGLTGR-QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM 553
K+ +++ G + P Q+S GQ ++ + P +++LDEPT LD
Sbjct: 122 KNYA--HRLLMDLGFSRDVMSQSPF-QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178
Query: 554 ETIDALADAINDFE----GGLVLVSHDFRLINQVAEEIWICENGKV 595
++ + + + ++LVSHD + + A+E+ + + G +
Sbjct: 179 QSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSI 224
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 52.0 bits (125), Expect = 7e-07
Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 32/220 (14%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I + NVSF Y DD + +N+ + +ALVG G+GKSTL +L+ G + G +R
Sbjct: 341 IDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399
Query: 460 KNSHLRFARYHQHLHE--------------------LLDLDISPLDYMLQSFPEVKDREE 499
+ + H L + L DIS + + Q+ V+ E
Sbjct: 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISE-EQVWQALETVQLAEL 458
Query: 500 MRKII-GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA 558
R + G Y G Q LS GQK + A + Q P +L+LDE T ++D T A
Sbjct: 459 ARSLPDGLYTPLGEQG----NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQA 514
Query: 559 LADAINDF--EGGLVLVSHDFRLINQV-AEEIWICENGKV 595
+ A+ LV+++H RL V A+ I + G+
Sbjct: 515 IQQALAAVREHTTLVVIAH--RLSTIVEADTILVLHRGQA 552
Score = 31.2 bits (71), Expect = 2.0
Identities = 57/209 (27%), Positives = 90/209 (43%), Gaps = 19/209 (9%)
Query: 85 SRDVKIANFSITFHGCEL-LQDTMLELNCGRRYGLLGLNGSGKSTLLAVL-GNREVPVPD 142
S + I N S + L LQ+ L + L+G GSGKSTL ++L G
Sbjct: 338 SGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY---PLT 394
Query: 143 HIDIFHLTREMPASDKSAL-TCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD 201
+I R + + S L V V ++ V L V D S+EQ ++ L+
Sbjct: 395 EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQ---VWQALE 451
Query: 202 DIS-ADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT 260
+ A+ A + + LG +Q S G + +ALAR L P +L+LDE T
Sbjct: 452 TVQLAELARSLPDGLYTPLG-----EQGNN--LSVGQKQLLALARVLVQTPQILILDEAT 504
Query: 261 NHLDLDACVWLEEELKTYKR--ILVIISH 287
++D +++ L + LV+I+H
Sbjct: 505 ANIDSGTEQAIQQALAAVREHTTLVVIAH 533
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 51.8 bits (124), Expect = 8e-07
Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 21/184 (11%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHE 475
+ RNL I +A+VG +GAGK+TLL +I G + + +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 476 LLDLDISPLDYMLQSFPEVKDREEMRKIIG----------RYGLTGR-QQVCPIRQLSDG 524
L+ + P F EV E +R G R GL+ +LS G
Sbjct: 458 LIPGEYEP------EFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTG 511
Query: 525 QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIN----DFEGGLVLVSHDFRLI 580
QK R A L + P++LL+DE HLD T +A I+ + L++V+H +
Sbjct: 512 QKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVG 571
Query: 581 NQVA 584
N +
Sbjct: 572 NALR 575
Score = 39.8 bits (93), Expect = 0.005
Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 34/217 (15%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKSTLLA-VLGNREVPVPDHIDIFHLTREMPASDKSA 160
+L++ LE+ G ++G +G+GK+TLL +LG ++ + E+P + SA
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 161 LTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLG 220
L + E + E L + D++A A IL+ G
Sbjct: 458 L--IPGEYEPEFGEVTILEHL---------------RSKTGDLNA------AVEILNRAG 494
Query: 221 FTKE-MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK 279
+ + ++K + S G + R LA+ L +P++LL+DE HLD V + ++
Sbjct: 495 LSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554
Query: 280 R----ILVIISHSQDFLNGVCTNIIHLDKRKLKYYGG 312
R L++++H + N + D L YG
Sbjct: 555 REAGITLIVVTHRPEVGNALRP-----DTLILVGYGK 586
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 50.4 bits (121), Expect = 8e-07
Identities = 26/58 (44%), Positives = 42/58 (72%), Gaps = 4/58 (6%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHS 288
SGG + R+ +ARA+ ++P +LLLDEPT+ LD + + +EE ELK+ K +VI++H+
Sbjct: 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHN 226
Score = 33.5 bits (77), Expect = 0.28
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
LS GQ+ R+V A P +LLLDEPT+ LD
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALD 200
Score = 33.1 bits (76), Expect = 0.33
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLL 444
+ V+N++ Y D + L F I + A +GP+G GKSTLL
Sbjct: 23 QTALEVRNLNLFYGDK-----QAL-FDISMRIPKNRVTAFIGPSGCGKSTLL 68
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 50.2 bits (120), Expect = 9e-07
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYK 279
K+ + SGG R R+ +ARAL +KP +LL+DEPT ++D +EE ELK
Sbjct: 140 KDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEY 199
Query: 280 RILVIISHS 288
I V+++HS
Sbjct: 200 TI-VLVTHS 207
Score = 37.1 bits (86), Expect = 0.019
Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 46/192 (23%)
Query: 423 GIDL----DTRLALVGPNGAGKSTLL------------------------NLIYGDLTP- 453
G+DL + AL+GP+G GKSTLL N+ D+ P
Sbjct: 22 GVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81
Query: 454 ----SVGMVRKNSHLRFARYHQHLHELLDLDIS-PLDYMLQSFPEVKDREE--MRKIIGR 506
VGMV ++ HL ++ I L+ +++S E+ +R E ++K
Sbjct: 82 EVRREVGMV-----FQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALW 136
Query: 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD---METIDALADAI 563
+ R P LS GQ+ R+V A P +LL+DEPT ++D I+ L +
Sbjct: 137 DEVKDRLNDYP-SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL 195
Query: 564 NDFEGGLVLVSH 575
E +VLV+H
Sbjct: 196 KK-EYTIVLVTH 206
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 51.0 bits (122), Expect = 9e-07
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+ A+ A L+ +G ++ SGG + R+A+A L ++P +L+ DEPT
Sbjct: 147 VKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAG 206
Query: 263 LDLDA---CVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
LD + L + K + + +I+H+ + + V +I +DK K+ G YE F
Sbjct: 207 LDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIF 264
Score = 41.8 bits (98), Expect = 7e-04
Identities = 58/243 (23%), Positives = 98/243 (40%), Gaps = 51/243 (20%)
Query: 399 VIMVQNVSFRYSDDGP---WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
++ V+N+ + + N+ + + + ++G +G+GKSTL+ G +
Sbjct: 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY 80
Query: 456 GMVR--------KNSHLRFARYH-----QHLHELLDLDISPLDYMLQSFPEV-------- 494
G ++ K ++ ++ EL +S M+ FPE
Sbjct: 81 GTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRR-VS----MVFQFPEYQLFKDTIE 135
Query: 495 KD-----------REEMRKIIGRY----GL-TGRQQVCPIRQLSDGQKCRVVFA-YLAWQ 537
KD + E +K+ Y GL + P LS GQK RV A LA Q
Sbjct: 136 KDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF-GLSGGQKRRVAIAGILAIQ 194
Query: 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLV-SHDFRLINQVAEEIWICENGK 594
P +L+ DEPT LD + + I D V V +H + +VA+E+ + + GK
Sbjct: 195 -PEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253
Query: 595 VTK 597
+ K
Sbjct: 254 ILK 256
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 50.5 bits (121), Expect = 1e-06
Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 44/228 (19%)
Query: 399 VIMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS--- 454
+I V+N++F+Y D + ++ F + L+++G NG+GKST + LI G L
Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 455 -------------------VGMVRKNSHLRFARYHQHLHELLDLDIS-PLDYMLQSFPEV 494
+GMV +N +Q + ++ D++ L+ E+
Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPD------NQFVGATVEDDVAFGLENKGIPHEEM 117
Query: 495 KDR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD- 552
K+R E +++G R+ P R LS GQK RV A P +++LDE T+ LD
Sbjct: 118 KERVNEALELVGMQDFKERE---PAR-LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 553 ---METIDALADAINDFEGGLVLVSHDFRLINQVA--EEIWICENGKV 595
+E I + +D++ ++ ++HD +++VA + + + +NG+V
Sbjct: 174 EGRLELIKTIKGIRDDYQMTVISITHD---LDEVALSDRVLVMKNGQV 218
Score = 37.0 bits (86), Expect = 0.022
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 225 MQQKKTKD---FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRI 281
MQ K ++ SGG + R+A+A A+ ++P +++LDE T+ LD + + E +KT K I
Sbjct: 130 MQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRL---ELIKTIKGI 186
Query: 282 -----LVIISHSQD 290
+ +IS + D
Sbjct: 187 RDDYQMTVISITHD 200
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 50.8 bits (121), Expect = 1e-06
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 204 SADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
AD AE R A+ L +G + SGG + RIA+ARA+ ++P +LLLDEP + L
Sbjct: 111 KADIAE-RVADALKLVGLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 264 DLDACVWLEEELKTYKRIL-----VIISHSQD 290
D + + EE+ L + ++H QD
Sbjct: 169 DANIRANMREEIAALHEELPELTILCVTHDQD 200
Score = 44.2 bits (104), Expect = 1e-04
Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 28/218 (12%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS--VGM 457
I + ++ Y + +L I+ LAL+G +G GK+TLL I G + + G
Sbjct: 6 IRIDHLRVAYG--ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGR 63
Query: 458 V-------------RKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKII 504
+ ++ L F Y H L D Q P+ E + +
Sbjct: 64 IAIADRDLTHAPPHKRGLALLFQNYALFPH-LKVEDNVAFGLRAQKMPKADIAERVADAL 122
Query: 505 GRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD-------METID 557
GL P QLS G + R+ A P +LLLDEP + LD E I
Sbjct: 123 KLVGLGDAAAHLP-AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIA 181
Query: 558 ALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
AL + + + ++ V+HD +A++ I ++G++
Sbjct: 182 ALHEELPELT--ILCVTHDQDDALTLADKAGIMKDGRL 217
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 50.5 bits (121), Expect = 1e-06
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+S + A+ RAA + +G + Q+ + SGG + R+ALA L ++P L+ DEPT
Sbjct: 136 VSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAG 195
Query: 263 LD-------LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315
LD L+ L ++ KT +++++H D + I K+ G Y+
Sbjct: 196 LDPQGVKEILEIFDNLNKQGKT----IILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYD 251
Query: 316 AFCKTRLELLENQMK 330
+ L+EN M+
Sbjct: 252 ILSDNKF-LIENNME 265
Score = 40.5 bits (95), Expect = 0.002
Identities = 59/248 (23%), Positives = 96/248 (38%), Gaps = 55/248 (22%)
Query: 400 IMVQNVSFRYSDDGPWIYR---NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
I V+N+ ++ P + N+ I+ +A++G G+GK+T + + L P G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 457 MVR---KNSHLR--------------------------------------FARYHQHLHE 475
+ K+ + FA Y Q +
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEY-QLFEQ 121
Query: 476 LLDLDI--SPLDYMLQSFPEVKDREEMRKIIGRYGL-TGRQQVCPIRQLSDGQKCRVVFA 532
++ DI P+ + S E K R K I GL Q P +LS GQK RV A
Sbjct: 122 TIEKDIIFGPVSMGV-SKEEAKKRA--AKYIELVGLDESYLQRSPF-ELSGGQKRRVALA 177
Query: 533 YLAWQAPHLLLLDEPTNHLDME-TIDALA--DAINDFEGGLVLVSHDFRLINQVAEEIWI 589
+ P L+ DEPT LD + + L D +N ++LV+HD + + +
Sbjct: 178 GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIF 237
Query: 590 CENGKVTK 597
++GK+ K
Sbjct: 238 FKDGKIIK 245
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 50.5 bits (121), Expect = 1e-06
Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 14/66 (21%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACV------W---LEEELKTYKRILVI 284
SGG + R+ALARAL V+P +LLLDEP LDA V W L EELK V
Sbjct: 138 SGGQKQRVALARALAVEPQILLLDEPFGA--LDAQVRKELRRWLRQLHEELKFTS---VF 192
Query: 285 ISHSQD 290
++H Q+
Sbjct: 193 VTHDQE 198
Score = 43.9 bits (104), Expect = 1e-04
Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 27/189 (14%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-----------KNSHLRFARYHQHL--HEL 476
+AL+GP+G+GK+TLL +I G + G +R ++ + F H L H
Sbjct: 31 VALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMT 90
Query: 477 LDLDISPLDYMLQSFP--EVKDREEMRKIIGRY----GLTGRQQVCPIRQLSDGQKCRVV 530
+ +I+ + L P E + ++ + + L P QLS GQK RV
Sbjct: 91 VFDNIA---FGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-AQLSGGQKQRVA 146
Query: 531 FAYLAWQAPHLLLLDEPTNHLD----METIDALADAINDFEGGLVLVSHDFRLINQVAEE 586
A P +LLLDEP LD E L + + V V+HD +VA+
Sbjct: 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADR 206
Query: 587 IWICENGKV 595
+ + G +
Sbjct: 207 VVVMSQGNI 215
Score = 36.6 bits (85), Expect = 0.032
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137
++IAN +F ++L D L++ G+ LLG +GSGK+TLL ++ E
Sbjct: 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE 52
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 50.0 bits (119), Expect = 1e-06
Identities = 61/260 (23%), Positives = 109/260 (41%), Gaps = 26/260 (10%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG---NREVPVPDHI 144
+++ + TF+ + L L ++ G LLG +GSGKSTLL L + HI
Sbjct: 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI 64
Query: 145 DIF--------HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLV-ACEDDESQEQLMD 195
++ L R++ S ++ + + RL L L+ A
Sbjct: 65 ELLGRTVQREGRLARDIRKS-RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFS 123
Query: 196 IYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLL 255
+ R + RA L +G Q+ SGG + R+A+ARAL + ++L
Sbjct: 124 WFTREQ-------KQRALQALTRVGMVHFAHQR-VSTLSGGQQQRVAIARALMQQAKVIL 175
Query: 256 LDEPTNHLDLDACVWLEEELKTYKR---ILVIIS-HSQDFLNGVCTNIIHLDKRKLKYYG 311
DEP LD ++ + + L+ + I V+++ H D+ C I+ L + + +Y
Sbjct: 176 ADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV-FYD 234
Query: 312 GNYEAFCKTRLELLENQMKQ 331
G+ + F R + L + +
Sbjct: 235 GSSQQFDNERFDHLYRSINR 254
Score = 43.5 bits (102), Expect = 2e-04
Identities = 56/202 (27%), Positives = 79/202 (39%), Gaps = 53/202 (26%)
Query: 430 LALVGPNGAGKSTLL----NLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDI---- 481
+AL+GP+G+GKSTLL LI GD + SH+ L DI
Sbjct: 33 VALLGPSGSGKSTLLRHLSGLITGDKSAG-------SHIELLGRTVQREGRLARDIRKSR 85
Query: 482 SPLDYMLQSFPEVKDREEMRKI-IGRYGLTGRQQVC------------------------ 516
+ Y+ Q F V + + IG G T + C
Sbjct: 86 ANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF 145
Query: 517 ---PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET----IDALADAINDFEGG 569
+ LS GQ+ RV A Q ++L DEP LD E+ +D L D IN +G
Sbjct: 146 AHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD-INQNDGI 204
Query: 570 LVLVSHDFRLINQVAEEIWICE 591
V+V+ ++QV + CE
Sbjct: 205 TVVVT-----LHQVDYALRYCE 221
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 49.6 bits (119), Expect = 1e-06
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 61/221 (27%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPS---------------------VGM 457
++L+ R ++L+GPNGAGK+T+ N + G P+ +G+
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82
Query: 458 VRKNSHLRFAR-----------YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKI--- 503
VR H+R R HQ L + L L P + R E +
Sbjct: 83 VRTFQHVRLFREMTVIENLLVAQHQQLK-------TGLFSGLLKTPAFR-RAESEALDRA 134
Query: 504 ---IGRYGLTGRQQVCPIRQ---LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD-METI 556
+ R GL RQ L+ GQ+ R+ A P +L+LDEP L+ ET
Sbjct: 135 ATWLERVGLLE----HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETK 190
Query: 557 D--ALADAI-NDFEGGLVLVSHDFRLINQVAEEIWICENGK 594
+ L + N+ ++L+ HD +L+ +++ I++ G
Sbjct: 191 ELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231
Score = 31.1 bits (71), Expect = 1.7
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEP 259
A RAA L +G E ++ + + G + R+ +AR + +P +L+LDEP
Sbjct: 130 ALDRAATWLERVGLL-EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEP 180
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 49.7 bits (119), Expect = 2e-06
Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISH 287
SGG + R+ +ARA+ VKP +LL+DEP + LD + + LEE + K+ ++I++H
Sbjct: 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTH 220
Score = 35.5 bits (82), Expect = 0.063
Identities = 48/211 (22%), Positives = 79/211 (37%), Gaps = 82/211 (38%)
Query: 422 FGIDL----DTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFAR------YHQ 471
GID+ + AL+GP+G+GKST L + R N + AR Y
Sbjct: 37 KGIDMQFEKNKITALIGPSGSGKSTYLR----------SLNRMNDTIDIARVTGQILYR- 85
Query: 472 HLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG----------------------RYGL 509
+DI+ E+ + EMRK IG R G+
Sbjct: 86 ------GIDINR--------KEI-NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGV 130
Query: 510 TGRQQVCPI-----RQ-----------------LSDGQKCRVVFAYLAWQAPHLLLLDEP 547
++ + I +Q LS GQ+ R+ A P +LL+DEP
Sbjct: 131 KDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEP 190
Query: 548 TNHLDMETIDALADAINDFEGG--LVLVSHD 576
+ LD + L + + + + +++V+H+
Sbjct: 191 ASALDPISTMQLEETMFELKKNYTIIIVTHN 221
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 49.0 bits (118), Expect = 2e-06
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 32/188 (17%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +NVS RY + P + +N+ F I ++ +VG G+GKS+LL ++ + S G +
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62
Query: 460 KN----SHLRFARYHQHLHELLD-LDISPLD---------YMLQSFPEVKDREEMRKIIG 505
+ S + LH+L + I P D L F E D EE+ + +
Sbjct: 63 IDGVDISKI-------GLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSD-EELWQALE 114
Query: 506 RYGLTGRQQVCPIR----------QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
R GL + P LS GQ+ + A + +L+LDE T +D ET
Sbjct: 115 RVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174
Query: 556 IDALADAI 563
+ I
Sbjct: 175 DALIQKTI 182
Score = 39.0 bits (92), Expect = 0.003
Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 42/195 (21%)
Query: 87 DVKIANFSITF--HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD-- 142
D++ N S+ + + +L++ + G + G++G GSGKS+LL L R V +
Sbjct: 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLAL-FRLVELSSGS 60
Query: 143 -HIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQE-QLMD--IYD 198
ID VD ++ L L ++ Q+ L I
Sbjct: 61 ILID--------------------GVDISKIGLHDLRSRISII----PQDPVLFSGTIRS 96
Query: 199 RLD--DISADTAEARAANILHGLGFTKEMQQKKTKD-------FSGGWRMRIALARALYV 249
LD +D +A + F + + S G R + LARAL
Sbjct: 97 NLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR 156
Query: 250 KPHLLLLDEPTNHLD 264
K +L+LDE T +D
Sbjct: 157 KSKILVLDEATASVD 171
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 49.5 bits (118), Expect = 2e-06
Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 34/218 (15%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
++I NFS + + +++ +++ + ++G +G GK+TLL + NR + DHI F
Sbjct: 4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSI-NR---MNDHIPGF 59
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD--------- 198
+ ++ + ++V E R ++ + ++ M IYD
Sbjct: 60 RVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP--------MSIYDNVAFGPRIH 111
Query: 199 ------RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH 252
+LD I ++ + A K K SGG + R+ +ARAL V+P
Sbjct: 112 GVKSKHKLDRIVEESLKKAAL-----WDEVKSELNKPGTRLSGGQQQRLCIARALAVEPE 166
Query: 253 LLLLDEPTNHLDLDACVWLEEELK--TYKRILVIISHS 288
++LLDEPT+ LD A +E+ L+ + +VI++H+
Sbjct: 167 VILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHN 204
Score = 46.5 bits (110), Expect = 1e-05
Identities = 60/268 (22%), Positives = 110/268 (41%), Gaps = 59/268 (22%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
P+I ++N S Y + +N+ I + A++GP+G GK+TLL I
Sbjct: 2 PIIEIENFSAYYGEKK--AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSIN--------- 50
Query: 458 VRKNSHLRFARYHQHLH--------ELLDLDI----------SPLDYMLQSFPEV----- 494
R N H+ R ++ LD+ P + + + V
Sbjct: 51 -RMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPR 109
Query: 495 ----KDREEMRKIIGR-------YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543
K + ++ +I+ + + P +LS GQ+ R+ A P ++L
Sbjct: 110 IHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVIL 169
Query: 544 LDEPTNHLD---METIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTKWEG 600
LDEPT+ LD + I+ L + +++ +V+V+H+ ++A+ I + G
Sbjct: 170 LDEPTSALDPIATQRIEKLLEELSENY-TIVIVTHNIGQAIRIADYI-------AFMYRG 221
Query: 601 NILDYKETLRAKVLKEKNK-SAAVSNGK 627
+++Y T R V + KNK + GK
Sbjct: 222 ELIEYGPT-REIVERPKNKLTEEYLTGK 248
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 49.3 bits (118), Expect = 2e-06
Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 47/221 (21%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L+ L++ + L+G +G GKST L L NR + D I + E+ +
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTL-NR---MNDLIPSVKIEGEVLLDGQDIYK 74
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD---------------RLDDISADT 207
++V++ R R+ + +Q M IYD +LD+I +
Sbjct: 75 SDIDVNQLRKRVGMVFQQ--------PNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKS 126
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
+ A + + K+ +K SGG + R+ +ARAL V+P +LL+DEPT+ LD +
Sbjct: 127 L--KGAALWDEV---KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPIS 181
Query: 268 CVWLEE---ELKTYKRILVIISHSQD-----------FLNG 294
+ +EE ELK +VI++H+ FLNG
Sbjct: 182 TLKIEELIQELKK-DYTIVIVTHNMQQASRISDKTAFFLNG 221
Score = 32.7 bits (75), Expect = 0.47
Identities = 52/216 (24%), Positives = 90/216 (41%), Gaps = 68/216 (31%)
Query: 430 LALVGPNGAGKSTLLNLI--YGDLTPS---------------------------VGMVRK 460
AL+GP+G GKST L + DL PS VGMV +
Sbjct: 32 TALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQ 91
Query: 461 NSHLRFAR-------YHQHLHELLDLDISPLDYMLQS-------FPEVKDREEMRKIIGR 506
+ F Y H + D LD +++ + EVKDR + +
Sbjct: 92 QPNP-FPMSIYDNVAYGPRTHGIKDKKK--LDEIVEKSLKGAALWDEVKDRLKKSAL--- 145
Query: 507 YGLTGRQQ--VCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAIN 564
GL+G QQ +C R L+ P +LL+DEPT+ LD + + + I
Sbjct: 146 -GLSGGQQQRLCIARALA--------------VEPEVLLMDEPTSALDPISTLKIEELIQ 190
Query: 565 DFEGG--LVLVSHDFRLINQVAEEIWICENGKVTKW 598
+ + +V+V+H+ + ++++++ NG++ ++
Sbjct: 191 ELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEF 226
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 49.3 bits (118), Expect = 2e-06
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 23/168 (13%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR--------KNSHLRFARYHQHLHELLDLDI 481
+ ++GPNG GK+T + ++ G L P G + K +++ A Y + +LL I
Sbjct: 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIK-ADYEGTVRDLL-SSI 85
Query: 482 SPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHL 541
+ Y F + E+ K + + R+ + +LS G+ RV A + +
Sbjct: 86 TKDFYTHPYF-----KTEIAKPLQIEQILDRE----VPELSGGELQRVAIAACLSKDADI 136
Query: 542 LLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAE 585
LLDEP+ +LD+E + I F E +V HD +I+ +A+
Sbjct: 137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLAD 184
Score = 39.7 bits (93), Expect = 0.003
Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 35/159 (22%)
Query: 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVD 168
++ G+LG NG GK+T + +L P +
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKP--------------------------DEG 54
Query: 169 EERVRLEKLA---EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEM 225
+ + L+ ++ + + A + ++ L I E I L + +
Sbjct: 55 DIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE-----IAKPLQIEQIL 109
Query: 226 QQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
++ + SGG R+A+A L + LLDEP+ +LD
Sbjct: 110 DREVP-ELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 49.4 bits (118), Expect = 2e-06
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Query: 199 RLDDISADTAEARAANILHGLGFTKEMQ---QKKTKDFSGGWRMRIALARALYVKPHLLL 255
+LD+I + L +G +E+ + + SGG + R+ +ARA+ VKP +LL
Sbjct: 121 KLDEIVEKS--------LTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLL 172
Query: 256 LDEPTNHLDLDACVWLEEELKTYKR--ILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313
+DEP + LD A +E ++ K+ +++++HS V + ++ Y
Sbjct: 173 MDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTT 232
Query: 314 YEAF 317
E F
Sbjct: 233 QEIF 236
Score = 37.9 bits (88), Expect = 0.009
Identities = 19/78 (24%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDF 577
+LS GQ+ R+ A P +LL+DEP + LD + + + I + + +++V+H
Sbjct: 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSM 208
Query: 578 RLINQVAEEIWICENGKV 595
+ +V++ + ++G++
Sbjct: 209 KQAKKVSDRVAFFQSGRI 226
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 49.2 bits (117), Expect = 2e-06
Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRI--LVIISHS 288
SGG + R+ +ARAL V+P +LL+DEPT+ LD + +E+ + K++ ++I++H+
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHN 206
Score = 46.2 bits (109), Expect = 2e-05
Identities = 57/236 (24%), Positives = 90/236 (38%), Gaps = 69/236 (29%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI--YGDLTPS 454
++ Q+V+ Y D NL+ T AL+GP+G GK+T L I DLTP
Sbjct: 2 TLLLSAQDVNIYYGDKQAVKNVNLDVQ--RGTVNALIGPSGCGKTTFLRAINRMHDLTPG 59
Query: 455 ---------------------------VGMVRKN--------------SHLRFA--RYHQ 471
VGMV + + L+ A R
Sbjct: 60 ARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRD 119
Query: 472 HLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVF 531
HL E+ + + + EVKDR + P LS GQ+ R+
Sbjct: 120 HLMEVAERSLRGAAL----WDEVKDRLK----------------TPATGLSGGQQQRLCI 159
Query: 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEG--GLVLVSHDFRLINQVAE 585
A P +LL+DEPT+ LD + + D + D + +++V+H+ +V++
Sbjct: 160 ARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSD 215
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 50.3 bits (121), Expect = 2e-06
Identities = 53/180 (29%), Positives = 81/180 (45%), Gaps = 33/180 (18%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVR-KNSHLRFAR-----------YHQHLHELLD 478
AL+G NGAGKSTLL ++ G+ P G + +RFA +Q LH + +
Sbjct: 34 ALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93
Query: 479 LDISPLDYMLQSFPE---VKDREEMRKIIGRY----GLTGRQQVCPIRQLSDGQKCRVVF 531
+ ++ + L P + +R + G+ P++ LS GQ+ V
Sbjct: 94 MTVAE-NLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT-PLKYLSIGQRQMVEI 151
Query: 532 A-YLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVL-VSHDFRLINQVAEEI 587
A LA A ++ DEPT+ L I+ L I + EG ++L VSH R+ EEI
Sbjct: 152 AKALARNA-RVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSH--RM-----EEI 203
Score = 47.6 bits (114), Expect = 1e-05
Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 18/205 (8%)
Query: 92 NFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTR 151
TF G + L D + G+ + L+G NG+GKSTLL +L P I I
Sbjct: 9 GIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEM 68
Query: 152 EMPASDKSALTC-VMEVDEERVRLEKLAEQLVACEDDESQEQLM--DIYDRLDDISADTA 208
AS +AL V + +E L + E VA E L + + ++
Sbjct: 69 RF-ASTTAALAAGVAIIYQE---LHLVPEMTVA-------ENLYLGQLPHKGGIVNRRLL 117
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL---DL 265
A L LG + K S G R + +A+AL ++ DEPT+ L ++
Sbjct: 118 NYEAREQLEHLGVDIDPDT-PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREI 176
Query: 266 DACVWLEEELKTYKRILVIISHSQD 290
+ + EL+ R+++ +SH +
Sbjct: 177 EQLFRVIRELRAEGRVILYVSHRME 201
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 48.5 bits (116), Expect = 3e-06
Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 38/204 (18%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKS-TLLAVLGNREVPVPDHIDIFHLTREMPASDKSA 160
L+QD L L G L+G +GSGKS T LA+LG L + +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILG-------------LLPPGLTQTSGEI 47
Query: 161 LTCVMEVDEERVRLEKLAEQLVACEDDES--------QEQLMDIYDRLDDISADTAEARA 212
L + +R +A + ++ + ++ L +S A A
Sbjct: 48 LLDGRPLLPLSIRGRHIATIM---QNPRTAFNPLFTMGNHAIETLRSLGKLSKQ-ARALI 103
Query: 213 ANILH--GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVW 270
L GL +E+ +K SGG R+ +A AL ++P L+ DEPT LD+
Sbjct: 104 LEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQA- 162
Query: 271 LEEELKTYKRI-------LVIISH 287
LK + + +++I+H
Sbjct: 163 --RVLKLLRELRQLFGTGILLITH 184
Score = 47.7 bits (114), Expect = 6e-06
Identities = 47/212 (22%), Positives = 81/212 (38%), Gaps = 46/212 (21%)
Query: 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV----------GMVRKNSHLR--- 465
+L + LALVG +G+GKS I G L P + G +R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 466 --------------FARYHQHLHE----LLDLDISPLDYMLQSFPEVKDREEMRKIIGRY 507
H E L L +L++ V + +++ +Y
Sbjct: 64 IATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAV-GLPDPEEVLKKY 122
Query: 508 GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM----ETIDALADAI 563
QLS G RV+ A P L+ DEPT LD+ + L +
Sbjct: 123 PF----------QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR 172
Query: 564 NDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
F G++L++HD ++ ++A+E+ + ++G++
Sbjct: 173 QLFGTGILLITHDLGVVARIADEVAVMDDGRI 204
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 50.0 bits (120), Expect = 3e-06
Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 65/240 (27%)
Query: 76 TGSLAVHPKSRDVKIANFSITFHGCEL--LQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
G + D++ N + T+ G E+ L++ ++ G+ L+G +GSGKST+ A L
Sbjct: 330 EGKRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTI-ANL 388
Query: 134 GNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQ--LV--------- 182
LTR + L + D L L Q LV
Sbjct: 389 ---------------LTRFYDIDEGEIL--LDGHDLRDYTLASLRNQVALVSQNVHLFND 431
Query: 183 --------ACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ------- 227
A + S+EQ+ AA + + + F +M
Sbjct: 432 TIANNIAYARTEQYSREQI----------------EEAARMAYAMDFINKMDNGLDTVIG 475
Query: 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLE---EELKTYKRILVI 284
+ SGG R RIA+ARAL +L+LDE T+ LD ++ ++ +EL+ + LVI
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI 535
Score = 46.9 bits (112), Expect = 3e-05
Identities = 64/232 (27%), Positives = 103/232 (44%), Gaps = 53/232 (22%)
Query: 400 IMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI---Y------- 448
I +NV+F Y + P + RN+ F I +ALVG +G+GKST+ NL+ Y
Sbjct: 342 IEFRNVTFTYPGKEVPAL-RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400
Query: 449 ------------GDLTPSVGMVRKNSHL---------RFARYHQHLHELLDLDISPLDYM 487
L V +V +N HL +AR Q+ E I M
Sbjct: 401 LLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSRE----QIEEAARM 456
Query: 488 LQSFPEVKDREE-MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAY-LAWQAPHLLLLD 545
+ + + + +IG G+ LS GQ+ R+ A L +P +L+LD
Sbjct: 457 AYAMDFINKMDNGLDTVIGENGVL----------LSGGQRQRIAIARALLRDSP-ILILD 505
Query: 546 EPTNHLDMETIDALADAINDFEGG-LVLV-SHDFRLINQVAEEIWICENGKV 595
E T+ LD E+ A+ A+++ + LV +H I + A+EI + E+G++
Sbjct: 506 EATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK-ADEILVVEDGEI 556
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 49.4 bits (118), Expect = 4e-06
Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 45/195 (23%)
Query: 118 LLGLNGSGKSTL------LAVLGNREVPVPD---HIDIFHLTREMPASDKSALTCVMEVD 168
L+GL+GSGKSTL L + V V D +D+ + D + L
Sbjct: 55 LMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANC-------DAATL------- 100
Query: 169 EERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDIS-----ADTAEA----RAANILHGL 219
R+R +++ Q L+ ++++ +A R L +
Sbjct: 101 -RRLRTHRVSMVF-------QQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELV 152
Query: 220 GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL---- 275
G + +K + SGG + R+ LARA + +LL+DEP + LD L++EL
Sbjct: 153 GLA-QWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQ 211
Query: 276 KTYKRILVIISHSQD 290
K+ +V +SH D
Sbjct: 212 SKLKKTIVFVSHDLD 226
Score = 34.0 bits (78), Expect = 0.21
Identities = 53/202 (26%), Positives = 81/202 (40%), Gaps = 47/202 (23%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR---KNSHLRFARYHQHLHELLDLDISPLDY 486
L+G +G+GKSTLL + G S G V + + A L L +
Sbjct: 53 CVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAA--TLRRLRTHRVSM 110
Query: 487 MLQSF-----------------------PEVKDR-EEMRKIIGRYGLTGRQQVCPIRQLS 522
+ Q F E + R +E +++G L P +LS
Sbjct: 111 VFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVG---LAQWADRKP-GELS 166
Query: 523 DGQKCRVVFAY-LAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGL----VLVSHD- 576
G + RV A A +AP +LL+DEP + LD L D + + + L V VSHD
Sbjct: 167 GGMQQRVGLARAFATEAP-ILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDL 225
Query: 577 ---FRLINQVAEEIWICENGKV 595
++ N++A I E G++
Sbjct: 226 DEALKIGNRIA----IMEGGRI 243
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 48.2 bits (115), Expect = 5e-06
Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 22/225 (9%)
Query: 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR-EVPVPD------ 142
I + ++ +L+ LE+ G + ++G NGSGKSTL A L R + V
Sbjct: 4 IKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 63
Query: 143 HIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLV-ACEDDESQEQLMDIYDRLD 201
D+ L+ E A + + V+ V + + + A QE L DR D
Sbjct: 64 GKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPL----DRFD 119
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTK-DFSGGWRMRIALARALYVKPHLLLLDEPT 260
D E + + L +++ + FSGG + R + + ++P L +LDE
Sbjct: 120 --FQDLMEEK----IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD 173
Query: 261 NHLDLDACVWLEE---ELKTYKRILVIISHSQDFLNGVCTNIIHL 302
+ LD+DA + + L+ KR +I++H Q L+ + + +H+
Sbjct: 174 SGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV 218
Score = 30.1 bits (68), Expect = 2.7
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 522 SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG---LVLVSHDFR 578
S G+K R +A P L +LDE + LD++ + +AD +N G ++V+H R
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206
Query: 579 LINQV 583
+++ +
Sbjct: 207 ILDYI 211
Score = 30.1 bits (68), Expect = 3.3
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 4/25 (16%)
Query: 423 GIDLDTRL----ALVGPNGAGKSTL 443
G++L+ R A++GPNG+GKSTL
Sbjct: 19 GLNLEVRPGEVHAIMGPNGSGKSTL 43
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 48.1 bits (114), Expect = 5e-06
Identities = 49/212 (23%), Positives = 98/212 (46%), Gaps = 19/212 (8%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+KI + +H ++L++ ++ + ++G +G GKSTLL L NR + D +
Sbjct: 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRAL-NR---MNDIVSGA 60
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
L + +++ + ++V R R+ + +Q + + + D + T
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQ-----PNPFPKSIFDNVAFGPRMLGTT 115
Query: 208 AEARAANI----LHGLGFTKEMQQKKTKD---FSGGWRMRIALARALYVKPHLLLLDEPT 260
A++R + L E++ K SGG + R+ +AR L ++P ++L+DEP
Sbjct: 116 AQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 261 NHLDLDACVWLEE---ELKTYKRILVIISHSQ 289
+ LD + + +EE ELK I ++ + Q
Sbjct: 176 SALDPVSTMRIEELMQELKQNYTIAIVTHNMQ 207
Score = 29.6 bits (66), Expect = 3.9
Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 46/189 (24%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLL-------NLIYGD 450
P I ++ V+F Y + +N+ A++GP+G GKSTLL +++ G
Sbjct: 3 PKIKIRGVNFFYHKHQ--VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 451 -------------LTPSVGMV--RKNSHLRFARYHQHLHELLD--------LDI---SPL 484
+P++ +V RK + F + + + D L S L
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRL 120
Query: 485 DYMLQ-SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543
D +++ S + +E++ + + GL LS GQ+ R+ A + P ++L
Sbjct: 121 DEVVEKSLRQAALWDEVKDNLHKSGLA----------LSGGQQQRLCIARVLAIEPEVIL 170
Query: 544 LDEPTNHLD 552
+DEP + LD
Sbjct: 171 MDEPCSALD 179
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 49.0 bits (118), Expect = 5e-06
Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 47/181 (25%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQ 489
+ +VGPNG GK+T L+ G L P G V +L IS Y Q
Sbjct: 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEV-----------------DPELKIS---YKPQ 407
Query: 490 SFPEVKDREEM------RKIIGRYG-------LTGRQQV-----CPIRQLSDGQKCRV-V 530
+K + R I G + Q+ ++ LS G+ RV +
Sbjct: 408 ---YIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAI 464
Query: 531 FAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHDFRLINQVAEE 586
A L+ A L LLDEP+ HLD+E A+A AI E ++V HD +I+ +++
Sbjct: 465 AACLSRDA-DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDR 523
Query: 587 I 587
+
Sbjct: 524 L 524
Score = 47.1 bits (113), Expect = 2e-05
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 46/194 (23%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS-------HLRFARYHQHLHELLDLDIS 482
++GPNG GK+T + ++ G+L P++G + R + +L + +I
Sbjct: 102 TGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIK 161
Query: 483 P------LDYMLQSF-----------------PEVKDREEMRKIIGRYGLTGRQQVCPIR 519
+D + + F EV +R + I+ R I
Sbjct: 162 VVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDR----------DIS 211
Query: 520 QLSDGQKCRV-VFAYLAWQAPHLLLLDEPTNHLDM-ETIDALADAINDF-EGGLVL-VSH 575
+LS G+ RV + A L A DEPT++LD+ + ++ A I + EG VL V H
Sbjct: 212 ELSGGELQRVAIAAALLRDA-DFYFFDEPTSYLDIRQRLNV-ARLIRELAEGKYVLVVEH 269
Query: 576 DFRLINQVAEEIWI 589
D +++ +A+ + I
Sbjct: 270 DLAVLDYLADNVHI 283
Score = 42.9 bits (102), Expect = 4e-04
Identities = 42/160 (26%), Positives = 60/160 (37%), Gaps = 39/160 (24%)
Query: 109 ELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVD 168
E+ G G++G NG GK+T +L P D
Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP----------------------------D 392
Query: 169 EERVRLE-KLA---EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKE 224
E V E K++ + + D ++ L I D L + I+ L +
Sbjct: 393 EGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKS------EIIKPLQLERL 446
Query: 225 MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+ K KD SGG R+A+A L L LLDEP+ HLD
Sbjct: 447 LD-KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
Score = 32.5 bits (75), Expect = 0.76
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+ + SGG R+A+A AL DEPT++LD
Sbjct: 208 RDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 48.3 bits (116), Expect = 6e-06
Identities = 52/193 (26%), Positives = 79/193 (40%), Gaps = 39/193 (20%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLD----ISP--- 483
A+ G +GAGK++L+N I G P G + N + L D + + P
Sbjct: 28 AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRV-----------LFDAEKGICLPPEKR 76
Query: 484 -LDYMLQS---FPE--VK----------DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKC 527
+ Y+ Q FP V+ + KI+ G+ P LS G+K
Sbjct: 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGS-LSGGEKQ 135
Query: 528 RVVFAYLAWQAPHLLLLDEPTNHLDM----ETIDALADAINDFEGGLVLVSHDFRLINQV 583
RV AP LLL+DEP LD+ E + L + ++ VSH I ++
Sbjct: 136 RVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRL 195
Query: 584 AEEIWICENGKVT 596
A+ + + E GKV
Sbjct: 196 ADRVVVLEQGKVK 208
Score = 47.6 bits (114), Expect = 1e-05
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDL----DACVWLEEELKTYKRILVIISHSQ 289
SGG + R+A+ RAL P LLL+DEP LDL + +LE + ++ +SHS
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL 189
Query: 290 DFLNGVCTNIIHLDKRKLKYYG 311
D + + ++ L++ K+K +G
Sbjct: 190 DEILRLADRVVVLEQGKVKAFG 211
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 48.6 bits (116), Expect = 7e-06
Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 41/205 (20%)
Query: 76 TGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGN 135
+ + DV I F+ L++ L G+ G+ G GSGKSTLL+++
Sbjct: 304 SEPVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI-Q 362
Query: 136 REVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRL-----------EKLAEQLVAC 184
R V + FH ++P + +++D R RL + +A +
Sbjct: 363 RHFDVSEGDIRFH---DIPLTK-------LQLDSWRSRLAVVSQTPFLFSDTVANNIALG 412
Query: 185 EDDESQEQLMDIYDRLDDISADTAEARAANILHGL-----GFTKEMQQKKTKDFSGGWRM 239
D +Q+++ + AR A++ + G+ E+ ++ SGG +
Sbjct: 413 RPDATQQEIEHV-------------ARLASVHDDILRLPQGYDTEVGERGVM-LSGGQKQ 458
Query: 240 RIALARALYVKPHLLLLDEPTNHLD 264
RI++ARAL + +L+LD+ + +D
Sbjct: 459 RISIARALLLNAEILILDDALSAVD 483
Score = 36.6 bits (85), Expect = 0.038
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 406 SFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI 447
F Y N+ F + L + GP G+GKSTLL+LI
Sbjct: 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI 361
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 47.3 bits (112), Expect = 1e-05
Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 41/230 (17%)
Query: 400 IMVQNVSFRYSDDGPWIYR---NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG 456
I++ NVS+ Y+ P+ ++ N + ++G G+GKST++ L G + G
Sbjct: 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG 66
Query: 457 M--------------VRKNSHLR--------FARYHQHLHELLDLDIS--PLDYMLQSFP 492
+++ LR F Y Q E ++ DI+ P++
Sbjct: 67 QTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY-QLFQETIEKDIAFGPVNLGENKQE 125
Query: 493 EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
K E+ K++ ++ P +LS GQK RV A + + L+LDEPT LD
Sbjct: 126 AYKKVPELLKLVQLPEDYVKRS--PF-ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182
Query: 553 METIDALADAINDFE-------GGLVLVSHDFRLINQVAEEIWICENGKV 595
+ + D IN FE +++V+H+ + ++A+E+ + GKV
Sbjct: 183 PKGEE---DFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKV 229
Score = 40.8 bits (95), Expect = 0.001
Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 202 DISADTAEA--RAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEP 259
++ + EA + +L + ++ ++ + SGG + R+ALA + + + L+LDEP
Sbjct: 118 NLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
Query: 260 TNHLD----LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315
T LD D E K YK+ +++++H+ D + + +I + + K+ G +E
Sbjct: 178 TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237
Query: 316 AFCKTRLELL 325
F + ELL
Sbjct: 238 IF--SNQELL 245
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 46.6 bits (111), Expect = 1e-05
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 220 GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY- 278
+ K + SGG + RI+L R L P +LLLDE T+ LD + E + Y
Sbjct: 125 ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYV 184
Query: 279 --KRILVI-ISHSQDFLNGVCTNIIHLDKRKLKYYGGNYE 315
+ I V+ ++H +D +N +I L + YE
Sbjct: 185 REQNIAVLWVTHDKDEINH-ADKVITLQPHAGEMQEARYE 223
Score = 44.7 bits (106), Expect = 6e-05
Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 35/177 (19%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
P++ +QNV + I N+ F + + GP+G GKSTLL ++ ++P+ G
Sbjct: 6 PLLQLQNVGYLA--GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGT 63
Query: 458 V----RKNSHLRFARYHQHLHELLDLDISPLDYMLQS-------------FP-----EVK 495
+ S L+ Y Q + Y Q+ FP +
Sbjct: 64 LLFEGEDISTLKPEIYRQQ-----------VSYCAQTPTLFGDTVYDNLIFPWQIRNQQP 112
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
D + R+ L I +LS G+K R+ P +LLLDE T+ LD
Sbjct: 113 DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 48.3 bits (116), Expect = 1e-05
Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
S G R+ALARAL LLLLDEPT LD
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLD 517
Score = 45.2 bits (108), Expect = 1e-04
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 409 YSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN----SHL 464
S DG + L F + R+ALVGP+GAGK++LLN + G L P G ++ N L
Sbjct: 358 LSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELREL 416
Query: 465 RFARYHQHL 473
+ +HL
Sbjct: 417 DPESWRKHL 425
Score = 40.6 bits (96), Expect = 0.002
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFR 578
LS GQ R+ A Q LLLLDEPT LD + + A+N ++V+H
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE 545
Query: 579 LINQVAEEIWICENGKV 595
+ Q ++IW+ ++G++
Sbjct: 546 DLAQW-DQIWVMQDGQI 561
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 47.1 bits (112), Expect = 1e-05
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 4/58 (6%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHS 288
SGG + R+ +ARAL V+P +LL+DEP + LD A +EE ELK I +I++H+
Sbjct: 151 SGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTI-IIVTHN 207
Score = 32.8 bits (75), Expect = 0.42
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 395 IPPPVIM-VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI--YGDL 451
+ P M + +SF Y D +LEF + T AL+GP+G GKST L + DL
Sbjct: 1 MASPPKMEARGLSFFYGDFQALHDISLEFEQNQVT--ALIGPSGCGKSTFLRCLNRMNDL 58
Query: 452 TP 453
P
Sbjct: 59 IP 60
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 47.9 bits (114), Expect = 1e-05
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 96 TFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPA 155
TF G + L LE+ G GL G NG+GKSTL+ +L +I+ + A
Sbjct: 10 TFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKA 69
Query: 156 SDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLM---DIYDRLDDISADTAEARA 212
S+ D ER + + ++L + E + +I ++ + RA
Sbjct: 70 SNIR--------DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRA 121
Query: 213 ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL---DLDACV 269
N+L L + + D+ GG + + +A+AL + LL+LDEP++ L + + +
Sbjct: 122 KNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILL 181
Query: 270 WLEEELKTYKRILVIISHSQDFLNGVCTNI 299
+ +LK + V ISH + + VC I
Sbjct: 182 DIIRDLKAHGVACVYISHKLNEVKAVCDTI 211
Score = 41.0 bits (96), Expect = 0.002
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 32/202 (15%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLI-----YGDLTPSV---GMVRKNSHLR----- 465
GIDL+ R + L G NGAGKSTL+ ++ +G + G K S++R
Sbjct: 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78
Query: 466 -FARYHQHLHELLDLDISPLDYM---------LQSFPEVKDREEMRKIIGRYGLTGRQQV 515
HQ L + +L ++ ++ ++ + R + ++ L
Sbjct: 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAK--NLLRELQLDADNVT 136
Query: 516 CPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEG---GLVL 572
P+ GQ+ V A + LL+LDEP++ L + + L D I D + V
Sbjct: 137 RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVY 196
Query: 573 VSHDFRLINQVAEEIWICENGK 594
+SH + V + I + +G+
Sbjct: 197 ISHKLNEVKAVCDTICVIRDGQ 218
Score = 35.6 bits (82), Expect = 0.071
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 223 KEMQQKKTKDF---------SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
+Q+ K K SGG + + LA+ L P +L+LDEPT +D+ A
Sbjct: 385 SAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGA 438
Score = 31.3 bits (71), Expect = 1.8
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 17/70 (24%)
Query: 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHD 576
PI +LS G + + V A + P +L+LDEPT +D + A +
Sbjct: 400 PIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD---VGAKYEI-------------- 442
Query: 577 FRLINQVAEE 586
++LINQ+A+E
Sbjct: 443 YKLINQLAQE 452
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 46.9 bits (111), Expect = 1e-05
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 209 EARAANILHGLGFTKEMQQKKTK---DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
E R N L E++ + + SGG + R+ +ARAL P +LL DEPT+ LD
Sbjct: 135 EERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDP 194
Query: 266 DACVWLEE---ELKTYKRILVIISHSQ 289
A +EE +LK IL++ + Q
Sbjct: 195 IATASIEELISDLKNKVTILIVTHNMQ 221
Score = 34.6 bits (79), Expect = 0.11
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFR 578
LS GQ+ R+ A P +LL DEPT+ LD ++ + I+D + +++V+H+ +
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQ 221
Query: 579 LINQVAE 585
+V++
Sbjct: 222 QAARVSD 228
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 46.8 bits (111), Expect = 1e-05
Identities = 61/209 (29%), Positives = 92/209 (44%), Gaps = 47/209 (22%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
I+V +V+ + + G R+ F + + ALVG NG+GKSTL + +G
Sbjct: 5 AGIVVNDVTVTWRN-GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKAL-------MGF 56
Query: 458 VRKNSHLRFARYHQHLHELLDLDISPLDYMLQS------FPEVKDREEMRKIIGRYGLTG 511
VR + + + Q + L ++ + Y+ QS FP + + M +GRYG G
Sbjct: 57 VRL-ASGKISILGQPTRQALQKNL--VAYVPQSEEVDWSFPVLVEDVVM---MGRYGHMG 110
Query: 512 ---------RQQVCP--------------IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPT 548
RQ V I +LS GQK RV A Q ++LLDEP
Sbjct: 111 WLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPF 170
Query: 549 NHLDMET---IDALADAINDFEGGLVLVS 574
+D++T I +L + D EG +LVS
Sbjct: 171 TGVDVKTEARIISLLRELRD-EGKTMLVS 198
Score = 40.6 bits (95), Expect = 0.001
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 39/202 (19%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDHIDIFHLTREMP---ASDK 158
L+D + G L+G+NGSGKSTL A++G + I I P A K
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGK-ISIL----GQPTRQALQK 77
Query: 159 SALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRL---------DDISADTAE 209
+ + V + +E L E +V +M Y + D A
Sbjct: 78 NLVAYVPQSEEVDWSFPVLVEDVV----------MMGRYGHMGWLRRAKKRDRQIVTAAL 127
Query: 210 ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA-- 267
AR + E + ++ + SGG + R+ LARA+ + ++LLDEP +D+
Sbjct: 128 ARVDMV--------EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA 179
Query: 268 -CVWLEEELKTYKRILVIISHS 288
+ L EL+ + +++ +H+
Sbjct: 180 RIISLLRELRDEGKTMLVSTHN 201
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 48.0 bits (114), Expect = 1e-05
Identities = 60/230 (26%), Positives = 90/230 (39%), Gaps = 57/230 (24%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I V N +F ++ D P + F I +A+VG G GKS+LL+ + ++ G V
Sbjct: 637 ITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH 696
Query: 460 --------------KNSHLR----FA------RYHQHLHE---LLDLDISPLDYMLQSFP 492
+N LR F Y Q L L DL+I P
Sbjct: 697 MKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILP--------- 747
Query: 493 EVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
DR E IG G+ LS GQK RV A + + L D+P + +D
Sbjct: 748 -SGDRTE----IGEKGV----------NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792
Query: 553 METIDALADAINDFEGGL-----VLVSHDFRLINQVAEEIWICENGKVTK 597
+ + + EG L +LV+H + QV + I + GK+++
Sbjct: 793 AHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV-DVIIVMSGGKISE 841
Score = 40.7 bits (95), Expect = 0.003
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKR 280
+K + SGG + R++LARA+Y + L D+P + +D + + E LK R
Sbjct: 756 EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTR 815
Query: 281 ILVIISHSQDFL 292
ILV +H +L
Sbjct: 816 ILV--THGISYL 825
Score = 37.6 bits (87), Expect = 0.025
Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 28/208 (13%)
Query: 397 PPVIMVQ--NVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS 454
PP V+ N RY +D + R++ I ++ +VG GAGKS+L ++ +
Sbjct: 1280 PPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339
Query: 455 VGMVRKNSHLRFARYHQHLHEL-LDLDISPLDYMLQS---------FPEVKDREEMRKII 504
G + + L A+ LH+L + I P D +L S F + D EE+ +
Sbjct: 1340 EGEIIIDG-LNIAKI--GLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSD-EEVWWAL 1395
Query: 505 GRYGLTGRQQVCPIR----------QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
L P + LS GQ+ V A + +L+LDE T +D+E
Sbjct: 1396 ELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLE 1455
Query: 555 TIDALADAI-NDFEGGLVL-VSHDFRLI 580
T + + I FE VL ++H I
Sbjct: 1456 TDNLIQSTIRTQFEDCTVLTIAHRLNTI 1483
Score = 36.1 bits (83), Expect = 0.074
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT-YKRILVI-ISHS 288
++ S G R + LARAL K +L+LDE T +DL+ ++ ++T ++ V+ I+H
Sbjct: 1420 ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHR 1479
Query: 289 QDFLNGVC--TNIIHLDKRKLKYYG 311
LN + T +I LDK ++ +G
Sbjct: 1480 ---LNTIMDYTRVIVLDKGEVAEFG 1501
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 46.8 bits (111), Expect = 1e-05
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLE---EELKTYKRILVIISHSQ 289
SGG + R+ +AR L V+P +LLLDEPT+ LD A +E +EL+ I+++ + Q
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQ 242
Score = 41.8 bits (98), Expect = 6e-04
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 36/186 (19%)
Query: 431 ALVGPNGAGKSTLLNLI--YGDLTPS---VGMVRKNSHLRFARYHQHLHELLDLDISPLD 485
A++GP+G GKST L I DL PS G + + + ++ + LL I +
Sbjct: 69 AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV--LLRKKIGMVF 126
Query: 486 YMLQSFPE--------------VKDREEMRKIIGRYGLTGRQ-----QVCPIRQ-----L 521
FP+ + D++++ +I+ + + R+ +V L
Sbjct: 127 QKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEK---SLRKAALWDEVSDRLDKNALGL 183
Query: 522 SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRL 579
S GQ+ R+ A P +LLLDEPT+ LD + + D I + G +++V+H+ +
Sbjct: 184 SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQ 243
Query: 580 INQVAE 585
++V++
Sbjct: 244 ASRVSD 249
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 47.4 bits (113), Expect = 1e-05
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG + R+ALARAL +KP +LL DEP ++LD
Sbjct: 138 SGGQQQRVALARALILKPKVLLFDEPLSNLD 168
Score = 42.8 bits (101), Expect = 3e-04
Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 23/196 (11%)
Query: 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM-------VRKNS------HLR 465
NL I T + L+GP+G GK+T+L L+ G P+ G V S +
Sbjct: 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83
Query: 466 FARYHQHLHELLDLDISPLDYML-QSFPEVKDR-EEMRKIIGRYGLTGRQQVCPIRQLSD 523
F Y H L ++ ML E K R +E +++ G R + Q+S
Sbjct: 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY----VDQISG 139
Query: 524 GQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGL----VLVSHDFRL 579
GQ+ RV A P +LL DEP ++LD ++ + I + + + V+HD
Sbjct: 140 GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSE 199
Query: 580 INQVAEEIWICENGKV 595
V++ + + GK+
Sbjct: 200 AFAVSDTVIVMNKGKI 215
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 46.3 bits (110), Expect = 2e-05
Identities = 55/195 (28%), Positives = 81/195 (41%), Gaps = 58/195 (29%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI--YGDLTPSV 455
P++ V ++S Y+ +L+F + T AL+GP+G+GKSTLL I DL P V
Sbjct: 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEIT--ALIGPSGSGKSTLLRSINRMNDLNPEV 61
Query: 456 ---GMVRKNSH-----------LR--------------FARYHQHLHELL---DLDISPL 484
G + N H LR + Y ++ L D L
Sbjct: 62 TITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVL 121
Query: 485 DYMLQS-------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
D ++ + EVKDR + GL+G GQ+ RV A +
Sbjct: 122 DEAVEKSLKGASIWDEVKDRLHDSAL----GLSG------------GQQQRVCIARVLAT 165
Query: 538 APHLLLLDEPTNHLD 552
+P ++LLDEPT+ LD
Sbjct: 166 SPKIILLDEPTSALD 180
Score = 45.5 bits (108), Expect = 3e-05
Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 44/223 (19%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG-----NREVPVPD 142
+++++ S+ ++ + L L+ L+G +GSGKSTLL + N EV +
Sbjct: 6 LQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITG 65
Query: 143 HI------------DIFHLTREMPASDKSALTCVMEVDEERV---RLEKLAEQLVACEDD 187
I D L +E+ + M + E V RL+ + ++ V E
Sbjct: 66 SIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAV 125
Query: 188 ESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL 247
E + I+D + D D+A LG SGG + R+ +AR L
Sbjct: 126 EKSLKGASIWDEVKDRLHDSA----------LGL------------SGGQQQRVCIARVL 163
Query: 248 YVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISHS 288
P ++LLDEPT+ LD + +EE L K +++++ S
Sbjct: 164 ATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRS 206
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 46.4 bits (110), Expect = 2e-05
Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISHS 288
SGG + R+ +AR + ++P ++L+DEPT+ LD A +EE ++ K+ +VI++HS
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHS 203
Score = 37.5 bits (87), Expect = 0.014
Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 63/189 (33%)
Query: 431 ALVGPNGAGKSTLL-----------------------NLIYG-----DLTPSVGMVRKN- 461
AL+GP+G GKSTLL IYG DL VGMV +
Sbjct: 33 ALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKP 92
Query: 462 --------SHLRFARYHQHLHELLDLDISPLDYMLQS---FPEVKDREEMRKIIGRYGLT 510
++ + Q + + LD ++ L+ + EVKDR +
Sbjct: 93 NPFPMSIYENVAYGLRAQGIKDKKVLD-EVVERSLRGAALWDEVKDRLKS---------- 141
Query: 511 GRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD---METIDALADAI-NDF 566
LS GQ+ R+ A P ++L+DEPT+ LD I+ L + + ++
Sbjct: 142 ------HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNY 195
Query: 567 EGGLVLVSH 575
+V+V+H
Sbjct: 196 T--IVIVTH 202
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 46.5 bits (110), Expect = 2e-05
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 46/194 (23%)
Query: 118 LLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKL 177
L+G +G GKST L L NR + D I + E+ K+ ++V E R R+ +
Sbjct: 35 LIGPSGCGKSTFLRCL-NR---MNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMV 90
Query: 178 AEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ------KKT- 230
++ M IYD + A I HG+ KE+ + KK
Sbjct: 91 FQK--------PNPFPMSIYDNV---------AYGPRI-HGIKDKKELDKIVEWALKKAA 132
Query: 231 -----KD--------FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---E 274
KD SGG + R+ +AR + VKP ++L+DEPT+ LD + + +E+ E
Sbjct: 133 LWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVE 192
Query: 275 LKTYKRILVIISHS 288
LK I VI++H+
Sbjct: 193 LKKEYTI-VIVTHN 205
Score = 36.1 bits (83), Expect = 0.036
Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 50/193 (25%)
Query: 431 ALVGPNGAGKSTLLNLI--YGDLTPSV---GMVRKNSHLRFARYHQHLHELLDLDISPLD 485
AL+GP+G GKST L + DL +V G V + + + D+D+ L
Sbjct: 34 ALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK---------DVDVVELR 84
Query: 486 YML-------QSFPE--------------VKDREEMRKIIGRYGLTGRQQVCPIR----- 519
+ FP +KD++E+ KI+ + L ++
Sbjct: 85 KRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIV-EWALKKAALWDEVKDDLKK 143
Query: 520 ---QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD----METIDALADAINDFEGGLVL 572
+LS GQ+ R+ A P ++L+DEPT+ LD ++ D + + ++ +V+
Sbjct: 144 SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYT--IVI 201
Query: 573 VSHDFRLINQVAE 585
V+H+ + ++V++
Sbjct: 202 VTHNMQQASRVSD 214
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 47.6 bits (113), Expect = 2e-05
Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 27/175 (15%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVME----VD 168
G +LG +GSGKSTLL L R I + T + A+++ +++ V
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGR-------IQGNNFTGTILANNRKPTKQILKRTGFVT 146
Query: 169 EERVRLEKLA--EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQ 226
++ + L E LV C S +L + + I A +++ LG TK
Sbjct: 147 QDDILYPHLTVRETLVFC----SLLRLPKSLTKQEKILV------AESVISELGLTKCEN 196
Query: 227 QKKTKDF----SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKT 277
F SGG R R+++A + + P LL+LDEPT+ LD A L L +
Sbjct: 197 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGS 251
Score = 46.4 bits (110), Expect = 4e-05
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 19/142 (13%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPS--VGMVRKNSH------LR---FARYHQHLHELLD 478
LA++GP+G+GKSTLLN + G + + G + N+ L+ F L+ L
Sbjct: 97 LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLT 156
Query: 479 LDISPLDYMLQSFPEVKDREE----MRKIIGRYGLTGRQQVCP----IRQLSDGQKCRVV 530
+ + + L P+ ++E +I GLT + IR +S G++ RV
Sbjct: 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVS 216
Query: 531 FAYLAWQAPHLLLLDEPTNHLD 552
A+ P LL+LDEPT+ LD
Sbjct: 217 IAHEMLINPSLLILDEPTSGLD 238
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 47.2 bits (113), Expect = 2e-05
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+ ++N++F YS P + N + R+ALVG +G+GKST+ L+ G P G +
Sbjct: 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537
Score = 46.1 bits (110), Expect = 4e-05
Identities = 57/186 (30%), Positives = 80/186 (43%), Gaps = 55/186 (29%)
Query: 102 LLQDTMLELNCGRRYGLLGLNGSGKST---LLAVL-----GNREVPVPDHIDIFHLTREM 153
L+++ L L G+R L+G +GSGKST L+A L G E+ D I + RE+
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG--EILF-DGIPREEIPREV 550
Query: 154 PASDKSALTCVMEVDEE------RVRLEKLA--------EQLV-ACEDDESQEQLMDIYD 198
A+ V VD++ VR + L LV AC+D + +
Sbjct: 551 LAN------SVAMVDQDIFLFEGTVR-DNLTLWDPTIPDADLVRACKDAAIHDVITSRPG 603
Query: 199 RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDE 258
D A+ AE AN SGG R R+ +ARAL P +L+LDE
Sbjct: 604 GYD---AELAEG-GAN------------------LSGGQRQRLEIARALVRNPSILILDE 641
Query: 259 PTNHLD 264
T+ LD
Sbjct: 642 ATSALD 647
Score = 33.4 bits (77), Expect = 0.39
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 519 RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFR 578
LS GQ+ R+ A + P +L+LDE T+ LD ET + D + ++V+H
Sbjct: 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLS 673
Query: 579 LINQVAEEIWICENGKV 595
I +EI + E GKV
Sbjct: 674 TIRD-CDEIIVLERGKV 689
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 45.8 bits (108), Expect = 2e-05
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEE-----LKTYKRILVIIS 286
+ SGG R RI +ARALY +++ LD+P + LD+ L +E L+ KR LV+++
Sbjct: 140 NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVT 199
Query: 287 HSQDFL 292
H +L
Sbjct: 200 HKLQYL 205
Score = 33.1 bits (75), Expect = 0.32
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADA-----INDFEGGLVLVSH 575
LS GQ+ R+ A +Q +++ LD+P + LD+ D L + D + LVLV+H
Sbjct: 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTH 200
Query: 576 DFRLI 580
+ +
Sbjct: 201 KLQYL 205
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 46.9 bits (112), Expect = 2e-05
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 403 QNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+VSF Y + + ++ F +A+VGP GAGKSTL+NL+ P G +
Sbjct: 338 DDVSFSYDNSRQGVE-DVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393
Score = 42.3 bits (100), Expect = 8e-04
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 23/154 (14%)
Query: 118 LLGLNGSGKSTLLAVLGNREVPVPDHI-----DIFHLTREMPASDKSALTCVMEVDEERV 172
++G G+GKSTL+ +L P I DI +TR AS + + V + + +
Sbjct: 366 IVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTR---ASLRRNIAVVFQ--DAGL 420
Query: 173 RLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAAN--ILHGLGFTKEMQQKKT 230
+ + + D + E++ AE A+ I + ++
Sbjct: 421 FNRSIEDNIRVGRPDATDEEMRA-----------AAERAQAHDFIERKPDGYDTVVGERG 469
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+ SGG R R+A+ARAL P +L+LDE T+ LD
Sbjct: 470 RQLSGGERQRLAIARALLKDPPILILDEATSALD 503
Score = 33.0 bits (76), Expect = 0.48
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 519 RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAI 563
RQLS G++ R+ A + P +L+LDE T+ LD+ET + A+
Sbjct: 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL 514
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 45.8 bits (108), Expect = 2e-05
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 209 EARAANILHGLGFTKEMQQK-KTKDF--SGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
R L G E++ K K F SGG + R+ +ARA+ V P +LL+DEP + LD
Sbjct: 120 RQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDP 179
Query: 266 DACVWLEEELKTYKR--ILVIISHS 288
+ +EE + K+ +VI++H+
Sbjct: 180 ISTAKVEELIHELKKDYTIVIVTHN 204
Score = 42.7 bits (100), Expect = 2e-04
Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 40/219 (18%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI--YGDLTPSVGM 457
I ++V+F Y D + + I+ + +A +GP+G GKST L L DL P+ +
Sbjct: 4 IDARDVNFWYGDFHA--LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRL 61
Query: 458 --------------------VRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDR 497
+RKN + F R + + + + Y L+ VKD
Sbjct: 62 EGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFE----NVAYGLR-VNGVKDN 116
Query: 498 EEMRKIIGRYGLTGRQQVCPIRQ--------LSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
+R+ + L G ++ LS GQ+ R+ A +P +LL+DEP +
Sbjct: 117 AFIRQRVEE-TLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS 175
Query: 550 HLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEE 586
LD + + + I++ + +V+V+H+ + +V+++
Sbjct: 176 ALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDK 214
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 45.9 bits (109), Expect = 3e-05
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISH 287
SGG + R+ +ARA+ V+P ++L+DEP + LD + + +EE + K ++I++H
Sbjct: 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTH 208
Score = 29.8 bits (67), Expect = 4.5
Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 46/156 (29%)
Query: 431 ALVGPNGAGKSTLLNLI--YGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLD--- 485
A +GP+G GKST+L DL P R + F H L D+ P++
Sbjct: 40 AFIGPSGCGKSTILRCFNRLNDLIPG---FRVEGKVTF-----HGKNLYAPDVDPVEVRR 91
Query: 486 ---YMLQS---FPE-VKD-----------REEMRKIIGRYGLTGRQQVC------PIRQ- 520
+ Q FP+ + D + +M +++ R + RQ ++Q
Sbjct: 92 RIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVER---SLRQAALWDEVKDKLKQS 148
Query: 521 ---LSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLD 552
LS GQ+ R+ A +A Q P ++L+DEP + LD
Sbjct: 149 GLSLSGGQQQRLCIARAIAVQ-PEVILMDEPCSALD 183
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 45.7 bits (108), Expect = 3e-05
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHS 288
SGG + R+ +ARAL P +LL+DEPT+ LD + +EE +LK K +VI++H+
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHN 213
Score = 37.2 bits (86), Expect = 0.016
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 418 RNLEFGIDLDTRLALVGPNGAGKSTL---LNLIYGDLTPSVGM----------------- 457
+N+ I + A++GP+G GKST LNL+ + P+V +
Sbjct: 29 KNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI-QMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 458 ---VRKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDR-EEMRKIIGRYGLTGR 512
+RKN + F + + + D + P + ++ ++++ E+ K + +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 513 QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
+ LS GQ+ R+ A P +LL+DEPT+ LD
Sbjct: 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 46.3 bits (110), Expect = 3e-05
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR----ILVIISH 287
+FSGG R R+ +A AL +P LL+ DEPT LD+ + L KR +++I+H
Sbjct: 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220
Query: 288 SQDFLNGVCTNII 300
+ G+C ++
Sbjct: 221 DLGVVAGICDKVL 233
Score = 32.4 bits (74), Expect = 0.62
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA-----LADAINDFEGGLVLVS 574
+ S G + RV+ A P LL+ DEPT LD+ T+ A L + +F +++++
Sbjct: 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDV-TVQAQIMTLLNELKREFNTAIIMIT 219
Query: 575 HD 576
HD
Sbjct: 220 HD 221
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 45.4 bits (108), Expect = 3e-05
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISH 287
SGG + R+ +AR + ++P +LLLDEP + LD + +EE ELK + VI++H
Sbjct: 158 SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTV-VIVTH 213
Score = 38.8 bits (91), Expect = 0.004
Identities = 55/203 (27%), Positives = 82/203 (40%), Gaps = 70/203 (34%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLL---NLIY 448
P I V+N++F Y + L+ I+LD A +GP+G GKSTLL N +Y
Sbjct: 10 APSKIQVRNLNFYYGK-----FHALK-NINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63
Query: 449 GDLTPS---------------------------VGMV-RKNSHLRFARYHQ-----HLHE 475
+L P VGMV +K + + Y L E
Sbjct: 64 -ELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFE 122
Query: 476 LL---DLDISPLDYMLQS---FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRV 529
L ++D +++ L + EVKD+ + + G + LS GQ+ R+
Sbjct: 123 KLSRAEMD-ERVEWALTKAALWNEVKDK------LHQSGYS----------LSGGQQQRL 165
Query: 530 VFAYLAWQAPHLLLLDEPTNHLD 552
A P +LLLDEP + LD
Sbjct: 166 CIARGIAIRPEVLLLDEPCSALD 188
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 45.7 bits (108), Expect = 3e-05
Identities = 58/205 (28%), Positives = 77/205 (37%), Gaps = 38/205 (18%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI--DIFHLTREMPASDKSALTCVMEVDEE 170
G ++G NG GKSTLL L P H+ D H+ AS + A
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHY--ASKEVAR--------- 81
Query: 171 RVRLEKLAEQLVACEDDESQE---------QLMDIYDRLDDISADTAEARAANILHGLGF 221
R+ LA+ D QE Q + R +D A T +A I H
Sbjct: 82 --RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH---- 135
Query: 222 TKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR- 280
+ + SGG R R +A L + ++LLDEPT LD+ + L E L R
Sbjct: 136 ---LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE 192
Query: 281 ---ILVIISHSQDFLNGVCTNIIHL 302
L + H LN C HL
Sbjct: 193 KGYTLAAVLHD---LNQACRYASHL 214
Score = 43.4 bits (102), Expect = 2e-04
Identities = 56/189 (29%), Positives = 82/189 (43%), Gaps = 27/189 (14%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMV-RKNSHL-RFARYH--QHLHELLDLDISPLDY 486
A++GPNG GKSTLL + +TP+ G V H+ +A + + L +P D
Sbjct: 37 AIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96
Query: 487 MLQS------FPEV--------KDREEMRKIIGRYGLT--GRQQVCPIRQLSDGQKCRVV 530
+Q +P +D E + K + G+T Q V LS GQ+ R
Sbjct: 97 TVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV---DTLSGGQRQRAW 153
Query: 531 FAYLAWQAPHLLLLDEPTNHLDM-ETID--ALADAINDFEG-GLVLVSHDFRLINQVAEE 586
A + Q ++LLDEPT LD+ ID L +N +G L V HD + A
Sbjct: 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASH 213
Query: 587 IWICENGKV 595
+ GK+
Sbjct: 214 LIALREGKI 222
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 46.7 bits (111), Expect = 4e-05
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 49/177 (27%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGNREVP------------VPDHIDIF 147
LL+D + + G+ +LG GSGKSTLL ++L E+ VP I
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWI- 732
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
M A+ + ++ DEE +LA+ + + + AD
Sbjct: 733 -----MNATVRGN---ILFFDEEDA--ARLADAVRVSQ-----------------LEADL 765
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
A+ G G E+ +K + SGG + R++LARA+Y + LLD+P + LD
Sbjct: 766 AQL-------GGGLETEIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
Score = 34.4 bits (79), Expect = 0.23
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 403 QNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLL 444
+ V RY + P + R + F I ++ +VG G+GKSTLL
Sbjct: 1312 EGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLL 1353
Score = 30.1 bits (68), Expect = 4.4
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 21/98 (21%)
Query: 49 PEEISPE-EALCRKLEADAKLNAEARACTGSLAVHPKS------RDVKIANFSITFHGCE 101
P E PE + LE + A TG++ + P S V+ S+ F G +
Sbjct: 1261 PHEDMPELDEEVDALE---RRTGMAADVTGTVVIEPASPTSAAPHPVQAG--SLVFEGVQ 1315
Query: 102 L---------LQDTMLELNCGRRYGLLGLNGSGKSTLL 130
+ L+ + + G++G GSGKSTLL
Sbjct: 1316 MRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLL 1353
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 45.4 bits (108), Expect = 4e-05
Identities = 53/256 (20%), Positives = 89/256 (34%), Gaps = 59/256 (23%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
+ F+ + L I + ++G NGAGKSTLLN I GDL P+ G
Sbjct: 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQ 62
Query: 458 V--------RKNSH---LRFARYHQHLHELLDLDISPLDYMLQSFPEV---------KDR 497
+ +K+ AR Q D + + PE+ + R
Sbjct: 63 ILIDGVDVTKKSVAKRANLLARVFQ-------------DPLAGTAPELTIEENLALAESR 109
Query: 498 EEMRKIIGRYGLTGRQQV----------------CPIRQLSDGQKCRVVFAYLAWQAPHL 541
+ R + R I LS GQ+ + P +
Sbjct: 110 GKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKI 169
Query: 542 LLLDEPTNHLDMET----IDALADAINDFEGGLVLVSHDFRLINQVAEEIWICENGKVTK 597
LLLDE T LD +T ++ A + + + ++V+H+ + + +GK+
Sbjct: 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI-- 227
Query: 598 WEGNILDYKETLRAKV 613
+LD +A +
Sbjct: 228 ----VLDVTGEEKASL 239
Score = 44.6 bits (106), Expect = 7e-05
Identities = 47/173 (27%), Positives = 69/173 (39%), Gaps = 25/173 (14%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVP-----DHIDIFHLTREMPASD 157
L LE+ G ++G NG+GKSTLL + P D +D+ +
Sbjct: 22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVA----- 76
Query: 158 KSALTCVMEVDEERV---RLEKLAEQLVACED---DESQEQLMDIYDRLDDISADTAEAR 211
K A RV L A +L E+ ES+ + + L++ + R
Sbjct: 77 KRANLLA------RVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRER 130
Query: 212 AANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
A + GLG + + SGG R ++L A P +LLLDE T LD
Sbjct: 131 LARL--GLGLENRLSDRIGL-LSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 45.9 bits (108), Expect = 4e-05
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYK 279
K+ K SGG + R+ +ARA+ ++P +LL+DEPT+ LD A +EE ELK K
Sbjct: 216 KDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-K 274
Query: 280 RILVIISHS 288
++I++HS
Sbjct: 275 YSIIIVTHS 283
Score = 38.6 bits (89), Expect = 0.008
Identities = 51/233 (21%), Positives = 95/233 (40%), Gaps = 42/233 (18%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
V ++N +F Y + + +L I + A +GP+G GKST L +L ++
Sbjct: 80 VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLR----NLNQLNDLI 135
Query: 459 RKNSH---LRFARYHQHLHELLDLDI---------SPLDYMLQSFPEV---------KDR 497
SH + F + ++ L++ P + + F V DR
Sbjct: 136 EGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDR 195
Query: 498 EEMRKIIGRYGLTGRQQVCPIRQ--------LSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
+ + KI+ + L ++ LS GQ+ R+ A P +LL+DEPT+
Sbjct: 196 KILEKIVEK-SLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTS 254
Query: 550 HLDMETIDALADAINDFEG--GLVLVSHDFRLINQVAEEI------WICENGK 594
LD + + I + + +++V+H ++++E WI E G+
Sbjct: 255 ALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 45.5 bits (108), Expect = 4e-05
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHS 288
SGG + R+ +ARA+ V P ++L+DEP + LD A +EE EL+ I VI++HS
Sbjct: 165 SGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTI-VIVTHS 221
Score = 35.5 bits (82), Expect = 0.069
Identities = 59/232 (25%), Positives = 87/232 (37%), Gaps = 81/232 (34%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLD----TRLALVGPNGAGKSTLLNL------ 446
+ ++VS Y + + F +DLD T A +GP+G GKST L
Sbjct: 17 EIKMRARDVSVFYGE------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND 70
Query: 447 -----------------IYG------DLTPSVGMV--RKN----SHLRFARYHQHLHELL 477
IY +L VGMV + N S Y +H L
Sbjct: 71 TIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLA 130
Query: 478 DLDISPLDYMLQS-------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVV 530
+ LD ++++ + EVKDR + G TG LS GQ+ R+
Sbjct: 131 R-SKAELDEIVETSLRKAGLWEEVKDR------LHEPG-TG---------LSGGQQQRLC 173
Query: 531 FAYLAWQAPHLLLLDEPTNHLD-------METIDALADAINDFEGGLVLVSH 575
A +P ++L+DEP + LD E ID L +V+V+H
Sbjct: 174 IARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYT-----IVIVTH 220
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 45.4 bits (107), Expect = 4e-05
Identities = 50/212 (23%), Positives = 92/212 (43%), Gaps = 23/212 (10%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+K+ N ++ + + L++ +++ L+G +G GKST + L NR + D I
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCL-NR---MNDLIKNC 68
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD------RLD 201
+ ++ + + E D + V L K + + M IYD R+
Sbjct: 69 RIEGKVSIEGED----IYEPDVDVVELRKNVGMVF----QKPNPFPMSIYDNVAYGPRIH 120
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTK---DFSGGWRMRIALARALYVKPHLLLLDE 258
+ + N L E + SGG + R+ +AR L VKP ++L DE
Sbjct: 121 GANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180
Query: 259 PTNHLDLDACVWLEEELKTYKR--ILVIISHS 288
PT+ LD + +E+ + K+ +VI++H+
Sbjct: 181 PTSALDPISTARIEDLIMNLKKDYTIVIVTHN 212
Score = 37.7 bits (87), Expect = 0.013
Identities = 52/232 (22%), Positives = 92/232 (39%), Gaps = 59/232 (25%)
Query: 395 IPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNL-------- 446
+ P I V+N++ Y + +N+ I ++ AL+GP+G GKST +
Sbjct: 8 VAQPQIKVENLNLWYGEKQA--LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLI 65
Query: 447 ---------------IYG------DLTPSVGMVRKN------SHLRFARYHQHLHELLDL 479
IY +L +VGMV + S Y +H
Sbjct: 66 KNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKK 125
Query: 480 DISPL-DYMLQS---FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLA 535
D+ + + L+S + E DR + P LS GQ+ R+ A
Sbjct: 126 DLDGVVENALRSAALWDETSDRLK----------------SPALSLSGGQQQRLCIARTL 169
Query: 536 WQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAE 585
P ++L DEPT+ LD + + D I + + +V+V+H+ + ++++
Sbjct: 170 AVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISD 221
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 45.3 bits (108), Expect = 5e-05
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 396 PPPVIMVQNVSFRYSDDGP-WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS 454
P++ V+ ++ Y GP R++ F + L +VG +G+GK+TLLN + L P
Sbjct: 3 DQPLLSVRGLTKLY---GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD 59
Query: 455 VGMVR 459
G V
Sbjct: 60 AGEVH 64
Score = 43.4 bits (103), Expect = 2e-04
Identities = 51/188 (27%), Positives = 75/188 (39%), Gaps = 45/188 (23%)
Query: 98 HGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASD 157
GC +D +L G G++G +GSGK+TLL L R PD ++ + R+ D
Sbjct: 20 KGC---RDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRD 74
Query: 158 KSALTCVMEVDEERVRLEKLAEQLVACEDDESQ-------------EQLMDI----YDRL 200
AL+ + ER RL + V E+LM + Y +
Sbjct: 75 LYALS-----EAERRRLLRTEWGFV--HQHPRDGLRMQVSAGGNIGERLMAVGARHYGDI 127
Query: 201 DDISADTAEARAANILHGLGFTKEMQQKKTKD----FSGGWRMRIALARALYVKPHLLLL 256
+ D E E+ + D FSGG + R+ +AR L P L+ +
Sbjct: 128 RATAGDWLE------------RVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFM 175
Query: 257 DEPTNHLD 264
DEPT LD
Sbjct: 176 DEPTGGLD 183
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 44.6 bits (105), Expect = 5e-05
Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 14/185 (7%)
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV--- 458
V + F Y D + + + F + L L G NGAGK+TLL LI G L P G +
Sbjct: 4 VIELDFDYHDQ--PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFE 61
Query: 459 RKNSHLRFARYHQHL----HEL-LDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQ 513
R++ Y + L H ++ ++ + L + ++ + L
Sbjct: 62 RQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSL-EHL 120
Query: 514 QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFE---GGL 570
P LS GQK +V L L LLDEP LD ++ + I + G +
Sbjct: 121 IDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180
Query: 571 VLVSH 575
+L SH
Sbjct: 181 LLTSH 185
Score = 28.4 bits (63), Expect = 8.7
Identities = 17/58 (29%), Positives = 23/58 (39%)
Query: 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+ +H LLQ L G L G NG+GK+TLL ++ P I
Sbjct: 4 VIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFE 61
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 45.4 bits (108), Expect = 5e-05
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL----KTYKRIL 282
+K K SGG R R+A+ R L +P + LLDEP ++LD V + E+ K R +
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187
Query: 283 VIISHSQ 289
+ ++H Q
Sbjct: 188 IYVTHDQ 194
Score = 41.9 bits (99), Expect = 7e-04
Identities = 46/163 (28%), Positives = 67/163 (41%), Gaps = 53/163 (32%)
Query: 424 IDLDTR----LALVGPNGAGKSTLLNLIYG-----------------DLTPS---VGMVR 459
I+LD + VGP+G GKSTLL +I G D+ P+ VGMV
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMV- 80
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSF---------PEVKDR-EEMRKIIGRYGL 509
F Y + H +S + M SF E+ R ++ +++ L
Sbjct: 81 ------FQSYALYPH------LSVAENM--SFGLKLAGAKKEEINQRVNQVAEVLQLAHL 126
Query: 510 TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
R+ + LS GQ+ RV P + LLDEP ++LD
Sbjct: 127 LDRKP----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 45.1 bits (107), Expect = 5e-05
Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 25/219 (11%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
++ ++ VSF + I+ N+ + A++GP+G GK+TLL LI G + P G +
Sbjct: 7 LVDMRGVSFTRGNRC--IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 459 RKNSHLRFARYHQHLHEL------------LDLDISPLD---YMLQ---SFPEVKDREEM 500
+ A L+ + L D++ D Y L+ P +
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV 124
Query: 501 RKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALA 560
+ GL G ++ P +LS G R A P L++ DEP D T+ L
Sbjct: 125 MMKLEAVGLRGAAKLMP-SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLV 183
Query: 561 DAINDFEGGL----VLVSHDFRLINQVAEEIWICENGKV 595
I++ L V+VSHD + +A+ +I + K+
Sbjct: 184 KLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKI 222
Score = 35.1 bits (81), Expect = 0.080
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEP 259
+ SGG R ALARA+ ++P L++ DEP
Sbjct: 143 ELSGGMARRAALARAIALEPDLIMFDEP 170
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 45.9 bits (109), Expect = 5e-05
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 31/220 (14%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I++ +VS+ Y I ++ I ++++ +VG +G+GKSTL L+ G G +
Sbjct: 474 IVINDVSYSYGYGSN-ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL 532
Query: 460 KNSHL--RFARY--HQHL----HELLDLDISPLD-YMLQSFPEVKDRE--------EMRK 502
N R+ Q + E S L+ +L + V E E++
Sbjct: 533 LNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKD 592
Query: 503 IIGRYGLTGRQQVCPIR--QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET----I 556
I L G Q +S GQK R+ A +L+LDE T++LD T +
Sbjct: 593 DIENMPL-GYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIV 651
Query: 557 DALADAINDFEGGLVLVSHDFRL-INQVAEEIWICENGKV 595
+ L +N + ++ V+H RL + + +++I + ++GK+
Sbjct: 652 NNL---LNLQDKTIIFVAH--RLSVAKQSDKIIVLDHGKI 686
Score = 45.1 bits (107), Expect = 1e-04
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK 158
G +L D L + + ++G++GSGKSTL +L I + + D+
Sbjct: 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG--FSLKDIDR 543
Query: 159 SAL-TCVMEVDEERVR-----LEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARA 212
L + + +E LE L L+ +++ SQ+++ + + AE +
Sbjct: 544 HTLRQFINYLPQEPYIFSGSILENL---LLGAKENVSQDEI--------WAACEIAEIKD 592
Query: 213 ANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
LG+ E+ ++ + SGG + RIALARAL +L+LDE T++LD
Sbjct: 593 DIENMPLGYQTELSEEGS-SISGGQKQRIALARALLTDSKVLILDESTSNLDT 644
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 45.0 bits (106), Expect = 5e-05
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR-- 280
K+ + SGG + R+ +AR L VKP ++LLDEPT+ LD + +E L +
Sbjct: 139 KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQY 198
Query: 281 ILVIISHS 288
+++++HS
Sbjct: 199 TIILVTHS 206
Score = 34.6 bits (79), Expect = 0.10
Identities = 46/174 (26%), Positives = 62/174 (35%), Gaps = 60/174 (34%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLL-----------------------NLIYG------ 449
GIDLD AL+GP+G GKST L IY
Sbjct: 23 GIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82
Query: 450 DLTPSVGMV-RKNSHLRFARYHQHL----------HELLDLDISPLDYMLQSFPEVKDRE 498
L VGMV ++ + F+ Y + +LD + + EVKD
Sbjct: 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHL 142
Query: 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
+ LS GQ+ RV A + P ++LLDEPT+ LD
Sbjct: 143 HESAL----------------SLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 44.6 bits (105), Expect = 7e-05
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 194 MDIYD------RLDDISADTAEARAANILHGLGFTKEMQQK---KTKDFSGGWRMRIALA 244
M I+D RL+ D + R + L G E++ K SGG + R+ +A
Sbjct: 103 MSIFDNVAFGLRLNRYKGDLGD-RVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIA 161
Query: 245 RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISHS 288
RA+ +P +LLLDEP + LD A +EE + K+ + +++H+
Sbjct: 162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHN 207
Score = 30.0 bits (67), Expect = 3.4
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFR 578
LS GQ+ R+ A P +LLLDEP + LD + + + + + + LV+H+ +
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQ 209
Query: 579 LINQVAE 585
+VA+
Sbjct: 210 QAIRVAD 216
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 44.8 bits (106), Expect = 7e-05
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 19/177 (10%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLN----LIYGDLTPSV 455
+ V++++ +Y++ G + N+ F I R+ L+G G+GKSTLL+ L+ + +
Sbjct: 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQI 62
Query: 456 GMVRKNSHLRFARYHQH---LHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR 512
V NS + ++ + + + + + L + + D EE+ K+ GL
Sbjct: 63 DGVSWNS-VPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSD-EEIWKVAEEVGLKSV 120
Query: 513 QQVCPIRQ----------LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559
+ P + LS G K + A +LLLDEP+ HLD T +
Sbjct: 121 IEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVI 177
Score = 34.4 bits (79), Expect = 0.13
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 25/102 (24%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLN 293
S G + + LAR++ K +LLLDEP+ HLD TY+ I + + F +
Sbjct: 140 SHGHKQLMCLARSVLSKAKILLLDEPSAHLD----------PITYQVIRKTLKQA--FAD 187
Query: 294 GVCTNIIHLDKRKLKYYGGNYEAF--CKTRLELLENQMKQYN 333
CT I L + ++ EA C+ L + EN+++QY+
Sbjct: 188 --CTVI--LSEHRI-------EAMLECQRFLVIEENKVRQYD 218
Score = 33.7 bits (77), Expect = 0.23
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 99 GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
G +L++ ++ G+R GLLG GSGKSTLL+
Sbjct: 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAF 50
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 45.2 bits (107), Expect = 8e-05
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 206 DTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
A AR A +L +G E + +FSGG R RI +ARAL + P +++ DE + LD+
Sbjct: 437 KAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV 496
Score = 38.3 bits (89), Expect = 0.013
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
SGG R R+ +A AL +P +L+ DEPT LD+
Sbjct: 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDV 201
Score = 37.9 bits (88), Expect = 0.017
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDA-LADAIN----DFEGGLVLVS 574
QLS G + RV+ A P +L+ DEPT LD+ TI A + I + G++ ++
Sbjct: 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDV-TIQAQILQLIKVLQKEMSMGVIFIT 226
Query: 575 HDFRLINQVAEEIWICENGK 594
HD ++ ++A+ + + G+
Sbjct: 227 HDMGVVAEIADRVLVMYQGE 246
Score = 29.1 bits (65), Expect = 8.2
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM----ETIDALADAINDFEGGLVLVSH 575
+ S GQ+ R+ A P +++ DE + LD+ + I+ L D DF + +SH
Sbjct: 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISH 522
Query: 576 DFRLINQVAEEIWICENGKV 595
D ++ +++ + + G++
Sbjct: 523 DMAVVERISHRVAVMYLGQI 542
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 44.7 bits (106), Expect = 8e-05
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 512 RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM----ETIDALADAINDFE 567
R V P QLS G RV+ A P LL+ DEPT LD+ + I+ L +
Sbjct: 146 RLDVYP-HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN 204
Query: 568 GGLVLVSHDFRLINQVAEEIWICENGKV 595
LVL++HD L+ + A +I + G+V
Sbjct: 205 MALVLITHDLALVAEAAHKIIVMYAGQV 232
Score = 35.5 bits (82), Expect = 0.076
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR----ILVIISH 287
SGG R+ +A A+ +P LL+ DEPT LD+ + E L ++ LV+I+H
Sbjct: 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITH 212
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 45.4 bits (107), Expect = 9e-05
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK----RILVIIS 286
K SGG + RIA+ARAL +P +LLLDE T+ LD ++ +E+ + K + ++ I+
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 287 H 287
H
Sbjct: 1417 H 1417
Score = 42.7 bits (100), Expect = 6e-04
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK----RILVIISH 287
SGG + RI++ARA+ P +L+LDE T+ LD + +++ + K RI +II+H
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAH 638
Score = 41.9 bits (98), Expect = 0.001
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 400 IMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI--YGDLTPSVG 456
I + +V+FRY S IY++L F D A+VG G+GKST+++L+ + DL
Sbjct: 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHH 1225
Query: 457 MVRKNSH 463
+V KN H
Sbjct: 1226 IVFKNEH 1232
Score = 36.2 bits (83), Expect = 0.061
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 400 IMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG-M 457
I +NV F Y + IY++L F + A VG +G GKST+L LI P+ G +
Sbjct: 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442
Query: 458 VRKNSH 463
+ +SH
Sbjct: 443 IINDSH 448
Score = 36.2 bits (83), Expect = 0.069
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG----LVLVSH 575
+LS GQK R+ A + P +L+LDE T+ LD ++ + IN+ +G ++++H
Sbjct: 579 KLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAH 638
Query: 576 DFRLINQVAEEIWIC---ENGKVTKWEGNILDYKETLRAKVLKEKNKSAAVSNGKK 628
I + A I++ E G + D + + K +N
Sbjct: 639 RLSTI-RYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNN 693
Score = 35.8 bits (82), Expect = 0.076
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 484 LDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543
+D ++S P D +G YG + LS GQK R+ A + P +LL
Sbjct: 1337 IDEFIESLPNKYDTN-----VGPYG----------KSLSGGQKQRIAIARALLREPKILL 1381
Query: 544 LDEPTNHLDMETIDALADAINDFE 567
LDE T+ LD + + I D +
Sbjct: 1382 LDEATSSLDSNSEKLIEKTIVDIK 1405
Score = 29.2 bits (65), Expect = 7.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 84 KSRDVKIANF-SITFH-----GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
K +D+K F ++ FH E+ +D L G+ Y +G +G GKST+L ++
Sbjct: 376 KLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLI 431
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 45.3 bits (107), Expect = 1e-04
Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 29/194 (14%)
Query: 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH-------IDIFHLTREMPASD 157
D E G+ ++G G+GK+TL+ +L + V P IDI +TRE S
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGIDINTVTRE---SL 407
Query: 158 KSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAAN--I 215
+ ++ V + + + + E + + + E++ + A+A AA+ I
Sbjct: 408 RKSIATVFQ--DAGLFNRSIRENIRLGREGATDEEVYE-----------AAKAAAAHDFI 454
Query: 216 LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEEL 275
L + ++ SGG R R+A+ARA+ +L+LDE T+ LD++ ++ +
Sbjct: 455 LKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI 514
Query: 276 KTYK--RILVIISH 287
+ R II+H
Sbjct: 515 DALRKNRTTFIIAH 528
Score = 44.1 bits (104), Expect = 2e-04
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 30/188 (15%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM-- 457
+ ++++F +++ + ++ F +A+VGP GAGK+TL+NL+ P+VG
Sbjct: 335 VEFRHITFEFANSSQGV-FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393
Query: 458 --------VRKNSHLR--FARYHQHLHELLDLDISP---LDYMLQSFPEVKDREE----- 499
V + S LR A Q L + I L + EV + +
Sbjct: 394 IDGIDINTVTRES-LRKSIATVFQDAG-LFNRSIRENIRLGREGATDEEVYEAAKAAAAH 451
Query: 500 ---MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETI 556
+++ G L G + +LS G++ R+ A + +L+LDE T+ LD+ET
Sbjct: 452 DFILKRSNGYDTLVGERG----NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETE 507
Query: 557 DALADAIN 564
+ +AI+
Sbjct: 508 ARVKNAID 515
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 43.9 bits (104), Expect = 1e-04
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISH 287
SGG + R+ +ARA+ V+P +LL+DEP + LD + + +E+ ELK I VI++H
Sbjct: 150 SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTI-VIVTH 205
Score = 33.5 bits (77), Expect = 0.24
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFR 578
LS GQ+ R+ A P +LL+DEP + LD + A+ D IN+ + +V+V+H+ +
Sbjct: 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQ 208
Query: 579 LINQVAE 585
+V++
Sbjct: 209 QAARVSD 215
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 44.1 bits (104), Expect = 1e-04
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 15/75 (20%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHSQD 290
SGG + R+ +AR L ++P ++L+DEPT+ LD + + +EE ELK I +I++H+
Sbjct: 169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSI-IIVTHNMQ 227
Query: 291 -----------FLNG 294
FLNG
Sbjct: 228 QAARISDKTAFFLNG 242
Score = 34.1 bits (78), Expect = 0.19
Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 62/196 (31%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLN------------- 445
V QN++ Y +D +N+ I + A++GP+G GKST +
Sbjct: 24 VFDTQNLNLWYGEDHA--LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVK 81
Query: 446 ----LIYGD------------LTPSVGMVRKN------SHLRFARYHQHLHELLDLDISP 483
++Y D L +VGMV + S Y +H + D
Sbjct: 82 TTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKT-- 139
Query: 484 LDYMLQS-------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAW 536
LD +++ + E+KDR YGL+G GQ+ R+ A
Sbjct: 140 LDEIVEKSLRGAAIWDELKDRLHDNA----YGLSG------------GQQQRLCIARCLA 183
Query: 537 QAPHLLLLDEPTNHLD 552
P ++L+DEPT+ LD
Sbjct: 184 IEPDVILMDEPTSALD 199
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 43.7 bits (104), Expect = 1e-04
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 26/179 (14%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLGNREVPVPDH---- 143
N + ++ +++ D LE+N G GLLG NG+GK+T ++G + PD
Sbjct: 6 VAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVG---LVRPDSGKIL 62
Query: 144 IDIFHLTREMPASDKSALTCVMEVDEERVRL--EKLAEQLVACEDDESQEQLMDIYD-RL 200
+D +T+ +P +R RL L ++ ++ +M + + R
Sbjct: 63 LDDEDITK-LPM-------------HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIRE 108
Query: 201 DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEP 259
D+ + +L T ++ K SGG R R+ +ARAL P +LLDEP
Sbjct: 109 KDLKKAERKEELDALLEEFHITH-LRDSKAYSLSGGERRRVEIARALAANPKFILLDEP 166
Score = 36.0 bits (84), Expect = 0.035
Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 48/148 (32%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPL------- 484
L+GPNGAGK+T +I G + P G + L D DI+ L
Sbjct: 35 LLGPNGAGKTTTFYMIVGLVRPDSGKI----------------LLDDEDITKLPMHKRAR 78
Query: 485 ---DYMLQS---FPE--VKD--------REEMRKIIGR----YGLTGRQQVCPIR----- 519
Y+ Q F + V+D RE+ K R L + +R
Sbjct: 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAY 138
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEP 547
LS G++ RV A P +LLDEP
Sbjct: 139 SLSGGERRRVEIARALAANPKFILLDEP 166
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 42.7 bits (101), Expect = 1e-04
Identities = 35/159 (22%), Positives = 52/159 (32%), Gaps = 44/159 (27%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQ 489
+ GPNG+GKST+L+ I + + S R + I
Sbjct: 24 TIITGPNGSGKSTILDAI------GLALGGAQSATRRRSGVKAGC------IVAAVSA-- 69
Query: 490 SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRV----VFAYLAWQAPHLLLLD 545
QLS G+K + A + + L +LD
Sbjct: 70 ---------------------ELIFTRL--QLSGGEKELSALALILALASLKPRPLYILD 106
Query: 546 EPTNHLDMETIDALADAINDF--EGGLVLV-SHDFRLIN 581
E LD ALA+AI + +G V+V +H L
Sbjct: 107 EIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE 145
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 43.8 bits (103), Expect = 1e-04
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLE---EELKTYK 279
K+ + + SGG + R+ +AR + VKP ++L+DEP + LD + + +E EELK K
Sbjct: 139 KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-K 197
Query: 280 RILVIISHS 288
++I++H+
Sbjct: 198 YTIIIVTHN 206
Score = 28.8 bits (64), Expect = 7.2
Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEG--GLVLVSHDF 577
+LS GQ+ R+ A P ++L+DEP + LD + + + I + + +++V+H+
Sbjct: 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNM 207
Query: 578 RLINQVAE 585
+ +V++
Sbjct: 208 QQAARVSD 215
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 43.8 bits (103), Expect = 1e-04
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 13/75 (17%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISHSQD 290
SGG + R+ +AR L +KP +LLLDEP + LD + +EE + K ++I++H+
Sbjct: 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQ 224
Query: 291 -----------FLNG 294
FLNG
Sbjct: 225 QALRVSDRTAFFLNG 239
Score = 41.5 bits (97), Expect = 7e-04
Identities = 64/279 (22%), Positives = 112/279 (40%), Gaps = 72/279 (25%)
Query: 395 IPPP---VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI--YG 449
P ++ V+++S Y + ++ I+ AL+GP+G GKST L I
Sbjct: 14 FPEAKEHILEVKDLSIYYGEKRA--VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMN 71
Query: 450 DLTPS---------------------------VGMV-RKNSHLRFARYHQHLHELL---D 478
DL PS +GMV +K + + Y+ H L +
Sbjct: 72 DLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGE 131
Query: 479 LDISPLDYMLQS-------FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVF 531
S LD +++ + EVKDR + L+ LS GQ+ R+
Sbjct: 132 RRKSVLDEIVEESLTKAALWDEVKDR------LHSSALS----------LSGGQQQRLCI 175
Query: 532 AYLAWQAPHLLLLDEPTNHLD---METIDALADAINDFEGGLVLVSHDFRLINQVAEEIW 588
A P +LLLDEP + LD I+ L + + E +++V+H+ + +V++
Sbjct: 176 ARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTA 234
Query: 589 ICENGKVTKWEGNILDYKETLRAKVLKEKNKSAAVSNGK 627
NG + ++Y +T + ++ K+ NG+
Sbjct: 235 FFLNGDL-------VEYDQTEQIFTSPKQQKTEDYINGR 266
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 43.1 bits (101), Expect = 2e-04
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYK 279
K+ ++K SGG + R+ +ARA+ +KP +LL+DEP + LD + +EE ELK
Sbjct: 152 KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQY 211
Query: 280 RILVIISHSQ 289
I+++ + Q
Sbjct: 212 TIIMVTHNMQ 221
Score = 29.6 bits (66), Expect = 4.7
Identities = 45/167 (26%), Positives = 66/167 (39%), Gaps = 66/167 (39%)
Query: 430 LALVGPNGAGKSTLL-----------------NLIYGD------------LTPSVGMV-- 458
+A +GP+G GKSTLL L+Y D L VGMV
Sbjct: 49 IAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQ 108
Query: 459 RKN-------SHLRFAR----YHQHLHELLDLDISPLDYMLQS--FPEVKDREEMRKIIG 505
R N ++ FA Y +L EL++ D + ++ + EVKD+ + +
Sbjct: 109 RPNPFPKSIYENIAFAPRANGYKGNLDELVE------DSLRRAAIWEEVKDKLKEKGT-- 160
Query: 506 RYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD 552
LS GQ+ R+ A P +LL+DEP + LD
Sbjct: 161 --------------ALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 42.2 bits (99), Expect = 4e-04
Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 42/222 (18%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+++ N + F +L++ L++ L+G +G GKST + L NR + D I F
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTL-NR---MNDLIPGF 59
Query: 148 HLTREMPASDKSALTCVMEVDEERVRL---------------EKLAEQL-VACEDDESQE 191
+ ++V E R ++ + +A L + EDDE
Sbjct: 60 RHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDE--- 116
Query: 192 QLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD---FSGGWRMRIALARALY 248
D E R L E++ K K SGG + R+ +AR +
Sbjct: 117 --------------DFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA 162
Query: 249 VKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISHS 288
V P ++L+DEP + LD + +E+ + K +VI++H+
Sbjct: 163 VSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN 204
Score = 36.1 bits (83), Expect = 0.037
Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 60/239 (25%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLL-------NLIYG-- 449
I V+N++ + D I +N+ I ++ AL+GP+G GKST + +LI G
Sbjct: 3 RIEVENLNTYFDDAH--ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 450 --------------------DLTPSVGMVRKN------SHLRFARYHQHLHELLDLDI-- 481
+L VGMV + S Y +H D D
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 482 SPLDYMLQS---FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA 538
++ L++ + EVKD+ + + GL+G GQ+ R+ A +
Sbjct: 121 ERVEESLKAAALWDEVKDKLDKSAL----GLSG------------GQQQRLCIARTIAVS 164
Query: 539 PHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKV 595
P ++L+DEP + LD + + D I+ + +V+V+H+ + +V++ NG++
Sbjct: 165 PEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEI 223
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 42.4 bits (99), Expect = 4e-04
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 517 PIRQLSDGQKCRVVFAYLAWQAPH---LLLLDEPTNHLDMETIDALADAINDFEGG---L 570
I+ +SDG K + A LLL+DEP N L + + L + + + L
Sbjct: 186 LIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQL 245
Query: 571 VLVSHDFRLIN 581
+ +H L++
Sbjct: 246 IFTTHSPLLLD 256
Score = 38.2 bits (88), Expect = 0.009
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALY---VKPHLLLLDEPTNHLDLDACVWLEEELKTYK 279
+ + K S G + +AL AL K LLL+DEP N L L E LK
Sbjct: 180 LRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELS 239
Query: 280 RI---LVIISHSQDFLN 293
L+ +HS L+
Sbjct: 240 EKGAQLIFTTHSPLLLD 256
Score = 35.5 bits (81), Expect = 0.055
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 431 ALVGPNGAGKSTLLNLIYG 449
++GPNG+GKS LL +
Sbjct: 3 VIIGPNGSGKSNLLKALAL 21
Score = 29.3 bits (65), Expect = 5.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 117 GLLGLNGSGKSTLLAVL 133
++G NGSGKS LL L
Sbjct: 3 VIIGPNGSGKSNLLKAL 19
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 42.0 bits (98), Expect = 5e-04
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY--KRILVIISHS 288
SGG + + LAR L V P +LLLDEPT+ LD +EE +++ + ++I++H+
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHN 221
Score = 35.5 bits (81), Expect = 0.060
Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 29/226 (12%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI---------- 447
P + N++ ++ G + + G +L+GP G+GK+T L +
Sbjct: 20 PAMAAVNLTLGFA--GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGY 77
Query: 448 --YGD-LTPSVGMVRKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVK--DREEMR 501
GD L + L F R L + + +S +D +L K R+E R
Sbjct: 78 RYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFR 137
Query: 502 KI-------IGRY-GLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM 553
+ +G + + R P R LS GQ+ + A P +LLLDEPT+ LD
Sbjct: 138 GVAQARLTEVGLWDAVKDRLSDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDP 196
Query: 554 ETIDALADAINDFEGGL--VLVSHDFRLINQVAEEIWICENGKVTK 597
T + + + I L ++V+H+ ++++ + +G++ +
Sbjct: 197 TTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE 242
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 42.1 bits (99), Expect = 5e-04
Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 26/198 (13%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALT 162
L D +++ + ++G +G GKST L + NR + D ID + E+ K+
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCI-NR---MNDLIDAARVEGELTFRGKN--- 107
Query: 163 CVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD------RLDDISADTAEARAANIL 216
V + D + V L + + + + IYD ++ D + R L
Sbjct: 108 -VYDADVDPVALRRRIGMVFQKPNPFPKS----IYDNVAYGLKIQGYDGDI-DERVEESL 161
Query: 217 HGLGFTKEMQQKKTK---DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLE- 272
E++ + D SGG + R+ +ARA+ P ++L+DEP + LD A +E
Sbjct: 162 RRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIED 221
Query: 273 --EELKTYKRILVIISHS 288
EEL + +VI++H+
Sbjct: 222 LIEELAE-EYTVVIVTHN 238
Score = 34.0 bits (78), Expect = 0.17
Identities = 55/250 (22%), Positives = 91/250 (36%), Gaps = 60/250 (24%)
Query: 370 MVNQGLTDKVTTDKTVTFTFPSCGKIPP-----PVIMVQNVSFRYSDDGPWIYRNLEFGI 424
M + +D + T T T T P VI ++++ Y D+ + L+ +
Sbjct: 6 MTSDESSDGLITTTTATDT-TDPSGDPAASSGETVIEARDLNVFYGDE-----QALD-DV 58
Query: 425 DLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLH----EL 476
+D A++GP+G GKST L I R N + AR L +
Sbjct: 59 SMDIPENQVTAMIGPSGCGKSTFLRCIN----------RMNDLIDAARVEGELTFRGKNV 108
Query: 477 LDLDISP------LDYMLQS---FP-----------EVKDREEMRKIIGRYGLTG----- 511
D D+ P + + Q FP +++ + L
Sbjct: 109 YDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWD 168
Query: 512 ---RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF-- 566
Q LS GQ+ R+ A P ++L+DEP + LD + D I +
Sbjct: 169 EVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE 228
Query: 567 EGGLVLVSHD 576
E +V+V+H+
Sbjct: 229 EYTVVIVTHN 238
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 41.7 bits (98), Expect = 5e-04
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISHS 288
SGG + R+ +AR L V P ++L+DEP + LD A +E+ ++ K+ ++I++H+
Sbjct: 151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHN 207
Score = 33.6 bits (77), Expect = 0.22
Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 68/233 (29%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLL-------NLIYG-- 449
++ +N++ Y + ++ I + AL+GP+G GKSTLL +LI G
Sbjct: 6 ILSTKNLNLWYGEKHALY--DITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR 63
Query: 450 -------------DLTPSVGMVRKNSHLRFAR-------------YHQHLHELLDLDISP 483
D V +R+ + F R Y +H +
Sbjct: 64 ITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNK--KT 121
Query: 484 LDYMLQS-------FPEVKDREEMRKIIGRYGLTGRQQ--VCPIRQLSDGQKCRVVFAYL 534
LD +++ + EVKDR + L+G QQ +C R L+
Sbjct: 122 LDTIVEKSLKGAALWDEVKDRLHDSAL----SLSGGQQQRLCIARTLAVN---------- 167
Query: 535 AWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAE 585
P ++L+DEP + LD + D I D E +++V+H+ + +V++
Sbjct: 168 ----PEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSD 216
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 41.6 bits (97), Expect = 7e-04
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Query: 223 KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR-- 280
K+ SGG + R+ +AR L ++P+++L+DEPT+ LD + +EE + K
Sbjct: 141 KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESY 200
Query: 281 ILVIISHSQD-----------FLNG 294
++I++H+ FLNG
Sbjct: 201 TIIIVTHNMQQAGRISDRTAFFLNG 225
Score = 35.4 bits (81), Expect = 0.064
Identities = 44/224 (19%), Positives = 100/224 (44%), Gaps = 30/224 (13%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI--YGDLTPSVG 456
+I +N++ Y+D N+ I ++ AL+GP+G GKST L + DL +
Sbjct: 7 IIETENLNLFYTDFKA--LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64
Query: 457 MVRKNSHLRFARYHQHLHELLDLD-------ISPLDYMLQSFPEV---------KDREEM 500
+ + Y + ++L+L +P +++ + + KD++++
Sbjct: 65 IEGNVIYEGKNIYSNNF-DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKL 123
Query: 501 RKIIGR-------YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM 553
+I+ + + + LS GQ+ R+ A P+++L+DEPT+ LD
Sbjct: 124 DEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP 183
Query: 554 ETIDALADAINDFEGG--LVLVSHDFRLINQVAEEIWICENGKV 595
+ + + I + + +++V+H+ + ++++ NG +
Sbjct: 184 ISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCI 227
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 41.6 bits (98), Expect = 8e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+FSGG RI +ARAL ++P L++ DEP + LD
Sbjct: 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALD 193
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 42.1 bits (99), Expect = 8e-04
Identities = 110/564 (19%), Positives = 201/564 (35%), Gaps = 134/564 (23%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+ +A +F L+ L + G + LLG NG+GKSTL+ VL P I I
Sbjct: 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI- 64
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQL--------VACEDDESQEQLMDIYDR 199
D KLA QL ++ D+ + + + I R
Sbjct: 65 -NNINYNKLD-----------------HKLAAQLGIGIIYQELSVIDELTVLENLYI-GR 105
Query: 200 L--------DDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKP 251
+ I RAA +L +G ++ + K + S + + +A+ L +
Sbjct: 106 HLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDE-KVANLSISHKQMLEIAKTLMLDA 164
Query: 252 HLLLLDEPTNHL---DLDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLK 308
++++DEPT+ L ++D + +L+ +V ISH + +C
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRIC------------ 212
Query: 309 YYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSAKLARQAQ--SKEKT 366
D+ MK+ GS+ + S +
Sbjct: 213 ----------------------------DRYTVMKD-------GSSVCSGMVSDVSNDDI 237
Query: 367 LAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDL 426
+ MV + L ++ K V V+NV+ R D R++ F +
Sbjct: 238 VRLMVGRELQNRFNAMKENVSNLAH-----ETVFEVRNVTSR--DRKK--VRDISFSVCR 288
Query: 427 DTRLALVGPNGAGKSTLLNLIYG--------------DLTPSV-------GMV------R 459
L G G+G++ L+N ++G D++P GM R
Sbjct: 289 GEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRR 348
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDR---EEMRKIIGRYGLTGRQQVC 516
N Q++ L + F EV ++ E R+++ + Q
Sbjct: 349 DNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN-- 406
Query: 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET---IDALADAINDFEGGLVLV 573
I +LS G + +V+ + P +++ DEPT +D+ I + + D +++V
Sbjct: 407 -ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMV 465
Query: 574 SHDFRLINQVAEEIWICENGKVTK 597
S + I V + I + G++T+
Sbjct: 466 SSELPEIITVCDRIAVFCEGRLTQ 489
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 41.2 bits (97), Expect = 0.001
Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 37/232 (15%)
Query: 399 VIMVQNVSFRYSDDG----PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPS 454
+I +NVS++Y + ++ + L ++G NG+GKST+ + L PS
Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63
Query: 455 VGMV----------------RKNSHLRFARYHQHLHELL---DLDISPLDYMLQSFPEVK 495
G V R + + F + + D+ P + + E++
Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPP-EEIR 122
Query: 496 DR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD-- 552
+R +E K +G Y + LS GQK RV A + P ++ DEPT LD
Sbjct: 123 ERVDESLKKVGMY----EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178
Query: 553 --METIDALADAINDFEG-GLVLVSHDFRLINQVAEEIWICENGKVTKWEGN 601
E ++ + + +N G ++L++H + A+ I + ++GKV EG
Sbjct: 179 GRREVVNTIKE-LNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVM-EGT 227
Score = 36.2 bits (84), Expect = 0.040
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRI-------LVIIS 286
SGG + R+A+A L ++P ++ DEPT LD E + T K + +++I+
Sbjct: 146 SGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSG---RREVVNTIKELNKKYGITIILIT 202
Query: 287 HSQDFLNGVCTN-IIHLDKRKLKYYGGNYEAFCKTRL 322
H + V + II +D K+ G E F + +
Sbjct: 203 HYME--EAVEADRIIVMDSGKVVMEGTPKEIFKEVEM 237
Score = 30.1 bits (68), Expect = 3.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTL 129
L D LE+ G +LG NGSGKST+
Sbjct: 26 LDDVNLEVKKGEFLVILGRNGSGKSTI 52
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 40.9 bits (96), Expect = 0.001
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 38/183 (20%)
Query: 402 VQNVS--FRYSDDGPWIYR-------NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452
V+N+S FRY W R L F + LA++G NG+GKSTL ++ G +
Sbjct: 7 VRNLSKTFRYRTG--WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 453 PSVGMVRKNSH-LRFARYH--------------------QHLHELLDLDISPLDYMLQSF 491
P+ G + + H L F Y Q + ++LD PL L +
Sbjct: 65 PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDF---PL--RLNTD 119
Query: 492 PEVKDREE-MRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550
E + RE+ + + + + GL L+ GQK R+ A P +++ DE
Sbjct: 120 LEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALAS 179
Query: 551 LDM 553
LDM
Sbjct: 180 LDM 182
Score = 35.9 bits (83), Expect = 0.040
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Query: 118 LLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKL 177
++G NGSGKSTL +L + P ++ + D S + +R+R+
Sbjct: 44 IIGENGSGKSTLAKMLAG--MIEPTSGELLIDDHPLHFGDYSYRS-------QRIRM-IF 93
Query: 178 AEQLVACEDDESQEQLMDIYDRLD-DISADTAEARAANILHGLGFTKEMQQKKTKDFSGG 236
+ + + Q++D RL+ D+ + E + L +G + + G
Sbjct: 94 QDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPG 153
Query: 237 WRMRIALARALYVKPHLLLLDEPTNHLDL 265
+ R+ LARAL ++P +++ DE LD+
Sbjct: 154 QKQRLGLARALILRPKVIIADEALASLDM 182
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 40.2 bits (94), Expect = 0.001
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 33/183 (18%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHI--- 144
+ S + + L + L +N G L+G NG+GK+TLL L I
Sbjct: 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFD 65
Query: 145 --DI--FHLTREMPASDKSALTCVMEVDEERVRL---EKLAEQLVACEDDESQEQLMDIY 197
DI + + M + A+ V E R+ E LA E D+ QE++ +Y
Sbjct: 66 GKDITDWQTAKIM----REAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVY 121
Query: 198 DRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
+ + + +Q+ T SGG + +A+ RAL +P LLLLD
Sbjct: 122 ELFPRL-----------------HERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLD 162
Query: 258 EPT 260
EP+
Sbjct: 163 EPS 165
Score = 35.6 bits (82), Expect = 0.056
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 26/187 (13%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMV----RKNSHLRFARYHQHLHELLDLDISPLD 485
+ L+G NGAGK+TLL + GD + G + + + + A+ + + I P
Sbjct: 34 VTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE-----AVAIVPEG 88
Query: 486 YMLQSFPEVK----------DREEMRKIIGR-YGLTGRQQVCPIRQ---LSDGQKCRVVF 531
+ S V+ +R++ ++ I Y L R I++ +S G++ +
Sbjct: 89 RRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAI 148
Query: 532 AYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF-EGGLV--LVSHDFRLINQVAEEIW 588
P LLLLDEP+ L I + D I E G+ LV + ++A+ +
Sbjct: 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGY 208
Query: 589 ICENGKV 595
+ ENG V
Sbjct: 209 VLENGHV 215
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 41.3 bits (97), Expect = 0.001
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 50/199 (25%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVG-MVRKNSHLRFARYHQHLHELLDLDISPLDYML- 488
AL+G NGAGKSTLL ++G G ++ + + F + E L+ IS M+
Sbjct: 28 ALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDF----KSSKEALENGIS----MVH 79
Query: 489 QSFPEVKDREEMRKI-IGRYGLTG-------------------------RQQVCPIRQLS 522
Q V R M + +GRY G R +V LS
Sbjct: 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA---TLS 136
Query: 523 DGQKCRV----VFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEG---GLVLVSH 575
Q + F+Y A ++++DEPT+ L + ++ L I + G+V +SH
Sbjct: 137 VSQMQMIEIAKAFSYNA----KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISH 192
Query: 576 DFRLINQVAEEIWICENGK 594
I Q+ +EI I +G+
Sbjct: 193 KMEEIFQLCDEITILRDGQ 211
Score = 36.6 bits (85), Expect = 0.041
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 226 QQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA---CVWLEEELKTYKRIL 282
+ + SGG + ++ + R L +P +L+LDEPT +D+ A L EL + +
Sbjct: 385 HRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGI 444
Query: 283 VIISHSQDFLNGVCTNII 300
+IIS L G+ I+
Sbjct: 445 IIISSEMPELLGITDRIL 462
Score = 32.4 bits (74), Expect = 0.74
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 90 IANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
++N S +F G + L + L++ + L+G NG+GKSTLL L
Sbjct: 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCL 44
Score = 32.4 bits (74), Expect = 0.81
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 517 PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF---EGGLVLV 573
I LS G + +V+ P +L+LDEPT +D+ + I + + G++++
Sbjct: 388 QIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIII 447
Query: 574 SHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVLK 615
S + + + + I + NG V I+D K T + ++L+
Sbjct: 448 SSEMPELLGITDRILVMSNGLVA----GIVDTKTTTQNEILR 485
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 40.6 bits (95), Expect = 0.002
Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--ILVIISH 287
SGG + R+ +AR + ++P ++L+DEP + LD + + +EE + K+ +VI++H
Sbjct: 156 SGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTH 211
Score = 32.8 bits (75), Expect = 0.40
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI--YGDLTPS 454
+I +QNV+ Y +N+ I AL+GP+G GKST+L + DL
Sbjct: 12 IIISLQNVTISYGTFEA--VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEG 68
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 40.6 bits (95), Expect = 0.002
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLE---EEL-KTYKRILVIISHS 288
SGG + R+ +AR L V P ++L+DEP + LD A +E EEL + Y +V+++H+
Sbjct: 202 SGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYT--VVVVTHN 258
Score = 31.3 bits (71), Expect = 1.4
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVLVSHDFR 578
LS GQ+ R+ A P ++L+DEP + LD + D I + E +V+V+H+ +
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQ 260
Query: 579 LINQVAEEIWICENGKVTKWEGNILDYKET 608
+++++ + G G +++Y +T
Sbjct: 261 QAARISDQTAVFLTG------GELVEYDDT 284
Score = 30.2 bits (68), Expect = 3.1
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 374 GLTDKVTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLD----TR 429
G +D+ T D+ + F + V+++ Y DD L+ G+ +D +
Sbjct: 25 GESDEQTRDEWTDYEFDG-----DAKLSVEDLDVYYGDD-----HALK-GVSMDIPEKSV 73
Query: 430 LALVGPNGAGKSTLL 444
AL+GP+G GKST L
Sbjct: 74 TALIGPSGCGKSTFL 88
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 40.1 bits (94), Expect = 0.002
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 36/204 (17%)
Query: 423 GIDLDTR----LALVGPNGAGKS-TLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELL 477
G+ L + LALVG +G+GKS T + + P+ G+ + + L
Sbjct: 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAAL--GILPA-GVRQTAGRVLLDGKPVAPCALR 77
Query: 478 DLDIS-----------PLDYM-------LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
I+ PL M + + D + + GL +V +
Sbjct: 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLY 137
Query: 520 --QLSDG--QKCRVVFAYLAWQAPHLLLLDEPTNHLD----METIDALADAINDFEGGLV 571
++S G Q+ + A L +AP ++ DEPT LD +D L + G++
Sbjct: 138 PFEMSGGMLQRMMIALALLC-EAP-FIIADEPTTDLDVVAQARILDLLESIVQKRALGML 195
Query: 572 LVSHDFRLINQVAEEIWICENGKV 595
LV+HD ++ ++A+++ + +G++
Sbjct: 196 LVTHDMGVVARLADDVAVMSHGRI 219
Score = 30.8 bits (70), Expect = 1.7
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKS-TLLAVLG 134
+++ N ++ L+ L L GR L+G +GSGKS T A LG
Sbjct: 5 IELRNIALQAAQ-PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALG 51
Score = 30.8 bits (70), Expect = 2.0
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 207 TAEARAANILH--GLGFTKEMQQKKTKDFSGGW--RMRIALARALYVKPHLLLLDEPTNH 262
+A L GL + + + SGG RM IALA L + ++ DEPT
Sbjct: 113 ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALA--LLCEAPFIIADEPTTD 170
Query: 263 LDL 265
LD+
Sbjct: 171 LDV 173
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 39.3 bits (93), Expect = 0.002
Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 51/193 (26%)
Query: 397 PPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLT 452
PV+ V+ +S + + + + R + + G G G++ L ++G
Sbjct: 2 EPVLEVRGLSVKGAVRD----------VSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP 51
Query: 453 PSVGMVRKNSH-LRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTG 511
P+ G + + + + + I+ + PE DR R GL
Sbjct: 52 PASGEITLDGKPVTRRSPR----DAIRAGIAYV-------PE--DR-------KREGLVL 91
Query: 512 RQQVCPIR-------QLSDG--QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADA 562
+ LS G QK VV A + P +L+LDEPT +D+ +
Sbjct: 92 DL---SVAENIALSSLLSGGNQQK--VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL 146
Query: 563 INDF--EGGLVLV 573
I + G VL+
Sbjct: 147 IRELADAGKAVLL 159
Score = 35.5 bits (83), Expect = 0.033
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
SGG + ++ LAR L P +L+LDEPT +D+ A
Sbjct: 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGA 139
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 39.8 bits (94), Expect = 0.002
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 17/62 (27%)
Query: 215 ILHGLGFTKEMQQKKTKDF-----------------SGGWRMRIALARALYVKPHLLLLD 257
+L G +K+ +++K ++ SGG R R+ +ARAL P LLLD
Sbjct: 99 VLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD 158
Query: 258 EP 259
EP
Sbjct: 159 EP 160
Score = 38.7 bits (91), Expect = 0.005
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 24/136 (17%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISP------- 483
L+GPNGAGK+T +I G + P G + + + H L + P
Sbjct: 30 GLLGPNGAGKTTTFYMIVGLVKPDSGKILLD-GQDITKLPMHKRARLGIGYLPQEASIFR 88
Query: 484 -------LDYMLQSFPEVKDREEMRKII----GRYGLTG-RQQVCPIRQLSDGQKCRVVF 531
+ +L+ ++E + + + +T R+ LS G++ RV
Sbjct: 89 KLTVEENILAVLEIRG--LSKKEREEKLEELLEEFHITHLRKSKA--SSLSGGERRRVEI 144
Query: 532 AYLAWQAPHLLLLDEP 547
A P LLLDEP
Sbjct: 145 ARALATNPKFLLLDEP 160
Score = 29.4 bits (67), Expect = 5.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 108 LELNCGRRYGLLGLNGSGKSTL 129
L + G GLLG NG+GK+T
Sbjct: 21 LSVKQGEIVGLLGPNGAGKTTT 42
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 38.7 bits (91), Expect = 0.002
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH 463
L G +G GKSTLLN + +L G + +
Sbjct: 39 VLAGQSGVGKSTLLNALLPELDLRTGEISEKLG 71
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 40.2 bits (95), Expect = 0.002
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 210 ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
A AA IL L + +K ++ SGG R R+A+ RA+ +P + L DEP ++LD
Sbjct: 116 AEAARIL-ELE---PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
Score = 36.4 bits (85), Expect = 0.044
Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYG 449
GIDLD + LVGP+G GKSTLL ++ G
Sbjct: 22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVAG 52
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 40.7 bits (95), Expect = 0.003
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVI 284
+ SGG + R+++ARA+Y + + D+P + LD D+C+ ++ELK R+LV
Sbjct: 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCM--KDELKGKTRVLV- 796
Query: 285 ISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRL--ELLENQMK-----QYNWEQD 337
++ FL + II + + +K G E L +L+EN K + N +
Sbjct: 797 -TNQLHFLPLM-DRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDE 854
Query: 338 QIAHM 342
I +
Sbjct: 855 NILKL 859
Score = 40.0 bits (93), Expect = 0.004
Identities = 58/265 (21%), Positives = 106/265 (40%), Gaps = 49/265 (18%)
Query: 396 PP-----PVIMVQNVSFRYSD--DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY 448
PP P I ++N F + P + ++ I + + +A+VG G GK++L++ +
Sbjct: 606 PPLQPGAPAISIKNGYFSWDSKTSKPTL-SDINLEIPVGSLVAIVGGTGEGKTSLISAML 664
Query: 449 GDLTP----------SVGMVRK-----NSHLR----FARYHQHLHELLDLDISPLDYMLQ 489
G+L+ SV V + N+ +R F + +D++ L + L
Sbjct: 665 GELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLD 724
Query: 490 SFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTN 549
P +D E IG G+ +S GQK RV A + + + D+P +
Sbjct: 725 LLPG-RDLTE----IGERGV----------NISGGQKQRVSMARAVYSNSDIYIFDDPLS 769
Query: 550 HLDMETIDALADAI--NDFEGGL-VLVSHDFRLINQVAEEIWICENGKVTKWEGNI--LD 604
LD + D+ ++ +G VLV++ + + I + E + K EG L
Sbjct: 770 ALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEG--MIKEEGTFAELS 827
Query: 605 YKETLRAKVLKEKNKSAAVSNGKKK 629
+L K+++ K A
Sbjct: 828 KSGSLFKKLMENAGKMDATQEVNTN 852
Score = 38.8 bits (90), Expect = 0.010
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 390 PSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY 448
P G I ++V RY P + L F + ++ +VG GAGKS++LN ++
Sbjct: 1225 PVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF 1283
Score = 35.0 bits (80), Expect = 0.14
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
Query: 231 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL--DACVW--LEEELKTYKRILVIIS 286
++FS G R ++LARAL + +L+LDE T +D+ D+ + + EE K+ +++I+
Sbjct: 1370 ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCT--MLVIA 1427
Query: 287 H 287
H
Sbjct: 1428 H 1428
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 40.5 bits (95), Expect = 0.003
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 396 PPP------VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY 448
PPP I ++V RY + P + L F I ++ +VG GAGKS++LN ++
Sbjct: 1228 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALF 1286
Score = 40.5 bits (95), Expect = 0.003
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 36/153 (23%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVIIS 286
SGG + R+++ARA+Y + + D+P + LD D C +++EL+ R+LV
Sbjct: 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKC--IKDELRGKTRVLV--- 796
Query: 287 HSQDFLNGVCTNIIH----LDKRKLKYYG-----GNYEAFCKTRL---ELLEN--QMKQY 332
TN +H +D+ L + G G YE +L+EN +M++Y
Sbjct: 797 ----------TNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEY 846
Query: 333 NWEQDQIAHMKNYIARFGHGSAKLARQAQSKEK 365
E + + +G+A ++ S +K
Sbjct: 847 VEENGEEEDDQTSSKPVANGNANNLKKDSSSKK 879
Score = 36.6 bits (85), Expect = 0.044
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 19/103 (18%)
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL--DACVW--LEEELKTYKRILVIISH 287
+FS G R ++LARAL + +L+LDE T +D+ DA + + EE K+ ++II+H
Sbjct: 1374 NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT--MLIIAH 1431
Query: 288 SQDFLNGV--CTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQ 328
LN + C I+ LD ++ + T LL N+
Sbjct: 1432 R---LNTIIDCDRILVLDAGRVVEFD--------TPENLLSNE 1463
Score = 33.9 bits (78), Expect = 0.30
Identities = 42/182 (23%), Positives = 70/182 (38%), Gaps = 49/182 (26%)
Query: 398 PVIMVQNVSFRYSDDG--PWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
P I ++N F + P + N+ + + + +A+VG G GK++L++ + G+L P
Sbjct: 613 PAISIKNGYFSWDSKAERPTL-SNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRS 671
Query: 456 G---------------------MVRKN----SHLRFARYHQHLHELLDLDISPLDYMLQS 490
VR N S RY + +D++ L + L
Sbjct: 672 DASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERA------IDVTALQHDLDL 725
Query: 491 FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNH 550
P D E IG G+ +S GQK RV A + + + D+P +
Sbjct: 726 LPG-GDLTE----IGERGV----------NISGGQKQRVSMARAVYSNSDVYIFDDPLSA 770
Query: 551 LD 552
LD
Sbjct: 771 LD 772
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 38.9 bits (92), Expect = 0.004
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460
LVG +G GKSTLLN + +L + G + +
Sbjct: 89 VLVGQSGVGKSTLLNALLPELVLATGEISE 118
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 39.7 bits (93), Expect = 0.004
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISH 287
SGG + RIA+AR Y KP +LDE T+ + +D ++ + + L +SH
Sbjct: 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSH 637
Score = 39.7 bits (93), Expect = 0.005
Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 19/171 (11%)
Query: 420 LEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR-KNSHLRF----ARYHQHLH 474
L F + L + GPNG GKS+L ++ G+L P G K + + R + L
Sbjct: 471 LSFEVPSGNNLLICGPNGCGKSSLFRIL-GELWPVYGGRLTKPAKGKLFYVPQRPYMTLG 529
Query: 475 ELLDLDI---SPLDYMLQSFPEVKDREEM------RKIIGRYGLTGRQQVCPIRQ-LSDG 524
L D I S D + + KD E++ I+ R G G V LS G
Sbjct: 530 TLRDQIIYPDSSEDMKRRGLSD-KDLEQILDNVQLTHILEREG--GWSAVQDWMDVLSGG 586
Query: 525 QKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSH 575
+K R+ A L + P +LDE T+ + ++ + +F L VSH
Sbjct: 587 EKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSH 637
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 38.9 bits (90), Expect = 0.004
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 19/198 (9%)
Query: 399 VIMVQNVSFRYSDDGPWIYRN-LEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
++ V+N+ F+Y + N + F I ++++G NG+GKST LI G G
Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK 63
Query: 458 VRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKD-----------REEMRKIIGR 506
V+ + L A +L + + D D REEM K +
Sbjct: 64 VKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDE 123
Query: 507 YGLTGRQQVCPIRQ---LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLD----METIDAL 559
L R+ LS GQK RV A + P +++LDE T+ LD E + +
Sbjct: 124 ALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI 183
Query: 560 ADAINDFEGGLVLVSHDF 577
+ ++ ++ ++HD
Sbjct: 184 HEIKEKYQLTVLSITHDL 201
Score = 33.1 bits (75), Expect = 0.32
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 224 EMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
+ + ++ SGG + R+A+A + ++P +++LDE T+ LD
Sbjct: 132 DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLD 172
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 38.7 bits (90), Expect = 0.007
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET---IDALADAINDFEG-GLVLVSH 575
+L++G+ +V+ A P LL+ DEPTN ++ T I L +N ++L+SH
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217
Query: 576 DFRLINQVAEEI 587
D ++I+Q A++I
Sbjct: 218 DLQMISQWADKI 229
Score = 33.7 bits (77), Expect = 0.25
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 211 RAANILHGLGFT--KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
RA +LH +G K++ + + + G ++ +A AL +P LL+ DEPTN ++
Sbjct: 135 RAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSME 190
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 37.7 bits (88), Expect = 0.007
Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 42/175 (24%)
Query: 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQ-----H 472
+NL+ I L+ + + G +G+GKSTL+N + + G R S L ++
Sbjct: 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVN----EGLYASGKARLISFLPKFSRNKLIFIDQ 67
Query: 473 LHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA 532
L L+D+ L Y+ +G+ + LS G+ RV A
Sbjct: 68 LQFLIDVG---LGYL---------------TLGQ----------KLSTLSGGELQRVKLA 99
Query: 533 YLAWQAPH--LLLLDEPTNHLDMETIDALADAIN---DFEGGLVLVSHDFRLINQ 582
+ P L +LDEP+ L + I+ L + I D ++L+ H+ +++
Sbjct: 100 SELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS 154
Score = 35.4 bits (82), Expect = 0.035
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 218 GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH--LLLLDEPTNHLDLDACVWLEEEL 275
GLG+ Q K SGG R+ LA L+ +P L +LDEP+ L L E +
Sbjct: 75 GLGYLTLGQ--KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVI 132
Query: 276 KTY---KRILVIISHSQDFL 292
K +++I H+ D L
Sbjct: 133 KGLIDLGNTVILIEHNLDVL 152
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 37.5 bits (87), Expect = 0.009
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 434 GPNGAGKSTLLNLIYGDLTPSVGMVR-KNSHLR-----FARYHQHLHELLDLDISPLDYM 487
G NG GKS+LL +I G + PS G + KN ++ + Y H + L L+++ +
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH-NLGLKLEMTVFEN- 90
Query: 488 LQSFPEVKDR-EEMRKIIGRYGLTG-RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLD 545
L+ + E+ + E + I + L + C LS G + V A L L LLD
Sbjct: 91 LKFWSEIYNSAETLYAAIHYFKLHDLLDEKC--YSLSSGMQKIVAIARLIACQSDLWLLD 148
Query: 546 EPTNHLDMETIDALAD--AINDFEGGLVLVS 574
E +L E D L + + GG+VL+S
Sbjct: 149 EVETNLSKENRDLLNNLIVMKANSGGIVLLS 179
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 38.6 bits (90), Expect = 0.010
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 517 PIRQLSDGQKCRVVFA-------YLAWQAP-HLLLLDEPTNHLDMETIDALADAINDFEG 568
PI+ LS G++ A L +A LL LDEP LD E ++ LA+ + +
Sbjct: 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLS 871
Query: 569 G---LVLVSHD 576
++++SH
Sbjct: 872 DGRQIIIISHV 882
Score = 35.1 bits (81), Expect = 0.12
Identities = 33/139 (23%), Positives = 47/139 (33%), Gaps = 24/139 (17%)
Query: 170 ERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKK 229
L L Q+ E+ E L + D+ T L +
Sbjct: 758 RADILRNLLAQIE----AEANEILSKLSLNRYDLRRLTIRKDGNGGL-----VVVVYDGG 808
Query: 230 TKD----FSGGWRMRIALARAL--------YVKPHLLLLDEPTNHLD---LDACVWLEEE 274
SGG R +LA L + LL LDEP LD L+ + EE
Sbjct: 809 EVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEE 868
Query: 275 LKTYKRILVIISHSQDFLN 293
L + R ++IISH ++
Sbjct: 869 LLSDGRQIIIISHVEELKE 887
Score = 31.3 bits (71), Expect = 1.8
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 417 YRNLEFGIDLDTRLAL-VGPNGAGKSTLLNLI----YGDLTPS 454
+++++ D+ + L VGPNGAGKS++L+ I YG
Sbjct: 14 FKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRL 56
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 38.0 bits (89), Expect = 0.010
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462
L+G +G GKSTL+N + +L G + +
Sbjct: 168 VLLGQSGVGKSTLINALLPELNQKTGEISEKL 199
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 36.4 bits (84), Expect = 0.017
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 521 LSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVSHD 576
LS G+ RV A + L DEP+ +LD+E A AI + ++V HD
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131
Query: 577 FRLINQVAEEIWICE 591
+++ +++ I + E
Sbjct: 132 LAVLDYLSDRIHVFE 146
Score = 32.9 bits (75), Expect = 0.24
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 232 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDF 291
D SGG R+A+A AL L DEP+ +LD +E+ L + I + +
Sbjct: 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLD------IEQRLNAARAIRRLSEEGKKT 124
Query: 292 LNGVCTNIIHLD---KRKLKYYG--GNYEAFCK 319
V ++ LD R + G G Y +
Sbjct: 125 ALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQ 157
Score = 30.6 bits (69), Expect = 1.4
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPS 454
+ +VGPNG GK+T + ++ G L P+
Sbjct: 28 IGIVGPNGTGKTTAVKILAGQLIPN 52
Score = 28.3 bits (63), Expect = 9.9
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 117 GLLGLNGSGKSTLLAVLGNREVPVPDHID 145
G++G NG+GK+T + +L + +P D+ +
Sbjct: 29 GIVGPNGTGKTTAVKILAGQLIPNGDNDE 57
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 37.7 bits (88), Expect = 0.018
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
SGG + ++A+AR L +P +L+LDEPT +D+ A
Sbjct: 397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA 430
Score = 35.7 bits (83), Expect = 0.066
Identities = 49/189 (25%), Positives = 92/189 (48%), Gaps = 27/189 (14%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR---KNSHLRFAR---------YHQHLHELL 477
+ALVG NGAGKST++ ++ G T G + K + HQ L+ +
Sbjct: 33 MALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIP 92
Query: 478 DLDISPLDYMLQSFPEV-------KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVV 530
L I+ ++ + F K E K++ R L + +LS G++ V
Sbjct: 93 QLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDK-LVGELSIGEQQMVE 151
Query: 531 FA-YLAWQAPHLLLLDEPTNHL-DMETIDALADAINDF--EG-GLVLVSHDFRLINQVAE 585
A L++++ ++++DEPT+ L D ET ++L I + +G G+V +SH + I ++ +
Sbjct: 152 IAKVLSFES-KVIIMDEPTDALTDTET-ESLFRVIRELKSQGRGIVYISHRLKEIFEICD 209
Query: 586 EIWICENGK 594
++ + +G+
Sbjct: 210 DVTVFRDGQ 218
Score = 33.4 bits (77), Expect = 0.37
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 96 TFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
F G + L L + GR L+G NG+GKST++ VL
Sbjct: 13 AFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVL 50
Score = 32.3 bits (74), Expect = 0.87
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 31/176 (17%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQ--------HLHE------ 475
L + G GAG++ L+ ++YG L + G V + H R Q ++ E
Sbjct: 281 LGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDG 340
Query: 476 -LLDLDI------SPLDYMLQSFPEVKDREEMRKI---IGRYGLT--GRQQVCPIRQLSD 523
+L + + + L Y ++ +K +E + + I + + +Q I LS
Sbjct: 341 LVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQ--AIGLLSG 398
Query: 524 GQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EG-GLVLVSHD 576
G + +V A P +L+LDEPT +D+ + IN F EG ++LVS +
Sbjct: 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 37.5 bits (87), Expect = 0.018
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 14/77 (18%)
Query: 519 RQLSDGQKCRVVFAYLAWQA-------PHLLLLDEPTNHLDMETIDALADAINDF--EGG 569
R+LSDG +LA P LLLLDEP L + + ALA+ +
Sbjct: 269 RELSDGT-----LRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQ 323
Query: 570 LVLVSHDFRLINQVAEE 586
+++ +H RL+N V E
Sbjct: 324 VIVSTHSPRLLNAVEEH 340
Score = 33.2 bits (76), Expect = 0.41
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 239 MR-IALARAL--YVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRI--LVIISHSQDFLN 293
+R +ALA L P LLLLDEP L D L E +++ + +++ +HS LN
Sbjct: 276 LRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSPRLLN 335
Query: 294 GV-CTNIIHLDK 304
V ++ LD+
Sbjct: 336 AVEEHSVFWLDR 347
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 37.1 bits (86), Expect = 0.023
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 520 QLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET---IDALADAINDFEG-GLVLVSH 575
+L++G+ +V+ A P LL+ DEPTN ++ T I L +N ++L+SH
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 576 DFRLINQVAEEI 587
D ++++Q A++I
Sbjct: 218 DLQMLSQWADKI 229
Score = 31.3 bits (71), Expect = 1.4
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 211 RAANILHGLGFT--KEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
RA +LH +G K+ + + + G ++ +A AL +P LL+ DEPTN ++
Sbjct: 135 RAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAME 190
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 36.5 bits (85), Expect = 0.026
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
+I N + + E+L+ L +N G + ++G NGSGKSTL V+
Sbjct: 9 EIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVI 53
Score = 35.8 bits (83), Expect = 0.050
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEE---LKTYKRILVIISHSQ 289
FSGG + R + + + L +LDE + LD+DA + E L T + +++I+H Q
Sbjct: 152 FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ 211
Query: 290 DFLNGVCTNIIH 301
L+ + + +H
Sbjct: 212 RLLDYIKPDYVH 223
Score = 35.4 bits (82), Expect = 0.061
Identities = 58/228 (25%), Positives = 88/228 (38%), Gaps = 63/228 (27%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYG-------------------DLTP--- 453
I + L I+ A++GPNG+GKSTL +I G DL P
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 454 -------------SVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEM 500
+ V LR A Y+ ++ PL F E+
Sbjct: 82 AHLGIFLAFQYPIEIPGVSNADFLRLA-YNSKRKFQGLPELDPL-----EFLEI------ 129
Query: 501 RKIIGRYGLTGRQQVCPIRQL----SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETI 556
I + L G R + S G+K R +A L +LDE + LD I
Sbjct: 130 --INEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLD---I 184
Query: 557 DAL---ADAINDF---EGGLVLVSHDFRLINQVAEE-IWICENGKVTK 597
DAL A+ IN E ++L++H RL++ + + + + +NGK+ K
Sbjct: 185 DALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK 232
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 37.3 bits (87), Expect = 0.028
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 24/159 (15%)
Query: 403 QNVSFRYSDDGPWIYRNLEFG-IDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGM 457
+NV+F Y D+G G I+L + L L+G NG+GKSTL L+ G P G
Sbjct: 326 RNVTFAYQDNG------FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 458 V----RKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQ 513
+ + + + Y + + D D +L + + + K + R + +
Sbjct: 380 ILLDGKPVTAEQPEDYRKLFSAVFT-DFHLFDQLLGPEGKPANPALVEKWLERLKMAHKL 438
Query: 514 QVCPIR----QLSDGQKCRVVFAYLAWQAPH--LLLLDE 546
++ R +LS GQK R+ A L A +LLLDE
Sbjct: 439 ELEDGRISNLKLSKGQKKRL--ALLLALAEERDILLLDE 475
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 33.3 bits (77), Expect = 0.029
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 417 YRNLEFGIDLDTRLALVGPNGAGKSTLL 444
+ ID L L GP+G+GKSTL+
Sbjct: 12 FDGHTIPIDPKGTL-LTGPSGSGKSTLI 38
Score = 28.7 bits (65), Expect = 1.3
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 10/34 (29%)
Query: 118 LLGLNGSGKSTLL----AVLGNREVPVPDHIDIF 147
L G +GSGKSTL+ +L VP F
Sbjct: 26 LTGPSGSGKSTLIDAIQTLL------VPAKRVAF 53
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 36.4 bits (85), Expect = 0.035
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
+AL+G +G GKSTL+N + G+ G VR
Sbjct: 198 VALLGSSGVGKSTLVNALLGEEVQKTGAVR 227
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 36.2 bits (84), Expect = 0.036
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 430 LALVGPNGAGKSTLLNLIYGDLTPSVGMVR----KNSHLRFARY----HQHLHELLDLDI 481
+ +VGP+G+GKSTLL L+ L G V K + AR L + +
Sbjct: 4 MLIVGPSGSGKSTLLKLLALRLLARGGRVIVIDPKGEYSGLARALGGEVIDLGPGSGISL 63
Query: 482 SPLD 485
+PLD
Sbjct: 64 NPLD 67
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 37.0 bits (86), Expect = 0.039
Identities = 47/162 (29%), Positives = 64/162 (39%), Gaps = 33/162 (20%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSV---GMVRKNSHLR---FAR---YHQ----HLHELL 477
AL+G +GAGK+TLLN++ +T V G N F R Y Q HL
Sbjct: 793 ALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTST 852
Query: 478 ---DLDISPLDYMLQSFPEVKDREEMR---KIIGRYGLTGRQQVC---PIRQLSDGQKCR 528
L S Y+ Q V E+M ++I + P L+ Q+ R
Sbjct: 853 VRESLRFSA--YLRQP-KSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKR 909
Query: 529 VVFAYLAWQAPHLLL-LDEPTNHLD-------METIDALADA 562
+ P LLL LDEPT+ LD + + LAD
Sbjct: 910 LTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH 951
Score = 30.8 bits (70), Expect = 3.0
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 238 RMRIALARALYVKPHLLL-LDEPTNHLD 264
R R+ + L KP LLL LDEPT+ LD
Sbjct: 907 RKRLTIGVELVAKPKLLLFLDEPTSGLD 934
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 36.0 bits (84), Expect = 0.045
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 432 LVGPNGAGKSTLLNLIYGDL 451
L G +G GKSTLLN + DL
Sbjct: 169 LAGQSGVGKSTLLNALAPDL 188
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 35.3 bits (82), Expect = 0.050
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 5 AKKKQQQKKKEQAKGRGAAAPKKPTTSATNDVKPEQITNGVKQEPEEISPEEA 57
A++ +QQ KK +A G AP++ + ++ K EP+ +
Sbjct: 112 AQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDI 164
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 32.9 bits (76), Expect = 0.052
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 16/62 (25%)
Query: 518 IRQLSDGQKCRVVFAYLA--------------WQAPHLLLLDEPTNHLDMETIDALADAI 563
LS G+K V AYLA AP L+ LDE LD E I +L + +
Sbjct: 20 SGTLSGGEK--QVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELL 77
Query: 564 ND 565
+
Sbjct: 78 RE 79
>gnl|CDD|206685 cd01898, Obg, Obg GTPase. The Obg nucleotide binding protein
subfamily has been implicated in stress response,
chromosome partitioning, replication initiation,
mycelium development, and sporulation. Obg proteins are
among a large group of GTP binding proteins conserved
from bacteria to humans. The E. coli homolog, ObgE is
believed to function in ribosomal biogenesis. Members of
the subfamily contain two equally and highly conserved
domains, a C-terminal GTP binding domain and an
N-terminal glycine-rich domain.
Length = 170
Score = 34.7 bits (81), Expect = 0.059
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 13/49 (26%)
Query: 430 LALVG-PNGAGKSTLLNLI------YGD-----LTPSVGMVRKNSHLRF 466
+ LVG PN AGKSTLL+ I D L P++G+VR + F
Sbjct: 3 VGLVGLPN-AGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSF 50
Score = 28.5 bits (65), Expect = 7.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 117 GLLGLNGSGKSTLLAVLGN 135
GL+GL +GKSTLL+ + N
Sbjct: 4 GLVGLPNAGKSTLLSAISN 22
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 35.2 bits (81), Expect = 0.063
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 417 YRNLEFGIDLDTRL-ALVGPNGAGKSTLLNLIY 448
+++LE ID L + GPNG+GK+T+L+ I
Sbjct: 10 FKDLE--IDFSKGLTLIYGPNGSGKTTILDAIR 40
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 34.9 bits (81), Expect = 0.071
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 40/172 (23%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSV---GMVRKNSH--LRFARYHQHLHELLDLDISPLDY 486
++G G+G STLL + +V G + N FA + +I Y
Sbjct: 38 VLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPG-------EII---Y 87
Query: 487 MLQS---FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLL 543
+ + FP + RE + + G + V R +S G++ RV A +L
Sbjct: 88 VSEEDVHFPTLTVRETLDFAL---RCKGNEFV---RGISGGERKRVSIAEALVSRASVLC 141
Query: 544 LDEPTNHLDMET-------IDALADAINDFEGGLVLVSHDFRLINQVAEEIW 588
D T LD T I +AD VS + Q ++EI+
Sbjct: 142 WDNSTRGLDSSTALEILKCIRTMADV----LKTTTFVS-----LYQASDEIY 184
Score = 31.8 bits (73), Expect = 0.73
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG R R+++A AL + +L D T LD
Sbjct: 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
Score = 30.3 bits (69), Expect = 2.4
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 96 TFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR 136
+L+D + G +LG GSG STLL L NR
Sbjct: 16 GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR 56
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 34.2 bits (79), Expect = 0.12
Identities = 43/195 (22%), Positives = 76/195 (38%), Gaps = 34/195 (17%)
Query: 420 LEF-GIDLDTRLALVGPNGAGKSTLLNLI----YGDLT--PSVGMVRKNSHLRFARYHQH 472
++F G+D + + GP GAGKST+L+ I YG +R FA
Sbjct: 20 IDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSV----FAPGEDT 75
Query: 473 LHELLDLDISPLDYMLQSFPEVKDREEMRKII----GRYG-LTGRQQVCPIRQLSDGQKC 527
+ Y ++ + D ++ +I+ G + R P+ LS G+
Sbjct: 76 AEVSFTFQLGGKKYRVERSRGL-DYDQFTRIVLLPQGEFDRFLAR----PVSTLSGGETF 130
Query: 528 RVVFAY---LAWQAPH-------LLLLDEPTNHLDMETIDALADAINDF--EGGLVLV-S 574
+ L+ + L +DE LD E ++A+A A+ E +V V S
Sbjct: 131 LASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVIS 190
Query: 575 HDFRLINQVAEEIWI 589
H L ++ + + +
Sbjct: 191 HVEELKERIPQRLEV 205
Score = 31.9 bits (73), Expect = 0.65
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 230 TKDFSGGWRMRIALARALY----------VKPHLLLLDEPTNHLD---LDACVWLEEELK 276
SGG +L+ AL + L +DE LD L+A E ++
Sbjct: 121 VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIR 180
Query: 277 TYKRILVIISHSQDF 291
T R++ +ISH ++
Sbjct: 181 TENRMVGVISHVEEL 195
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 34.9 bits (81), Expect = 0.13
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 96 TFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
TF G + L + L++ G L G NG+GKSTL+ VL
Sbjct: 14 TFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVL 51
Score = 34.5 bits (80), Expect = 0.15
Identities = 54/214 (25%), Positives = 88/214 (41%), Gaps = 58/214 (27%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLI-----YGDLTPSV---GMVRKNSHLR----- 465
+ L R ++L G NGAGKSTL+ ++ +G + G + S++R
Sbjct: 23 NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82
Query: 466 -FARYHQHL---HEL-------LDLDISPLDYMLQSFPEVKDREE--MRKI--------- 503
A HQ L EL L +I+P M + + R + + ++
Sbjct: 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIM--DYDAMYLRAQKLLAQLKLDINPATP 140
Query: 504 IGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAI 563
+G GL G+QQ+ I + L QA LL+LDEPT L L D I
Sbjct: 141 VGNLGL-GQQQLVEIAKA------------LNKQA-RLLILDEPTASLTESETAVLLDII 186
Query: 564 NDF-EGGL--VLVSHDFRLINQVAEEIWICENGK 594
D G+ + +SH + +++ I + +G+
Sbjct: 187 RDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
Score = 34.5 bits (80), Expect = 0.18
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA 267
SGG + + LA+ L + P +L+LDEPT +D+ A
Sbjct: 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGA 440
Score = 30.7 bits (70), Expect = 2.9
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 229 KTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL------ 282
+ G + + +A+AL + LL+LDEPT L E E I+
Sbjct: 140 PVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLT-------ESETAVLLDIIRDLKAH 192
Query: 283 ----VIISHSQDFLNGVCTNI 299
+ ISH + + + I
Sbjct: 193 GIACIYISHKLNEVKAISDTI 213
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The
Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show sequence
conservation in the region between the Walker A and B
motifs (G1 and G3 box motifs), to the exclusion of other
GTPases. TrmE is ubiquitous in bacteria and is a
widespread mitochondrial protein in eukaryotes, but is
absent from archaea. The yeast member of TrmE family,
MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein involved
in cell division control. Era is characterized by a
distinct derivative of the KH domain (the pseudo-KH
domain) which is located C-terminal to the GTPase
domain. EngA and its orthologs are composed of two
GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family.
Length = 161
Score = 33.8 bits (78), Expect = 0.13
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 431 ALVGPNGAGKSTLLNLIYGD 450
A+ G GKS+LLN + G
Sbjct: 1 AIFGRPNVGKSSLLNALLGQ 20
>gnl|CDD|152901 pfam12467, CMV_1a, Cucumber mosaic virus 1a protein. This domain
family is found in viruses, and is typically between 156
and 171 amino acids in length. The family is found in
association with pfam01443, pfam01660. 1a protein is the
major virulence factor of the cucumber mosaic virus
(CMV). The Ns strain of CMV causes necrotic lesions to
Nicotiana spp. while other strains cause systemic
mosaic. The determinant of the pathogenesis of these
different strains is the specific amino acid residue at
the 461 residue of the 1a protein.
Length = 175
Score = 33.7 bits (77), Expect = 0.15
Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 14/84 (16%)
Query: 3 SDAKKKQQQKKKEQAKGR------------GAAAPKKPTTSATNDVKPEQITNGVKQEPE 50
D K + +KKK+ + AP P+ S +DVKPE G Q PE
Sbjct: 73 EDGKTLRAEKKKKLEEALQQPVQEDSVSEEFEDAPDAPSESVRDDVKPENPVVGQTQAPE 132
Query: 51 --EISPEEALCRKLEADAKLNAEA 72
E+ R + A A
Sbjct: 133 PPELKSLSTQTRSPDTRLAERAGA 156
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 34.1 bits (78), Expect = 0.18
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 32/214 (14%)
Query: 87 DVKIANFSITFHGC--ELLQDTMLELNCGRRYGLLGLNGSGKSTL-LAVLGNREV----P 139
++KI + + + +L+ + G++ G+ G GSGKS+L LA ++
Sbjct: 19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI 78
Query: 140 VPDHIDIFHLTREMPASDKSALTCVME---VDEERVRLEKLAEQLVACEDDESQEQLMDI 196
V D IDI L + +S L+ +++ + +R E C DD E L
Sbjct: 79 VIDGIDISKLPLH---TLRSRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEAL--- 130
Query: 197 YDRLDDISADTAEARAANILHGL-GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLL 255
+I A+ N++ L G + + ++FS G R LARA K +L+
Sbjct: 131 -----EI------AQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILI 179
Query: 256 LDEPTNHLDLDACVWLEEELKT--YKRILVIISH 287
+DE T +D+ L++ + T R +V I+H
Sbjct: 180 MDEATASIDMATENILQKVVMTAFADRTVVTIAH 213
>gnl|CDD|234608 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 34.0 bits (79), Expect = 0.23
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 417 YRNLE-FGIDLDTRL-ALVGPNGAGKSTLLNLIY 448
+RN E ++L + LVG NG GK+ LL IY
Sbjct: 11 FRNYEELDLELSPGVNVLVGENGQGKTNLLEAIY 44
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 34.3 bits (79), Expect = 0.26
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 424 IDLDTRLALVGPNGAGKSTLLNLI---YGDLTPSVGMVRKNSH-LRFARY 469
+DLD + G NGAGK+TLL L+ YG+ PS +V K FA Y
Sbjct: 14 LDLDGHTNICGTNGAGKTTLLRLLPLFYGE-RPS-RIVSKTDQRKSFADY 61
>gnl|CDD|225982 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 33.9 bits (78), Expect = 0.27
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI 447
P+ + + D P+ + N G D+ ++GP GAGK+ LL+ +
Sbjct: 412 GEPLTV-----LKTEDGSPFYF-NFHVGEDVG-HTLIIGPTGAGKTVLLSFL 456
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 34.0 bits (78), Expect = 0.28
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFG-IDLDTR----LALVGPNGAGKSTLLNLIYGDLTPS 454
+ ++NV F Y D+ G I+L + + L+G NG+GKSTL L+ G P
Sbjct: 323 LELRNVRFAYQDN------AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ 376
Query: 455 VGMVRKN 461
G + +
Sbjct: 377 SGEILLD 383
>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only].
Length = 369
Score = 33.7 bits (78), Expect = 0.30
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 13/47 (27%)
Query: 432 LVG-PNGAGKSTLLNLI------YGD-----LTPSVGMVRKNSHLRF 466
LVG PN AGKSTLL+ + D L P++G+VR + F
Sbjct: 164 LVGLPN-AGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESF 209
>gnl|CDD|237040 PRK12289, PRK12289, GTPase RsgA; Reviewed.
Length = 352
Score = 33.5 bits (77), Expect = 0.32
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 20/83 (24%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARY---HQHLHELL----------- 477
+ GP+G GKS+L+N + D+ VG V + L R+ H L EL
Sbjct: 177 VAGPSGVGKSSLINRLIPDVELRVGKV--SGKLGRGRHTTRHVELFELPNGGLLADTPGF 234
Query: 478 ---DLDISPLDYMLQSFPEVKDR 497
DLD SP + + FPE + R
Sbjct: 235 NQPDLDCSPRE-LAHYFPEARQR 256
>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase. TrmE (MnmE,
ThdF, MSS1) is a 3-domain protein found in bacteria and
eukaryotes. It controls modification of the uridine at
the wobble position (U34) of tRNAs that read codons
ending with A or G in the mixed codon family boxes. TrmE
contains a GTPase domain that forms a canonical Ras-like
fold. It functions a molecular switch GTPase, and
apparently uses a conformational change associated with
GTP hydrolysis to promote the tRNA modification
reaction, in which the conserved cysteine in the
C-terminal domain is thought to function as a catalytic
residue. In bacteria that are able to survive in
extremely low pH conditions, TrmE regulates
glutamate-dependent acid resistance.
Length = 159
Score = 32.5 bits (75), Expect = 0.35
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 429 RLALVG-PNGAGKSTLLNLIYGD 450
++ + G PN GKS+LLN + G
Sbjct: 5 KVVIAGKPN-VGKSSLLNALAGR 26
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The full-length
GTPase protein is required for the complete activity of
the protein of interacting with the 50S ribosome and
binding of both adenine and guanine nucleotides, with a
preference for guanine nucleotide.
Length = 117
Score = 31.1 bits (71), Expect = 0.49
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Query: 429 RLALVG-PNGAGKSTLLNLI 447
R+ALVG PN GKSTL+N +
Sbjct: 1 RVALVGRPN-VGKSTLINAL 19
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 33.0 bits (75), Expect = 0.52
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 234 SGGWRM------RIALARALYVKPHLLLLDEPTNHLDLDACVWL----EEELKTYKRI-- 281
SGG + R+A+A+ L LL++DEPT LD D L E LK I
Sbjct: 803 SGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQ 862
Query: 282 LVIISHSQDFL 292
+++ISH ++ L
Sbjct: 863 VIMISHHRELL 873
Score = 31.0 bits (70), Expect = 2.3
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 518 IRQLSDGQKC------RVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAI 563
I LS G+K RV A LL++DEPT LD + L D I
Sbjct: 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDII 850
>gnl|CDD|224260 COG1341, COG1341, Predicted GTPase or GTP-binding protein [General
function prediction only].
Length = 398
Score = 32.8 bits (75), Expect = 0.57
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLI 447
+ + +VGP +GKSTL +
Sbjct: 65 SKSESAGKVGVVMVVGPVDSGKSTLTTYL 93
>gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA. This model describes
a univeral, mostly one-gene-per-genome GTP-binding
protein that associates with ribosomal subunits and
appears to play a role in ribosomal RNA maturation. This
GTPase, related to the nucleolar protein Obg, is
designated CgtA in bacteria. Mutations in this gene are
pleiotropic, but it appears that effects on cellular
functions such as chromosome partition may be secondary
to the effect on ribosome structure. Recent work done in
Vibrio cholerae shows an essential role in the stringent
response, in which RelA-dependent ability to synthesize
the alarmone ppGpp is required for deletion of this
GTPase to be lethal [Protein synthesis, Other].
Length = 329
Score = 32.4 bits (75), Expect = 0.66
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 13/47 (27%)
Query: 432 LVG-PNGAGKSTLLNLI------YGD-----LTPSVGMVRKNSHLRF 466
LVG PN AGKSTL++ + D L P++G+VR + F
Sbjct: 162 LVGLPN-AGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSF 207
>gnl|CDD|226459 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 32.6 bits (74), Expect = 0.68
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
+ NL+ +VGPNG+GK+T+L+ I L +
Sbjct: 14 FLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFI 52
>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed.
Length = 435
Score = 32.3 bits (75), Expect = 0.74
Identities = 9/18 (50%), Positives = 15/18 (83%), Gaps = 2/18 (11%)
Query: 429 RLALVG-PNGAGKSTLLN 445
++A++G PN GKS+L+N
Sbjct: 175 KIAIIGRPN-VGKSSLIN 191
>gnl|CDD|224998 COG2087, CobU, Adenosyl cobinamide kinase/adenosyl cobinamide
phosphate guanylyltransferase [Coenzyme metabolism].
Length = 175
Score = 31.5 bits (72), Expect = 0.74
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 25/86 (29%)
Query: 540 HLLLLDE--PTNHLDMET-IDALADAINDFEGGLVLVSHD--------------FR---- 578
+LL E + +E I+AL A++ G +VLVS++ FR
Sbjct: 90 NLLFAGEKDWSAEAAIEAEIEALLAALSRAPGTVVLVSNEVGLGIVPEYRLGRLFRDIAG 149
Query: 579 LINQ----VAEEIWICENGKVTKWEG 600
+NQ +A+E+++ G K +G
Sbjct: 150 RLNQQLAALADEVYLVVAGLPLKLKG 175
>gnl|CDD|237536 PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.
Length = 811
Score = 32.6 bits (75), Expect = 0.76
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 433 VGPNGAGKSTLLNLI 447
VGP GAGKS LL L+
Sbjct: 447 VGPTGAGKSVLLALM 461
>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases.
Arl10-like subfamily. Arl9/Arl10 was identified from a
human cancer-derived EST dataset. No functional
information about the subfamily is available at the
current time, but crystal structures of human Arl10b and
Arl10c have been solved.
Length = 159
Score = 31.1 bits (71), Expect = 0.80
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Query: 430 LALVGPNGAGKSTLLNLIYG-----DLTPSVG----MVRK 460
+ LVG +GK+TL+N+I D P+VG V K
Sbjct: 2 ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTK 41
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 32.3 bits (74), Expect = 0.86
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARY-----HQH 472
+N+ I L + G +G+GKSTL+N L P++ + RY +H
Sbjct: 625 KNITVSIPLGLFTCITGVSGSGKSTLINDT---LYPALANRLNGAKTVPGRYTSIEGLEH 681
Query: 473 LHELLDLDISP 483
L +++ +D SP
Sbjct: 682 LDKVIHIDQSP 692
Score = 30.8 bits (70), Expect = 2.5
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 194 MDIYDRLDDISADTAEARAANILH--GLGFTKEMQQKKTKDFSGGWRMRIALARALYVK- 250
M + + + A + +R L GLG+ + Q T SGG RI LA+ L +
Sbjct: 791 MTVEEAYEFFEAVPSISRKLQTLCDVGLGYIRLGQPATT--LSGGEAQRIKLAKELSKRS 848
Query: 251 --PHLLLLDEPTNHLDLD 266
L +LDEPT L D
Sbjct: 849 TGRTLYILDEPTTGLHFD 866
>gnl|CDD|185364 PRK15467, PRK15467, ethanolamine utilization protein EutP;
Provisional.
Length = 158
Score = 31.1 bits (70), Expect = 0.92
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 429 RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRF 466
R+A VG GAGK+TL N + G+ T + RK + F
Sbjct: 3 RIAFVGAVGAGKTTLFNALQGNYT----LARKTQAVEF 36
>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed.
Length = 424
Score = 32.0 bits (74), Expect = 0.95
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 13/48 (27%)
Query: 431 ALVG-PNGAGKSTLLNLI------YGD-----LTPSVGMVRKNSHLRF 466
LVG PN GKSTLL+++ + L P++G+V + F
Sbjct: 162 GLVGFPN-VGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSF 208
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 32.3 bits (74), Expect = 1.0
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 416 IYRNLEFGIDLDTRLALV-GPNGAGKSTLLNLIY 448
Y + +D ++ L+ G NG+GK+TL L
Sbjct: 4 SYDDWGNELDDLKKVNLIYGRNGSGKTTLSRLFR 37
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain only
a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 30.7 bits (70), Expect = 1.0
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 22/98 (22%)
Query: 430 LALVGPNGAGKST------------------LLNLIYGDLTPSVGMVRKNSHLRFARYHQ 471
+ +VG G+GKST L + GD P + + S + R +
Sbjct: 2 ILMVGLPGSGKSTFARRLLRELGAVVLSSDTLRKRLRGDGPPDISYYARASGRVYQRLLE 61
Query: 472 HLHELLDLDISP-LDYMLQSFPEVKDREEMRKIIGRYG 508
E L +D + ++R + + RYG
Sbjct: 62 LAREALRAGRPVIVD---ATNLSREERARLIDLARRYG 96
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity. The
Ras superfamily is divided into at least four families
in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families.
This superfamily also includes proteins like the GTP
translation factors, Era-like GTPases, and G-alpha chain
of the heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family
regulates initiation, elongation, termination, and
release in translation, and the Era-like GTPase family
regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 30.9 bits (70), Expect = 1.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVG 456
+VG G GKS+LLN + G V
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVS 26
>gnl|CDD|206726 cd04163, Era, E. coli Ras-like protein (Era) is a multifunctional
GTPase. Era (E. coli Ras-like protein) is a
multifunctional GTPase found in all bacteria except some
eubacteria. It binds to the 16S ribosomal RNA (rRNA) of
the 30S subunit and appears to play a role in the
assembly of the 30S subunit, possibly by chaperoning the
16S rRNA. It also contacts several assembly elements of
the 30S subunit. Era couples cell growth with
cytokinesis and plays a role in cell division and energy
metabolism. Homologs have also been found in eukaryotes.
Era contains two domains: the N-terminal GTPase domain
and a C-terminal domain KH domain that is critical for
RNA binding. Both domains are important for Era
function. Era is functionally able to compensate for
deletion of RbfA, a cold-shock adaptation protein that
is required for efficient processing of the 16S rRNA.
Length = 168
Score = 30.9 bits (71), Expect = 1.1
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 431 ALVG-PNGAGKSTLLNLIYG 449
A++G PN GKSTLLN + G
Sbjct: 7 AIIGRPN-VGKSTLLNALVG 25
>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA.
This EngA2 subfamily CD represents the second GTPase
domain of EngA and its orthologs, which are composed of
two adjacent GTPase domains. Since the sequences of the
two domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family. Although the exact function of
these proteins has not been elucidated, studies have
revealed that the E. coli EngA homolog, Der, and
Neisseria gonorrhoeae EngA are essential for cell
viability. A recent report suggests that E. coli Der
functions in ribosome assembly and stability.
Length = 174
Score = 30.9 bits (71), Expect = 1.1
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Query: 429 RLALVG-PNGAGKSTLLNLIYG 449
++A++G PN GKS+LLN + G
Sbjct: 4 KIAIIGRPN-VGKSSLLNALLG 24
>gnl|CDD|213242 cd03275, ABC_SMC1_euk, ATP-binding cassette domain of eukaryotic
SMC1 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 247
Score = 31.4 bits (72), Expect = 1.1
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLR 465
++GPNG+GKS L++ I S + K+SHLR
Sbjct: 26 CIIGPNGSGKSNLMDAI------SFVLGEKSSHLR 54
>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed.
Length = 449
Score = 32.0 bits (74), Expect = 1.1
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 429 RLALVG-PNGAGKSTLLN 445
++ + G PN GKS+LLN
Sbjct: 217 KVVIAGRPN-VGKSSLLN 233
>gnl|CDD|237393 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase;
Provisional.
Length = 512
Score = 31.8 bits (73), Expect = 1.2
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 13/40 (32%)
Query: 424 ID---LDTRLALV---GPNGAGKSTL-------LNLIYGD 450
ID L R ++ GP GAGKST+ L L+Y D
Sbjct: 275 IDNVFLMKRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLD 314
>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction
only].
Length = 444
Score = 31.8 bits (73), Expect = 1.2
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 429 RLALVG-PNGAGKSTLLNLIYGD 450
++A++G PN GKS+L+N I G+
Sbjct: 180 KIAIIGRPN-VGKSSLINAILGE 201
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 418
Score = 31.5 bits (72), Expect = 1.3
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
DT L L G+R G+ +G GKSTLL++L
Sbjct: 132 DTFLPLCRGQRLGIFAGSGVGKSTLLSML 160
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General
function prediction only].
Length = 219
Score = 31.1 bits (70), Expect = 1.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 429 RLALVGPNGAGKSTLLNLIYGDLTP 453
++ ++G G GK+TLLN + GD P
Sbjct: 7 KIVVLGDGGVGKTTLLNRLVGDEFP 31
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the F0F1-ATPase,
in that they both are proton driven rotary molecular
devices. However, the main function of the bacterial
flagellar motor is to rotate the flagellar filament for
cell motility. Intracellular pathogens such as
Salmonella and Chlamydia also have proteins which are
similar to the flagellar-specific ATPase, but function
in the secretion of virulence-related proteins via the
type III secretory pathway.
Length = 326
Score = 31.5 bits (72), Expect = 1.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLGN 135
D +L + G+R G+ +G GKSTLL ++
Sbjct: 61 DGLLTVGKGQRLGIFAGSGVGKSTLLGMIAR 91
>gnl|CDD|219076 pfam06535, RGM_N, Repulsive guidance molecule (RGM) N-terminus.
This family consists of the N-terminal region of several
mammalian and one bird sequence from Gallus gallus
(Chicken). All of the mammalian proteins are
hypothetical and have no known function but RGMA from
the chicken is annotated as being a repulsive guidance
molecule (RGM). RGM is a GPI-linked axon guidance
molecule of the retinotectal system. RGM is repulsive
for a subset of axons, those from the temporal half of
the retina. Temporal retinal axons invade the anterior
optic tectum in a superficial layer, and encounter RGM
expressed in a gradient with increasing concentration
along the anterior-posterior axis. Temporal axons are
able to receive posterior-dependent information by
sensing gradients or concentrations of guidance cues.
Thus, RGM is likely to provide positional information
for temporal axons invading the optic tectum in the
stratum opticum.
Length = 207
Score = 30.9 bits (70), Expect = 1.3
Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 16/76 (21%)
Query: 40 QITNGVKQEPEEISPEEALCRKLEADAKLNAE-ARACTGSLAVHPKSRDVKIANFSITFH 98
T+ V + PE C+ L + A AR C G LA H H
Sbjct: 41 AATSSVHGGGSKDGPETEFCKALRSYALCTRRTARTCRGDLAYHS------------AVH 88
Query: 99 GCELLQDTMLELNCGR 114
G E D M + NC +
Sbjct: 89 GIE---DLMSQHNCSK 101
>gnl|CDD|202979 pfam04346, EutH, Ethanolamine utilisation protein, EutH. EutH is a
bacterial membrane protein whose molecular function is
unknown. It has been suggested that it may act as an
ethanolamine transporter, responsible for carrying
ethanolamine from the periplasm to the cytoplasm.
Length = 354
Score = 31.4 bits (72), Expect = 1.3
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 117 GLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK 158
LLG+N G + L+A L N +I +F L ++M K
Sbjct: 269 KLLGMNEVGAAGLVATLAN-------NIPMFGLMKDMDPRGK 303
>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA
(YfgK, Der) is a ribosome-associated essential GTPase
with a duplication of its GTP-binding domain. It is
broadly to universally distributed among bacteria. It
appears to function in ribosome biogenesis or stability
[Protein synthesis, Other].
Length = 429
Score = 31.6 bits (73), Expect = 1.3
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Query: 429 RLALVG-PNGAGKSTLLNLIYG 449
++A++G PN GKSTL+N + G
Sbjct: 174 KIAIIGRPN-VGKSTLVNALLG 194
>gnl|CDD|218132 pfam04532, DUF587, Protein of unknown function (DUF587). This
family consists of the N termini of some human
herpesvirus U58 proteins, and some cytomegalovirus UL87
proteins. This region is always found N terminal to the
Pfam family UL87 (pfam03043), which has no known
function.
Length = 215
Score = 30.8 bits (70), Expect = 1.4
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 136 REVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVR 173
+ VPV H++ ++LT+E+ + + L + VD ER+R
Sbjct: 21 KSVPV--HVNSYNLTQEISRGEDARLCRPVPVDPERIR 56
>gnl|CDD|215874 pfam00350, Dynamin_N, Dynamin family.
Length = 168
Score = 30.7 bits (70), Expect = 1.4
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 430 LALVGPNGAGKSTLLNLIYG-DLTP-SVGMV 458
+A+VG AGKS++LN + G D+ P G
Sbjct: 1 IAVVGDQSAGKSSVLNALLGRDILPRGPGPT 31
>gnl|CDD|237906 PRK15086, PRK15086, ethanolamine utilization protein EutH;
Provisional.
Length = 372
Score = 31.4 bits (72), Expect = 1.5
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 117 GLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDK 158
LLG+N + ++A L N +I +F + ++M K
Sbjct: 271 KLLGMNEVAAAGMVATLAN-------NIPMFGMMKDMDPRGK 305
>gnl|CDD|241012 cd12568, RRM3_MRD1, RNA recognition motif 3 in yeast multiple
RNA-binding domain-containing protein 1 (MRD1) and
similar proteins. This subgroup corresponds to the RRM3
of MRD1 which is encoded by a novel yeast gene MRD1
(multiple RNA-binding domain). It is well-conserved in
yeast and its homologs exist in all eukaryotes. MRD1 is
present in the nucleolus and the nucleoplasm. It
interacts with the 35 S precursor rRNA (pre-rRNA) and U3
small nucleolar RNAs (snoRNAs). MRD1 is essential for
the initial processing at the A0-A2 cleavage sites in
the 35 S pre-rRNA. It contains 5 conserved RNA
recognition motifs (RRMs), also termed RBDs (RNA binding
domains) or RNPs (ribonucleoprotein domains), which may
play an important structural role in organizing specific
rRNA processing events. .
Length = 72
Score = 28.9 bits (65), Expect = 1.6
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 487 MLQSFPEVKDREEMRKIIGRYGLTGRQQVCP-----IRQLSDGQKCRVVFAYLAWQ 537
++++FP EE+R + +G R + P I + ++ Q+ R+ F LA++
Sbjct: 4 LVKNFPYGTTAEELRDLFEPHGKLTRVLMPPAGTIAIVEFANPQQARLAFKALAYR 59
>gnl|CDD|223064 PHA03375, PHA03375, hypothetical protein; Provisional.
Length = 844
Score = 31.3 bits (71), Expect = 1.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 140 VPDHIDIFHLTREMPASDKSALTCVMEVDEERVR 173
VP ++ ++LT E+ + + L + VD ER+
Sbjct: 29 VPVFVNSYNLTAELSEIEDARLARPVPVDLERID 62
>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed.
Length = 292
Score = 31.2 bits (72), Expect = 1.6
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 431 ALVG-PNGAGKSTLLNLIYG 449
A+VG PN GKSTLLN + G
Sbjct: 9 AIVGRPN-VGKSTLLNALVG 27
>gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed.
Length = 335
Score = 31.2 bits (72), Expect = 1.8
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 13/47 (27%)
Query: 432 LVG-PNGAGKSTLLNLI------YGD-----LTPSVGMVRKNSHLRF 466
LVG PN AGKSTL++ + D L P++G+VR + + F
Sbjct: 163 LVGLPN-AGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSF 208
Score = 29.3 bits (67), Expect = 7.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 117 GLLGLNGSGKSTLLAVLGN 135
GL+GL +GKSTL++ +
Sbjct: 162 GLVGLPNAGKSTLISAVSA 180
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 28.5 bits (64), Expect = 1.8
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 429 RLALVGPNGAGKSTLLNLI---YGDLTPSV 455
+A+ G +G+GKST+ + G + V
Sbjct: 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVV 30
>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
Length = 167
Score = 30.3 bits (69), Expect = 1.9
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 118 LLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREM 153
L+G GSGKSTL LG + +I + HL
Sbjct: 6 LIGSGGSGKSTLARQLGEKL-----NIPVHHLDALF 36
>gnl|CDD|224116 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway)
[DNA replication, recombination, and repair].
Length = 363
Score = 31.0 bits (71), Expect = 2.0
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 417 YRNLEFG-IDLDTRL-ALVGPNGAGKSTLLNLIY 448
+RN +DL + LVG NG GK+ LL IY
Sbjct: 11 FRNYAELDLDLSPGVNVLVGENGQGKTNLLEAIY 44
>gnl|CDD|235678 PRK06031, PRK06031, phosphoribosyltransferase; Provisional.
Length = 233
Score = 30.5 bits (69), Expect = 2.1
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 15/53 (28%)
Query: 511 GRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAI 563
GRQ + PIR L DG + + + + QA +L DALA+ +
Sbjct: 39 GRQLLLPIRGLPDGDRA--LASLIVNQASFEVL-------------DALAEHL 76
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 30.5 bits (69), Expect = 2.1
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 416 IYRNLEFGIDLDTRLA-LVGPNGAGKSTLLNLI 447
+R+LE ++ + + G NG+GKSTLL I
Sbjct: 25 AFRHLEERLEFRAPITFITGENGSGKSTLLEAI 57
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 31.3 bits (71), Expect = 2.2
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 415 WIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY-----GDLTPS 454
W Y EF D RL L G NGAGKS +L L+ G L PS
Sbjct: 13 WYYDEQEFWFR-DGRLLLRGNNGAGKSKVLELLLPFLLDGKLRPS 56
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 31.2 bits (70), Expect = 2.2
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 541 LLLLDEPTNHLDMETIDALADAINDF--------EGGLVLVSHDFRLINQV 583
++ LDEPT +LD E I++LA A+ + L++++HD + +
Sbjct: 1226 IIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELL 1276
>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is a
important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP.
Length = 154
Score = 29.8 bits (68), Expect = 2.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 429 RLALVGPNGAGKSTL 443
+ L+G GAGK+T+
Sbjct: 1 NIVLIGMMGAGKTTV 15
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 30.3 bits (69), Expect = 2.4
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 418 RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYH-----QH 472
+N++ I L + G +G+GKS+L+N L P++ + + +H
Sbjct: 12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDT---LYPALARRLHLKKEQPGNHDRIEGLEH 68
Query: 473 LHELLDLDISPL 484
+ +++ +D SP+
Sbjct: 69 IDKVIVIDQSPI 80
Score = 29.9 bits (68), Expect = 3.8
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 17/85 (20%)
Query: 196 IYDRLDDISADTAE------ARAANILH-----GLGFTKEMQQKKTKDFSGGWRMRIALA 244
I D LD ++ + A + A L GLG+ K Q T SGG RI LA
Sbjct: 125 IADVLD-MTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATT--LSGGEAQRIKLA 181
Query: 245 RALYVK---PHLLLLDEPTNHLDLD 266
+ L + L +LDEPT L
Sbjct: 182 KELSKRSTGKTLYILDEPTTGLHFH 206
>gnl|CDD|236167 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional
regulator; Reviewed.
Length = 309
Score = 30.7 bits (70), Expect = 2.5
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 429 RLALVGPNGAGKSTL 443
R+AL+G GAGKSTL
Sbjct: 135 RIALIGLRGAGKSTL 149
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 29.9 bits (68), Expect = 2.6
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 429 RLALVGPNGAGKSTL 443
R+ ++GP GAGKSTL
Sbjct: 2 RILILGPPGAGKSTL 16
>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era. Era is an essential
GTPase in Escherichia coli and many other bacteria. It
plays a role in ribosome biogenesis. Few bacteria lack
this protein [Protein synthesis, Other].
Length = 270
Score = 30.4 bits (69), Expect = 2.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 429 RLALVGPNGAGKSTLLNLIYGD 450
+A++G GKSTLLN ++G
Sbjct: 2 FVAILGRPNVGKSTLLNQLHGQ 23
>gnl|CDD|206728 cd04165, GTPBP1_like, GTP binding protein 1 (GTPBP1)-like family
includes GTPBP2. Mammalian GTP binding protein 1
(GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1
are GTPases whose specific functions remain unknown. In
mouse, GTPBP1 is expressed in macrophages, in smooth
muscle cells of various tissues and in some neurons of
the cerebral cortex; GTPBP2 tissue distribution appears
to overlap that of GTPBP1. In human leukemia and
macrophage cell lines, expression of both GTPBP1 and
GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The
chromosomal location of both genes has been identified
in humans, with GTPBP1 located in chromosome 22q12-13.1
and GTPBP2 located in chromosome 6p21-12. Human
glioblastoma multiforme (GBM), a highly-malignant
astrocytic glioma and the most common cancer in the
central nervous system, has been linked to chromosomal
deletions and a translocation on chromosome 6. The GBM
translocation results in a fusion of GTPBP2 and PTPRZ1,
a protein involved in oligodendrocyte differentiation,
recovery, and survival. This fusion product may
contribute to the onset of GBM.
Length = 224
Score = 30.0 bits (68), Expect = 3.1
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 429 RLALVGPNGAGKSTLLN-LIYGDLTPSVGMVRKNSHLRFARYHQHLHELL 477
R+A+VG AGKSTLL L G+L G R L R H HE+
Sbjct: 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKAR----LNLFR---HKHEVE 43
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 28.8 bits (64), Expect = 3.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 429 RLALVGPNGAGKSTLLNLI 447
+ + GP G+GKSTL +
Sbjct: 1 IILITGPPGSGKSTLAKKL 19
Score = 28.8 bits (64), Expect = 3.6
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Query: 115 RYGLLGLNGSGKSTLLAVLGNR-EVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVR 173
+ G GSGKSTL L + +PV +D + D L + E
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKLGIPV-ISLDDLLREEGLAELDDGELDDIDIDLELLEE 59
Query: 174 -LEKLAEQLVACEDDESQEQLMDIYDRLDDISADTA 208
L++LA+Q + + + + + D
Sbjct: 60 ILDELAKQEWVIDGVRESTLELRLEEADLVVFLDLP 95
>gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
Members of this protein were designated YjeQ and are now
designated RsgA (ribosome small subunit-dependent GTPase
A). The strongest motif in the alignment of these
proteins is GXSGVGKS[ST], a classic P-loop for
nucleotide binding. This protein has been shown to
cleave GTP and remain bound to GDP. A role as a
regulator of translation has been suggested. The Aquifex
aeolicus ortholog is split into consecutive open reading
frames. Consequently, this model was build in fragment
mode (-f option) [Protein synthesis, Translation
factors].
Length = 245
Score = 30.1 bits (68), Expect = 3.3
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 433 VGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLD 480
G +G GKS+L+N + + V + +S L ++ EL
Sbjct: 126 AGQSGVGKSSLINALDPSVKQQVNDI--SSKLGLGKHTTTHVELFHFH 171
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 30.6 bits (69), Expect = 3.5
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 25/117 (21%)
Query: 83 PKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPD 142
P+ R + +++ L+D + L GR + G++GSGKS+L + + VP +
Sbjct: 591 PEKRTNSLGTLTLSKATKHNLKDLTISLPLGRLTVVTGVSGSGKSSL---INDTLVPAVE 647
Query: 143 -----------HID------IFHLTREMPA-SDKS-ALTCVMEVDEERVRLEKLAEQ 180
I + H+TR++P S +S LT + D+ R E AEQ
Sbjct: 648 EFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYIKAFDDLR---ELFAEQ 701
Score = 29.8 bits (67), Expect = 6.0
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 234 SGGWRMRIALARALYV---KPHLLLLDEPTNHL---DLDACVWLEEELKTYKRILVIISH 287
SGG R+ LA L KP L +LDEPT L D+ A +++ + L +VII H
Sbjct: 811 SGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870
Query: 288 SQDFLNGVCTNIIHL 302
+ + V ++ L
Sbjct: 871 NMHVVK-VADYVLEL 884
>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase. The Era (E. coli Ras-like
protein)-like YfjP subfamily includes several
uncharacterized bacterial GTPases that are similar to
Era. They generally show sequence conservation in the
region between the Walker A and B motifs (G1 and G3 box
motifs), to the exclusion of other GTPases. Era is
characterized by a distinct derivative of the KH domain
(the pseudo-KH domain) which is located C-terminal to
the GTPase domain.
Length = 140
Score = 29.2 bits (66), Expect = 3.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
L+G GAGKS+L N ++G +VG R
Sbjct: 1 GLMGKTGAGKSSLCNALFGTEVAAVGDRR 29
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 30.4 bits (69), Expect = 3.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLGN 135
D +L G+R G+ G GKSTLL ++
Sbjct: 137 DGLLTCGEGQRIGIFAGAGVGKSTLLGMIAR 167
>gnl|CDD|213253 cd03286, ABC_MSH6_euk, ATP-binding cassette domain of eukaryotic
MutS6 homolog. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 218
Score = 29.7 bits (67), Expect = 3.7
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLL 444
+DL L L GPN GKSTLL
Sbjct: 22 DVDLGATSPRILVLTGPNMGGKSTLL 47
>gnl|CDD|215569 PLN03089, PLN03089, hypothetical protein; Provisional.
Length = 373
Score = 29.9 bits (68), Expect = 3.7
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 24/71 (33%)
Query: 381 TDKTVTFTF--------PSCG---------KIPPPVI----MVQNVSFRYSDDGPWIYRN 419
V F P+CG + PP +++N F ++GP+++ N
Sbjct: 155 ESDVVNLVFHNPGVEEDPACGPLIDAVAIKTLFPPRPTKDNLLKNGGF---EEGPYVFPN 211
Query: 420 LEFGIDLDTRL 430
+G+ L +
Sbjct: 212 SSWGVLLPPNI 222
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 30.4 bits (68), Expect = 3.7
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
P+I + SF ++ W+ L + I + LVG G GK+T++ + L + +
Sbjct: 435 PIISLSGNSFAFTSCSLWLLEQLLWNIQNNEPTLLVGETGTGKTTMIQYLALKLHFKLTV 494
Query: 458 VRK 460
+ K
Sbjct: 495 INK 497
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 29.9 bits (68), Expect = 3.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 430 LALVGPNGAGKSTL 443
+ + GP GAGKSTL
Sbjct: 36 VGIAGPPGAGKSTL 49
Score = 28.7 bits (65), Expect = 8.2
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 101 ELL-QDTMLELNCGRRY--GLLGLNGSGKSTL----LAVLGNREVPVPDHI--DIFHL 149
LL + L+ RR G+ G G+GKSTL A+L + D FHL
Sbjct: 18 PLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL 75
>gnl|CDD|184712 PRK14501, PRK14501, putative bifunctional trehalose-6-phosphate
synthase/HAD hydrolase subfamily IIB; Provisional.
Length = 726
Score = 30.3 bits (69), Expect = 4.0
Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 24/108 (22%)
Query: 150 TREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAE 209
+ A+ K AL M +E+R R++ + QE+L YD
Sbjct: 415 IEGIAAAIKRALE--MPEEEQRERMQAM------------QERLRR-YD---------VH 450
Query: 210 ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLD 257
A++ L L E + +AR LLLLD
Sbjct: 451 KWASDFLDELREAAEKNKAFASKPITPAAAEEIIARYRAASRRLLLLD 498
>gnl|CDD|233237 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins [Energy metabolism, ATP-proton
motive force interconversion].
Length = 440
Score = 30.0 bits (68), Expect = 4.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 105 DTMLELNCGRRYGLLGLNGSGKSTLL 130
D +L + G+R G+ +G GKSTLL
Sbjct: 155 DGLLTVGKGQRIGIFAGSGVGKSTLL 180
>gnl|CDD|213251 cd03284, ABC_MutS1, ATP-binding cassette domain of MutS1 homolog.
The MutS protein initiates DNA mismatch repair by
recognizing mispaired and unpaired bases embedded in
duplex DNA and activating endo- and exonucleases to
remove the mismatch. Members of the MutS family possess
C-terminal domain with a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 216
Score = 29.5 bits (67), Expect = 4.3
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 408 RYSDDGPWIYRNLEFGIDLDTRLALV-GPNGAGKSTLL 444
+ D+ P++ + E +D + ++ L+ GPN AGKST L
Sbjct: 12 QVLDNEPFVPNDTE--LDPERQILLITGPNMAGKSTYL 47
>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins,
mitofusins, and guanylate-binding proteins. The dynamin
family of large mechanochemical GTPases includes the
classical dynamins and dynamin-like proteins (DLPs) that
are found throughout the Eukarya. This family also
includes bacterial DLPs. These proteins catalyze
membrane fission during clathrin-mediated endocytosis.
Dynamin consists of five domains; an N-terminal G domain
that binds and hydrolyzes GTP, a middle domain (MD)
involved in self-assembly and oligomerization, a
pleckstrin homology (PH) domain responsible for
interactions with the plasma membrane, GED, which is
also involved in self-assembly, and a proline arginine
rich domain (PRD) that interacts with SH3 domains on
accessory proteins. To date, three vertebrate dynamin
genes have been identified; dynamin 1, which is brain
specific, mediates uptake of synaptic vesicles in
presynaptic terminals; dynamin-2 is expressed
ubiquitously and similarly participates in membrane
fission; mutations in the MD, PH and GED domains of
dynamin 2 have been linked to human diseases such as
Charcot-Marie-Tooth peripheral neuropathy and rare forms
of centronuclear myopathy. Dynamin 3 participates in
megakaryocyte progenitor amplification, and is also
involved in cytoplasmic enlargement and the formation of
the demarcation membrane system. This family also
includes mitofusins (MFN1 and MFN2 in mammals) that are
involved in mitochondrial fusion. Dynamin oligomerizes
into helical structures around the neck of budding
vesicles in a GTP hydrolysis-dependent manner.
Length = 180
Score = 29.1 bits (66), Expect = 4.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 429 RLALVGPNGAGKSTLLNLIYGD 450
LA+VG AGKSTLLN + G+
Sbjct: 2 LLAVVGEFSAGKSTLLNALLGE 23
>gnl|CDD|180660 PRK06696, PRK06696, uridine kinase; Validated.
Length = 223
Score = 29.6 bits (67), Expect = 4.4
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 103 LQDTMLELNCGR--RYGLLGLNGSGKST----LLAVLGNREVPV-PDHIDIFHLTRE 152
L + +L LN R R + G+ SGK+T L + R PV ID FH R
Sbjct: 10 LAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRV 66
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 29.5 bits (67), Expect = 4.4
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 430 LALVGPNGAGKSTLL 444
+ALVG +G+GK+TL
Sbjct: 2 IALVGHSGSGKTTLA 16
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 30.2 bits (69), Expect = 4.5
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 207 TAEARAANILH-----GLGFTKEMQQKKTKDFSGGWRMRIALARALYVK---PHLLLLDE 258
A + A L GLG+ K Q T SGG R+ LA+ L + L +LDE
Sbjct: 794 EAIPKIARKLQTLVDVGLGYIKLGQPATT--LSGGEAQRVKLAKELSKRSTGKTLYILDE 851
Query: 259 PT 260
PT
Sbjct: 852 PT 853
>gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional.
Length = 467
Score = 29.8 bits (66), Expect = 4.5
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 22 AAAPKKPTTSATNDVKPEQITNGV----KQEPEEISPEEALCRKLEADA-KLNAEARACT 76
AAA KP A++ PE+ + ++ + S E + L+ A K +A AR
Sbjct: 376 AAATDKPPEKASDKPSPEKTSEKTPDKSHEKQLDKSSEPVAEKALDKTADKPDAAARLPA 435
Query: 77 GSLAVHPKSRD 87
+ P++RD
Sbjct: 436 ETADRPPRARD 446
>gnl|CDD|226648 COG4185, COG4185, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 187
Score = 29.4 bits (66), Expect = 4.6
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 20/73 (27%)
Query: 434 GPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPE 493
GPNG+GKST+ L P + V N+ A+ ISP + P
Sbjct: 9 GPNGSGKSTVYASTLAPLLPGI--VFVNADEIAAQ------------ISPDN------PT 48
Query: 494 VKDREEMRKIIGR 506
+ R I R
Sbjct: 49 SAAIQAARVAIDR 61
Score = 28.2 bits (63), Expect = 9.0
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 120 GLNGSGKST-----LLAVLGNREVPVPDHI 144
G NGSGKST L +L D I
Sbjct: 9 GPNGSGKSTVYASTLAPLLPGIVFVNADEI 38
>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin. This family consists of several
bacterial zeta toxin proteins. Zeta toxin is thought to
be part of a postregulational killing system in
bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 29.2 bits (66), Expect = 4.7
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVGMVRKN-SHLRFARYHQHLHELLDLD 480
L G GAGK+ L + +L +VR + LR YH EL D
Sbjct: 17 LGGQPGAGKTELARALLEELG-GGNVVRIDPDELR--TYHPDYDELQKAD 63
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 28.6 bits (64), Expect = 4.7
Identities = 14/74 (18%), Positives = 28/74 (37%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQS 490
+ G G+GK+TL + L + + K + L + E LD L +L
Sbjct: 2 LITGTPGSGKTTLAKELAERLGDVLRDLAKENGLVLELDEEITDESKRLDEDKLAKLLDK 61
Query: 491 FPEVKDREEMRKII 504
++ + + +
Sbjct: 62 LEKIIEELAEGENV 75
>gnl|CDD|234125 TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family
is one of a number of homologous small, well-conserved
GTP-binding proteins with pleiotropic effects. Bacterial
members are designated HflX, following the naming
convention in Escherichia coli where HflX is encoded
immediately downstream of the RNA chaperone Hfq, and
immediately upstream of HflKC, a membrane-associated
protease pair with an important housekeeping function.
Over large numbers of other bacterial genomes, the
pairing with hfq is more significant than with hflK and
hlfC. The gene from Homo sapiens in this family has been
named PGPL (pseudoautosomal GTP-binding protein-like)
[Unknown function, General].
Length = 351
Score = 29.7 bits (68), Expect = 4.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 429 RLALVGPNGAGKSTLLNLIYG 449
+ALVG AGKSTL N + G
Sbjct: 191 TVALVGYTNAGKSTLFNALTG 211
>gnl|CDD|187834 cd09703, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily
protein Cas6. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas6 is an endoribonuclease that generates crRNAs,
predicted subunit of Cascade complex; RAMP superfamily
protein; Possesses double RRM/ferredoxin fold; also
known as Cse3 family.
Length = 188
Score = 29.3 bits (66), Expect = 5.0
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 71 EARACTGSLAVHPKSRDVKIANFSITFHGCEL 102
EA + P+ R V+IA F++ EL
Sbjct: 128 EALGIQARPFIGPRRRTVRIAGFTVVGFALEL 159
>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN;
Validated.
Length = 433
Score = 29.9 bits (67), Expect = 5.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVLGN 135
D++ G+R G+ G GKSTLLA+L N
Sbjct: 147 DSVATCGEGQRVGIFSAPGVGKSTLLAMLCN 177
>gnl|CDD|213243 cd03276, ABC_SMC6_euk, ATP-binding cassette domain of eukaryotic
SM6 proteins. The structural maintenance of chromosomes
(SMC) proteins are large (approximately 110 to 170 kDa),
and each is arranged into five recognizable domains.
Amino-acid sequence homology of SMC proteins between
species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 198
Score = 29.1 bits (66), Expect = 5.1
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 418 RNLEFGIDLDTRLA-LVGPNGAGKSTLLNLI 447
R+L+ I+ R+ +VG NG+GKS +L +
Sbjct: 13 RHLQ--IEFGPRVNFIVGNNGSGKSAILTAL 41
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 29.6 bits (66), Expect = 5.3
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 5 AKKKQQQKKKEQAKGRGAAAPKKPTTSATNDVKPEQITNGVKQEPEEISPEEALCRKLEA 64
A KQ+++ E+ AA K +A K + ++ EE++ EE K +A
Sbjct: 107 ALAKQKREGTEEVTEEEKAAAKAKAAAAAK-AKAAALAKQKREGTEEVTEEEEETDKEKA 165
Query: 65 DAKLNAEARACTGSLA 80
AK A A+A +LA
Sbjct: 166 KAKAAAAAKAKAAALA 181
>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed.
Length = 472
Score = 29.6 bits (67), Expect = 5.4
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 429 RLALVG-PNGAGKSTLLNLIYGD 450
R+ALVG PN GKS+LLN + G+
Sbjct: 213 RVALVGKPN-VGKSSLLNKLAGE 234
>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only].
Length = 454
Score = 29.5 bits (67), Expect = 5.7
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 429 RLALVGPNGAGKSTLLN 445
++ ++G GKS+LLN
Sbjct: 219 KVVIIGRPNVGKSSLLN 235
>gnl|CDD|206683 cd01896, DRG, Developmentally Regulated GTP-binding protein (DRG).
The developmentally regulated GTP-binding protein (DRG)
subfamily is an uncharacterized member of the Obg
family, an evolutionary branch of GTPase superfamily
proteins. GTPases act as molecular switches regulating
diverse cellular processes. DRG2 and DRG1 comprise the
DRG subfamily in eukaryotes. In view of their widespread
expression in various tissues and high conservation
among distantly related species in eukaryotes and
archaea, DRG proteins may regulate fundamental cellular
processes. It is proposed that the DRG subfamily
proteins play their physiological roles through RNA
binding.
Length = 233
Score = 29.1 bits (66), Expect = 5.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 429 RLALVGPNGAGKSTLLN 445
R+ALVG GKSTLL+
Sbjct: 2 RVALVGFPSVGKSTLLS 18
>gnl|CDD|217666 pfam03665, UPF0172, Uncharacterized protein family (UPF0172). In
Chlamydomonas reinhardtii the protein TLA1 (truncated
light-harvesting chlorophyll antenna size) apparently
regulates genes that define the chlorophyll-a antenna
size in the photosynthetic apparatus. This family was
formerly known as UPF0172.
Length = 195
Score = 28.8 bits (65), Expect = 6.0
Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 11/114 (9%)
Query: 97 FHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPAS 156
+H E D+ ++ + + + +L ++ N ++ + + +
Sbjct: 81 YHANERFDDSSPS-PVAKKIADK-IAENFNNAVLLLVDNEKLESDPRVPALQVYEKDGKK 138
Query: 157 D----KSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISAD 206
K+ + D E ++ L+ + QL+D D LDDIS D
Sbjct: 139 GWRWKKADKSLEAVEDWEEAN--EILSALL---QSGAYRQLVDFDDHLDDISKD 187
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 29.4 bits (66), Expect = 6.0
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 6 KKKQQQKKKEQAKGRGAAAPKKPTTSATNDVKPEQITNGVKQEPEEISPEEALCRKLEAD 65
++Q+K+ E+A + A K+ + + + E A +K A+
Sbjct: 112 AAQEQKKQAEEAAKQAALKQKQ-----AEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAE 166
Query: 66 AKLNAEARA 74
AK AEA A
Sbjct: 167 AKKKAEAEA 175
>gnl|CDD|224031 COG1106, COG1106, Predicted ATPases [General function prediction
only].
Length = 371
Score = 29.4 bits (66), Expect = 6.1
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 417 YRNL-EFGIDLDTRL-ALVGPNGAGKSTLLNLIY 448
+++ E ++ ++ + G NGAGKS LL +Y
Sbjct: 10 FKSFRELELEDFGKINIIYGANGAGKSNLLEALY 43
>gnl|CDD|224304 COG1386, scpB, Chromosome segregation and condensation protein B
[DNA replication, recombination and repair].
Length = 184
Score = 28.8 bits (65), Expect = 6.2
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 29/115 (25%)
Query: 153 MPASDKSALTCVME----VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTA 208
DK L ++E E + L++LAE L D + L ++ + +D
Sbjct: 1 TRMLDKMELKALIEALLFAGGEPLSLKELAEILGIVSADAIIDALAELKEEYED------ 54
Query: 209 EARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHL 263
R ++ + GWR++ A Y+ L P L
Sbjct: 55 --RGLELVE---------------VAEGWRLQTKQEYAEYL--EKLQEQRPKREL 90
>gnl|CDD|238910 cd01935, Ntn_CGH_like, Choloylglycine hydrolase (CGH)_like. This
family of choloylglycine hydrolase-like proteins
includes conjugated bile acid hydrolase (CBAH),
penicillin V acylase (PVA), acid ceramidase (AC), and
N-acylethanolamine-hydrolyzing acid amidase (NAAA) which
cleave non-peptide carbon-nitrogen bonds in bile salt
constituents. These enzymes have an N-terminal
nucleophilic cysteine, as do other members of the Ntn
hydrolase family to which they belong. This
nucleophilic cysteine is exposed by post-translational
prossessing of the precursor protein.
Length = 229
Score = 28.9 bits (65), Expect = 6.4
Identities = 21/124 (16%), Positives = 34/124 (27%), Gaps = 25/124 (20%)
Query: 406 SFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLN-----LIYGDLTPSVGMV 458
S +Y RN++F D + RL + + YG S G +
Sbjct: 3 SIVAQTKDGGVYLGRNMDFSFDYELRLLVFPRGYQRNGQTGDKSKWYAKYGSGGTSAGYI 62
Query: 459 RK----NSH------LRFARYH--QHLHELLDLDISPLD------YMLQSFPEVKDREEM 500
N L F Y + + + S EVK+ +
Sbjct: 63 GLVDGMNEKGLSVSLLYFPGYAYYPAGIKEGKDGLPAFELIRWVLENCDSVEEVKEALKK 122
Query: 501 RKII 504
I+
Sbjct: 123 IPIV 126
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 28.3 bits (64), Expect = 6.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 432 LVGPNGAGKSTLLNLI 447
L GP+G GKSTLL +
Sbjct: 4 LSGPSGVGKSTLLKRL 19
>gnl|CDD|227254 COG4917, EutP, Ethanolamine utilization protein [Amino acid
transport and metabolism].
Length = 148
Score = 28.3 bits (63), Expect = 6.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 429 RLALVGPNGAGKSTLLNLIYGDLT 452
R+A VG G GK+TL +YG+ T
Sbjct: 3 RIAFVGQVGCGKTTLFQSLYGNDT 26
>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 413
Score = 29.2 bits (66), Expect = 6.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
D +L + G+R G+ +G GKSTLL ++
Sbjct: 129 DGLLTIGKGQRVGIFAGSGVGKSTLLGMI 157
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 29.3 bits (66), Expect = 6.8
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 572 LVSHDFRLINQV-AEEIWICENGKVTKWEGNILD 604
L+ L QV + E GK++K GN++D
Sbjct: 304 LMGLGLPLPTQVFSHGYLTVEGGKMSKSLGNVVD 337
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway
ATPase [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 441
Score = 29.5 bits (67), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
D +L G+R G+ +G GKSTLL ++
Sbjct: 155 DGLLTCGKGQRIGIFAGSGVGKSTLLGMI 183
>gnl|CDD|233193 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 29.6 bits (67), Expect = 6.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 431 ALVGPNGAGKSTLLNLI 447
+ GP G+GK+TLLN +
Sbjct: 438 LIFGPTGSGKTTLLNFL 454
>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase.
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first
identified as part of the Human Cancer Genome Project.
It maps to chromosome 4q12 and is sometimes referred to
as Arfrp2 (Arf-related protein 2). This is a novel
subfamily identified in human cancers that is
uncharacterized to date.
Length = 164
Score = 28.6 bits (64), Expect = 7.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 119 LGLNGSGKSTLLAVLGNREVP 139
LGL+G+GK++LL L +
Sbjct: 5 LGLDGAGKTSLLHSLSSERSL 25
>gnl|CDD|206666 cd01878, HflX, HflX GTPase family. HflX subfamily. A distinct
conserved domain with a glycine-rich segment N-terminal
of the GTPase domain characterizes the HflX subfamily.
The E. coli HflX has been implicated in the control of
the lambda cII repressor proteolysis, but the actual
biological functions of these GTPases remain unclear.
HflX is widespread, but not universally represented in
all three superkingdoms.
Length = 204
Score = 28.6 bits (65), Expect = 7.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 431 ALVGPNGAGKSTLLNLIYGD 450
ALVG AGKSTL N + G
Sbjct: 45 ALVGYTNAGKSTLFNALTGA 64
>gnl|CDD|233051 TIGR00611, recf, recF protein. All proteins in this family for
which functions are known are DNA binding proteins that
assist the filamentation of RecA onto DNA for the
initiation of recombination or recombinational repair.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 365
Score = 29.2 bits (66), Expect = 7.5
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 417 YRNLEFGIDLDT---RLALVGPNGAGKSTLLNLIY 448
+RN + +DL+ +VGPNG GK+ LL IY
Sbjct: 11 FRNYD-AVDLELSPGVNVIVGPNGQGKTNLLEAIY 44
>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only].
Length = 298
Score = 29.1 bits (66), Expect = 7.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 431 ALVGPNGAGKSTLLNLIYGD 450
A++G GKSTLLN + G
Sbjct: 10 AIIGRPNVGKSTLLNALVGQ 29
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 28.7 bits (65), Expect = 7.6
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 430 LALVGPNGAGKSTLLNLIYGD--LTPSVGM 457
+ L GP+G GKSTL+ + D L SV
Sbjct: 7 IVLSGPSGVGKSTLVKALLEDDKLRFSVSA 36
>gnl|CDD|214940 smart00962, SRP54, SRP54-type protein, GTPase domain. This entry
represents the GTPase domain of the 54 kDa SRP54
component, a GTP-binding protein that interacts with the
signal sequence when it emerges from the ribosome. SRP54
of the signal recognition particle has a three-domain
structure: an N-terminal helical bundle domain, a GTPase
domain, and the M-domain that binds the 7s RNA and also
binds the signal sequence. The extreme C-terminal region
is glycine-rich and lower in complexity and poorly
conserved between species. The GTPase domain is
evolutionary related to P-loop NTPase domains found in a
variety of other proteins.
Length = 197
Score = 28.5 bits (65), Expect = 7.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 431 ALVGPNGAGKST 442
LVGPNG GK+T
Sbjct: 5 LLVGPNGVGKTT 16
Score = 28.5 bits (65), Expect = 9.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 118 LLGLNGSGKSTLLAVLGNR 136
L+G NG GK+T +A L R
Sbjct: 6 LVGPNGVGKTTTIAKLAAR 24
>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family. Septins are a
conserved family of GTP-binding proteins associated with
diverse processes in dividing and non-dividing cells.
They were first discovered in the budding yeast S.
cerevisiae as a set of genes (CDC3, CDC10, CDC11 and
CDC12) required for normal bud morphology. Septins are
also present in metazoan cells, where they are required
for cytokinesis in some systems, and implicated in a
variety of other processes involving organization of the
cell cortex and exocytosis. In humans, 12 septin genes
generate dozens of polypeptides, many of which comprise
heterooligomeric complexes. Since septin mutants are
commonly defective in cytokinesis and formation of the
neck formation of the neck filaments/septin rings,
septins have been considered to be the primary
constituents of the neck filaments. Septins belong to
the GTPase superfamily for their conserved GTPase motifs
and enzymatic activities.
Length = 275
Score = 29.1 bits (66), Expect = 7.7
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 432 LVGPNGAGKSTLLN-LIYGDLTPSVGMVRKNSHLR 465
+VG +G GKST +N L L PS H+
Sbjct: 9 VVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHIT 43
>gnl|CDD|213244 cd03277, ABC_SMC5_euk, ATP-binding cassette domain of eukaryotic
SMC5 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 213
Score = 28.7 bits (65), Expect = 7.8
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 432 LVGPNGAGKSTLLNLI 447
++GPNG+GKS+++ I
Sbjct: 28 IIGPNGSGKSSIVCAI 43
>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta), together with SR-alpha, forms the
heterodimeric signal recognition particle (SRP). Signal
recognition particle receptor, beta subunit (SR-beta).
SR-beta and SR-alpha form the heterodimeric signal
recognition particle (SRP or SR) receptor that binds SRP
to regulate protein translocation across the ER
membrane. Nascent polypeptide chains are synthesized
with an N-terminal hydrophobic signal sequence that
binds SRP54, a component of the SRP. SRP directs
targeting of the ribosome-nascent chain complex (RNC) to
the ER membrane via interaction with the SR, which is
localized to the ER membrane. The RNC is then
transferred to the protein-conducting channel, or
translocon, which facilitates polypeptide translation
across the ER membrane or integration into the ER
membrane. SR-beta is found only in eukaryotes; it is
believed to control the release of the signal sequence
from SRP54 upon binding of the ribosome to the
translocon. High expression of SR-beta has been observed
in human colon cancer, suggesting it may play a role in
the development of this type of cancer.
Length = 202
Score = 28.4 bits (64), Expect = 8.0
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 432 LVGPNGAGKSTLLN-LIYG-------DLTPSVGMVRKNSH 463
L+GP+ +GK+ L L G + P+V NS
Sbjct: 5 LLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSS 44
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as
thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de novo
or salvage biosynthesis of thymidine triphosphate (TTP).
Length = 200
Score = 28.4 bits (64), Expect = 8.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 431 ALVGPNGAGKSTLLNLI 447
G +GAGK+TL+ L+
Sbjct: 4 VFEGIDGAGKTTLIELL 20
>gnl|CDD|219873 pfam08506, Cse1, Cse1. This domain is present in Cse1 nuclear
export receptor proteins. Cse1 mediates the nuclear
export of importin alpha. This domain contains HEAT
repeats.
Length = 370
Score = 28.8 bits (65), Expect = 8.4
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 8/37 (21%)
Query: 400 IMVQNVSFRYSD-----DGP--WIYRNLEFGIDLDTR 429
+++ NV+ R SD D P +I R+LE G D DTR
Sbjct: 192 VVLPNVTLRESDEELFEDDPIEYIRRDLE-GSDSDTR 227
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 28.9 bits (65), Expect = 8.5
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 12/92 (13%)
Query: 2 PSDAKKKQQQKKKEQAKGRGAAAPKKPTTSATNDVKPEQITNGVKQEPEEISPEEALCRK 61
+ AK K+ K K + K + ++ + PE+ E+ RK
Sbjct: 53 AAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDT-----------PEDELAEKLRLRK 101
Query: 62 LEADAKLNAEARACTGSLAVHPKSRDVKIANF 93
L+ ++ LN A G A + + F
Sbjct: 102 LQEESDLNN-AADLFGGPAPTKDTDLESLDLF 132
>gnl|CDD|197777 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS
family.
Length = 185
Score = 28.3 bits (64), Expect = 8.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 430 LALVGPNGAGKSTLL 444
+ + GPN GKST L
Sbjct: 2 VIITGPNMGGKSTYL 16
>gnl|CDD|215959 pfam00508, PPV_E2_N, E2 (early) protein, N terminal.
Length = 201
Score = 28.2 bits (64), Expect = 8.8
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 5/25 (20%)
Query: 175 EKLAEQLVACEDDESQEQLMDIYDR 199
E L+E+L A QEQL+++Y++
Sbjct: 1 ETLSERLDAL-----QEQLLELYEK 20
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 28.2 bits (64), Expect = 8.8
Identities = 11/17 (64%), Positives = 14/17 (82%), Gaps = 3/17 (17%)
Query: 431 ALVGPNGAGKSTLLNLI 447
A+VGPNG+GKS N+I
Sbjct: 26 AIVGPNGSGKS---NII 39
>gnl|CDD|224085 COG1163, DRG, Predicted GTPase [General function prediction only].
Length = 365
Score = 28.8 bits (65), Expect = 9.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 427 DTRLALVGPNGAGKSTLLN 445
D +ALVG GKSTLLN
Sbjct: 63 DATVALVGFPSVGKSTLLN 81
>gnl|CDD|235319 PRK04914, PRK04914, ATP-dependent helicase HepA; Validated.
Length = 956
Score = 29.0 bits (66), Expect = 9.5
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 555 TIDALADAINDFE-GGLVLVSHDF 577
+A DA N FE LV+ S DF
Sbjct: 234 YAEAQHDADNPFETEQLVICSLDF 257
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 28.8 bits (64), Expect = 9.7
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
D+ML + G++ G+ +G GKSTLL ++
Sbjct: 148 DSMLTIGIGQKIGIFAGSGVGKSTLLGMI 176
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 28.1 bits (63), Expect = 9.9
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 118 LLGLNGSGKSTLLAVLGNR-EVPVPDHIDIFHLTREMPASDKSALTCVME 166
++G +GSGKSTL L PV H+D H D + +
Sbjct: 5 IIGYSGSGKSTLARKLSQHYNCPVL-HLDTLHFQPNWQERDDDDMIADIS 53
>gnl|CDD|235444 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.
Length = 854
Score = 28.9 bits (66), Expect = 9.9
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 424 IDLD--TRLALV-GPNGAGKSTLL 444
DLD RL L+ GPN AGKST +
Sbjct: 601 CDLDEERRLLLITGPNMAGKSTYM 624
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.395
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,638,838
Number of extensions: 3296189
Number of successful extensions: 6390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5994
Number of HSP's successfully gapped: 1354
Length of query: 629
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 526
Effective length of database: 6,369,140
Effective search space: 3350167640
Effective search space used: 3350167640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.4 bits)