RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10512
(629 letters)
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 446 bits (1149), Expect = e-146
Identities = 146/633 (23%), Positives = 225/633 (35%), Gaps = 133/633 (21%)
Query: 52 ISPEEALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELN 111
+ ++A E + + D+ FS+ + LL T L L
Sbjct: 400 LHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLK 459
Query: 112 CGRRYGLLGLNGSGKSTLLAVLGNREV---PVPDHIDIFHLTREMPA--SDKSALTCVME 166
RRYG+ G NG GKSTL+ + N +V P + ++ ++ SD S L V E
Sbjct: 460 RARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFE 519
Query: 167 VDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQ 226
+ + L GFT EM
Sbjct: 520 SGVGT-------------------------------------KEAIKDKLIEFGFTDEMI 542
Query: 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIIS 286
SGGW+M++ALARA+ +LLLDEPTNHLD WL L T + IS
Sbjct: 543 AMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITIS 602
Query: 287 HSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYI 346
H FL+ VC II+ + KL+ Y GN+ F K K Y + K
Sbjct: 603 HDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKC-----PAAKAYEELSNTDLEFK--- 654
Query: 347 ARFGHGSAKLARQAQSKEKTLAKMVNQ-----GLTDKVTTDKTVTFTFPS---------- 391
++K+K + K+ N G + TD + S
Sbjct: 655 ----FPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGA 710
Query: 392 ---------CGKIPPP---VIMVQNVSFRY-----------------SDDGPWIYRNLEF 422
G++ P V +N Y S+ W ++ E
Sbjct: 711 GKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGED 770
Query: 423 GIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVG-------------------------- 456
+D + N A + I G G
Sbjct: 771 RETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMK 830
Query: 457 -------MVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGL 509
M N+ + + +++ F + R+E+ + GL
Sbjct: 831 SERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLT-RKEIEEHCSMLGL 889
Query: 510 TG-RQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEG 568
IR LS GQK ++V A WQ PHL++LDEPTN+LD +++ AL+ A+ +FEG
Sbjct: 890 DPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEG 949
Query: 569 GLVLVSHDFRLINQVAEEIWICENGKVTKWEGN 601
G+++++H + EE+W ++G++T N
Sbjct: 950 GVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHN 982
Score = 174 bits (442), Expect = 5e-46
Identities = 38/197 (19%), Positives = 75/197 (38%), Gaps = 6/197 (3%)
Query: 119 LGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLA 178
+ + + R+ + L E +M VD + +L
Sbjct: 792 IFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELV 851
Query: 179 EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKE-MQQKKTKDFSGGW 237
E + ++ LG E + + + SGG
Sbjct: 852 E-----SHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ 906
Query: 238 RMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQDFLNGVCT 297
++++ LA + +PHL++LDEPTN+LD D+ L + LK ++ ++II+HS +F +
Sbjct: 907 KVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTE 966
Query: 298 NIIHLDKRKLKYYGGNY 314
+ + ++ G N+
Sbjct: 967 EVWAVKDGRMTPSGHNW 983
Score = 159 bits (402), Expect = 5e-41
Identities = 73/410 (17%), Positives = 129/410 (31%), Gaps = 17/410 (4%)
Query: 215 ILH-GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHL-LLLDEPTNHLDLDACVWLE 272
+L GL + ++K+ M + + P L LL ++ A
Sbjct: 255 LLSRGLNERETGIKRKSAVIIDN--MCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAR 312
Query: 273 EELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQY 332
E + L + + + + + H E + + +Y
Sbjct: 313 EVTLRALKTLRRVGNVGE--DDAIPELSHAGDVS-TTLQVVNELLKDETVAPRFKIVVEY 369
Query: 333 NWEQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSC 392
I + K L + P+
Sbjct: 370 ---IAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNF 426
Query: 393 GKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452
+ N F + + + + R + GPNG GKSTL+ I
Sbjct: 427 DDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV 486
Query: 453 PSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGR 512
R + + D S LD++ +S +E ++ + +G T
Sbjct: 487 DGFPT---QEECRTVYVEHDI-DGTHSDTSVLDFVFESGVG--TKEAIKDKLIEFGFTDE 540
Query: 513 QQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVL 572
PI LS G K ++ A + +LLLDEPTNHLD + L + +N +
Sbjct: 541 MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSIT 600
Query: 573 VSHDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRAKVLKEKNKSAA 622
+SHD ++ V E I E K+ K++GN ++ + + S
Sbjct: 601 ISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKK-CPAAKAYEELSNT 649
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 169 bits (430), Expect = 2e-45
Identities = 92/522 (17%), Positives = 197/522 (37%), Gaps = 90/522 (17%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVP--VPDHIDIFHLTREMPASDKSALTCVMEVDEE 170
G G++G NG+GK+T + +L + +P D+ ++ R ++ ++ E
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE-------LQNYFE 169
Query: 171 RVRLEKLA----EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQ 226
R++ ++ Q V + ++ ++ ++D++ + + + L
Sbjct: 170 RLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD------ 223
Query: 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACV---WLEEELKTYKRILV 283
++ SGG R+A+A AL K H DEP+++LD+ + + L + ++
Sbjct: 224 -RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
Query: 284 IISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMK 343
++ H L+ + ++IH+ + G Y F K + +
Sbjct: 283 VVEHDLAVLDYLS-DVIHV----VYGEPGVYGIFSKPK-------------------GTR 318
Query: 344 NYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQ 403
N I F G K + + + L+++V ++ +P K ++
Sbjct: 319 NGINEFLQGYLK-DENVRFRPYEIRFTK---LSERVDVERETLVEYPRLVKDYGSFK-LE 373
Query: 404 NVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSH 463
I + + +VGPNG GK+T + ++ G P+ G V +
Sbjct: 374 VEPGE-------IRKG--------EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT 418
Query: 464 LRFARYHQHLHELLDLDISPLDYMLQSF-----PEVKDREEMRKIIGRYGLTGRQQVCPI 518
+ + Q+ + + + ++ +++ G+ +
Sbjct: 419 VAYKP--QY------IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYD-RNV 469
Query: 519 RQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF----EGGLVLVS 574
LS G+ RV A + + LLDEP+ +LD+E A++ AI E ++V
Sbjct: 470 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 529
Query: 575 HDFRLINQVAEEIW-----ICENGKVTKWEGNILDYKETLRA 611
HD +I+ V++ + +G+ G L +
Sbjct: 530 HDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLAS 571
Score = 101 bits (254), Expect = 1e-22
Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 25/215 (11%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
P + ++ RY + +YR + + +VGPNG GK+T + ++ G L P++
Sbjct: 90 PEQLDEDCVHRYGVNAFVLYRL--PIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147
Query: 458 VRKNSHLRFARYHQ-----HLHELLDLDISPL--DYMLQSFPEVKD---------REEMR 501
+ + + L + +I P+ + P+ +E+
Sbjct: 148 DNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVG 207
Query: 502 KIIGRYGLTGRQQVC--PIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDAL 559
K + V + QLS G+ RV A + H DEP+++LD+ +
Sbjct: 208 KFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKV 267
Query: 560 ADAINDF--EGG-LVLVSHDFRLINQVAEEIWICE 591
A I EG +++V HD +++ +++ I
Sbjct: 268 ARVIRRLANEGKAVLVVEHDLAVLDYLSD--VIHV 300
Score = 89.3 bits (222), Expect = 1e-18
Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 35/220 (15%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
V+ + G L+ E+ G G++G NG GK+T + +L E P ++
Sbjct: 358 VEYPRLVKDY-GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW- 415
Query: 148 HLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADT 207
+ V + Q + E + + +L +
Sbjct: 416 ---------------------DLTVAYKP---QYIKAEYEGTVYEL--LSKIDSS--KLN 447
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD- 266
+ +L LG ++ + +D SGG R+A+A L + LLDEP+ +LD++
Sbjct: 448 SNFYKTELLKPLGI-IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 506
Query: 267 ---ACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLD 303
+ ++ ++ +++ H ++ V +I +
Sbjct: 507 RLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 138 bits (349), Expect = 5e-35
Identities = 79/504 (15%), Positives = 184/504 (36%), Gaps = 85/504 (16%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVP----VPDHIDIFHLTREMPASDKSA-LTCVMEV 167
G+LG NG GK+T+L +L +P + + + + +
Sbjct: 25 NTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSN 84
Query: 168 DEERVR----LEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTK 223
+ + V +E ++ L ++ I ++D + + L
Sbjct: 85 ELKIVHKIQYVEYASKFLKGTVNE--------ILTKID------ERGKKDEVKELLN-MT 129
Query: 224 EMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKR--I 281
+ K SGG R+ +A +L + + + D+P+++LD+ + + + ++ +
Sbjct: 130 NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKY 189
Query: 282 LVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAH 341
++++ H L+ + ++IH+ + YG +++ + +
Sbjct: 190 VIVVDHDLIVLDYLT-DLIHIIYGESSVYGRVSKSY------AARVGINNF--------- 233
Query: 342 MKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGK-IPPPVI 400
+K Y+ + + M+ + ++ D + K + +
Sbjct: 234 LKGYLPAENMKI---------RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQL 284
Query: 401 MVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRK 460
+V N + + + ++GPNG GK+T ++ G++T G V
Sbjct: 285 VVDNGEAKEGE-----------------IIGILGPNGIGKTTFARILVGEITADEGSVTP 327
Query: 461 NSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDR-----EEMRKIIGRYGLTGRQQV 515
+ Q + + D + Y+ + + EE+ K + + L
Sbjct: 328 E-KQILSYKPQRI--FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESN-- 382
Query: 516 CPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVL- 572
+ LS G+ ++ A + L +LD+P+++LD+E +A AI E V
Sbjct: 383 --VNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440
Query: 573 -VSHDFRLINQVAEEIWICENGKV 595
+ HD + + +A+ I + +
Sbjct: 441 IIDHDLSIHDYIADRIIVFKGEPE 464
Score = 92.8 bits (231), Expect = 5e-20
Identities = 46/230 (20%), Positives = 85/230 (36%), Gaps = 56/230 (24%)
Query: 404 NVSFRYSDDGPWIYRNLEF-GIDLDT-----RLALVGPNGAGKSTLLNLIYGDLTPSVG- 456
V RY +G F L T L ++G NG GK+T+L ++ G++ P+ G
Sbjct: 4 EVIHRYKVNG--------FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD 55
Query: 457 ---MVRKNSHLRFAR-----------------------YHQHLHELLDL---DISPLDYM 487
V K+ L+ R Y ++ + L +I
Sbjct: 56 PNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE 115
Query: 488 LQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEP 547
EVK+ M + + LS G R++ A + + + D+P
Sbjct: 116 RGKKDEVKELLNMTNLWNKD----------ANILSGGGLQRLLVAASLLREADVYIFDQP 165
Query: 548 TNHLDMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKV 595
+++LD+ +A AI + +++V HD +++ + + I I
Sbjct: 166 SSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESS 215
Score = 89.3 bits (222), Expect = 8e-19
Identities = 46/275 (16%), Positives = 87/275 (31%), Gaps = 46/275 (16%)
Query: 65 DAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGS 124
++ + + +K +L+ D E G G+LG NG
Sbjct: 247 PDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDN-GEAKEGEIIGILGPNGI 305
Query: 125 GKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVAC 184
GK+T +L + + S K Q +
Sbjct: 306 GKTTFARILVGEITADEGSVTP----EKQILSYKP--------------------QRI-- 339
Query: 185 EDDESQEQLMDIYDRLDDISAD---TAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRI 241
+ L++ S D T+ + L + + D SGG ++
Sbjct: 340 ----FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-RLLESNVNDLSGGELQKL 394
Query: 242 ALARALYVKPHLLLLDEPTNHLDLD--ACVW--LEEELKTYKRILVIISHSQDFLNGVCT 297
+A L + L +LD+P+++LD++ V ++ + K + II H + +
Sbjct: 395 YIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIAD 454
Query: 298 NIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQY 332
II G +A T L+ M ++
Sbjct: 455 RIIVFK-------GEPEKAGLATSPVTLKTGMNEF 482
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 117 bits (295), Expect = 1e-29
Identities = 52/255 (20%), Positives = 95/255 (37%), Gaps = 41/255 (16%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSV 455
+I + + G I + + + I + L G NGAGK+TLLN++ +
Sbjct: 18 SHMLIQLDQIGRMK--QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS 75
Query: 456 GMV--------RKNSHLRFARYH-----QHLHELLDLDISPLDYMLQSF---------PE 493
G V + R H L E +D ++ +
Sbjct: 76 GTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDID 135
Query: 494 VKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLD 552
+ R E +++ G++ + Q I LS G+K RV+ A L P +L+LDEP LD
Sbjct: 136 DEIRNEAHQLLKLVGMSAKAQ-QYIGYLSTGEKQRVMIARALM-GQPQVLILDEPAAGLD 193
Query: 553 METIDALADAINDF-----EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607
++L ++ ++ V+H I +I + ++G+ ++
Sbjct: 194 FIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQS---------IQQ 244
Query: 608 TLRAKVLKEKNKSAA 622
+L +N S
Sbjct: 245 GAVEDILTSENMSRF 259
Score = 94.6 bits (236), Expect = 9e-22
Identities = 47/250 (18%), Positives = 92/250 (36%), Gaps = 28/250 (11%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF 147
+++ G +L+ ++ G ++ L GLNG+GK+TLL +L E +++F
Sbjct: 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 148 HLTREMPASDKSAL-TCVMEVD---EERVRLEKLAEQLVACEDDESQEQLMDIYDRLD-- 201
+ + V E+ + + +V + + +
Sbjct: 82 GKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVV----------ISGAFKSIGVY 131
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTKDF---SGGWRMRIALARALYVKPHLLLLDE 258
D A +L +G M K + S G + R+ +ARAL +P +L+LDE
Sbjct: 132 QDIDDEIRNEAHQLLKLVG----MSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDE 187
Query: 259 PTNHLDLDACVWLEEELKTYKR-----ILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313
P LD A L L + ++ ++H + + + I+ L + G
Sbjct: 188 PAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247
Query: 314 YEAFCKTRLE 323
+ +
Sbjct: 248 EDILTSENMS 257
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 118 bits (298), Expect = 2e-28
Identities = 87/504 (17%), Positives = 187/504 (37%), Gaps = 91/504 (18%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVP--VPDHIDIFHLTREMPASDKSALTCVMEVDEE 170
G G++G NG+GKST + +L + +P D+ + R ++ ++ E
Sbjct: 47 GMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNE-------LQNYFE 99
Query: 171 RVRLEKLA----EQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQ 226
+++ ++ Q V + +++++ + D+ +A + + L
Sbjct: 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLE------ 153
Query: 227 QKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDA---CVWLEEELKTYKRILV 283
++ + SGG R+A+A AL DEP+++LD+ L + ++
Sbjct: 154 -REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 284 IISHSQDFLNGVCTNIIHLDKRKLKYYG--GNYEAFCKTRLELLENQMKQYNWEQDQIAH 341
++ H L+ + I + YG G Y F ++ + N + ++
Sbjct: 213 VVEHDLAVLDYLSDIIHVV-------YGEPGVYGIF--SQPKGTRNGINEF--------- 254
Query: 342 MKNYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIM 401
++ Y+ + ++V ++ T+P K
Sbjct: 255 LRGYLKDENVRFRPYEIKFTKTG------------ERVEIERETLVTYPRLVKDYGSFR- 301
Query: 402 VQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN 461
++ I + + +VGPNG GK+T + ++ G P+ G + +
Sbjct: 302 LEVEPGE-------IKKG--------EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD 346
Query: 462 SHLRFAR------YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQV 515
+ + Y ++ELL + ++ +++ G+
Sbjct: 347 LTVAYKPQYIKADYEGTVYELLSKIDA---------SKLNSNFYKTELLKPLGIIDLYDR 397
Query: 516 CPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGLVL- 572
+LS G+ RV A + + LLDEP+ +LD+E A++ AI +
Sbjct: 398 EV-NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
Query: 573 -VSHDFRLINQVAEEIWICENGKV 595
V HD +I+ V++ + + E
Sbjct: 457 VVEHDVLMIDYVSDRLMVFEGEPG 480
Score = 82.7 bits (205), Expect = 8e-17
Identities = 44/226 (19%), Positives = 76/226 (33%), Gaps = 61/226 (26%)
Query: 404 NVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP---------- 453
+ RY + +YR + + +VGPNG GKST + ++ G L P
Sbjct: 26 DCVHRYGVNAFVLYRL--PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 454 ---------------------SVGMVRK------NSHLRFARYHQHLHELLDLDISPLDY 486
+ V K + + L
Sbjct: 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL---------KKAD 134
Query: 487 MLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE 546
EV E+ ++ R I+ LS G+ RV A + DE
Sbjct: 135 ETGKLEEVVKALELENVLERE----------IQHLSGGELQRVAIAAALLRNATFYFFDE 184
Query: 547 PTNHLDMETIDALADAINDF--EG-GLVLVSHDFRLINQVAEEIWI 589
P+++LD+ A AI EG +++V HD +++ +++ I +
Sbjct: 185 PSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHV 230
Score = 82.0 bits (203), Expect = 2e-16
Identities = 45/272 (16%), Positives = 89/272 (32%), Gaps = 65/272 (23%)
Query: 44 GVKQEPEEISPEEALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELL 103
+K E P E K ++ E L S +++ I
Sbjct: 258 YLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEI-------- 309
Query: 104 QDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163
G G++G NG GK+T + L
Sbjct: 310 -------KKGEVIGIVGPNGIGKTTFV----------------------------KMLAG 334
Query: 164 VMEVDEERVRLEKLAEQLVACEDDESQEQL------MDIYDRLDDISAD--TAEARAANI 215
V E E ++ + + + Q +Y+ L I A + +
Sbjct: 335 VEEPTEGKIEWD---LTVA------YKPQYIKADYEGTVYELLSKIDASKLNSNFYKTEL 385
Query: 216 LHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLD----ACVWL 271
L LG ++ ++ + SGG R+A+A L + LLDEP+ +LD++ +
Sbjct: 386 LKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 444
Query: 272 EEELKTYKRILVIISHSQDFLNGVCTNIIHLD 303
++ ++ +++ H ++ V ++ +
Sbjct: 445 RHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 117 bits (294), Expect = 1e-27
Identities = 80/508 (15%), Positives = 165/508 (32%), Gaps = 93/508 (18%)
Query: 117 GLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEK 176
GL+G NG GKST L +L + P+ + P + + E + K
Sbjct: 107 GLVGTNGIGKSTALKIL-AGKQK-PNLGRF-----DDPPEWQEIIK-YFRGSELQNYFTK 158
Query: 177 LAEQLVAC---------EDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ 227
+ E + + + + + L + + + + L + + +
Sbjct: 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLK-LRMEKSPEDVKRYIKILQ-LENVLK 216
Query: 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVI 284
+ + SGG R A+ + + + + DEP+++LD+ + + L + ++
Sbjct: 217 RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC 276
Query: 285 ISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQIAHMKN 344
+ H L+ + + + Y A + + +
Sbjct: 277 VEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIFL----------------DG 320
Query: 345 YIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTFTFPSCGKIPPPVIMVQN 404
+I A Q + + T D + F++PS K + +
Sbjct: 321 HIPAENLRFRTEALQFRIADAT---------EDLQNDSASRAFSYPSLKKTQGDFV-LNV 370
Query: 405 VSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP---------SV 455
+ E L ++G NG GK+TL+ L+ G L P +V
Sbjct: 371 EEGE-------FSDS-EI-------LVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNV 415
Query: 456 GMVRKNSHLRF-ARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTG-RQ 513
M + +F Q + + + + + ++ +
Sbjct: 416 SMKPQKIAPKFPGTVRQLFFKKIR-------------GQFLNPQFQTDVVKPLRIDDIID 462
Query: 514 QVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDF--EGGL- 570
Q ++ LS G+ RV + L+DEP+ +LD E + I F
Sbjct: 463 Q--EVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT 520
Query: 571 -VLVSHDFRLINQVAEEIWICENGKVTK 597
+V HDF + +A+++ + E
Sbjct: 521 AFIVEHDFIMATYLADKVIVFEGIPSKN 548
Score = 88.2 bits (219), Expect = 2e-18
Identities = 43/241 (17%), Positives = 81/241 (33%), Gaps = 60/241 (24%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNL-----EFGIDLDTRLALVGPNGAGKSTLLNLIYGDLT 452
P + +V+ RYS + ++R + L LVG NG GKST L ++ G
Sbjct: 76 PTNLEAHVTHRYSANSFKLHRLPTPRPGQV-------LGLVGTNGIGKSTALKILAGKQK 128
Query: 453 PSVGMVRKNSHLRFARYHQHLHELLDLDISPL---------DYMLQSFPEV--------- 494
P++G + + EL + L + + P
Sbjct: 129 PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVG 188
Query: 495 ----KDREEMRK-------------IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQ 537
E+ + ++ R I +LS G+ R Q
Sbjct: 189 ELLKLRMEKSPEDVKRYIKILQLENVLKRD----------IEKLSGGELQRFAIGMSCVQ 238
Query: 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGG-LVLVSHDFRLINQVAEEIWICENGK 594
+ + DEP+++LD++ A I ++ V HD +++ +++ + I
Sbjct: 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298
Query: 595 V 595
Sbjct: 299 S 299
Score = 78.9 bits (195), Expect = 2e-15
Identities = 49/274 (17%), Positives = 95/274 (34%), Gaps = 45/274 (16%)
Query: 50 EEISPEEALCRKLEAD-AKLNAEARACTGSLAVHPKSRDVKIANFSITF--------HGC 100
S E + L+ N R + + D++ + S F G
Sbjct: 306 LPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGD 365
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH-IDIFHLTREMPASDKS 159
+L E + ++G NG+GK+TL+ +L + PD DI L M
Sbjct: 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLL-AGALK-PDEGQDIPKLNVSMKPQK-- 421
Query: 160 ALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGL 219
+ VR QL + I + + +++ L
Sbjct: 422 -IAPKFP---GTVR------QLFFKK----------IRGQFLN------PQFQTDVVKPL 455
Query: 220 GFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTY- 278
++ ++ + SGG R+A+ AL + + L+DEP+ +LD + + + ++ +
Sbjct: 456 RID-DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI 514
Query: 279 ---KRILVIISHSQDFLNGVCTNIIHLDKRKLKY 309
K+ I+ H + +I + K
Sbjct: 515 LHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKN 548
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 99 bits (250), Expect = 7e-24
Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 46/213 (21%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
+ V+N+ F Y ++++ L F ++ LA++G NG GKSTLL+L+ G P G
Sbjct: 3 KALSVENLGFYY-QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 458 VRKNSHLRFARY----HQHLHELLDLDISPLDYMLQ---------SFPEVKDREEMRKII 504
+ + Q S LD +L + P+ D + + +
Sbjct: 62 I------EVYQSIGFVPQFFS--SPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQAL 113
Query: 505 GRYGLT---GRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLD-------M 553
LT R LS GQ+ ++ A +A L+LLDEPT+ LD +
Sbjct: 114 DYLNLTHLAKR----EFTSLSGGQRQLILIARAIA-SECKLILLDEPTSALDLANQDIVL 168
Query: 554 ETIDALADAINDFEG-GLVLVSHDFRLINQVAE 585
+ LA + + +V +H NQV
Sbjct: 169 SLLIDLAQS----QNMTVVFTTHQ---PNQVVA 194
Score = 53.7 bits (130), Expect = 4e-08
Identities = 46/195 (23%), Positives = 69/195 (35%), Gaps = 55/195 (28%)
Query: 88 VKIANFSITFHGCE-LLQDTMLELNCGRRYGLLGLNGSGKS----TLLAVL----GNREV 138
+ + N + L Q +LN G +LG NG GKS LL + G EV
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV 64
Query: 139 P-----VP-DHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQ 192
VP F + V+++ V
Sbjct: 65 YQSIGFVPQFFSSPFAYS-------------VLDI--------------V---------- 87
Query: 193 LMDIYDRLDDISADTAE--ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVK 250
LM ++ + + A L L + +++ SGG R I +ARA+ +
Sbjct: 88 LMGRSTHINTFAKPKSHDYQVAMQALDYLN-LTHLAKREFTSLSGGQRQLILIARAIASE 146
Query: 251 PHLLLLDEPTNHLDL 265
L+LLDEPT+ LDL
Sbjct: 147 CKLILLDEPTSALDL 161
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 91.9 bits (229), Expect = 5e-21
Identities = 57/202 (28%), Positives = 80/202 (39%), Gaps = 37/202 (18%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKN-------SHLRFARY-- 469
+ + R L LVGPNGAGKSTLL + G +T G ++ S + A +
Sbjct: 18 PLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALHRA 76
Query: 470 --HQHLHELLDLDISPLDY-MLQSFPEVKDREEMRKIIGRYGLT---GRQQVCPIRQLSD 523
Q Y L + E + + G L GR QLS
Sbjct: 77 YLSQQQT--PPFATPVWHYLTLHQHDK-TRTELLNDVAGALALDDKLGR----STNQLSG 129
Query: 524 GQKCRVVFA-------YLAWQAPHLLLLDEPTNHLDM---ETIDALADAINDFEGGLVLV 573
G+ RV A A A LLLLDEP N LD+ +D + A++ +V+
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMS 189
Query: 574 SHDFRLINQVAEEIWICENGKV 595
SHD + A W+ + GK+
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKM 211
Score = 67.6 bits (166), Expect = 8e-13
Identities = 35/178 (19%), Positives = 52/178 (29%), Gaps = 38/178 (21%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIF-HLTREMPASDKS 159
L E+ G L+G NG+GKSTLLA + I A+ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA-GMTSGKGSIQFAGQPLEAWSATKLA 72
Query: 160 ALTCVMEVDEERVRLEKLAEQLVAC-----EDDESQEQLMDIYDRLDDISADTAEARAAN 214
+ ++ + E + L + +
Sbjct: 73 LHRAYLS-QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAG---ALA------LDDKLGR 122
Query: 215 ILHGLGFTKEMQQKKTKDFSGGWRMRIALARAL-------YVKPHLLLLDEPTNHLDL 265
+ L SGG R+ LA + LLLLDEP N LD+
Sbjct: 123 STNQL--------------SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 166
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 91.1 bits (227), Expect = 1e-20
Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 37/243 (15%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
++ V+ +++ YSD + + + I A++G NG GKSTL G L PS G
Sbjct: 6 YILKVEELNYNYSDGTHAL-KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR 64
Query: 458 VR--------KNSHLRFARY----------HQHLHELLDLDIS--PLDYMLQSFPEVKDR 497
+ + R +Q + D+S ++ L E++ R
Sbjct: 65 ILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL-PEDEIRKR 123
Query: 498 -EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLDMET 555
+ K G L + P LS GQK RV A L + P +L+LDEPT LD
Sbjct: 124 VDNALKRTGIEHLKDK----PTHCLSFGQKKRVAIAGVLVME-PKVLILDEPTAGLDPMG 178
Query: 556 IDALADAINDF--EGGL--VLVSHDFRLINQVAEEIWICENGKVTKWEG---NILDYKET 608
+ + + + E G+ ++ +HD ++ + +++ + G+V +G + KE
Sbjct: 179 VSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL-QGNPKEVFAEKEV 237
Query: 609 LRA 611
+R
Sbjct: 238 IRK 240
Score = 52.6 bits (127), Expect = 1e-07
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+ D R N L G ++ K T S G + R+A+A L ++P +L+LDEPT
Sbjct: 115 LPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAG 173
Query: 263 LDLDACVWLEEELKTYKRI----LVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFC 318
LD + + L ++ ++I +H D + C N+ + + ++ G E F
Sbjct: 174 LDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF- 232
Query: 319 KTRLELLEN 327
E++
Sbjct: 233 -AEKEVIRK 240
Score = 36.4 bits (85), Expect = 0.022
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLL 130
L+ + + G +LG NG GKSTL
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLF 51
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 84.6 bits (210), Expect = 2e-18
Identities = 53/225 (23%), Positives = 86/225 (38%), Gaps = 40/225 (17%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLD----TRLALVGPNGAGKSTLLNLIYGDLTPSV 455
I V NVS + P + LE + L L + G G+GKSTLL ++ G + P+
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALE-NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 456 GMVR---KNSHLRFARY----------HQHLHELLDLDIS--PLDYMLQSFPEVKDREEM 500
G V + R Q E + +++ ++ +
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP--------DRDP 113
Query: 501 RKIIGRY----GLTGRQ--QVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLDM 553
++ + GL P LS G+K RV A + + P +L+LDEP LD
Sbjct: 114 VPLVKKAMEFVGLDFDSFKDRVPFF-LSGGEKRRVAIASVIVHE-PDILILDEPLVGLDR 171
Query: 554 ETIDALADAINDF-EGGL--VLVSHDFRLINQVAEEIWICENGKV 595
E L + + G +L+SHD + + + + E GK
Sbjct: 172 EGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKK 216
Score = 55.3 bits (134), Expect = 1e-08
Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 208 AEARAANILHGLGFTKE-MQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD-- 264
+ +G + + + SGG + R+A+A + +P +L+LDEP LD
Sbjct: 113 PVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 172
Query: 265 -----LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCK 319
L + KT +++ISH + + ++ L+K K + G E K
Sbjct: 173 GKTDLLRIVEKWKTLGKT----VILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
Query: 320 TRLELLENQM 329
++M
Sbjct: 229 YDPRFFTSKM 238
Score = 35.6 bits (83), Expect = 0.031
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLL 130
L++ L +N G + G GSGKSTLL
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLL 50
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 87.6 bits (216), Expect = 6e-18
Identities = 101/665 (15%), Positives = 194/665 (29%), Gaps = 200/665 (30%)
Query: 35 DVKP-EQITNGV--KQEPEEI----SPEEA-------LCRK------------LEAD--- 65
D K + + + K+E + I L K L +
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 66 --AKLNAEARACTGSLAVHPKSRDV------KIANFSITFHGCEL-LQDTMLELNCGRRY 116
+ + E R + ++ + RD A ++++ L L+ +LEL +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 117 GLLGLNGSGKSTL-LAVLGNREVPVPDHID--IFHLTREMPASDKSALTCVMEVDEERVR 173
+ G+ GSGK+ + L V V +D IF L
Sbjct: 154 LIDGVLGSGKTWVALDVC--LSYKVQCKMDFKIFWLN----------------------- 188
Query: 174 LEKLAEQLVACEDDESQ-EQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD 232
L C E+ E L + ++D ++ ++NI + +
Sbjct: 189 -------LKNCNSPETVLEMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQA-------- 232
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYK---RILVIISHSQ 289
+R L Y LL+L V + + +IL+ Q
Sbjct: 233 -----ELRRLLKSKPYENC-LLVLLN----------VQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 290 --DFLNGVCTNIIHLDKRKLKYYGGNYEAFC----KTRLELLENQMKQYN-------WE- 335
DFL+ T I LD + ++ R + L ++ N E
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 336 -QDQIAHMKNYIARFGHGSAKLARQAQSK--EKTLAKMVNQGLTDKVTTDKTVTFT-FPS 391
+D +A N+ + + +N L + FP
Sbjct: 337 IRDGLATWDNW------------KHVNCDKLTTIIESSLNV-LEPAEYRKMFDRLSVFPP 383
Query: 392 CGKIPPPVIMVQNVSFRYSDDGPW---IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY 448
IP ++ + W I ++ ++ + +LV + + IY
Sbjct: 384 SAHIPTILLSLI-----------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 449 GDLTPSVGMVRKNSHLRF-ARYHQHL-HELLDLDISPLD--------YMLQSFPEVKDRE 498
+L + H Y+ + DL LD + L++ +
Sbjct: 433 LELKVKL-ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 499 EMRKIIGRYGLTGRQQVCPIRQLSDG---QKCRVVFAYLAWQAPHLLL-----LDEPTNH 550
R + + L QK R AW A +L L +
Sbjct: 492 LFRMV---F-------------LDFRFLEQKIR--HDSTAWNASGSILNTLQQLKFYKPY 533
Query: 551 L--DMETIDALADAINDF--EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYK 606
+ + + L +AI DF + L+ + + ++A + E+ + ++
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA---LMAEDEAI---------FE 581
Query: 607 ETLRA 611
E +
Sbjct: 582 EAHKQ 586
Score = 46.4 bits (109), Expect = 3e-05
Identities = 51/347 (14%), Positives = 98/347 (28%), Gaps = 120/347 (34%)
Query: 29 TT---SATNDVKPEQITN-GVKQEPEEISPEEA--LCRK-LEADA-KLNAEARACTGSLA 80
TT T+ + T+ + ++P+E L K L+ L E T
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--LTT--- 325
Query: 81 VHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTL----------- 129
+P +++ + E ++D + + + L +S+L
Sbjct: 326 -NP----RRLSIIA------ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 130 ---LAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQ-LVACE 185
L+V P I P S + + + V + KL + LV +
Sbjct: 375 FDRLSVF-------PPSAHI-------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 186 DDESQEQLMDIYDRLDDISADTAEARAANILHG--LGFTKEMQQKKTKDFS-----GGWR 238
ES + IY L E A LH + + + D +
Sbjct: 421 PKESTISIPSIYLEL----KVKLENEYA--LHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 239 MRIALARALYVKPHLLLLDE-------PTNHLDLDACVWLE------------------- 272
I + HL ++ LD +LE
Sbjct: 475 SHIG-----H---HLKNIEHPERMTLFRMVFLDFR---FLEQKIRHDSTAWNASGSILNT 523
Query: 273 -EELKTYKRILV----------------IISHSQDFLNGVCTNIIHL 302
++LK YK + + ++ + T+++ +
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Score = 35.6 bits (81), Expect = 0.060
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 39/129 (30%)
Query: 469 YHQHLHELLDLDISPLDY----MLQSFPE-------VKDREEMRKIIGRYGLTGRQQVCP 517
+H H H +D + Y +L F + KD ++M K I L+ +
Sbjct: 1 HHHHHH--MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI----LSKEEIDHI 54
Query: 518 IRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDF 577
I +F W LL + + F ++ +++ F
Sbjct: 55 IMSKDAVSGTLRLF----W-----TLLSKQEE------------MVQKFVEEVLRINYKF 93
Query: 578 RLINQVAEE 586
L++ + E
Sbjct: 94 -LMSPIKTE 101
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 80.5 bits (199), Expect = 4e-17
Identities = 51/214 (23%), Positives = 92/214 (42%), Gaps = 28/214 (13%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR---LALVGPNGAGKSTLLNLIYGDLTPSV 455
+I ++NV + +LE I+L+ + ++GPNG+GK+TLL I G L P
Sbjct: 1 MIQLKNVGITL-SGKGYERFSLE-NINLEVNGEKVIILGPNGSGKTTLLRAISG-LLPYS 57
Query: 456 GMVRKN----SHLR-FARY------HQHLHELLDLDISPLDYMLQSFPEVK--DREEMRK 502
G + N +R + RY + ++ + + E+K DR+ +
Sbjct: 58 GNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVY-------LYEELKGLDRDLFLE 110
Query: 503 IIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLDMETIDALAD 561
++ L + +LS GQ V + LA Q P ++ LDEP ++D ++
Sbjct: 111 MLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQ-PEIVGLDEPFENVDAARRHVISR 169
Query: 562 AINDFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
I ++ +LV+H+ ++N E G
Sbjct: 170 YIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNR 203
Score = 76.6 bits (189), Expect = 1e-15
Identities = 42/218 (19%), Positives = 83/218 (38%), Gaps = 48/218 (22%)
Query: 88 VKIANFSITFHGCEL----LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDH 143
+++ N IT G L++ LE+N G + +LG NGSGK+TLL + + +P +
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAI-SGLLPYSGN 59
Query: 144 I-----DIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYD 198
I ++ + +R + + + D
Sbjct: 60 IFINGMEVRKIRNY-------------------IRYSTNLPEAYEIG--------VTVND 92
Query: 199 ------RLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPH 252
L + +L L +E+ ++K S G + + + AL +P
Sbjct: 93 IVYLYEELKGLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPE 148
Query: 253 LLLLDEPTNHLDLDACVWLEEELKTYKRILVIISHSQD 290
++ LDEP ++D + +K Y + ++++H D
Sbjct: 149 IVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELD 186
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 78.3 bits (194), Expect = 1e-16
Identities = 38/228 (16%), Positives = 80/228 (35%), Gaps = 40/228 (17%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGM 457
+ ++++S Y + + I+ + GPNG GK+TLL I L P G
Sbjct: 9 SKLEIRDLSVGY---DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 458 VRKNSH-LRFARYH-----QHLHELLDLDISPLDYM-----LQSFPEVKDREEMRKIIGR 506
+ N + + + + + IS DY+ L K+ + +
Sbjct: 66 IIYNGVPITKVKGKIFFLPEEII--VPRKISVEDYLKAVASLYGVKVNKNE--IMDALES 121
Query: 507 YGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA----PHLLLLDEPTNHLDMETIDALADA 562
+ ++ + +LS G RV A + +LD+P +D ++ + +
Sbjct: 122 VEVLDLKK--KLGELSQGTIRRVQLA----STLLVNAEIYVLDDPVVAIDEDSKHKVLKS 175
Query: 563 INDF---EGGLVLVSHDFRLINQVAEEIWICENGKVTKWEGNILDYKE 607
I + +G +++ S + + +D K+
Sbjct: 176 ILEILKEKGIVIISSRE---ELSYCDVNENLHKYST------KIDKKD 214
Score = 74.1 bits (183), Expect = 3e-15
Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 29/204 (14%)
Query: 108 LELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEV 167
+ + G G NG GK+TL + ++ + + + +
Sbjct: 30 MTIEKGNVVNFHGPNGIGKTTL--------------LKT--ISTYLKPLKGEIIYNGVPI 73
Query: 168 DEERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ 227
+ + ++ L E+ + S E + L + + + + L + +
Sbjct: 74 TKVKGKIFFLPEE-IIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLD--LK 128
Query: 228 KKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDAC--VW--LEEELKTYKRILV 283
KK + S G R+ LA L V + +LD+P +D D+ V + E LK +++
Sbjct: 129 KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 188
Query: 284 IISHSQDFLNGVCTNIIHLDKRKL 307
C +L K
Sbjct: 189 SSREELS----YCDVNENLHKYST 208
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 74.1 bits (183), Expect = 6e-15
Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 23/194 (11%)
Query: 77 GSLAVHPKSRD---VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
GS +H V + + E+L+ E+ G +GL+G NG+GK+T
Sbjct: 2 GSDKIHHHHHHMGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTT---- 57
Query: 134 GNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKL---AEQLVACEDDESQ 190
+ I ++ + S V EE + KL + +
Sbjct: 58 ----------LRI--ISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG 105
Query: 191 EQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVK 250
+ + S+ E G E + + +S G ++ +ARAL V
Sbjct: 106 IEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVN 164
Query: 251 PHLLLLDEPTNHLD 264
P L +LDEPT+ LD
Sbjct: 165 PRLAILDEPTSGLD 178
Score = 69.9 bits (172), Expect = 2e-13
Identities = 52/245 (21%), Positives = 100/245 (40%), Gaps = 40/245 (16%)
Query: 398 PVIMVQNVSFRYSD----DGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP 453
++V+++ R G + F I+ L+GPNGAGK+T L +I + P
Sbjct: 14 GAVVVKDLRKRIGKKEILKG------ISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP 67
Query: 454 SVGMVRKN-----SHLRFARYH-----QHLHELLDLDISPLDYM-----LQSFPEVKDRE 498
S G+V R + ++ ++Y+ + + E
Sbjct: 68 SSGIVTVFGKNVVEEPHEVRKLISYLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEE 125
Query: 499 EMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQA----PHLLLLDEPTNHLDME 554
+ + GL + + + S G +++ A +A P L +LDEPT+ LD+
Sbjct: 126 MVERATEIAGLGEKIKD-RVSTYSKGMVRKLLIA----RALMVNPRLAILDEPTSGLDVL 180
Query: 555 TIDALADAINDF--EGGLVLVS-HDFRLINQVAEEIWICENGKVTKWEGNILDYKETLRA 611
+ + EG +LVS H+ + + + I + NG + + G + + KE +A
Sbjct: 181 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE-TGTVEELKERYKA 239
Query: 612 KVLKE 616
+ ++E
Sbjct: 240 QNIEE 244
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 71.4 bits (176), Expect = 5e-14
Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 38/211 (18%)
Query: 419 NLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR--------KNSHLRF---- 466
+ ++ ++GPNG+GKSTL+N+I G L G V K +
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 467 ARYHQHLHELLDLDISPLDYML------------QSFP------EVKDREEMRKIIGRYG 508
R Q L ++ + L+ +L F E + E+ KI+
Sbjct: 85 VRTFQTPQPLKEM--TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 509 LTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPT---NHLDMETIDALADAIN 564
L+ +LS GQ V L P ++++DEP I +
Sbjct: 143 LSHLYDR-KAGELSGGQMKLVEIGRALMTN-PKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 565 DFEGGLVLVSHDFRLINQVAEEIWICENGKV 595
+++ H ++ + +++ NG++
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
Score = 45.6 bits (109), Expect = 2e-05
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 208 AEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPT---NHLD 264
+A IL L + +K + SGG + + RAL P ++++DEP
Sbjct: 130 MVEKAFKILEFLKLSHLYDRK-AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 265 LDACVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLD 303
ELK +II H D + ++ +
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMF 227
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 70.4 bits (173), Expect = 3e-13
Identities = 59/240 (24%), Positives = 103/240 (42%), Gaps = 41/240 (17%)
Query: 396 PPPVIMVQNVSFRYSDDGPWIY--RNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTP 453
+I + N++ + I N+ + ++G +GAGKSTL+ + P
Sbjct: 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 454 SVGMVR---------KNSHLRFARYH-----QHLHELLDLDIS---------PLDYMLQS 490
+ G V S L AR QH + LL S PL+ L +
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN-LLS---SRTVFGNVALPLE--LDN 134
Query: 491 FPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTN 549
P+ + + + +++ GL + P LS GQK RV A LA P +LL D+ T+
Sbjct: 135 TPKDEVKRRVTELLSLVGLGDKHDSYP-SNLSGGQKQRVAIARALASN-PKVLLCDQATS 192
Query: 550 HLDMET---IDALADAINDFEGGL--VLVSHDFRLINQVAEEIWICENGKVTKWEGNILD 604
LD T I L IN GL +L++H+ ++ ++ + + + NG++ + + + +
Sbjct: 193 ALDPATTRSILELLKDINR-RLGLTILLITHEMDVVKRICDCVAVISNGELIE-QDTVSE 250
Score = 41.1 bits (97), Expect = 8e-04
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 24/98 (24%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL----------- 282
SGG + R+A+ARAL P +LL D+ T+ LD T + IL
Sbjct: 165 SGGQKQRVAIARALASNPKVLLCDQATSALD----------PATTRSILELLKDINRRLG 214
Query: 283 ---VIISHSQDFLNGVCTNIIHLDKRKLKYYGGNYEAF 317
++I+H D + +C + + +L E F
Sbjct: 215 LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 252
Score = 33.8 bits (78), Expect = 0.14
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 88 VKIANFSITFHG----CELLQDTMLELNCGRRYGLLGLNGSGKSTLL 130
+K++N + FH + L + L + G+ YG++G +G+GKSTL+
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLI 71
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 64.4 bits (158), Expect = 7e-12
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 46/197 (23%)
Query: 416 IYRNLEF--GIDLDTR----LALVGPNGAGKSTLLNLIYGDL-TPSVGMVRKN------- 461
+ R E GI L + ++++G +G+GKSTLL ++ G L P+ G V
Sbjct: 13 VIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGKVFLEGKEVDYT 71
Query: 462 -----SHLR-------FARYHQHLHELLDLDIS-------PLDYMLQSFPEVKDREEMRK 502
S LR F ++ L+ +++ P+ P+ + +E
Sbjct: 72 NEKELSLLRNRKLGFVFQFHY-----LIP-ELTALENVIVPMLK--MGKPKKEAKERGEY 123
Query: 503 IIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET---IDAL 559
++ GL + P +LS G++ RV A P LL DEPT +LD + +
Sbjct: 124 LLSELGLGDKLSRKP-YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182
Query: 560 ADAINDFEGGLVLVSHD 576
IN+ +V+V+H+
Sbjct: 183 FLKINEGGTSIVMVTHE 199
Score = 51.7 bits (125), Expect = 1e-07
Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 37/191 (19%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP-----VPD 142
++ N G E+L+ L + G ++G +GSGKSTLL +LG + P +
Sbjct: 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLE 64
Query: 143 HIDIFHLTREMPASDKSALTCVMEVDEERVRLEK---------LAEQLVACEDDESQEQL 193
++ + + + +R K L +L A E+ +
Sbjct: 65 GKEVDYTNEKELS---------------LLRNRKLGFVFQFHYLIPELTALENVI----V 105
Query: 194 MDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHL 253
+ A+ R +L LG ++ +K + SGG + R+A+ARAL +P L
Sbjct: 106 PMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKPYE-LSGGEQQRVAIARALANEPIL 161
Query: 254 LLLDEPTNHLD 264
L DEPT +LD
Sbjct: 162 LFADEPTGNLD 172
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 64.0 bits (157), Expect = 1e-11
Identities = 46/204 (22%), Positives = 69/204 (33%), Gaps = 79/204 (38%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI---YGDLTPSVG 456
I +N+ FRY D P I N+ I + +VG +G+GKSTL LI Y P G
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY---IPENG 64
Query: 457 MVRKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIG---------- 505
V L+D D++ D +R+ +G
Sbjct: 65 QV-----------------LIDGHDLALAD--PNW---------LRRQVGVVLQDNVLLN 96
Query: 506 -------RYGLTG--RQQVCP----------IRQLSDG---------------QKCRVVF 531
G ++V I +L +G Q+ R+
Sbjct: 97 RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAI 156
Query: 532 AYLAWQAPHLLLLDEPTNHLDMET 555
A P +L+ DE T+ LD E+
Sbjct: 157 ARALVNNPKILIFDEATSALDYES 180
Score = 48.6 bits (117), Expect = 2e-06
Identities = 47/190 (24%), Positives = 72/190 (37%), Gaps = 61/190 (32%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVL--------GNREVPVPDHIDIFHLTRE 152
+L + L + G G++G +GSGKSTL ++ G +V + D D+
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG--QVLI-DGHDLALAD-- 77
Query: 153 MPASDKSALTCVMEVDEERVRLEKLAEQ--LVACEDDESQEQLM---DIYD--RLDDISA 205
L Q +V Q+ ++ I D L +
Sbjct: 78 ---------------------PNWLRRQVGVV------LQDNVLLNRSIIDNISLANPGM 110
Query: 206 DTAE----ARAANILHGLGFTKEMQQK-KTK------DFSGGWRMRIALARALYVKPHLL 254
+ A+ A H F E+++ T SGG R RIA+ARAL P +L
Sbjct: 111 SVEKVIYAAKLAGA-HD--FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 167
Query: 255 LLDEPTNHLD 264
+ DE T+ LD
Sbjct: 168 IFDEATSALD 177
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 62.6 bits (153), Expect = 3e-11
Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 43/190 (22%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDL-TPSVGMVRKN------------SHLR 465
++L+ + ++++GP+G+GKST+LN+I G L P+ G V + + +R
Sbjct: 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81
Query: 466 -------FARYHQHLHELLDLDIS-------PLDYMLQSFPEVKDREEM-RKIIGRYGLT 510
F +++ L+ ++ PL + + ++R + + + L
Sbjct: 82 RDKIGFVFQQFN-----LIP-LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135
Query: 511 GRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET---IDALADAINDFE 567
R QLS GQ+ RV A P ++L D+PT LD +T I L +N+ +
Sbjct: 136 ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED 195
Query: 568 GG-LVLVSHD 576
G +V+V+HD
Sbjct: 196 GKTVVVVTHD 205
Score = 58.3 bits (142), Expect = 1e-09
Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 33/156 (21%)
Query: 123 GSGKSTLLAVLGNREVP-----VPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEK- 176
GSGKST+L ++G + P D+I L + ++R +K
Sbjct: 41 GSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT---------------KIRRDKI 85
Query: 177 --------LAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQK 228
L L A E+ E L I+ +S + RA L +
Sbjct: 86 GFVFQQFNLIPLLTALENVE----LPLIFKYRGAMSGEERRKRALECLKMAELEERFANH 141
Query: 229 KTKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
K SGG + R+A+ARAL P ++L D+PT LD
Sbjct: 142 KPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 64.3 bits (157), Expect = 9e-11
Identities = 65/266 (24%), Positives = 95/266 (35%), Gaps = 102/266 (38%)
Query: 393 GKIPPPV---IMVQNVSFRY--SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI 447
G P + + V F Y P + + L + LALVG +G GKST++ L+
Sbjct: 1021 GLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079
Query: 448 ---YGDLTPSVGMVRKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKI 503
Y P G V LD +I L+ +Q R
Sbjct: 1080 ERFY---DPMAGSV-----------------FLDGKEIKQLN--VQWL---------RAQ 1108
Query: 504 IG-----------------RYGLTGRQ-------QVCPI--------------------- 518
+G YG R +
Sbjct: 1109 LGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168
Query: 519 -RQLSDGQKCRVVFAYLAWQA----PHLLLLDEPTNHLDMETIDALADAINDFEGGL--V 571
QLS GQK R+ A +A PH+LLLDE T+ LD E+ + +A++ G +
Sbjct: 1169 GTQLSGGQKQRIAIA----RALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCI 1224
Query: 572 LVSHDFRL--INQVAEEIWICENGKV 595
+++H RL I Q A+ I + +NGKV
Sbjct: 1225 VIAH--RLSTI-QNADLIVVIQNGKV 1247
Score = 54.7 bits (132), Expect = 9e-08
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
Query: 210 ARAANILHGLGFTKEMQQK-------KTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
A+ ANI F + K K SGG + RIA+ARAL +PH+LLLDE T+
Sbjct: 1145 AKEANIHQ---FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSA 1201
Query: 263 LD 264
LD
Sbjct: 1202 LD 1203
Score = 54.3 bits (131), Expect = 1e-07
Identities = 58/257 (22%), Positives = 94/257 (36%), Gaps = 86/257 (33%)
Query: 393 GKIPPPV---IMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI- 447
G P + + +N+ F Y S I + L + +ALVG +G GKST + L+
Sbjct: 378 GHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ 437
Query: 448 --YGDLTPSVGMVRKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKII 504
Y P GMV +D DI ++ V+ +R+II
Sbjct: 438 RLY---DPLDGMV-----------------SIDGQDIRTIN--------VRY---LREII 466
Query: 505 G-----------------RYGLTG--RQQV---CP-------IRQL-------------- 521
G RYG ++ I +L
Sbjct: 467 GVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ 526
Query: 522 -SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFR 578
S GQK R+ A + P +LLLDE T+ LD E+ + A++ G ++++H
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS 586
Query: 579 LINQVAEEIWICENGKV 595
+ + A+ I + G +
Sbjct: 587 TV-RNADVIAGFDGGVI 602
Score = 49.3 bits (118), Expect = 3e-06
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG + RIA+ARAL P +LLLDE T+ LD
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALD 558
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 61.5 bits (150), Expect = 2e-10
Identities = 59/245 (24%), Positives = 92/245 (37%), Gaps = 81/245 (33%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I +NV F Y+D +++ F + LALVGP+GAGKST+L L++ S G +R
Sbjct: 54 IEFENVHFSYADGRE-TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR 112
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG-------------- 505
+ DIS S +R IG
Sbjct: 113 IDGQ----------------DIS--QVTQAS---------LRSHIGVVPQDTVLFNDTIA 145
Query: 506 ---RYGLTG--RQQVCP----------IRQLSDG---------------QKCRVVFAYLA 535
RYG +V I +G +K RV A
Sbjct: 146 DNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTI 205
Query: 536 WQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRL---INQVAEEIWIC 590
+AP ++LLDE T+ LD A+ ++ ++V+H RL +N A++I +
Sbjct: 206 LKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAH--RLSTVVN--ADQILVI 261
Query: 591 ENGKV 595
++G +
Sbjct: 262 KDGCI 266
Score = 41.4 bits (98), Expect = 5e-04
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELK--TYKRILVIISH 287
SGG + R+A+AR + P ++LLDE T+ LD ++ L R ++++H
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAH 247
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 59.0 bits (144), Expect = 5e-10
Identities = 43/206 (20%), Positives = 73/206 (35%), Gaps = 81/206 (39%)
Query: 399 VIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI---YGDLTPSV 455
++ ++V F Y DD I R++ F ++ +A GP+G GKST+ +L+ Y P+
Sbjct: 1 MLSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY---QPTA 56
Query: 456 GMVRKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIG--------- 505
G + +D I + L+++ R IG
Sbjct: 57 GEI-----------------TIDGQPID--NISLENW---------RSQIGFVSQDSAIM 88
Query: 506 --------RYGLTG---RQQVCP----------IRQLSDG---------------QKCRV 529
YGL G + + + + D Q+ R+
Sbjct: 89 AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRL 148
Query: 530 VFAYLAWQAPHLLLLDEPTNHLDMET 555
A + P +L+LDE T LD E+
Sbjct: 149 AIARAFLRNPKILMLDEATASLDSES 174
Score = 43.6 bits (104), Expect = 9e-05
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG R R+A+ARA P +L+LDE T LD
Sbjct: 141 SGGQRQRLAIARAFLRNPKILMLDEATASLD 171
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 61.1 bits (149), Expect = 6e-10
Identities = 50/206 (24%), Positives = 78/206 (37%), Gaps = 83/206 (40%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI---YGDLTPSVG 456
I + +VSF+Y+D+ I +++ I+ +A VG +G GKSTL+NLI Y D + G
Sbjct: 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-D--VTSG 396
Query: 457 MVRKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIG---------- 505
+ L+D +I D++ S +R IG
Sbjct: 397 QI-----------------LIDGHNIK--DFLTGS---------LRNQIGLVQQDNILFS 428
Query: 506 -------RYGLTG--RQQVCP----------IRQLSDG---------------QKCRVVF 531
G ++V I L G QK R+
Sbjct: 429 DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 488
Query: 532 A--YLAWQAPHLLLLDEPTNHLDMET 555
A +L P +L+LDE T+ LD+E+
Sbjct: 489 ARIFLN--NPPILILDEATSALDLES 512
Score = 40.3 bits (95), Expect = 0.002
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG + R+++AR P +L+LDE T+ LD
Sbjct: 479 SGGQKQRLSIARIFLNNPPILILDEATSALD 509
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 60.1 bits (145), Expect = 7e-10
Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 10/173 (5%)
Query: 142 DHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDRLD 201
+ +E +++K + E +I+
Sbjct: 158 REVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFT 217
Query: 202 DISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALA------RALYVKPHLLL 255
+ RA L E +++ SGG R+ + LA L + LL+
Sbjct: 218 EGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLI 277
Query: 256 LDEPTNHLDLDACVWLEEELKTYKRI---LVIISHSQDFLNGVCTNIIHLDKR 305
LDEPT +LD + L ++ Y + ++++SH ++ + ++I +
Sbjct: 278 LDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA-DHVIRISLE 329
Score = 52.4 bits (125), Expect = 2e-07
Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 469 YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVC-------PIRQL 521
++ + +S + + + +++ R + P+ L
Sbjct: 190 VKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFL 249
Query: 522 SDGQKCRVVFA-------YLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG---LV 571
S G++ + A YLA + LL+LDEPT +LD E L + + ++
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEIS-LLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 572 LVSHDFRLINQVAEEI 587
LVSHD L + I
Sbjct: 309 LVSHDEELKDAADHVI 324
Score = 36.2 bits (83), Expect = 0.024
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 417 YRNLEFGIDLDTRL-ALVGPNGAGKSTLLNLIY 448
+ + ++ + ++G NG+GKS+LL+ I
Sbjct: 14 HSDTV--VEFKEGINLIIGQNGSGKSSLLDAIL 44
Score = 28.5 bits (63), Expect = 7.5
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 118 LLGLNGSGKSTLL 130
++G NGSGKS+LL
Sbjct: 28 IIGQNGSGKSSLL 40
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 58.7 bits (143), Expect = 7e-10
Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 63/231 (27%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
++++NV+ + + G + +++ F I+ LA+ G GAGK++LL +I G+L PS G ++
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
Query: 460 KNSHLRFA------------------------RYHQHLHE-LLDLDISPLDYMLQSFPEV 494
+ + F RY + L+ D + F E
Sbjct: 67 HSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED-------ISKFAE- 118
Query: 495 KDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDME 554
KD +G G+T LS GQ+ R+ A ++ L LLD P +LD+
Sbjct: 119 KDNIV----LGEGGIT----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 164
Query: 555 TIDALADAINDFE---GGL------VLVSHDFRLINQVAEEIWICENGKVT 596
T + FE L +LV+ + + A++I I G
Sbjct: 165 TEKEI------FESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSY 208
Score = 45.2 bits (108), Expect = 2e-05
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVIIS 286
SGG R RI+LARA+Y L LLD P +LD ++CV + + RILV +
Sbjct: 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV--CKLMANKTRILV--T 187
Query: 287 HSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLE 326
+ L I+ L + +Y G + + +
Sbjct: 188 SKMEHLKK-ADKILILHEGSSYFY-GTFSELQNLQPDFSS 225
Score = 30.6 bits (70), Expect = 1.1
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLG 134
L+D ++ G+ + G G+GK++LL ++G
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 57.9 bits (141), Expect = 2e-09
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 194 MDIYDR----LDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYV 249
+ +Y L ++ + R + LG + +K SGG R R+ALARAL +
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVI 143
Query: 250 KPHLLLLDEPTNHLDLDACVWLEEELKTYKRIL----VIISHSQD 290
+P LLLLDEP + +DL L EEL+ +R + ++H
Sbjct: 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Score = 56.8 bits (138), Expect = 4e-09
Identities = 52/169 (30%), Positives = 66/169 (39%), Gaps = 60/169 (35%)
Query: 421 EFGIDLDTR-----LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHE 475
F +++D L+GP GAGKS L LI G + P G VR
Sbjct: 13 NFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR---------------- 56
Query: 476 LLDLDISPL------------DYMLQSFP------------------EVKDR-EEMRKII 504
L DI+PL DY L FP E R EM + +
Sbjct: 57 LNGADITPLPPERRGIGFVPQDYAL--FPHLSVYRNIAYGLRNVERVERDRRVREMAEKL 114
Query: 505 GRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLD 552
G L R+ +LS G++ RV A L Q P LLLLDEP + +D
Sbjct: 115 GIAHLLDRK----PARLSGGERQRVALARALVIQ-PRLLLLDEPLSAVD 158
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 59.1 bits (144), Expect = 2e-09
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI 447
+ +NV+F Y RN+ I +ALVG +G+GKST+ +LI
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
Score = 45.7 bits (109), Expect = 4e-05
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 197 YDRLDDISADTAE--ARAANILHGLGFTKEMQQK-KTK------DFSGGWRMRIALARAL 247
Y R ++ S + E AR A + F +M T SGG R RIA+ARAL
Sbjct: 439 YARTEEYSREQIEEAARMAYAMD---FINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495
Query: 248 YVKPHLLLLDEPTNHLD 264
+L+LDE T+ LD
Sbjct: 496 LRDSPILILDEATSALD 512
Score = 31.0 bits (71), Expect = 1.3
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 520 QLSDGQKCRVVFA--YLAWQAPHLLLLDEPTNHLDMET 555
LS GQ+ R+ A L +P +L+LDE T+ LD E+
Sbjct: 480 LLSGGQRQRIAIARALLR-DSP-ILILDEATSALDTES 515
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 58.0 bits (141), Expect = 5e-09
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI 447
+ V++V+F Y ++ F I +ALVG +G+GKST+ NL
Sbjct: 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLF 389
Score = 44.1 bits (105), Expect = 1e-04
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG R R+A+ARAL +L+LDE T+ LD
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALD 512
Score = 30.6 bits (70), Expect = 1.6
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 520 QLSDGQKCRVVFA--YLAWQAPHLLLLDEPTNHLDMET 555
LS GQ+ RV A L AP +L+LDE T+ LD E+
Sbjct: 480 SLSGGQRQRVAIARALLR-DAP-VLILDEATSALDTES 515
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 56.0 bits (136), Expect = 8e-09
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 34/195 (17%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDI- 146
+ + + + G E+L+ L+ G ++G +GSGKST L + E P I +
Sbjct: 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 66
Query: 147 -FHLTREMPASDKSALTCVMEVDEERVR----------------LEKLAEQLVACEDDES 189
++ + + ++ R R LE + E +
Sbjct: 67 GQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI------- 119
Query: 190 QEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYV 249
++ +S A RA L +G + Q K SGG + R+++ARAL +
Sbjct: 120 ---------QVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM 170
Query: 250 KPHLLLLDEPTNHLD 264
+P +LL DEPT+ LD
Sbjct: 171 EPDVLLFDEPTSALD 185
Score = 49.1 bits (118), Expect = 2e-06
Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 47/214 (21%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR-KNSHLRFARY-HQHLHEL 476
G+ L R ++++G +G+GKST L I PS G + ++ R L
Sbjct: 24 GVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83
Query: 477 LDLDISPLDYML----QSF---------------P-EVK--DREEMRKI----IGRYGLT 510
+ L L Q F P +V + + R+ + + G+
Sbjct: 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID 143
Query: 511 GRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLDME-------TIDALADA 562
R Q LS GQ+ RV A LA + P +LL DEPT+ LD E + LA+
Sbjct: 144 ERAQGKYPVHLSGGQQQRVSIARALAME-PDVLLFDEPTSALDPELVGEVLRIMQQLAE- 201
Query: 563 INDFEG-GLVLVSHDFRLINQVAEEIWICENGKV 595
EG +V+V+H+ V+ + GK+
Sbjct: 202 ----EGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 55.7 bits (135), Expect = 9e-09
Identities = 59/243 (24%), Positives = 105/243 (43%), Gaps = 52/243 (21%)
Query: 390 PSCGKIPP-----PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDT----RLALVGPNGAGK 440
S G +P +I V + + L+ GI++ + ++GP+G+GK
Sbjct: 10 HSSGLVPRGSHMLQMIDVHQLKKSFGS-----LEVLK-GINVHIREGEVVVVIGPSGSGK 63
Query: 441 STLL---NL----------IYG-DLTPS----------VGMVRKNSHLRFARYHQHLHEL 476
ST L NL I G +L VGMV + +L F H+ L
Sbjct: 64 STFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNL-FP----HMTVL 118
Query: 477 LDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLA 535
++ ++P+ ++ +P K + +++ + GL + P LS GQ RV A LA
Sbjct: 119 NNITLAPM--KVRKWPREKAEAKAMELLDKVGLKDKAHAYP-DSLSGGQAQRVAIARALA 175
Query: 536 WQAPHLLLLDEPTNHLDMETIDALADAINDF-EGGL--VLVSHDFRLINQVAEEIWICEN 592
+ P ++L DEPT+ LD E + + + G+ V+V+H+ +V + + +
Sbjct: 176 ME-PKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDG 234
Query: 593 GKV 595
G +
Sbjct: 235 GYI 237
Score = 45.7 bits (109), Expect = 2e-05
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 203 ISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEPTNH 262
+ AEA+A +L +G K+ SGG R+A+ARAL ++P ++L DEPT+
Sbjct: 131 WPREKAEAKAMELLDKVGL-KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSA 189
Query: 263 LD 264
LD
Sbjct: 190 LD 191
Score = 30.3 bits (69), Expect = 1.7
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL 130
+ + +F E+L+ + + G ++G +GSGKST L
Sbjct: 25 IDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFL 67
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 55.6 bits (135), Expect = 9e-09
Identities = 52/247 (21%), Positives = 84/247 (34%), Gaps = 84/247 (34%)
Query: 400 IMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMV 458
I +V+F Y +++ F I T ALVG G+GKST+ L+Y
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY---------- 67
Query: 459 RKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKIIG------------ 505
RF Y + +++ Y S +R IIG
Sbjct: 68 ------RF--YDAEGDIKIGGKNVN--KYNRNS---------IRSIIGIVPQDTILFNET 108
Query: 506 -----RYGLTG--RQQVCP----------IRQLSDG---------------QKCRVVFAY 533
YG ++V I L ++ R+ A
Sbjct: 109 IKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIAR 168
Query: 534 LAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--LVLVSHDFRL---INQVAEEIW 588
+ P +++ DE T+ LD +T A+ D L++++H RL + AE I
Sbjct: 169 CLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAH--RLSTISS--AESII 224
Query: 589 ICENGKV 595
+ GK+
Sbjct: 225 LLNKGKI 231
Score = 41.8 bits (99), Expect = 3e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
SGG R RIA+AR L P +++ DE T+ LD
Sbjct: 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLD 187
Score = 28.7 bits (65), Expect = 5.2
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 78 SLAVHPKSRDVKIANFSITFH-----GCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAV 132
SL H K V I + F L+ + G L+G GSGKST+ +
Sbjct: 6 SLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65
Query: 133 L 133
L
Sbjct: 66 L 66
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 55.7 bits (135), Expect = 2e-08
Identities = 44/193 (22%), Positives = 67/193 (34%), Gaps = 66/193 (34%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTP 453
I V Y R++ G+ R + L+GP+G+GK+T+L LI G P
Sbjct: 13 MTIEFVGVEKIYPGG----ARSVR-GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP 67
Query: 454 SVGMVRKNSHLRFARYHQHLHELLDLDISPL------------DYMLQSFP--------- 492
+ G V + ++ L +Y L F
Sbjct: 68 TKGDVW----------------IGGKRVTDLPPQKRNVGLVFQNYAL--FQHMTVYDNVS 109
Query: 493 -----------EVKDR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAP 539
E+ R E+ + + R +LS GQ+ RV A LA + P
Sbjct: 110 FGLREKRVPKDEMDARVRELLRFMRLESYANRF----PHELSGGQQQRVALARALAPR-P 164
Query: 540 HLLLLDEPTNHLD 552
+LL DEP +D
Sbjct: 165 QVLLFDEPFAAID 177
Score = 54.2 bits (131), Expect = 6e-08
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 194 MDIYD------RLDDISADTAEARAANILH--GLGFTKEMQQKKTKDFSGGWRMRIALAR 245
M +YD R + D +AR +L L + + SGG + R+ALAR
Sbjct: 102 MTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE---SYANRFPHELSGGQQQRVALAR 158
Query: 246 ALYVKPHLLLLDEPTNHLDL 265
AL +P +LL DEP +D
Sbjct: 159 ALAPRPQVLLFDEPFAAIDT 178
Score = 29.9 bits (68), Expect = 2.6
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 88 VKIANFSITFHGCEL-LQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVP 139
++ + G ++ ++ G GLLG +GSGK+T+L ++ E P
Sbjct: 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP 67
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 56.1 bits (136), Expect = 2e-08
Identities = 53/221 (23%), Positives = 73/221 (33%), Gaps = 94/221 (42%)
Query: 393 GKIPPPV---IMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI- 447
+ +NV F Y + I+++ I + ALVGP+G+GKST+L+L+
Sbjct: 332 ILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL 391
Query: 448 --YGDLTPSVGMVRKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMRKII 504
Y D P+ G + LD DI L + +R I
Sbjct: 392 RLY-D--PASGTI-----------------SLDGHDIRQL-----------NPVWLRSKI 420
Query: 505 G-----------------RYGLTGRQQVCP---------------IR------------- 519
G YG V IR
Sbjct: 421 GTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEK 480
Query: 520 --QLSDGQKCRVVFAYLAWQA----PHLLLLDEPTNHLDME 554
LS GQK R+ A +A P +LLLDE T+ LD E
Sbjct: 481 GVLLSGGQKQRIAIA----RALLKNPKILLLDEATSALDAE 517
Score = 50.3 bits (121), Expect = 1e-06
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 197 YDRLDDISADTAE----ARAANILHGLGFTKEMQQK-KTK------DFSGGWRMRIALAR 245
Y D S E A AN + F + Q T SGG + RIA+AR
Sbjct: 440 YGADDPSSVTAEEIQRVAEVANAV---AFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIAR 496
Query: 246 ALYVKPHLLLLDEPTNHLD 264
AL P +LLLDE T+ LD
Sbjct: 497 ALLKNPKILLLDEATSALD 515
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 54.1 bits (131), Expect = 2e-08
Identities = 53/226 (23%), Positives = 85/226 (37%), Gaps = 51/226 (22%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I V+N +F ++ P + F I +A+VG G GKS+LL+ + ++ G V
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 460 --------------KNSHLR----F------ARYHQHLHELLDLDISPLDYMLQSFPEVK 495
+N LR F Y + L L+ P
Sbjct: 64 IKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRS------VIQACALLPDLEILPS-G 116
Query: 496 DREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDMET 555
DR E IG G+ LS GQK RV A + + L D+P + +D
Sbjct: 117 DRTE----IGEKGVN----------LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 162
Query: 556 IDALADAINDFEGGL-----VLVSHDFRLINQVAEEIWICENGKVT 596
+ + + +G L +LV+H + Q + I + GK++
Sbjct: 163 GKHIFENVIGPKGMLKNKTRILVTHSMSYLPQ-VDVIIVMSGGKIS 207
Score = 49.1 bits (118), Expect = 1e-06
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVIIS 286
SGG + R++LARA+Y + L D+P + +D + + + LK RILV +
Sbjct: 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILV--T 186
Query: 287 HSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLENQMKQYNWEQDQ 338
HS +L II + K+ G+Y+ ++ Y
Sbjct: 187 HSMSYLP-QVDVIIVMSGGKISEM-GSYQELLARDGA-FAEFLRTYASHHHH 235
Score = 29.8 bits (68), Expect = 2.4
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLG 134
L + G ++G G GKS+LL A+L
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLA 53
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 6e-08
Identities = 97/585 (16%), Positives = 173/585 (29%), Gaps = 194/585 (33%)
Query: 122 NGSGKSTLLAVLGNREVPVPDHI------DIFHLTREMPASDKSALTCVMEVDEERVRLE 175
+GS + LL VP + F+ P ++ A DE E
Sbjct: 13 HGSLEHVLL-------VPTASFFIASQLQEQFNKILPEP-TEGFAAD-----DEPTTPAE 59
Query: 176 KLAEQL--VACEDDESQEQLMDIYDRLDDISADTAEA---RAANILHGLGFTKEMQQKKT 230
+ + L V+ + S+ +D++ ++ E +I H L + T
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQ---FDQVLNLCLTEFENCYLEGNDI-HALAAKLLQENDTT 115
Query: 231 KDFSGGW-----RMRIALARALYVKPH--LLLLDEPTNHLDLDAC--------VWLEE-- 273
+ RI R + K L + L A + EE
Sbjct: 116 LVKTKELIKNYITARIMAKRP-FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 274 EL-KTYKRILV-IISHSQDFLNGVCTNIIHLDKRKLKYYG-------------------- 311
+L +TY ++ +I S + L+ + LD K+ G
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRT--TLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 312 --------------GNYEAFCKTRLELLENQMKQYNWEQDQIAHMKNYIARFGHG----S 353
+Y K L +++ +++K GH +
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKL-LGFTPGELR---------SYLK---GATGHSQGLVT 279
Query: 354 AKLARQAQSKEKTLAKMVNQGLTDKVTTDKTVTF--------TFPSCGKIPPPVIMVQNV 405
A + S E + V + + TV F +P+ PP I+ ++
Sbjct: 280 AVAIAETDSWE-SFFVSVRKAI--------TVLFFIGVRCYEAYPNTS--LPPSILEDSL 328
Query: 406 SFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKST-LLNLIYGDLTPSV--GMVRK-N 461
N G + +L++ +LT V K N
Sbjct: 329 -----------------------------ENNEGVPSPMLSIS--NLTQEQVQDYVNKTN 357
Query: 462 SHLRFARYHQHLHELLDLDISPLDYMLQSFPE--VKDREEMRKIIGRYGLTGRQQVCPIR 519
SHL + + + L + ++ P+ +RK GL Q P
Sbjct: 358 SHLPAGK---QVE--ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD--QSRIPFS 410
Query: 520 QLSDGQKCRVVFAYLAWQAP-HLLLLDEPTNHL--DMETID------ALADAINDFEGGL 570
+ +K + +L +P H LL ++ + D+ + + + D G
Sbjct: 411 E----RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG- 465
Query: 571 VLVSHDFR-LINQVAEEI--WICENGKVTKWEGN-------ILDY 605
D R L ++E I I KWE ILD+
Sbjct: 466 ----SDLRVLSGSISERIVDCIIR--LPVKWETTTQFKATHILDF 504
Score = 32.3 bits (73), Expect = 0.67
Identities = 60/378 (15%), Positives = 110/378 (29%), Gaps = 141/378 (37%)
Query: 57 ALCRKLEAD-AKLNAEARACTG-------SLAV-HPKSRD--VKIANFSIT--FH-GCE- 101
+ L +L + + TG ++A+ S + +IT F G
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 102 ------------LLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLG--NREVPVPDHIDI- 146
+L+D+ LE N G +L ++ + + + N +P ++I
Sbjct: 311 YEAYPNTSLPPSILEDS-LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 147 -------FHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACEDDESQEQLMDIYDR 199
++ P L + L K Q
Sbjct: 370 LVNGAKNLVVSG--PPQSLYGL---------NLTLRK-----AKAPSGLDQ--------- 404
Query: 200 LDDISADTAEARAANILHGLGFTKEMQQKKTKDFSGGWR-MRIALARALYVKP-HLLLLD 257
+R ++K K FS R + +A P H LL
Sbjct: 405 ----------SRI-----------PFSERKLK-FS--NRFLPVAS-------PFHSHLLV 433
Query: 258 EPTNHLDLDA----CVWLEEELKTYKRILVIISHSQDFLNGVCTNIIHLDKRKLKYYGGN 313
++ ++ D + ++++ I V D +G D R L
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQ----IPVY-----DTFDGS-------DLRVLS----- 472
Query: 314 YEAFCKTRLELLENQM--KQYNWE---QDQIAHMKNYIARFGHGSA----KLARQAQSKE 364
+ E + + + WE Q + H I FG G A L ++K+
Sbjct: 473 -----GSISERIVDCIIRLPVKWETTTQFKATH----ILDFGPGGASGLGVLT--HRNKD 521
Query: 365 KTLAKMVNQGLTDKVTTD 382
T +++ G D D
Sbjct: 522 GTGVRVIVAGTLDINPDD 539
Score = 31.6 bits (71), Expect = 1.1
Identities = 33/199 (16%), Positives = 64/199 (32%), Gaps = 65/199 (32%)
Query: 444 LNLIYGDLTPSVGMVRKNSH-----LR--FARYHQHLHELLDLD---ISPLDYMLQSF-- 491
L L +G L + +V S L+ F + E D +P + ++ F
Sbjct: 9 LTLSHGSLEHVL-LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE-LVGKFLG 66
Query: 492 --------PEVKDREEMRKII-----GRYGLTGR------QQVCPIRQLSDGQKCRVVFA 532
+V +++ + Y L G ++ + + ++
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCY-LEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 533 YLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEIWICEN 592
Y+ A ++ P + ++ AL A+ + LV + F
Sbjct: 126 YI--TA--RIMAKRPFDK---KSNSALFRAVGEGNAQLVAI---F--------------G 161
Query: 593 GKVTKWEGNILDY-KETLR 610
G +GN DY +E LR
Sbjct: 162 G-----QGNTDDYFEE-LR 174
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 53.7 bits (130), Expect = 9e-08
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 15/101 (14%)
Query: 199 RLDDISADTAEARAANILH--GLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLL 256
R +L G+ E+ + + SGG + R ALARAL P L+LL
Sbjct: 106 GNGKGRTAQERQRIEAMLELTGIS---ELAGRYPHELSGGQQQRAALARALAPDPELILL 162
Query: 257 DEPTNHLDLDACVWLEEELKTYKRIL-------VIISHSQD 290
DEP + LD + E++ L V +SH ++
Sbjct: 163 DEPFSALDEQLRRQIREDM---IAALRANGKSAVFVSHDRE 200
Score = 52.6 bits (127), Expect = 2e-07
Identities = 51/223 (22%), Positives = 76/223 (34%), Gaps = 71/223 (31%)
Query: 398 PVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTR----LALVGPNGAGKSTLLNLIYGDLTP 453
+ + ++S + + L I L L ++G +G GK+TLL + G P
Sbjct: 3 AALHIGHLSKSFQN-----TPVLN-DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP 56
Query: 454 SVGMVRKNSHLRFARYHQHLHELLDLDISPLDYML-----------QS---FP------- 492
G + L I + L Q FP
Sbjct: 57 DSGEIS----------------LSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRN 100
Query: 493 -------------EVKDR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFA-YLAWQ 537
+ + R E M ++ G L GR +LS GQ+ R A LA
Sbjct: 101 IAYGLGNGKGRTAQERQRIEAMLELTGISELAGRY----PHELSGGQQQRAALARALAPD 156
Query: 538 APHLLLLDEPTNHLDMETIDALADAINDF--EGGL--VLVSHD 576
P L+LLDEP + LD + + + + G V VSHD
Sbjct: 157 -PELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198
Score = 29.8 bits (68), Expect = 2.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 88 VKIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL 130
+ I + S +F +L D L L+ G ++G +G GK+TLL
Sbjct: 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLL 47
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 52.2 bits (126), Expect = 2e-07
Identities = 39/165 (23%), Positives = 55/165 (33%), Gaps = 58/165 (35%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLD 478
+ L ++GP GAGK+ L LI G P G + L
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL----------------LDG 61
Query: 479 LDISPL------------DYMLQSFP-----------------EVKDR-EEMRKIIGRYG 508
D++ L +Y L FP + R + + +
Sbjct: 62 KDVTDLSPEKHDIAFVYQNYSL--FPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH 119
Query: 509 LTGRQQVCPIRQLSDGQKCRVVFA-YLAWQAPHLLLLDEPTNHLD 552
L R LS G++ RV A L P +LLLDEP + LD
Sbjct: 120 LLDRN----PLTLSGGEQQRVALARALVTN-PKILLLDEPLSALD 159
Score = 51.0 bits (123), Expect = 5e-07
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
SGG + R+ALARAL P +LLLDEP + LD
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDP 160
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 52.2 bits (126), Expect = 4e-07
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 403 QNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI 447
+NV F Y P + +++ F I ++ALVGP G+GK+T++NL+
Sbjct: 358 KNVWFSYDKKKPVL-KDITFHIKPGQKVALVGPTGSGKTTIVNLL 401
Score = 30.6 bits (70), Expect = 1.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLD 264
S G R +A+ RA P +L+LDE T+++D
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVD 523
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 49.8 bits (120), Expect = 9e-07
Identities = 55/266 (20%), Positives = 84/266 (31%), Gaps = 95/266 (35%)
Query: 390 PSCGKIPPPV---IMVQNVSFRY-SDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLN 445
S P + + Q+VSF Y + + + L F + ALVGPNG+GKST+
Sbjct: 4 LSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAA 63
Query: 446 LI---YGDLTPSVGMVRKNSHLRFARYHQHLHELLD-LDISPLDYMLQSFPEVKDREEMR 501
L+ Y P+ G V LLD + D +
Sbjct: 64 LLQNLY---QPTGGKV-----------------LLDGEPLVQY-----------DHHYLH 92
Query: 502 KIIG-----------------RYGLTG---RQQVCP----------IRQL---------- 521
+ YGLT +++ I
Sbjct: 93 TQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 522 -----SDGQKCRVVFAYLAWQAPHLLLLDEPTNHLDM--ETI--DALADAINDFEGGLVL 572
S GQ+ V A + P LL+LD T+ LD + L ++ VL
Sbjct: 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL-YESPEWASRTVL 211
Query: 573 V-SHDFRL--INQVAEEIWICENGKV 595
+ + +L + A I + G V
Sbjct: 212 LITQ--QLSLA-ERAHHILFLKEGSV 234
Score = 49.5 bits (119), Expect = 1e-06
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 22/107 (20%)
Query: 197 YDRLDDISAD--TAEARAANILHGLGFTKEMQQK-------KTKDFSGGWRMRIALARAL 247
Y + + TA A + H F Q SGG R +ALARAL
Sbjct: 115 YGLTRTPTMEEITAVAMESGA-HD--FISGFPQGYDTEVGETGNQLSGGQRQAVALARAL 171
Query: 248 YVKPHLLLLDEPTNHLDL-------DACVWLEEELKTYKRILVIISH 287
KP LL+LD T+ LD L E + R +++I+
Sbjct: 172 IRKPRLLILDNATSALDAGNQLRVQRL---LYESPEWASRTVLLITQ 215
Score = 29.8 bits (68), Expect = 2.4
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 103 LQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
LQ L G+ L+G NGSGKST+ A+L
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 50.1 bits (120), Expect = 1e-06
Identities = 46/206 (22%), Positives = 74/206 (35%), Gaps = 63/206 (30%)
Query: 390 PSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLN---- 445
PS G++ V++++ +Y++ G I N+ F I R+ L+G G+GKSTLL+
Sbjct: 15 PSGGQM-----TVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69
Query: 446 --------LIYGDLTPSVGMVRKNSHLRFARYHQHLHEL-LDLDISPLDYMLQS------ 490
I G S+ L + + P + S
Sbjct: 70 LLNTEGEIQIDGVSWDSIT----------------LEQWRKAFGVIPQKVFIFSGTFRKN 113
Query: 491 ---FPEVKDRE--------EMRKIIGRY--GLTGRQQVCPIRQ----LSDGQKCRVVFAY 533
D+E +R +I ++ L + LS G K + A
Sbjct: 114 LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLD-----FVLVDGGCVLSHGHKQLMCLAR 168
Query: 534 LAWQAPHLLLLDEPTNHLDMETIDAL 559
+LLLDEP+ HLD T +
Sbjct: 169 SVLSKAKILLLDEPSAHLDPVT-YQI 193
Score = 42.0 bits (99), Expect = 4e-04
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 265
S G + + LAR++ K +LLLDEP+ HLD
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 188
Score = 28.1 bits (63), Expect = 9.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 83 PKSRDVKIANFSITFH-GCEL-LQDTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
P + + + + + G L++ ++ G+R GLLG GSGKSTLL+
Sbjct: 15 PSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAF 67
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 47.0 bits (112), Expect = 2e-06
Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 187 DESQEQLMDIYDRLDDISADTAEARAANILH--GLGFTKEMQQKKTKDFSGGWRMRIALA 244
+ E +I+ + RA + + + + SGG R+ + LA
Sbjct: 12 SKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTF--LSGGERIALGLA 69
Query: 245 ------RALYVKPHLLLLDEPTNHLDLDACVWLEEELKTYKRI---LVIISHSQDF 291
L + LL+LDEPT +LD + L ++ Y + ++++SH ++
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 125
Score = 40.1 bits (94), Expect = 5e-04
Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 13/126 (10%)
Query: 468 RYHQHL-HELLDLDISPLDYMLQSFPEVKDREEMRKIIG---RYGLTGRQQVCPIRQLSD 523
+Y L + F E K E + + R + + P+ LS
Sbjct: 1 KYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSG 60
Query: 524 GQKCRVVFAY------LAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG---LVLVS 574
G++ + A+ LL+LDEPT +LD E L + + ++LVS
Sbjct: 61 GERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120
Query: 575 HDFRLI 580
HD L
Sbjct: 121 HDEELK 126
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 49.2 bits (118), Expect = 2e-06
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 194 MDIYD------RLDDISADTAEAR---AANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244
+ ++ +S + R A IL + ++ SG + R+ALA
Sbjct: 97 LTAFENIAFPLTNMKMSKEEIRKRVEEVAKILD----IHHVLNHFPRELSGAQQQRVALA 152
Query: 245 RALYVKPHLLLLDEPTNHLD 264
RAL P LLLLDEP ++LD
Sbjct: 153 RALVKDPSLLLLDEPFSNLD 172
Score = 40.3 bits (95), Expect = 0.001
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 40/181 (22%)
Query: 400 IMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVR 459
I+V+NVS + N+ I+ R ++GP+GAGK+T + +I G PS G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 460 KNSHLRFARYHQHLHELLDLDISPLD---------YML---------QSFP--------- 492
+ L + L + P D + L +FP
Sbjct: 64 FDDRL--------VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE 115
Query: 493 EVKDR-EEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDEPTNHL 551
E++ R EE+ KI+ + + P R+LS Q+ RV A + P LLLLDEP ++L
Sbjct: 116 EIRKRVEEVAKILDIHHVLNHF---P-RELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 552 D 552
D
Sbjct: 172 D 172
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 48.7 bits (117), Expect = 4e-06
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 403 QNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI 447
+NV FRY ++ + + F + + +A++G G+GKSTL+NLI
Sbjct: 345 ENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI 389
Score = 41.0 bits (97), Expect = 0.001
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDL--DACVW--LEEELKTYKRILVIIS 286
FSGG + R+++ARAL KP +L+LD+ T+ +D + + L+ K II+
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK--GCTTFIIT 535
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 47.1 bits (113), Expect = 5e-06
Identities = 42/167 (25%), Positives = 63/167 (37%), Gaps = 64/167 (38%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYGDLTPSVGMVR--------KNSHLRFAR-- 468
GIDL + L+G NGAGK+T L+ I G + G + K +H+
Sbjct: 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83
Query: 469 -----------------------YHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIG 505
Y++ E + D L+++ FP +K+R K +G
Sbjct: 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD---LEWIFSLFPRLKER---LKQLG 137
Query: 506 RY--GLTGRQQVCPI-RQL-SDGQKCRVVFAYLAWQAPHLLLLDEPT 548
G G QQ+ I R L S P LL++DEP+
Sbjct: 138 GTLSG--GEQQMLAIGRALMSR---------------PKLLMMDEPS 167
Score = 37.0 bits (87), Expect = 0.009
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPT 260
SGG + +A+ RAL +P LL++DEP+
Sbjct: 141 SGGEQQMLAIGRALMSRPKLLMMDEPS 167
Score = 32.0 bits (74), Expect = 0.45
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLL-AVLG 134
++ + + + ++ L++ G+ L+G NG+GK+T L A+ G
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 47.0 bits (112), Expect = 8e-06
Identities = 56/241 (23%), Positives = 91/241 (37%), Gaps = 63/241 (26%)
Query: 390 PSCGKIPPPVIMVQNVSFR-YSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLLNLIY 448
++SF +S G + +++ F I+ LA+ G GAGK++LL +I
Sbjct: 26 KQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 85
Query: 449 GDLTPSVGMVRKNSHLRFA-----------------------RYHQHLHE-LLDLDISPL 484
G+L PS G ++ + + F RY + L+ D
Sbjct: 86 GELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEED---- 141
Query: 485 DYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLL 544
+ F E KD +G G+T LS GQ+ R+ A ++ L LL
Sbjct: 142 ---ISKFAE-KDNIV----LGEGGIT----------LSGGQRARISLARAVYKDADLYLL 183
Query: 545 DEPTNHLDMETIDALADAINDFE---GGL------VLVSHDFRLINQVAEEIWICENGKV 595
D P +LD+ T + FE L +LV+ + + A++I I G
Sbjct: 184 DSPFGYLDVLTEKEI------FESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSS 236
Query: 596 T 596
Sbjct: 237 Y 237
Score = 45.4 bits (108), Expect = 3e-05
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 234 SGGWRMRIALARALYVKPHLLLLDEPTNHLD-------LDACVWLEEELKTYKRILVIIS 286
SGG R RI+LARA+Y L LLD P +LD ++CV + + RILV +
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV--CKLMANKTRILV--T 216
Query: 287 HSQDFLNGVCTNIIHLDKRKLKYYGGNYEAFCKTRLELLE 326
+ L I+ L + +Y G + R +
Sbjct: 217 SKMEHLKK-ADKILILHEGSSYFY-GTFSELQNLRPDFSS 254
Score = 35.8 bits (83), Expect = 0.037
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 63 EADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELLQDTMLELNCGRRYGLLGLN 122
E +L +A+ + + +NFS G +L+D ++ G+ + G
Sbjct: 16 EGFGELFEKAKQNNNNRKTSNGDDSLSFSNFS--LLGTPVLKDINFKIERGQLLAVAGST 73
Query: 123 GSGKSTLL-AVLG 134
G+GK++LL ++G
Sbjct: 74 GAGKTSLLMMIMG 86
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 46.8 bits (111), Expect = 1e-05
Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 14/140 (10%)
Query: 166 EVDEERVRLEKLAEQLVACEDDES--QEQLMDIYDRLDDISADTAEARAANILHGLGFTK 223
++ + L+K+ ++ + I L++ ++ + L +
Sbjct: 209 KLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVR 268
Query: 224 EMQQKKTKD---FSGGWRMRIALARAL-------YVKPHLLLLDEPTNHLDLDACVWLEE 273
SGG ++ +AL+ L + ++LDEPT +LD + L E
Sbjct: 269 VHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAE 328
Query: 274 ELKTYKRI--LVIISHSQDF 291
+ K I ++II+H ++
Sbjct: 329 IFRKVKSIPQMIIITHHREL 348
Score = 44.1 bits (104), Expect = 8e-05
Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 10/149 (6%)
Query: 460 KNSHLRFARYHQHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIR 519
+ R + + L L+ F E+ K + V I
Sbjct: 221 RRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVR-VHAPNGVLTID 279
Query: 520 QLSDGQKCRVVFA-------YLAWQAPHLLLLDEPTNHLDMETIDALADAINDFEGG--L 570
LS G++ V + L ++LDEPT +LD LA+ + +
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 571 VLVSHDFRLINQVAEEIWICENGKVTKWE 599
++++H L + I + ++G V+K +
Sbjct: 340 IIITHHRELEDVADVIINVKKDGNVSKVK 368
Score = 35.2 bits (81), Expect = 0.061
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 417 YRNLEFGIDLDTRL-ALVGPNGAGKSTLL 444
+ N I + + A++G NG+GKS++
Sbjct: 16 HVNSR--IKFEKGIVAIIGENGSGKSSIF 42
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 44.9 bits (107), Expect = 5e-05
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 194 MDIYD------RLDDISADTAEAR---AANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244
M +Y L + + + A +L + ++ + SGG + R+A+A
Sbjct: 90 MTVYKNIAFPLELRKAPREEIDKKVREVAKML-HID---KLLNRYPWQLSGGQQQRVAIA 145
Query: 245 RALYVKPHLLLLDEPTNHLD 264
RAL +P +LLLDEP ++LD
Sbjct: 146 RALVKEPEVLLLDEPLSNLD 165
Score = 37.6 bits (88), Expect = 0.010
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYG 449
I+L + +AL+GP+G+GKSTLL I G
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAG 51
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 44.1 bits (105), Expect = 1e-04
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 194 MDIYD------RLDDISADTAEAR---AANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244
M +Y+ ++ D + R AA +L + E+ + SGG R R+A+A
Sbjct: 98 MTVYENIAFPLKIKKFPKDEIDKRVRWAAELL-QIE---ELLNRYPAQLSGGQRQRVAVA 153
Query: 245 RALYVKPHLLLLDEPTNHLD 264
RA+ V+P +LL+DEP ++LD
Sbjct: 154 RAIVVEPDVLLMDEPLSNLD 173
Score = 36.8 bits (86), Expect = 0.017
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYG 449
++L + L L+GP+G GK+T L +I G
Sbjct: 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 59
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 43.4 bits (103), Expect = 1e-04
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 194 MDIYD------RLDDISADTAEAR---AANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244
M +YD +L + + R A +L GL E+ +K ++ SGG R R+AL
Sbjct: 96 MTVYDNIAFPLKLRKVPRQEIDQRVREVAELL-GLT---ELLNRKPRELSGGQRQRVALG 151
Query: 245 RALYVKPHLLLLDEPTNHLD 264
RA+ KP + L+DEP ++LD
Sbjct: 152 RAIVRKPQVFLMDEPLSNLD 171
Score = 37.2 bits (87), Expect = 0.014
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYG 449
+ L+ + + L+GP+G GK+T L +I G
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAG 51
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 43.4 bits (103), Expect = 2e-04
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 194 MDIYD------RLDDISADTAEAR---AANILHGLGFTKEMQQKKTKDFSGGWRMRIALA 244
M +++ R IS D E R A L + + +K SGG + R+ALA
Sbjct: 90 MTVFENIAFPLRARRISKDEVEKRVVEIARKL-LID---NLLDRKPTQLSGGQQQRVALA 145
Query: 245 RALYVKPHLLLLDEPTNHLD 264
RAL +P +LL DEP ++LD
Sbjct: 146 RALVKQPKVLLFDEPLSNLD 165
Score = 37.6 bits (88), Expect = 0.011
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYG 449
G+ + + +AL+GP+G GK+T L ++ G
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAG 51
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 39.5 bits (92), Expect = 0.003
Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 27/124 (21%)
Query: 173 RLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQKKTKD 232
+ K + + + + ++ I D R A L
Sbjct: 238 AVLKRTKAYLD-ILTNGRFDIDFDDEKGGFIIKDWGIERPARGL---------------- 280
Query: 233 FSGGWRMRIALARAL----YVKPHL--LLLDEPTNHLD---LDACVWLEEELKTYKRILV 283
SGG R I+++ A+ L +DE + LD + + +EL+ +++V
Sbjct: 281 -SGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
Query: 284 IISH 287
I+H
Sbjct: 340 FITH 343
Score = 36.4 bits (84), Expect = 0.024
Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 13/115 (11%)
Query: 471 QHLHELLDLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVV 530
+ L +L + LD + ++ +E I + R P R LS G++ +
Sbjct: 234 RVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGFIIKDWGIER----PARGLSGGERALIS 289
Query: 531 FAY-LAW----QAP-HLLLLDEPTNHLDMETIDALADAINDFEGG---LVLVSHD 576
+ ++ +DE + LD E + +A + + E +V ++HD
Sbjct: 290 ISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHD 344
Score = 36.4 bits (84), Expect = 0.025
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 417 YRNLEFGIDLDTRL-ALVGPNGAGKSTLLNLI----YGDLTPSVGMVRKNSHLR 465
+N++ I+ + + + GPNGAGKS+L I +G+ ++
Sbjct: 14 LKNVD--IEFQSGITVVEGPNGAGKSSLFEAISFALFGN-GI--RYPNSYDYVN 62
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 37.0 bits (86), Expect = 0.006
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 417 YRNLEFGIDLDTRLAL-VGPNGAGKSTLLNLIY 448
+ + ++ + L +G NG+GKS+LL+ I
Sbjct: 14 HSDTV--VEFKEGINLIIGQNGSGKSSLLDAIL 44
Score = 27.7 bits (62), Expect = 6.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 117 GLLGLNGSGKSTLL 130
++G NGSGKS+LL
Sbjct: 27 LIIGQNGSGKSSLL 40
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 37.5 bits (88), Expect = 0.008
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 423 GIDLDTRL----ALVGPNGAGKSTLLNLIYG 449
G++L AL+GPNGAGKSTL ++ G
Sbjct: 21 GVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51
Score = 36.3 bits (85), Expect = 0.017
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137
+I + + G +L+ L + G + L+G NG+GKSTL +L
Sbjct: 5 EIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP 53
Score = 28.6 bits (65), Expect = 5.2
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 233 FSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEE---ELKTYKRILVIISHSQ 289
FSGG + R + + L ++P +LDE + LD+DA + ++ ++I+H Q
Sbjct: 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203
Query: 290 DFLN 293
LN
Sbjct: 204 RILN 207
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 37.5 bits (88), Expect = 0.009
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 423 GIDLDTRL----ALVGPNGAGKSTLLNLIYG 449
G+ LD A++GPNG+GKSTL + G
Sbjct: 38 GLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68
Score = 35.6 bits (83), Expect = 0.038
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 89 KIANFSITFHGCELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNRE 137
I + ++ +L+ L+++ G + ++G NGSGKSTL A L RE
Sbjct: 22 SIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning;
2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 37.1 bits (85), Expect = 0.010
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462
+ F +D + L G NGAGKST + L P + ++ +
Sbjct: 18 FFARTFDLD-ELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 36.5 bits (85), Expect = 0.011
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 417 YRNLEFGIDLDTRLAL-VGPNGAGKSTLL 444
+ + ++ + L +G NG+GKS+LL
Sbjct: 14 HSDTV--VEFKEGINLIIGQNGSGKSSLL 40
Score = 28.0 bits (63), Expect = 8.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 116 YGLLGLNGSGKSTLL 130
++G NGSGKS+LL
Sbjct: 26 NLIIGQNGSGKSSLL 40
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 36.8 bits (86), Expect = 0.015
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 16/84 (19%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----RFARYHQHLHE--LLD----- 478
G +G GKS+LLN I +L + ++ R H + D
Sbjct: 177 VFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI-HTSGGLVADTPGFS 235
Query: 479 -LDISPLDY--MLQSFPEVKDREE 499
L+ + ++ + +FP+++++
Sbjct: 236 SLEFTDIEEEELGYTFPDIREKSS 259
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 36.8 bits (86), Expect = 0.019
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 423 GIDLDTR----LALVGPNGAGKSTLLNLIYG 449
I+LD + VGP+G GKSTLL +I G
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51
Score = 36.8 bits (86), Expect = 0.019
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 210 ARAANILHGLGFTKEMQQKKTKDFSGGWRMRIALARALYVKPHLLLLDEP-TNHLDLDA 267
+ A +L L + +K K SGG R R+A+ R L +P + LLDEP +N LDA
Sbjct: 115 NQVAEVL-QLA---HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN---LDA 166
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 36.4 bits (85), Expect = 0.021
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 12/55 (21%)
Query: 431 ALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHL-----RFARYHQHLHELLDLD 480
+ G +G GKS+LLN I L V V + A +LL D
Sbjct: 173 TMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTA-------QLLKFD 220
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 36.0 bits (82), Expect = 0.034
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 417 YRNLEFGIDLDTRLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNS 462
+ F D + L G NGAGKST + L P + ++ +
Sbjct: 20 FFARTFDFD-ELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 35.2 bits (82), Expect = 0.055
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 431 ALVGPNGAGKSTLLNLIYGD 450
L GP+G GKS++L+ + G+
Sbjct: 169 ILAGPSGVGKSSILSRLTGE 188
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 34.9 bits (81), Expect = 0.063
Identities = 13/56 (23%), Positives = 16/56 (28%), Gaps = 13/56 (23%)
Query: 431 ALVGPNGAGKSTLLNLIY-GDLTPSVGMVRKNSHL-----RFARYHQHLHELLDLD 480
G +G GKS+LLN + V S L A L
Sbjct: 219 IFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAA-------RLYHFP 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 33.5 bits (77), Expect = 0.093
Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 27/117 (23%)
Query: 428 TRLALVGPNGAGKSTL---------LNLIYGD-LTPSVGMVRKNSHLRFARYHQHLHELL 477
T + L GP+ KST+ +I G + K +H ++L
Sbjct: 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGNEK--------LFEHFNKLA 53
Query: 478 DLDISPLDYMLQSFPEVKDREEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYL 534
D D +D + S + +K LT RQ +R + D K + YL
Sbjct: 54 DEDNVIIDRFVYS-----NLVYAKKFKDYSILTERQ----LRFIEDKIKAKAKVVYL 101
Score = 28.5 bits (64), Expect = 4.6
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 10/72 (13%)
Query: 118 LLGLNGSGKSTLLAVLGNR-EVPVPDHIDIFHLTR---EMPASDKSALTCVMEVDEERVR 173
L G + KST+ A L + P+ F L + E + L DE+ V
Sbjct: 6 LEGPDCCFKSTVAAKLSKELKYPIIK-GSSFELAKSGNEKLFEHFNKLA-----DEDNVI 59
Query: 174 LEKLAEQLVACE 185
+++ +
Sbjct: 60 IDRFVYSNLVYA 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 33.1 bits (75), Expect = 0.14
Identities = 22/162 (13%), Positives = 50/162 (30%), Gaps = 17/162 (10%)
Query: 429 RLALVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYML 488
++ + G G GK+TL+ I L + ++ +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGK------ 55
Query: 489 QSFPEVKDREEMRKIIGRYGL-TGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLLLLDE- 546
+K++G YG+ + I L + ++++DE
Sbjct: 56 -KKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYRE------AKKDRRKVIIIDEI 108
Query: 547 -PTNHLDMETIDALADAINDFEGGLVLVSHDFRLINQVAEEI 587
+ D + ++D +V R ++ + +EI
Sbjct: 109 GKMELFSKKFRDLVRQIMHDPNVNVVATIPI-RDVHPLVKEI 149
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 34.0 bits (79), Expect = 0.14
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 429 RLALVG-PNGAGKSTLLNLIYG 449
++A+VG PN GKSTL N I
Sbjct: 182 KVAIVGRPN-VGKSTLFNAILN 202
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 34.1 bits (79), Expect = 0.14
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 417 YRNLE-FGIDLDTRL-ALVGPNGAGKSTLLNLIY 448
YRNL ++ + + G NGAGK+ LL Y
Sbjct: 14 YRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAY 47
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.14
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
Query: 48 EPEEISPEEALCRKLEADAKLNAEARACTGSLAVH 82
E + + +KL+A KL A+ A +LA+
Sbjct: 18 EKQAL-------KKLQASLKLYADDSA--PALAIK 43
Score = 29.9 bits (66), Expect = 1.2
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 19/45 (42%)
Query: 170 ERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAAN 214
E+ L+KL ++ + +Y + D+A A A
Sbjct: 18 EKQALKKL----------QAS---LKLY------ADDSAPALAIK 43
Score = 29.1 bits (64), Expect = 2.8
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 18/44 (40%)
Query: 319 KTRLELLENQMKQYNWEQDQIAHMKNYIARFGHGSA-KLARQAQ 361
K L+ L+ +K Y D SA LA +A
Sbjct: 19 KQALKKLQASLKLY--ADD---------------SAPALAIKAT 45
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 33.8 bits (77), Expect = 0.14
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 429 RLALVGPNGAGKSTLLNLIYGD 450
+ ++G G GKS+ +N I G+
Sbjct: 41 TILVMGKGGVGKSSTVNSIIGE 62
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 33.3 bits (75), Expect = 0.16
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLD 480
L G +GAGK+T+ + + +V + F H H EL
Sbjct: 37 LGGQSGAGKTTIHRIKQKEFQG--NIVIIDGD-SFRSQHPHYLELQQEY 82
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 33.6 bits (78), Expect = 0.18
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 429 RLALVG-PNGAGKSTLLNLIYG 449
+ L+G PN GKS+L+N + G
Sbjct: 177 QFCLIGRPN-VGKSSLVNAMLG 197
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 33.4 bits (76), Expect = 0.18
Identities = 21/164 (12%), Positives = 39/164 (23%), Gaps = 17/164 (10%)
Query: 326 ENQMKQYNWEQDQIAHMK-NYIARFGHGSAKLARQAQSKEKTLAKMVNQGLTDKVTTDKT 384
E Q Q + I+ + + A + S KT + G
Sbjct: 16 EKQWIQEDQAS-YISFNAASNSRSQIKAALDNAGKIMSLTKTAPDYL-VGQQPVEDISSN 73
Query: 385 VTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGIDLDTRLALVGPNGAGKSTLL 444
+ + + +Y+ + L GP GK+ +
Sbjct: 74 RIYKI----------LELNGYDPQYA--ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121
Query: 445 NLIYGDLTPSVGMV-RKNSHLRFARYHQHLHELLDLDISPLDYM 487
I P G V N + F + + +
Sbjct: 122 EAIAH-TVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVV 164
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 32.8 bits (75), Expect = 0.19
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 415 WIYRNLEFGI----DLDTRLALVGPNGAGKSTLLN-LIYGDLTPSV 455
WI L G + + GP +GK++LL L + P+V
Sbjct: 32 WIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV 77
Score = 31.6 bits (72), Expect = 0.54
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 118 LLGLNGSGKSTLLAVLGNREVP 139
+ G SGK++LL +L V
Sbjct: 53 IAGPQNSGKTSLLTLLTTDSVR 74
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 32.7 bits (74), Expect = 0.26
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 427 DTRLALVGPNGAGKSTLLNLIYGD 450
R+ LVG GAGKS N I G
Sbjct: 29 QLRIVLVGKTGAGKSATGNSILGR 52
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 32.4 bits (74), Expect = 0.31
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 404 NVSFRYS-DDGPWIYRNLEFGIDLDTR-LALVG-PNGAGKSTLLNLI 447
+ +S ++ L I+ + + L G PN GKS+ +N++
Sbjct: 5 HHHHHHSSGRENLYFQGLP-SINPHKKTIILSGAPN-VGKSSFMNIV 49
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 32.4 bits (73), Expect = 0.33
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 18/99 (18%)
Query: 123 GSGKSTLLAVLG-----NREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVR---- 173
GSGK+TL G N +V + P+ D V E+ E
Sbjct: 24 GSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGA 83
Query: 174 ----LEKLAEQLVACEDDESQEQLMDIYDRLDDISADTA 208
++L E+ +E +++ + D + DT
Sbjct: 84 IVESYDRLMEKF-----NEYLNKILRLEKENDYVLIDTP 117
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 32.0 bits (73), Expect = 0.37
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 429 RLALVGPNGAGKSTLLN-LIYGDLTPSV 455
+ + GP +GK++LL L + P+V
Sbjct: 14 SIIIAGPQNSGKTSLLTLLTTDSVRPTV 41
Score = 30.9 bits (70), Expect = 0.94
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 118 LLGLNGSGKSTLLAVLGNREVP 139
+ G SGK++LL +L V
Sbjct: 17 IAGPQNSGKTSLLTLLTTDSVR 38
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 32.5 bits (74), Expect = 0.37
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 429 RLALVGPNGAGKSTLLNLIYG 449
+ ++G G GKS+ +N + G
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIG 58
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 31.9 bits (72), Expect = 0.41
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 429 RLALVGPNGAGKSTLLNLIYGDLTP 453
R+ L+G +GKS++ +++ ++P
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHKMSP 46
Score = 29.9 bits (67), Expect = 1.7
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 18/90 (20%)
Query: 118 LLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKL 177
L+GL SGKS++ V +FH +M ++ L ++ ++ +
Sbjct: 25 LMGLRRSGKSSIQKV-------------VFH---KMSPNETLFLESTNKIYKDDISNSSF 68
Query: 178 AEQLVACEDDESQEQLMDIYDRLDDISADT 207
D Q D + I T
Sbjct: 69 VN--FQIWDFPGQMDFFDPTFDYEMIFRGT 96
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 32.0 bits (74), Expect = 0.48
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 431 ALVG-PNGAGKSTLLNLIYG 449
A+VG PN GKSTLLN + G
Sbjct: 12 AIVGRPN-VGKSTLLNKLLG 30
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 32.0 bits (74), Expect = 0.49
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 431 ALVG-PNGAGKSTLLNLIYG 449
A+VG PN GKSTLLN + G
Sbjct: 11 AIVGKPN-VGKSTLLNNLLG 29
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 32.1 bits (74), Expect = 0.52
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 431 ALVG-PNGAGKSTLLNLIYG 449
A+VG PN GKSTLLN + G
Sbjct: 14 AIVGKPN-VGKSTLLNNLLG 32
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 31.6 bits (72), Expect = 0.58
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 429 RLALVGPNGAGKSTLLN-LIYGDL---TPSVG 456
+ VG +GK+ L L+ G S+
Sbjct: 9 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT 40
Score = 29.7 bits (67), Expect = 2.0
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 118 LLGLNGSGKSTLLAVLGNREVP 139
+GL SGK+ L L +
Sbjct: 12 FVGLCDSGKTLLFVRLLTGQYR 33
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase;
HET: DNA; 2.40A {Neisseria gonorrhoeae}
Length = 220
Score = 31.0 bits (71), Expect = 0.74
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 170 ERVRLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKE 224
ERV EK+ Q + +SQ L+ + A L G G
Sbjct: 59 ERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEECAALADHAE-TLAGFGLELS 112
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 31.9 bits (71), Expect = 0.75
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 429 RLALVGPNGAGKSTLLNLIYGD 450
RL ++G GKST LN + G+
Sbjct: 71 RLLVLGDMKRGKSTFLNALIGE 92
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein,
mostly mixed alpha-beta structures, one domain is
entirely helical; HET: DNA; 2.20A {Thermus aquaticus}
SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A*
1fw6_A* 1ewr_A*
Length = 765
Score = 31.7 bits (73), Expect = 0.94
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 424 IDLDTRLALV-GPNGAGKSTLL 444
+++ L L+ GPN AGKST L
Sbjct: 572 LEMAHELVLITGPNMAGKSTFL 593
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 31.1 bits (71), Expect = 0.97
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 105 DTMLELNCGRRYGLLGLNGSGKSTLLAVL 133
D +L G+R G+ +G GKSTLL ++
Sbjct: 63 DGLLTCGIGQRIGIFAGSGVGKSTLLGMI 91
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 31.4 bits (72), Expect = 1.0
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 13/48 (27%)
Query: 431 ALVG-PNGAGKSTLLNLI------YGD-----LTPSVGMVRKNSHLRF 466
LVG PN AGKS+LL + L+P++G+V + RF
Sbjct: 161 GLVGYPN-AGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERF 207
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural
genomics, joint center for structural genomics, JCSG;
1.93A {Bacteroides thetaiotaomicron}
Length = 227
Score = 30.7 bits (69), Expect = 1.1
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 21/107 (19%)
Query: 132 VLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKLAEQLVACED--DES 189
V+ N ++ L E + A+ + + L QL E+ D+
Sbjct: 118 VIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRKNPKPLRDYCTQLHDIENQADDV 177
Query: 190 QEQLM-----------------DIYDRLDDISADTAEARAANILHGL 219
E + +I L+ D AE IL L
Sbjct: 178 YELFITKLFEEEKDCIELIKIKEIMHELEKT-TDAAE-HVGKILKNL 222
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 31.0 bits (71), Expect = 1.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 13/47 (27%)
Query: 432 LVG-PNGAGKSTLLNLI------YGD-----LTPSVGMVRKNSHLRF 466
LVG P+ GKSTLL+++ D L P++GMV + F
Sbjct: 163 LVGFPS-VGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSF 208
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 30.9 bits (71), Expect = 1.2
Identities = 11/18 (61%), Positives = 15/18 (83%), Gaps = 2/18 (11%)
Query: 429 RLALVG-PNGAGKSTLLN 445
++A+VG PN GKS+LLN
Sbjct: 226 KVAIVGRPN-VGKSSLLN 242
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 30.4 bits (68), Expect = 1.2
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 118 LLGLNGSGKSTLLAVLGNREVPVPDHIDIFHL-TREMPASDKSALTCVMEVDEERVRLEK 176
L+G++GSGKS + + + ++ D H + L + +
Sbjct: 13 LMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDA 72
Query: 177 LAEQLVACE 185
+
Sbjct: 73 AFAMQRTNK 81
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 30.7 bits (69), Expect = 1.3
Identities = 8/25 (32%), Positives = 19/25 (76%)
Query: 429 RLALVGPNGAGKSTLLNLIYGDLTP 453
+L L+G +G+GKS++ ++I+ + +
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSA 29
Score = 30.3 bits (68), Expect = 1.8
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 18/84 (21%)
Query: 118 LLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKL 177
L+G +GSGKS++ ++ IF A D L ++V+ +R
Sbjct: 8 LMGRSGSGKSSMRSI-------------IFS---NYSAFDTRRLGATIDVEHSHLRFLGN 51
Query: 178 AEQLVACEDDESQEQLMDIYDRLD 201
+ D Q+ M+ Y
Sbjct: 52 MTLNLW--DCGGQDVFMENYFTKQ 73
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 30.5 bits (69), Expect = 1.3
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 108 LELNCGRRY--GLLGLNGSGKSTL---LAVLGNREVPVPDHI--DIFHLTRE 152
L+ R L G GSGKSTL LA + + + + D FHL
Sbjct: 15 LDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNR 66
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 29.8 bits (68), Expect = 1.4
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
Query: 429 RLALVG-PNGAGKSTLLN 445
++ + G PN AGKS+LLN
Sbjct: 6 KVVIAGRPN-AGKSSLLN 22
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 31.0 bits (71), Expect = 1.4
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
Query: 429 RLALVG-PNGAGKSTLLN 445
+ G PN AGKSTLLN
Sbjct: 235 STVIAGKPN-AGKSTLLN 251
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 30.8 bits (69), Expect = 1.4
Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 20/91 (21%)
Query: 118 LLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVRLEKL 177
L+G+ GKS++ V +FH M D L E
Sbjct: 4 LMGVRRCGKSSICKV-------------VFH---NMQPLDTLYLESTSNPSLEHFS---- 43
Query: 178 AEQLVACEDDESQEQLMDIYDRLDDISADTA 208
+A + Q + + +
Sbjct: 44 TLIDLAVMELPGQLNYFEPSYDSERLFKSVG 74
Score = 29.6 bits (66), Expect = 2.9
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPS 454
L+G GKS++ +++ ++ P
Sbjct: 4 LMGVRRCGKSSICKVVFHNMQPL 26
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 30.6 bits (70), Expect = 1.6
Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
Query: 429 RLALVG-PNGAGKSTLLN 445
R+ +VG PN GKSTLLN
Sbjct: 245 RMVIVGKPN-VGKSTLLN 261
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 30.5 bits (68), Expect = 1.7
Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 16/142 (11%)
Query: 432 LVGPNGAGKSTLLNLIYG-DLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYMLQS 490
+VG +G GKSTL+N ++ DL P + + + ++ L +
Sbjct: 23 VVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVD 82
Query: 491 FPEVKD--------REEMRKIIGRYGLTGRQQVCPIRQLSDGQKCRVVFAYLAWQAPHLL 542
P D + + I ++ + R+ + F Y H L
Sbjct: 83 TPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCF-YFISPFGHGL 141
Query: 543 LLDEPTNHLDMETIDALADAIN 564
LD+ + A+ + +N
Sbjct: 142 ------KPLDVAFMKAIHNKVN 157
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 30.4 bits (69), Expect = 1.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 105 DTMLELNCGRRYGLLGLNGSGKSTLLA 131
+ +L + G+R GL +G GKS LL
Sbjct: 149 NALLTVGRGQRMGLFAGSGVGKSVLLG 175
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 29.5 bits (67), Expect = 2.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 118 LLGLNGSGKSTLLAVLGNREVPV 140
L+GL SGK+T + V+ + +
Sbjct: 27 LVGLQYSGKTTFVNVIASGQFNE 49
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 30.1 bits (67), Expect = 2.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 429 RLALVGPNGAGKSTLLNLIYG 449
+A+ G G+GKS+ +N + G
Sbjct: 71 NVAVTGETGSGKSSFINTLRG 91
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 2.3
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 169 EERVRLEKLAEQLVACED---DESQEQLMDIYDRLDD-ISADTAEARAANILHGLGFTKE 224
E+R RL++L E +++++ L + R + + + R A+ K
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD--------KA 144
Query: 225 MQQKKTKD 232
Q+ D
Sbjct: 145 FYQQPDAD 152
Score = 27.8 bits (61), Expect = 9.5
Identities = 10/73 (13%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 3 SDAKKKQQQKKKEQAKGRGAAAPKKPT---TSATNDVK------PEQITNGVKQEPEEIS 53
++ +K +++++++ + AA+ A D++ EQ+
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA-- 141
Query: 54 PEEALCRKLEADA 66
++A ++ +AD
Sbjct: 142 -DKAFYQQPDADI 153
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 30.0 bits (68), Expect = 2.5
Identities = 8/17 (47%), Positives = 14/17 (82%), Gaps = 3/17 (17%)
Query: 431 ALVGPNGAGKSTLLNLI 447
+++GPNG+GKS N++
Sbjct: 30 SIIGPNGSGKS---NMM 43
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 29.7 bits (66), Expect = 2.5
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 427 DTRLALVGPNGAGKSTLLNLIYG 449
RL LVG GAGKS N I G
Sbjct: 21 TRRLILVGRTGAGKSATGNSILG 43
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 30.0 bits (68), Expect = 2.8
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 431 ALVG-PNGAGKSTLLNLIYG 449
+ G N GKS+ +N + G
Sbjct: 38 VVAGRRN-VGKSSFMNALVG 56
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 29.5 bits (67), Expect = 3.1
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 429 RLALVGPNGAGKSTLLNLI 447
+ +VG +GK++L N +
Sbjct: 181 SIGIVGYTNSGKTSLFNSL 199
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 29.3 bits (65), Expect = 3.1
Identities = 21/115 (18%), Positives = 33/115 (28%), Gaps = 24/115 (20%)
Query: 113 GRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERV 172
G L G GSGKST+ L N H D+
Sbjct: 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFH---------------------SDDLWG 47
Query: 173 RLEKLAEQLVACEDDESQEQLMDIYDRLDDISADTAEARAANILHGLGFTKEMQQ 227
++ + +S +Q I D++ A+ IL G+ +
Sbjct: 48 YIKHGR---IDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPA 99
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 29.3 bits (65), Expect = 3.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 427 DTRLALVGPNGAGKSTLLNLIYG 449
+ R+ LVG G GKS N I
Sbjct: 22 ELRIILVGKTGTGKSAAGNSILR 44
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 29.2 bits (65), Expect = 3.8
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 431 ALVGPNGAGKSTLLNL---IYGDLTPSVGMVRKNSHLRFARYHQHLHELLDLDISPLDYM 487
++ G +GAG ST+ + I+ + ++ RF R EL +
Sbjct: 9 SVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKA-ELDRRYAAGDATF 67
Query: 488 LQSFPEVKDREEMRKIIGRYGLTGRQQV 515
E + +E+ ++ YG TG+ +
Sbjct: 68 SHFSYEANELKELERVFREYGETGQGRT 95
>3kta_A Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xex_A* 1xew_X*
Length = 182
Score = 28.7 bits (65), Expect = 4.1
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 431 ALVGPNGAGKS 441
A+VG NG+GKS
Sbjct: 30 AIVGANGSGKS 40
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase;
1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A*
3ffu_A*
Length = 153
Score = 28.4 bits (64), Expect = 4.2
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 44 GVKQEPEEISPEEALCRKLE 63
G K E E +PEEAL R+L
Sbjct: 54 GGKIENGE-TPEEALARELN 72
>2olt_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, unknown function; HET: MSE; 2.00A {Shewanella
oneidensis} PDB: 2iiu_A*
Length = 227
Score = 28.8 bits (64), Expect = 4.2
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 9/85 (10%)
Query: 142 DHIDIFHLTREMPASDKSALTCVMEVD--EERV--RLEKLAEQLVACEDDESQEQLM--- 194
+ +D + E+D EE +L QL A E + + +M
Sbjct: 141 NELDDLLEAGFRGREVDFVAKMINELDIIEEDTDDLQIQLRRQLFALESELNPVDVMFLY 200
Query: 195 DIYDRLDDISADTAEARAANILHGL 219
+ + + AD AE R + L +
Sbjct: 201 KTIEWVGGL-ADLAE-RVGSRLELM 223
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 28.7 bits (65), Expect = 4.4
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 432 LVGPNGAGKSTLLNLI---YGDLTPSV 455
L GP+ GKST++ + +L SV
Sbjct: 25 LSGPSAVGKSTVVRCLRERIPNLHFSV 51
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 28.6 bits (65), Expect = 4.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 432 LVGPNGAGKSTLLNLIYGDLTPSVGM 457
L GP+G GK T+ ++ D S
Sbjct: 13 LSGPSGVGKGTVREAVFKDPETSFDY 38
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4,
structural genomics, ubiquitin biology, structural
genomics consortium, SGC; 1.25A {Homo sapiens}
Length = 127
Score = 27.8 bits (62), Expect = 5.3
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 210 ARAANILHGLGFTKEMQQKKTKDFSGG---WRMRI 241
+A IL L +E+ +D GG W +I
Sbjct: 86 QKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAKI 120
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 28.6 bits (64), Expect = 5.3
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 391 SCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEFGID---LDTRLALVGPNGAGKSTL 443
K ++ ++ D+ I + + + LVG G+GK+T+
Sbjct: 9 VSDKNSSALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTV 64
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 28.9 bits (64), Expect = 5.3
Identities = 3/32 (9%), Positives = 10/32 (31%)
Query: 416 IYRNLEFGIDLDTRLALVGPNGAGKSTLLNLI 447
+ + + A+V G + + +
Sbjct: 108 PVKYSALTSNNEECTAVVARGGTANAIRIAAV 139
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 28.2 bits (64), Expect = 5.5
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 429 RLALVG-PNGAGKSTLLNLIYG 449
++ +VG PN GKS+L N +
Sbjct: 3 KVVIVGRPN-VGKSSLFNRLLK 23
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 28.5 bits (63), Expect = 5.6
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 104 QDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNREVPVPDHIDIFHLTREMPASDKSALTC 163
+M+ R ++G++GSGK+T+ + + D FH
Sbjct: 20 FQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPE---NIATMQRGI 76
Query: 164 VMEVDEERVRLEKLAEQLVACED 186
+ ++ L LAE + A D
Sbjct: 77 PLTDEDRWPWLRSLAEWMDARAD 99
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 28.4 bits (64), Expect = 5.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 418 RNLEFGIDLDTRLALVGPNGAGKSTL 443
NL F + R+ L G GAGK+TL
Sbjct: 16 ENLYFQSNAMVRIFLTGYMGAGKTTL 41
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 28.5 bits (63), Expect = 5.9
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 118 LLGLNGSGKSTLLAVLGNR-EVPVPDHIDIFHLTREMPASDKSALTCVMEVDEERVR-LE 175
++G++GSGKS++ + P + + S+ LT D++R L
Sbjct: 23 VMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLT-----DDDRWPWLA 77
Query: 176 KLAEQLVAC 184
+ E+L +
Sbjct: 78 AIGERLASR 86
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas
aeruginosa}
Length = 191
Score = 28.3 bits (64), Expect = 6.0
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 379 VTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLEF 422
+ T F + K+ P ++ + V++ Y D +++ + EF
Sbjct: 47 LLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPLYVFMDSEF 90
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious
diseases, hydrol structural genomics; 2.10A {Bartonella
henselae}
Length = 158
Score = 28.1 bits (63), Expect = 6.0
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 44 GVKQEPEEISPEEALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIANFSITFHGCELL 103
G K E E +PE +L R+LE + ++ +A + + + C
Sbjct: 62 GGKVEQGE-TPEASLIRELEEELGVHVQADNLFPLTFASHGYETFHL---LMPLYFCSHY 117
Query: 104 QDT 106
+
Sbjct: 118 KGV 120
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 28.2 bits (64), Expect = 6.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 430 LALVGPNGAGKSTLLN 445
L L+G +G G+ + N
Sbjct: 8 LVLLGAHGVGRRHIKN 23
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic
protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2
b.40.4.5
Length = 138
Score = 27.8 bits (62), Expect = 6.3
Identities = 5/43 (11%), Positives = 14/43 (32%)
Query: 379 VTTDKTVTFTFPSCGKIPPPVIMVQNVSFRYSDDGPWIYRNLE 421
+ K + P+ ++ P+I + ++E
Sbjct: 50 IFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAITPDTVQIMDME 92
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 28.4 bits (64), Expect = 6.7
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 428 TRLALVG-PNGAGKSTLLNLIYG 449
T L+G PN GK+TL N +
Sbjct: 2 THALLIGNPN-CGKTTLFNALTN 23
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 28.1 bits (63), Expect = 6.9
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 103 LQDTMLELNCGRRY--GLLGLNGSGKST----LLAVLGNREVPVPD-HIDIFHLTRE 152
L T+L + R G+ GL+ SGK+T L L + + V H+D + R
Sbjct: 10 LCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure
INIT NEW YORK SGX research center for structural
genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum
rubrum}
Length = 144
Score = 27.7 bits (62), Expect = 6.9
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 44 GVKQEPEEISPEEALCRKLE 63
G K EP E +PE AL R+L
Sbjct: 41 GGKLEPGE-TPEAALVRELA 59
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
antiviral GTPase, membrane associated, PR binding; 3.50A
{Homo sapiens} PDB: 3zys_B
Length = 608
Score = 28.9 bits (64), Expect = 7.1
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 429 RLALVGPNGAGKSTLLNLIYGDLTP-SVGMV-RKNSHLRFARYHQHLHELLDLDISPLDY 486
+A++G +GKS++L + G P G+V R L+ + + +
Sbjct: 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEI 106
Query: 487 MLQSFPEVKD--REEMRKIIGR 506
+ EV+ + I G
Sbjct: 107 EISDASEVEKEINKAQNAIAGE 128
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 27.9 bits (63), Expect = 7.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 429 RLALVGPNGAGKST 442
+ LVG G+GKST
Sbjct: 4 KAVLVGLPGSGKST 17
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA
binding, DNA repair, mismatch recognition; HET: DNA ADP;
2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12
c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A*
1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Length = 800
Score = 28.6 bits (65), Expect = 7.7
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 424 IDLDTRLALV-GPNGAGKSTLL 444
+ R+ ++ GPN GKST +
Sbjct: 603 LSPQRRMLIITGPNMGGKSTYM 624
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 27.9 bits (63), Expect = 7.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 430 LALVGPNGAGKSTLLN 445
L L+G +G G+S + N
Sbjct: 22 LVLIGASGVGRSHIKN 37
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 28.4 bits (64), Expect = 8.1
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 431 ALVGPNGAGKS 441
A+VGPNG+GKS
Sbjct: 28 AIVGPNGSGKS 38
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 27.5 bits (62), Expect = 8.2
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 429 RLALVG-PNGAGKSTLLNLIYG 449
+AL+G PN GKST+ N + G
Sbjct: 5 EIALIGNPN-VGKSTIFNALTG 25
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 27.5 bits (61), Expect = 8.5
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 117 GLLGLNGSGKSTLLAVLGNREVPVPDHIDIFH 148
+ G+ GSGKS +L R V D+
Sbjct: 5 LITGMPGSGKSEFAKLLKERGAKVIVMSDVVR 36
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 27.5 bits (62), Expect = 8.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 118 LLGLNGSGKSTLLAVLGNREV 138
+LGL+G+GK+T+L L EV
Sbjct: 12 ILGLDGAGKTTILYRLQVGEV 32
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 28.2 bits (63), Expect = 8.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 429 RLALVGPNGAGKSTLLN 445
R+ + G G GKST ++
Sbjct: 57 RVGITGVPGVGKSTTID 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 28.6 bits (63), Expect = 9.0
Identities = 10/52 (19%), Positives = 20/52 (38%)
Query: 5 AKKKQQQKKKEQAKGRGAAAPKKPTTSATNDVKPEQITNGVKQEPEEISPEE 56
A+ K + KK ++ KG KK + + + +E +E +
Sbjct: 819 ARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKN 870
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle
structural genomics center for infectious transferase;
1.90A {Burkholderia thailandensis}
Length = 227
Score = 28.0 bits (63), Expect = 9.2
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 120 GLNGSGKSTLLAVLGN--REVPVPDHIDIFHLTRE 152
G++G+GK+T L + +E P + +TRE
Sbjct: 32 GIDGAGKTTHLQWFCDRLQERLGPAGRHVV-VTRE 65
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 28.2 bits (63), Expect = 9.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 429 RLALVGPNGAGKSTLLN 445
RL + G GAGKST L
Sbjct: 58 RLGVTGTPGAGKSTFLE 74
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 27.8 bits (63), Expect = 9.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 432 LVGPNGAGKSTLLNLI 447
L GP+GAGKSTLL +
Sbjct: 9 LSGPSGAGKSTLLKKL 24
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 27.9 bits (62), Expect = 9.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 101 ELLQDTMLELNCGRRYGLLGLNGSGKSTLLAVLGNR 136
+LL + + R G+ G+ G GKST + LG
Sbjct: 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102
Score = 27.9 bits (62), Expect = 9.9
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 429 RLALVGPNGAGKSTLLN 445
R+ + G G GKST +
Sbjct: 81 RVGITGVPGVGKSTAIE 97
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 28.3 bits (62), Expect = 9.5
Identities = 12/81 (14%), Positives = 27/81 (33%)
Query: 33 TNDVKPEQITNGVKQEPEEISPEEALCRKLEADAKLNAEARACTGSLAVHPKSRDVKIAN 92
P+ + + V E + ++ RK E A + + ++ +I
Sbjct: 154 GLGGLPDIVRDRVTSAVEALLSADSASRKQEVQAWDGEVRQVSKHAFSLKQLDNPARIPP 213
Query: 93 FSITFHGCELLQDTMLELNCG 113
C++ ++ L L G
Sbjct: 214 CGWKCSKCDMRENLWLNLTDG 234
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 27.6 bits (62), Expect = 9.7
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Query: 422 FGIDLDTRLALVGPNGAGKSTLLN-LIYGDL---TPSVG-----MVRKNSHLRF 466
+G + + R+ ++G +GAGK+T+L L G++ P++G + KN L
Sbjct: 13 WGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNV 66
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4;
1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB:
1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A*
1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A*
2ea4_A* 2ga2_A* 2oaz_A*
Length = 478
Score = 28.3 bits (63), Expect = 9.8
Identities = 11/63 (17%), Positives = 28/63 (44%)
Query: 5 AKKKQQQKKKEQAKGRGAAAPKKPTTSATNDVKPEQITNGVKQEPEEISPEEALCRKLEA 64
KK++++KK + G P K + ++ ++V + + ++ + + E+ A
Sbjct: 36 KKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGA 95
Query: 65 DAK 67
K
Sbjct: 96 TGK 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.395
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,912,599
Number of extensions: 632252
Number of successful extensions: 2503
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2398
Number of HSP's successfully gapped: 371
Length of query: 629
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 530
Effective length of database: 3,937,614
Effective search space: 2086935420
Effective search space used: 2086935420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.4 bits)