Query psy10513
Match_columns 239
No_of_seqs 153 out of 1230
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 20:09:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15022 ferritin-like protein 100.0 2.5E-45 5.5E-50 308.0 19.3 156 69-228 1-161 (167)
2 PRK10304 ferritin; Provisional 100.0 3.2E-43 6.8E-48 295.1 19.9 156 69-228 1-161 (165)
3 cd00904 Ferritin Ferritin iron 100.0 2.3E-43 4.9E-48 293.8 17.3 153 71-223 1-160 (160)
4 COG1528 Ftn Ferritin-like prot 100.0 6E-43 1.3E-47 291.2 19.2 158 69-230 1-163 (167)
5 KOG2332|consensus 100.0 1.4E-43 2.9E-48 298.2 13.5 167 61-227 4-177 (178)
6 cd01056 Euk_Ferritin eukaryoti 100.0 2.5E-40 5.4E-45 275.3 18.1 153 71-223 1-160 (161)
7 cd01055 Nonheme_Ferritin nonhe 100.0 2.9E-36 6.4E-41 247.9 19.2 151 71-225 1-156 (156)
8 PRK10635 bacterioferritin; Pro 100.0 5.4E-30 1.2E-34 213.6 20.5 148 71-223 4-153 (158)
9 TIGR00754 bfr bacterioferritin 100.0 2.2E-28 4.9E-33 202.4 20.3 146 71-221 4-151 (157)
10 cd00907 Bacterioferritin Bacte 99.9 1.4E-25 3E-30 183.3 19.7 146 71-221 3-150 (153)
11 PF00210 Ferritin: Ferritin-li 99.9 5.8E-26 1.3E-30 180.5 16.7 137 75-216 1-142 (142)
12 COG2193 Bfr Bacterioferritin ( 99.9 7.4E-24 1.6E-28 173.2 18.3 145 72-221 5-151 (157)
13 cd01041 Rubrerythrin Rubreryth 99.9 2.7E-23 5.9E-28 167.7 16.3 131 74-213 2-133 (134)
14 cd01052 DPSL DPS-like protein, 99.9 2.4E-22 5.1E-27 163.3 17.4 135 71-210 4-148 (148)
15 cd01046 Rubrerythrin_like rubr 99.8 1.6E-19 3.5E-24 144.4 16.1 121 74-213 2-122 (123)
16 PRK13456 DNA protection protei 99.8 2.3E-17 4.9E-22 140.3 17.7 135 71-211 18-163 (186)
17 cd01043 DPS DPS protein, ferri 99.5 1.9E-12 4.2E-17 104.6 14.4 129 77-209 2-138 (139)
18 cd07908 Mn_catalase_like Manga 99.4 6.3E-11 1.4E-15 97.5 16.5 133 71-210 11-154 (154)
19 cd00657 Ferritin_like Ferritin 99.3 1.1E-10 2.4E-15 88.2 15.7 123 77-209 2-129 (130)
20 cd01051 Mn_catalase Manganese 99.1 1E-08 2.2E-13 85.6 15.7 134 72-213 19-155 (156)
21 cd01045 Ferritin_like_AB Uncha 99.1 5.3E-09 1.1E-13 82.1 13.2 125 76-209 1-138 (139)
22 PF02915 Rubrerythrin: Rubrery 98.9 5.5E-08 1.2E-12 76.4 14.6 127 76-209 1-136 (137)
23 COG2406 Protein distantly rela 98.9 3.4E-07 7.3E-12 75.4 16.8 134 72-211 16-160 (172)
24 PRK09448 DNA starvation/statio 98.8 3.9E-07 8.5E-12 76.4 17.3 133 71-210 20-160 (162)
25 COG0783 Dps DNA-binding ferrit 98.5 1.2E-05 2.5E-10 67.3 17.0 133 72-209 14-154 (156)
26 COG1633 Uncharacterized conser 98.5 1.3E-05 2.9E-10 68.1 17.2 138 70-216 21-172 (176)
27 cd01044 Ferritin_CCC1_N Ferrit 98.5 5.9E-06 1.3E-10 65.9 14.1 117 77-211 2-124 (125)
28 PRK12775 putative trifunctiona 98.2 6E-05 1.3E-09 79.1 18.3 190 16-215 797-1000(1006)
29 COG1592 Rubrerythrin [Energy p 98.1 0.00019 4.1E-09 60.6 14.0 125 74-214 5-130 (166)
30 PF13668 Ferritin_2: Ferritin- 98.0 0.0013 2.8E-08 52.7 17.0 130 75-211 3-136 (137)
31 cd01042 DMQH Demethoxyubiquino 97.5 0.0049 1.1E-07 52.0 13.6 120 83-208 10-136 (165)
32 TIGR02284 conserved hypothetic 97.1 0.014 3E-07 47.7 12.4 124 75-206 2-135 (139)
33 cd01048 Ferritin_like_AB2 Unch 97.1 0.039 8.4E-07 44.7 14.8 118 76-206 3-131 (135)
34 PF03405 FA_desaturase_2: Fatt 96.7 0.16 3.4E-06 47.4 17.1 169 45-216 26-214 (330)
35 cd01050 Acyl_ACP_Desat Acyl AC 96.5 0.28 6.1E-06 45.1 17.4 167 46-216 25-208 (297)
36 PF09537 DUF2383: Domain of un 96.5 0.013 2.9E-07 45.3 7.4 98 73-175 1-108 (111)
37 PF03232 COQ7: Ubiquinone bios 96.5 0.13 2.8E-06 43.8 13.9 128 76-208 5-142 (172)
38 PF05974 DUF892: Domain of unk 95.9 0.87 1.9E-05 37.8 16.4 138 70-213 2-153 (159)
39 PF04305 DUF455: Protein of un 95.0 0.4 8.8E-06 43.1 11.6 134 74-213 67-208 (253)
40 PF05067 Mn_catalase: Manganes 94.3 1.1 2.4E-05 41.1 12.6 139 71-217 18-198 (283)
41 COG1633 Uncharacterized conser 93.9 0.39 8.5E-06 40.9 8.4 60 152-215 23-82 (176)
42 PF12902 Ferritin-like: Ferrit 92.0 0.89 1.9E-05 40.2 8.2 62 78-141 1-62 (227)
43 PF02915 Rubrerythrin: Rubrery 91.9 0.94 2E-05 34.9 7.5 56 156-213 1-56 (137)
44 cd01045 Ferritin_like_AB Uncha 91.5 1 2.3E-05 34.6 7.3 55 156-214 1-55 (139)
45 cd07910 MiaE MiaE tRNA-modifyi 91.4 8.6 0.00019 33.0 16.8 124 73-206 18-151 (180)
46 COG3546 Mn-containing catalase 90.6 3.2 6.8E-05 37.7 10.2 138 71-217 18-193 (277)
47 COG2941 CAT5 Ubiquinone biosyn 90.5 5.8 0.00013 34.4 11.3 111 83-206 51-174 (204)
48 cd07909 YciF YciF bacterial st 87.8 14 0.00031 30.5 16.9 129 74-208 4-145 (147)
49 cd01052 DPSL DPS-like protein, 87.1 5.6 0.00012 31.6 8.7 61 153-214 6-66 (148)
50 cd01041 Rubrerythrin Rubreryth 86.9 3.8 8.3E-05 32.5 7.6 59 73-133 73-132 (134)
51 cd01046 Rubrerythrin_like rubr 86.8 3.3 7.2E-05 32.7 7.1 59 72-132 62-120 (123)
52 COG2833 Uncharacterized protei 86.1 20 0.00043 32.3 12.1 125 72-207 74-210 (268)
53 cd00907 Bacterioferritin Bacte 86.1 6.4 0.00014 31.5 8.6 61 153-214 5-65 (153)
54 PF00210 Ferritin: Ferritin-li 85.8 5.8 0.00013 30.6 8.0 60 155-215 1-60 (142)
55 PLN00179 acyl- [acyl-carrier p 85.7 9.5 0.00021 36.4 10.5 168 47-216 85-271 (390)
56 cd00657 Ferritin_like Ferritin 83.4 8.4 0.00018 28.0 7.6 53 157-213 2-54 (130)
57 COG3685 Uncharacterized protei 82.5 29 0.00063 29.4 15.8 138 69-213 5-156 (167)
58 cd07908 Mn_catalase_like Manga 81.6 7.2 0.00016 31.6 7.1 55 71-130 99-153 (154)
59 PF13668 Ferritin_2: Ferritin- 81.4 8.4 0.00018 30.5 7.3 56 155-211 3-63 (137)
60 PF09537 DUF2383: Domain of un 81.3 14 0.0003 28.2 8.3 57 154-214 2-58 (111)
61 PRK12775 putative trifunctiona 81.2 6.5 0.00014 41.9 8.4 57 152-212 859-915 (1006)
62 cd07647 F-BAR_PSTPIP The F-BAR 79.4 23 0.00049 31.2 10.0 29 106-134 21-49 (239)
63 cd01055 Nonheme_Ferritin nonhe 78.2 15 0.00033 29.6 8.0 58 74-133 81-138 (156)
64 PF14530 DUF4439: Domain of un 76.2 40 0.00086 27.3 15.8 109 77-198 1-111 (131)
65 cd01051 Mn_catalase Manganese 75.8 25 0.00055 29.1 8.8 62 68-134 94-155 (156)
66 cd07610 FCH_F-BAR The Extended 75.5 45 0.00097 27.5 11.5 35 105-139 15-49 (191)
67 cd07673 F-BAR_FCHO2 The F-BAR 73.1 45 0.00097 30.0 10.4 31 106-136 28-58 (269)
68 cd07649 F-BAR_GAS7 The F-BAR ( 72.6 52 0.0011 29.1 10.4 94 106-216 21-115 (233)
69 cd07648 F-BAR_FCHO The F-BAR ( 72.4 50 0.0011 29.2 10.4 32 106-137 21-52 (261)
70 cd07653 F-BAR_CIP4-like The F- 72.3 66 0.0014 28.0 11.9 32 105-136 20-51 (251)
71 cd01048 Ferritin_like_AB2 Unch 69.9 20 0.00043 28.8 6.6 53 155-214 2-54 (135)
72 PF07875 Coat_F: Coat F domain 68.4 37 0.0008 23.5 8.4 56 76-136 4-59 (64)
73 PF05974 DUF892: Domain of unk 66.6 49 0.0011 27.3 8.5 57 154-214 6-62 (159)
74 PF11860 DUF3380: Protein of u 65.4 13 0.00028 31.8 4.8 59 75-135 77-135 (175)
75 cd07651 F-BAR_PombeCdc15_like 63.6 1E+02 0.0022 26.9 11.1 32 105-136 20-51 (236)
76 smart00055 FCH Fes/CIP4 homolo 60.0 62 0.0013 23.2 7.3 28 106-133 25-52 (87)
77 PRK13456 DNA protection protei 59.2 62 0.0014 27.9 7.9 57 73-132 107-163 (186)
78 cd07909 YciF YciF bacterial st 58.3 84 0.0018 25.9 8.4 56 154-213 4-59 (147)
79 cd07657 F-BAR_Fes_Fer The F-BA 58.1 1.3E+02 0.0029 26.5 12.3 28 106-133 21-48 (237)
80 cd07671 F-BAR_PSTPIP1 The F-BA 57.7 1.4E+02 0.003 26.5 11.6 91 107-215 22-113 (242)
81 PRK10635 bacterioferritin; Pro 57.1 67 0.0015 26.6 7.7 59 72-132 81-139 (158)
82 cd07672 F-BAR_PSTPIP2 The F-BA 57.0 1.4E+02 0.0031 26.4 10.5 92 106-214 21-113 (240)
83 cd07674 F-BAR_FCHO1 The F-BAR 56.8 34 0.00074 30.5 6.3 30 106-135 21-50 (261)
84 PF06175 MiaE: tRNA-(MS[2]IO[6 56.4 1.5E+02 0.0033 26.6 15.5 128 72-206 26-202 (240)
85 PRK13654 magnesium-protoporphy 55.7 1.4E+02 0.003 28.3 10.1 134 72-209 82-218 (355)
86 TIGR02029 AcsF magnesium-proto 55.0 1.8E+02 0.0038 27.4 10.6 133 72-208 72-207 (337)
87 cd01044 Ferritin_CCC1_N Ferrit 53.9 82 0.0018 24.5 7.4 52 158-213 3-54 (125)
88 CHL00185 ycf59 magnesium-proto 53.8 1.9E+02 0.0041 27.4 10.6 134 72-209 78-214 (351)
89 cd07652 F-BAR_Rgd1 The F-BAR ( 53.2 1.6E+02 0.0034 25.9 12.2 31 106-136 21-51 (234)
90 cd07658 F-BAR_NOSTRIN The F-BA 52.8 1.3E+02 0.0028 26.5 9.3 28 106-133 21-48 (239)
91 cd01047 ACSF Aerobic Cyclase S 52.3 1.8E+02 0.0038 27.3 10.1 135 71-209 61-198 (323)
92 PF03232 COQ7: Ubiquinone bios 52.3 91 0.002 26.4 7.8 58 154-214 3-60 (172)
93 TIGR02284 conserved hypothetic 49.7 78 0.0017 25.6 6.8 55 156-214 3-57 (139)
94 PF12981 DUF3865: Domain of Un 48.6 1.9E+02 0.0041 25.8 9.3 121 90-213 53-198 (231)
95 COG1592 Rubrerythrin [Energy p 45.8 1.2E+02 0.0027 25.6 7.6 59 153-212 4-62 (166)
96 KOG4061|consensus 45.0 2.1E+02 0.0045 24.9 9.1 117 83-205 58-184 (217)
97 cd01056 Euk_Ferritin eukaryoti 43.7 1.8E+02 0.0038 23.7 8.4 59 153-212 3-63 (161)
98 PF02332 Phenol_Hydrox: Methan 42.4 2.3E+02 0.0051 24.7 15.9 131 75-213 76-227 (233)
99 PF08066 PMC2NT: PMC2NT (NUC01 41.9 50 0.0011 24.7 4.2 57 106-163 22-79 (91)
100 COG3685 Uncharacterized protei 41.8 2.1E+02 0.0046 24.3 8.3 56 154-213 10-65 (167)
101 PF00611 FCH: Fes/CIP4, and EF 41.2 51 0.0011 23.6 4.1 30 106-135 25-54 (91)
102 PLN02508 magnesium-protoporphy 39.8 1.9E+02 0.0041 27.4 8.3 133 72-208 78-213 (357)
103 PRK10304 ferritin; Provisional 38.0 2.4E+02 0.0051 23.5 8.7 59 153-212 5-63 (165)
104 PF10097 DUF2335: Predicted me 37.5 71 0.0015 21.6 4.0 30 104-133 11-40 (50)
105 COG4445 MiaE Hydroxylase for s 37.4 2.7E+02 0.0058 24.0 14.5 127 77-216 32-167 (203)
106 PF03359 GKAP: Guanylate-kinas 36.4 3.7E+02 0.0081 25.3 11.9 101 110-216 171-275 (357)
107 PF07875 Coat_F: Coat F domain 35.5 1.5E+02 0.0032 20.4 8.8 52 155-210 3-54 (64)
108 PF03979 Sigma70_r1_1: Sigma-7 35.0 57 0.0012 23.9 3.5 56 165-222 2-57 (82)
109 TIGR00754 bfr bacterioferritin 34.5 2.5E+02 0.0053 22.6 7.8 57 74-132 83-139 (157)
110 PF06744 DUF1215: Protein of u 34.2 2.2E+02 0.0047 22.3 7.0 93 69-161 26-122 (125)
111 PF11553 DUF3231: Protein of u 33.4 2.6E+02 0.0057 22.8 7.7 41 106-146 123-163 (166)
112 cd01042 DMQH Demethoxyubiquino 33.2 1.4E+02 0.003 25.2 6.0 52 158-213 5-56 (165)
113 COG2996 Predicted RNA-bindinin 30.0 48 0.001 30.4 2.8 51 114-164 216-269 (287)
114 cd07678 F-BAR_FCHSD1 The F-BAR 28.7 4.5E+02 0.0097 23.9 13.1 87 92-178 7-98 (263)
115 COG1152 CdhA CO dehydrogenase/ 27.8 2.6E+02 0.0056 28.7 7.6 90 120-210 110-211 (772)
116 PRK07209 ribonucleotide-diphos 26.5 3.3E+02 0.0071 25.6 7.9 78 87-172 214-296 (369)
117 PF12862 Apc5: Anaphase-promot 26.4 2E+02 0.0043 21.1 5.3 71 117-193 14-85 (94)
118 PF03713 DUF305: Domain of unk 26.3 3.4E+02 0.0073 21.7 7.7 102 105-210 27-151 (151)
119 cd07656 F-BAR_srGAP The F-BAR 26.1 4.6E+02 0.01 23.2 12.0 32 105-136 20-51 (241)
120 COG4902 Uncharacterized protei 25.0 4.2E+02 0.0092 22.4 12.1 60 67-135 43-102 (189)
121 PRK05685 fliS flagellar protei 24.9 1.7E+02 0.0038 23.3 5.0 55 152-214 62-118 (132)
122 PRK09448 DNA starvation/statio 24.7 3.6E+02 0.0079 22.2 7.1 61 151-212 20-80 (162)
123 COG3943 Virulence protein [Gen 24.2 2.9E+02 0.0063 25.1 6.6 64 111-181 100-164 (329)
124 cd07625 BAR_Vps17p The Bin/Amp 23.5 5.2E+02 0.011 22.9 9.5 63 151-214 159-228 (230)
125 cd01043 DPS DPS protein, ferri 23.1 1.4E+02 0.0031 23.3 4.2 56 157-213 2-57 (139)
126 KOG3633|consensus 21.8 5.4E+02 0.012 22.4 14.9 131 70-215 54-203 (219)
127 cd07681 F-BAR_PACSIN3 The F-BA 21.8 6E+02 0.013 22.9 9.9 51 106-163 21-71 (258)
128 PF02561 FliS: Flagellar prote 21.0 1.9E+02 0.0041 22.5 4.4 53 154-214 58-112 (122)
129 PRK13182 racA polar chromosome 20.8 5.2E+02 0.011 21.9 7.8 69 123-193 44-123 (175)
130 KOG1953|consensus 20.1 9.5E+02 0.021 26.4 10.2 85 88-188 482-581 (1235)
No 1
>PRK15022 ferritin-like protein; Provisional
Probab=100.00 E-value=2.5e-45 Score=308.01 Aligned_cols=156 Identities=22% Similarity=0.360 Sum_probs=150.7
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCc
Q psy10513 69 NFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSK 148 (239)
Q Consensus 69 n~s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~ 148 (239)
+++++++++||+|||.|++|||+|++||+||+ +.+|+|||+||+.+|.|||+||++|++||++|||+|.+.+|++|..
T Consensus 1 m~~~~~~~~LN~QIn~E~~aSy~YLsMa~~~~--~~~L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P~~ 78 (167)
T PRK15022 1 MATAGMLLKLNSQMNLEFYASNLYLHLSEWCS--EQSLNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVPGE 78 (167)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCCcc
Confidence 46789999999999999999999999999998 6799999999999999999999999999999999999999999984
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhHH-----HHHHHH
Q psy10513 149 QEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRRTQ-----LYLVDR 223 (239)
Q Consensus 149 ~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~~g-----~ylfDk 223 (239)
+|+|++++|+.+|++|+.||+.|++|+++|.+++|++|++||+| ||.||++++..+.+++++++++| +|+||+
T Consensus 79 -~~~s~~e~fe~al~hEk~vt~~I~~L~~~A~~~~D~~t~~FL~w-fv~EQ~eEe~~~~~ild~l~~~~~~g~g~~~~D~ 156 (167)
T PRK15022 79 -KLNSLEELFQKTLEEYEQRSSTLAQLADEAKALNDDSTLNFLRD-LEKEQQHDGLLLQTILDEVRSAKLAGLCPVQTDQ 156 (167)
T ss_pred -ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcchhHhhH
Confidence 99999999999999999999999999999999999999999999 99999999999999999999886 899999
Q ss_pred HhcCC
Q psy10513 224 DLMSG 228 (239)
Q Consensus 224 ~L~~~ 228 (239)
+++..
T Consensus 157 ~~~~~ 161 (167)
T PRK15022 157 HLLNV 161 (167)
T ss_pred HHHHh
Confidence 99875
No 2
>PRK10304 ferritin; Provisional
Probab=100.00 E-value=3.2e-43 Score=295.07 Aligned_cols=156 Identities=27% Similarity=0.504 Sum_probs=150.6
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCc
Q psy10513 69 NFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSK 148 (239)
Q Consensus 69 n~s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~ 148 (239)
+++++|+++||+|||.||+|+++|++||.||+ ++||+|||+||+.+|.|||+||++|++||++|||.|.+++|+.|..
T Consensus 1 ~~~~~i~~~Ln~qin~El~As~~Yl~ma~~~~--~~gl~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~ 78 (165)
T PRK10304 1 MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCS--YHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFA 78 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCcc
Confidence 36889999999999999999999999999999 7899999999999999999999999999999999999999998875
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhHH-----HHHHHH
Q psy10513 149 QEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRRTQ-----LYLVDR 223 (239)
Q Consensus 149 ~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~~g-----~ylfDk 223 (239)
+|.|+.++|+.+|++|+.|+..|++|+++|.+++|++|++||+| ||.|||++++.+++++++++++| +|+||+
T Consensus 79 -~~~s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl~~-fl~EQveEe~~~~~l~~~l~~~~~~g~~~y~~D~ 156 (165)
T PRK10304 79 -EYSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQW-YVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDK 156 (165)
T ss_pred -ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHhH
Confidence 89999999999999999999999999999999999999999999 99999999999999999999996 899999
Q ss_pred HhcCC
Q psy10513 224 DLMSG 228 (239)
Q Consensus 224 ~L~~~ 228 (239)
+++..
T Consensus 157 ~l~~~ 161 (165)
T PRK10304 157 ELSTL 161 (165)
T ss_pred HHHHh
Confidence 99753
No 3
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=100.00 E-value=2.3e-43 Score=293.81 Aligned_cols=153 Identities=44% Similarity=0.716 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccc
Q psy10513 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQE 150 (239)
Q Consensus 71 s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~ 150 (239)
+++|+++||+||+.||.|+++|++||+||++++|||+|||+||+.+|+|||+||++|++||++|||.|.++.|++|...+
T Consensus 1 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~~~~ 80 (160)
T cd00904 1 SEKVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPPSDE 80 (160)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCcccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998658
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhHH-------HHHHHH
Q psy10513 151 WNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRRTQ-------LYLVDR 223 (239)
Q Consensus 151 ~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~~g-------~ylfDk 223 (239)
|++++++|+.+|++|+.|+..|++|+++|.+++|++|++||+|+||.||+++++++.++|++|+++| +|+||+
T Consensus 81 ~~~~~e~~e~al~~Ek~v~~~i~~l~~~A~~~~D~~t~~fl~~~fi~eQ~ee~~~~~~~l~~l~~~~~~~~~~~~~~~D~ 160 (160)
T cd00904 81 WGGTLDAMEAALKLEKFVNQALLDLHELASEEKDPHLCDFLESHFLDEQVKEIKQVGDILTNLERLNGQQAGSGEYLFDR 160 (160)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhhcCCCCCceeeeeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999885 698885
No 4
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-43 Score=291.17 Aligned_cols=158 Identities=30% Similarity=0.546 Sum_probs=153.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCc
Q psy10513 69 NFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSK 148 (239)
Q Consensus 69 n~s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~ 148 (239)
+++++++++||+|||.|++|+++|++||+||+ +.+|+|+|+||+.||.||+.||++|++|++.||++|.+..|.+|..
T Consensus 1 mls~~~~~~LN~Q~N~E~yas~lYl~maa~~~--~~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~P~~ 78 (167)
T COG1528 1 MLSEKMIELLNEQMNLEFYASNLYLQMAAWCS--SESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEAPPN 78 (167)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcCCCcc
Confidence 36789999999999999999999999999999 7899999999999999999999999999999999999999999997
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhHH-----HHHHHH
Q psy10513 149 QEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRRTQ-----LYLVDR 223 (239)
Q Consensus 149 ~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~~g-----~ylfDk 223 (239)
+|+++.++|+.+|++|+.||..|++|+++|.+++|+.|.+||+| ||.||+|++..++++|++++++| +|++|+
T Consensus 79 -~~~s~~e~f~~tlehEq~vt~~I~~L~~~a~~~kD~~T~nFLqW-fv~EQ~eEe~l~~~I~d~~~~ag~~~~~l~~~D~ 156 (167)
T COG1528 79 -KFSSLKELFEKTLEHEQKVTSSINELAEVAREEKDYATFNFLQW-FVAEQVEEEKLFKTILDKLELAGNDGEGLYLIDK 156 (167)
T ss_pred -ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCccchhhhHH
Confidence 89999999999999999999999999999999999999999999 99999999999999999999998 999999
Q ss_pred HhcCCCC
Q psy10513 224 DLMSGKF 230 (239)
Q Consensus 224 ~L~~~k~ 230 (239)
+|++...
T Consensus 157 ~L~~~~~ 163 (167)
T COG1528 157 ELKNRAS 163 (167)
T ss_pred HHHhhcc
Confidence 9998754
No 5
>KOG2332|consensus
Probab=100.00 E-value=1.4e-43 Score=298.22 Aligned_cols=167 Identities=43% Similarity=0.725 Sum_probs=162.5
Q ss_pred CccccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q psy10513 61 KTERQTLQNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRL 140 (239)
Q Consensus 61 ~~~s~~rqn~s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l 140 (239)
.+.+.+||+|+.+++.++|.|||.|+++||+|++||+||+|++++++||++||..+|.|||+||++|++|+++|||+|.+
T Consensus 4 ~~~~~~r~~~~~~~~~~in~~in~el~~sy~Ylsma~yf~rd~v~l~g~~~ff~~~s~eereha~klm~~~n~rgg~i~l 83 (178)
T KOG2332|consen 4 KMSSEARQNYHDEAEAAINSQINLELNASYVYLSMAAYFDRDDVALKGFAKFFLKQSQEEREHAEKLMKTQNMRGGRIEL 83 (178)
T ss_pred cchHHHhhcchhhccchhhhhccchhccchhhhhhhhccCccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHhCCcccc
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhHH---
Q psy10513 141 TSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRRTQ--- 217 (239)
Q Consensus 141 ~~I~~p~~~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~~g--- 217 (239)
++|..|..++|++.+++|+.||.+|+.|+++|.+|+.+|.+.+|+++++||+.+||.|||+.|++|.+++++++++|
T Consensus 84 ~~i~~P~~~ew~~~l~ale~al~LEk~vn~sLl~Lh~lA~~knD~hL~dflE~~fL~eQVksIkeL~~~~~~l~k~~~~~ 163 (178)
T KOG2332|consen 84 QDIKKPELDEWGKGLEALEAALHLEKNVNQSLLELHSLATKKNDPHLCDFLESHFLNEQVKSIKELSDYLANLKKMGAPD 163 (178)
T ss_pred ccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhhhHHHHHHHHHHHHHHHhHHhccCCC
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----HHHHHHHhcC
Q psy10513 218 ----LYLVDRDLMS 227 (239)
Q Consensus 218 ----~ylfDk~L~~ 227 (239)
.|+||+.+.+
T Consensus 164 ~g~~~~lfd~~~~~ 177 (178)
T KOG2332|consen 164 GGLGEYLFDKYLLS 177 (178)
T ss_pred Cchhhhhhhhhhcc
Confidence 8999999865
No 6
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=100.00 E-value=2.5e-40 Score=275.27 Aligned_cols=153 Identities=48% Similarity=0.797 Sum_probs=146.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccc
Q psy10513 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQE 150 (239)
Q Consensus 71 s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~ 150 (239)
+++|+++||+||+.||.|+++|++||.||++.++|++|||+||+.+|+|||+||++|++||+.|||.|++++|++|....
T Consensus 1 ~~~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~~~ 80 (161)
T cd01056 1 HEECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKDE 80 (161)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCCcc
Confidence 46899999999999999999999999999966669999999999999999999999999999999999999999997337
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhHH-------HHHHHH
Q psy10513 151 WNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRRTQ-------LYLVDR 223 (239)
Q Consensus 151 ~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~~g-------~ylfDk 223 (239)
|.++.++|+.||++|+.|+..|++|+.+|.+++|++|.+||+|.||.||++++++++++|++|++++ +|+||+
T Consensus 81 ~~~~~e~l~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~~fl~eQ~e~~~~~~~~l~~l~~~~~~~~~~~~yl~D~ 160 (161)
T cd01056 81 WGSGLEALELALDLEKLVNQSLLDLHKLASEHNDPHLADFLESEFLEEQVESIKKLAGYITNLKRVGKPQSGLGEYLFDK 160 (161)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCceeeeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999886 699986
No 7
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=100.00 E-value=2.9e-36 Score=247.95 Aligned_cols=151 Identities=34% Similarity=0.566 Sum_probs=145.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccc
Q psy10513 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQE 150 (239)
Q Consensus 71 s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~ 150 (239)
+++|+++||++|+.|+.|+++|++||.||+ .++++||++||+..|.+||+||.+|++||++|||.|.++.|++|.. +
T Consensus 1 ~~~~~~~Ln~~~~~El~A~~~Yl~~a~~~~--~~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~-~ 77 (156)
T cd01055 1 SEKLEKALNEQINLELYSSYLYLAMAAWFD--SKGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPS-E 77 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCc-c
Confidence 478999999999999999999999999999 5699999999999999999999999999999999999999999875 8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHh
Q psy10513 151 WNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRRTQ-----LYLVDRDL 225 (239)
Q Consensus 151 ~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~~g-----~ylfDk~L 225 (239)
|.++.++|+.+|++|+.++..|.+++++|..++|+.+++||+| ||.+|+++++++++++++++++| +|+||+.|
T Consensus 78 ~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~~-~l~~q~e~~~~~~~~l~~l~~~g~~~~~~~~~d~~l 156 (156)
T cd01055 78 FESLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQW-FVKEQVEEEALARDILDKLKLAGDDGGGLYMLDKEL 156 (156)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHhcccC
Confidence 9999999999999999999999999999999999999999998 99999999999999999999997 89999875
No 8
>PRK10635 bacterioferritin; Provisional
Probab=99.97 E-value=5.4e-30 Score=213.64 Aligned_cols=148 Identities=20% Similarity=0.218 Sum_probs=142.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccc
Q psy10513 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQE 150 (239)
Q Consensus 71 s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~ 150 (239)
+++++++||++++.||.|+++|+.+|.+|+ +||+++++.+|+.+|.||+.||++|++||+.+||.|+++++.+|..
T Consensus 4 ~~~vi~~LN~~L~~El~Ai~QY~~ha~~~~--~~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~-- 79 (158)
T PRK10635 4 DVKIINYLNKLLGNELVAINQYFLHARMFK--NWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLNI-- 79 (158)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC--
Confidence 678999999999999999999999999999 8999999999999999999999999999999999999999988875
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhHH--HHHHHH
Q psy10513 151 WNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRRTQ--LYLVDR 223 (239)
Q Consensus 151 ~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~~g--~ylfDk 223 (239)
..++.++|+.+|++|+.++..|++++.+|.+.+|+.+++||+| ||.++.+|++||++++..++++| .|+--+
T Consensus 80 g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~-iL~dEe~H~~~le~~l~~i~~~G~~~yl~~~ 153 (158)
T PRK10635 80 GEDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMIE-ILADEEGHIDWLETELDLIGKLGLQNYLQSQ 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 4799999999999999999999999999999999999999999 99999999999999999999999 786543
No 9
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=99.96 E-value=2.2e-28 Score=202.35 Aligned_cols=146 Identities=23% Similarity=0.293 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccc
Q psy10513 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQE 150 (239)
Q Consensus 71 s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~ 150 (239)
+++++++||++|+.|+.|+++|+.|+.|+. +|+++|++.||+.+|.||++||++|++||+.+||.|.+..++.|.. .
T Consensus 4 ~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~--~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~-~ 80 (157)
T TIGR00754 4 DPDVIQHLNKQLTNELTAINQYFLHARMQK--NWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRI-G 80 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCC-C
Confidence 578999999999999999999999999996 8999999999999999999999999999999999999999998875 3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhHH--HHHH
Q psy10513 151 WNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRRTQ--LYLV 221 (239)
Q Consensus 151 ~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~~g--~ylf 221 (239)
.++.++|+.++++|+.++..|++++++|.+.+|+.|.+||+| |+.++.+++.+|+.+|..+.++| .|+.
T Consensus 81 -~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~~-~i~eee~h~~~l~~~l~~~~~~g~~~y~~ 151 (157)
T TIGR00754 81 -ETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLEE-ILEDEEEHIDWLETQLELIDKLGLENYLQ 151 (157)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 789999999999999999999999999999999999999999 99999999999999999999999 6764
No 10
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=99.94 E-value=1.4e-25 Score=183.30 Aligned_cols=146 Identities=22% Similarity=0.269 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccc
Q psy10513 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQE 150 (239)
Q Consensus 71 s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~ 150 (239)
++++++.||.+|+.|+.++++|+.++.+|+ ++++++++.||+.+|.+|+.||+.|.+|++.+||.|.+..++.|..
T Consensus 3 ~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~-- 78 (153)
T cd00907 3 DPKVIEALNKALTGELTAINQYFLHARMLE--DWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRI-- 78 (153)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCc--
Confidence 578999999999999999999999999998 7899999999999999999999999999999999999988887764
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhHH--HHHH
Q psy10513 151 WNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRRTQ--LYLV 221 (239)
Q Consensus 151 ~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~~g--~ylf 221 (239)
..++.++|+.+++.|+.++..|++++++|.+.+|+.|.+||++ |+.++.+++.+++.++..++++| .|+-
T Consensus 79 ~~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~-~~~~e~~h~~~l~~~l~~~~~~g~~~~~~ 150 (153)
T cd00907 79 GEDVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEE-ILEDEEEHIDWLETQLDLIDKMGLQNYLQ 150 (153)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 2478999999999999999999999999999999999999999 99999999999999999999999 7764
No 11
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=99.94 E-value=5.8e-26 Score=180.49 Aligned_cols=137 Identities=30% Similarity=0.464 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC-----CCCCCcc
Q psy10513 75 IDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTS-----IEAPSKQ 149 (239)
Q Consensus 75 e~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~-----I~~p~~~ 149 (239)
+++||++++.|+.++++|+.++.+|+ +.+++|+++||+.+|+++++||+++++|++.|||.|.... ++.|..
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~--~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~- 77 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFD--GPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPE- 77 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSS-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhcccc-
Confidence 57999999999999999999999999 8899999999999999999999999999999999665444 556653
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhH
Q psy10513 150 EWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRRT 216 (239)
Q Consensus 150 ~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~~ 216 (239)
|.++.++|+.+++.|+.+...++++++.|.+.+|+.|.+|+++ |+.+|.+++.+|+++|++++||
T Consensus 78 -~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~-~l~~~~~~~~~l~~~l~~l~~~ 142 (142)
T PF00210_consen 78 -WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLDE-FLEEEEKHIWMLQAHLTNLKRM 142 (142)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcC
Confidence 8899999999999999999999999999999999999999988 9999999999999999999986
No 12
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=99.92 E-value=7.4e-24 Score=173.17 Aligned_cols=145 Identities=22% Similarity=0.248 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCcccc
Q psy10513 72 EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEW 151 (239)
Q Consensus 72 ~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~ 151 (239)
+.|+..||+++..||.|.++|+.+|..+. +||+..++++|+++|.+|+.||++++++|++++|.|+++.+.+-.. .
T Consensus 5 ~~Vi~~LN~~L~~EL~ainQYflHsrM~~--~WG~~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~l~i--G 80 (157)
T COG2193 5 PKVIRLLNEALGLELAAINQYFLHSRMYK--NWGLTKLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGKLRI--G 80 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccccc--C
Confidence 68999999999999999999999999999 9999999999999999999999999999999999999999998654 7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhHH--HHHH
Q psy10513 152 NTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRRTQ--LYLV 221 (239)
Q Consensus 152 ~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~~g--~ylf 221 (239)
.++.++|+..|++|+.+...|.+.+..|.+..||++++.|.. .|.++.+|+.||+++|..+.++| .|+-
T Consensus 81 ~tv~E~L~~DL~~E~~a~~~lk~~i~~~e~~~Dyvsrdl~~~-iL~deEEHid~LetqL~li~~iG~~nY~q 151 (157)
T COG2193 81 ETVKEMLEADLALEYEARDALKEAIAYCEEVQDYVSRDLLEE-ILADEEEHIDWLETQLDLIAKIGEENYLQ 151 (157)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH-HHcchHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 799999999999999999999999999999999999999998 99999999999999999999999 6754
No 13
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=99.91 E-value=2.7e-23 Score=167.74 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCcccccc
Q psy10513 74 CIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWNT 153 (239)
Q Consensus 74 ve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~~s 153 (239)
..+.||..+..|+.++++|++||.|+. .+|++|+|+||+.+|.+|+.||.+|++|++.+||.|. .|.. .|++
T Consensus 2 t~~~L~~a~~~E~~a~~~Y~~~a~~a~--~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----~~~~-~~~~ 73 (134)
T cd01041 2 TEKNLLAAFAGESQARNRYTYFAEKAR--KEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----GPPI-GIGD 73 (134)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----CCCC-Ccch
Confidence 357899999999999999999999999 7799999999999999999999999999999999998 4443 7999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q psy10513 154 VEDLLTEALHMEKQ-LNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTV 213 (239)
Q Consensus 154 ~~eale~AL~~Ek~-vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L 213 (239)
+.+.|+.++++|.. ++..|.+++++|.+++|+.+.+|+++ ++.++.+|.+++...|.+|
T Consensus 74 ~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~-i~~~E~~H~~~l~~~l~~l 133 (134)
T cd01041 74 TLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEA-IAEAEKVHAERYKKALENL 133 (134)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHhhcc
Confidence 99999999999995 88999999999999999999999998 9999999999999998875
No 14
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=99.90 E-value=2.4e-22 Score=163.32 Aligned_cols=135 Identities=20% Similarity=0.224 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCC-------
Q psy10513 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSI------- 143 (239)
Q Consensus 71 s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I------- 143 (239)
.+++++.||.+++.|+.++++|+.++.++. ++++.++++||..++.+|++||+.|++|++.+||.|.+...
T Consensus 4 ~~~~~~~Ln~~la~e~~~~~~y~~~~~~~~--g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~ 81 (148)
T cd01052 4 VDELIELLNKAFADEWLAYYYYTILAKHVK--GPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISG 81 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhc
Confidence 467899999999999999999999999999 78999999999999999999999999999999999997553
Q ss_pred ---CCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHH
Q psy10513 144 ---EAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLL 210 (239)
Q Consensus 144 ---~~p~~~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L 210 (239)
+.+. ..+.++.++|+.+++.|+.++..|++++++|.. +|+.|++||+| ||.+|++|+.++.++|
T Consensus 82 ~~~~~~~-~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~-~D~~t~~ll~~-~l~de~~h~~~~~~~~ 148 (148)
T cd01052 82 CKCGYLP-PDPPDVKGILKVNLKAERCAIKVYKELCDMTHG-KDPVTYDLALA-ILNEEIEHEEDLEELL 148 (148)
T ss_pred ccccCCC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHH-HHHHHHHHHHHHHhhC
Confidence 2222 257789999999999999999999999999975 99999999999 9999999999999874
No 15
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=99.84 E-value=1.6e-19 Score=144.41 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCcccccc
Q psy10513 74 CIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWNT 153 (239)
Q Consensus 74 ve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~~s 153 (239)
+++.||.+++.|+.++++|+.||.|++ ..|++++|+||+.+|.+|+.||.++++++ |+ |+ +|
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~--~eG~~~~A~~f~~~a~eE~~HA~~~~~~l---~~------i~-------~~ 63 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQ--REGYPEVAEELKRIAMEEAEHAARFAELL---GK------VS-------ED 63 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHH---hc------Cc-------cc
Confidence 678999999999999999999999999 77999999999999999999999999976 22 11 68
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q psy10513 154 VEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTV 213 (239)
Q Consensus 154 ~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L 213 (239)
+.++|+.++++|+.++..|.+++++|.+++|+.+.+||.+ ++..+..|.+++...|..+
T Consensus 64 ~~~~le~a~~~E~~~~~~~~~~~~~A~~egd~~~~~~~~~-~~~~E~~H~~~~~~~l~~~ 122 (123)
T cd01046 64 TKENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFHE-AAKDEARHGKMLKGLLERY 122 (123)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999 9999999999999988764
No 16
>PRK13456 DNA protection protein DPS; Provisional
Probab=99.77 E-value=2.3e-17 Score=140.27 Aligned_cols=135 Identities=17% Similarity=0.237 Sum_probs=124.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC------
Q psy10513 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIE------ 144 (239)
Q Consensus 71 s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~------ 144 (239)
-++++++||+.++.|+.|.|+|+.+++... ++...+++.||.+.+.||+.||+.|.++|.++||.|.+.+-+
T Consensus 18 ~~~li~lLn~AlA~E~~a~~~Y~~~a~~~~--G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~ 95 (186)
T PRK13456 18 VDKLVELLVKNAAAEFTTYYYYTILRAHLI--GLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISA 95 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhc
Confidence 468899999999999999999999999999 788999999999999999999999999999999999877663
Q ss_pred -----CCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHH
Q psy10513 145 -----APSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLT 211 (239)
Q Consensus 145 -----~p~~~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~ 211 (239)
.|. +++++.++++.+|..|+.....|+++++.+. .+|+.|.+.+.. +|.++++|.++|.++|.
T Consensus 96 ~~~~~~p~--d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~-~kDp~T~~l~~~-IL~dE~eH~~dl~~lL~ 163 (186)
T PRK13456 96 CPDAYLPE--NPTDPKEILKVLLEAERCAIRTYTEICDMTA-GKDPRTYDLALA-ILQEEIEHEAWFSELLG 163 (186)
T ss_pred CccccCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 122 4778999999999999999999999999997 689999999998 99999999999999875
No 17
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=99.47 E-value=1.9e-12 Score=104.57 Aligned_cols=129 Identities=18% Similarity=0.190 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC--------CCCCCc
Q psy10513 77 KINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTS--------IEAPSK 148 (239)
Q Consensus 77 ~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~--------I~~p~~ 148 (239)
.||..++.++..+..|..+.-+.. +.++..+..+|.+.+.++++|+..+++++...||.|..+. ++.+..
T Consensus 2 ~Ln~~lA~~~~~~~~~~~~HW~v~--G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~ 79 (139)
T cd01043 2 ALNQLLADLYVLYLKLKNYHWNVK--GPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPA 79 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCcc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCC
Confidence 689999999999999998766666 8899999999999999999999999999999999998763 655542
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHH
Q psy10513 149 QEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADL 209 (239)
Q Consensus 149 ~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~ 209 (239)
.+.++.++++..++.|..+...++++++.|.+.+|+.|.++|+. ++.+..+++-+|+.+
T Consensus 80 -~~~~~~~~l~~~~~~~~~~i~~~~~~i~~a~~~~D~~t~~ll~~-il~~~ek~~w~l~a~ 138 (139)
T cd01043 80 -GVLSAKEMVAELLEDYETLIEELREAIELADEAGDPATADLLTE-IIRELEKQAWMLRAH 138 (139)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHhc
Confidence 46679999999999999999999999999999999999999998 999998888887754
No 18
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=99.35 E-value=6.3e-11 Score=97.47 Aligned_cols=133 Identities=18% Similarity=0.181 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCC-
Q psy10513 71 HEDCIDKINTQIN---DEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAP- 146 (239)
Q Consensus 71 s~eve~~LN~qIn---~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p- 146 (239)
+++.-..|++++. .|+.|+.+|+..+.... . +.+.+++.|...|.+|+.|+..|.+++..+||.|.+......
T Consensus 11 ~~~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~--~-~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~~ 87 (154)
T cd07908 11 NPRYAELLLDDYAGTNSELTAISQYIYQHLISE--E-KYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSDK 87 (154)
T ss_pred ChHHHHHHHHHhCCcchHHHHHHHHHHHHHHcc--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhcccc
Confidence 5667788888888 99999999999998876 3 689999999999999999999999999999998875432110
Q ss_pred -------CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHH
Q psy10513 147 -------SKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLL 210 (239)
Q Consensus 147 -------~~~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L 210 (239)
......++.++++.++..|+.....|.++... ..|..++.+|.. ++.++.+|+++|..+|
T Consensus 88 ~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~---~~d~~~r~ll~~-I~~eE~~H~~~L~~~l 154 (154)
T cd07908 88 FTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAET---IKDPYIRALLNR-IILDEKLHIKILEELL 154 (154)
T ss_pred CCcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHH-HHHHHHHHHHHHHhhC
Confidence 01134578999999999999999999999885 489999999998 9999999999998764
No 19
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=99.34 E-value=1.1e-10 Score=88.15 Aligned_cols=123 Identities=20% Similarity=0.195 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC-----CCCCCcccc
Q psy10513 77 KINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTS-----IEAPSKQEW 151 (239)
Q Consensus 77 ~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~-----I~~p~~~~~ 151 (239)
+||..+..|+.+...|..++..+. .+++..+|...+.+|+.|+..|.+++..+|+.+.... ...+. ...
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~~~~-~~~ 75 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP-----DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALP-KTS 75 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhcccC-CCc
Confidence 689999999999999999999886 6889999999999999999999999999999887553 11122 256
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHH
Q psy10513 152 NTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADL 209 (239)
Q Consensus 152 ~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~ 209 (239)
.+..+++..++..|......+..+.+.+. |+.+.+++.+ ++.++..|...+..+
T Consensus 76 ~~~~~~l~~~~~~E~~~~~~y~~~~~~~~---d~~~~~~~~~-~~~~E~~H~~~~~~~ 129 (130)
T cd00657 76 DDPAEALRAALEVEARAIAAYRELIEQAD---DPELRRLLER-ILADEQRHAAWFRKL 129 (130)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 78899999999999999999999988774 9999999999 999999999988765
No 20
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=99.06 E-value=1e-08 Score=85.58 Aligned_cols=134 Identities=13% Similarity=0.104 Sum_probs=110.0
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCc
Q psy10513 72 EDCIDKINTQI---NDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSK 148 (239)
Q Consensus 72 ~eve~~LN~qI---n~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~ 148 (239)
+..-.+|.+++ +-|+.|+.+|+..++.+. ..+.+...|...|.||+.|++.|.+.+.++||.+.-.+-..+-.
T Consensus 19 p~~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~----~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw~~~yv 94 (156)
T cd01051 19 PRFAKLLQEQLGGAFGELSAAMQYLFQSFNFR----EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPWTAAYI 94 (156)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCCccc
Confidence 33444555554 369999999999999994 36899999999999999999999999999998443222111111
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q psy10513 149 QEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTV 213 (239)
Q Consensus 149 ~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L 213 (239)
..-+++...|..+++.|+.....+.+++..+ .|+.+.+.|.+ ++.+++.|...++..|..|
T Consensus 95 ~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~---~Dp~v~~~l~~-I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 95 QSSGNLVADLRSNIAAESRARLTYERLYEMT---DDPGVKDTLSF-LLVREIVHQNAFGKALESL 155 (156)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 2235799999999999999999999999987 59999999998 9999999999999998875
No 21
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=99.05 E-value=5.3e-09 Score=82.11 Aligned_cols=125 Identities=22% Similarity=0.219 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccccCCCC-------CC
Q psy10513 76 DKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRG--GQLRLTSIE-------AP 146 (239)
Q Consensus 76 ~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RG--G~v~l~~I~-------~p 146 (239)
++||..|..|+.+...|..++..+. -+++..+|...|.+|+.|+..|...+..+| +.|.+.... .+
T Consensus 1 ~~l~~a~~~E~~~~~~Y~~~a~~~~-----~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (139)
T cd01045 1 EILALAIKMEEEAAEFYLELAEKAK-----DPELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEP 75 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhh
Confidence 3689999999999999999999987 238999999999999999999999999987 333322110 00
Q ss_pred ----CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHH
Q psy10513 147 ----SKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADL 209 (239)
Q Consensus 147 ----~~~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~ 209 (239)
......+..++++.++..|+.....|..+.+. ..|+.+..++.. ++.++.+|.+.|.++
T Consensus 76 ~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~---~~d~~~~~~~~~-l~~~E~~H~~~l~~~ 138 (139)
T cd01045 76 EFKKALESLMDPLEALRLAIEIEKDAIEFYEELAEK---AEDPEVKKLFEE-LAEEERGHLRLLEEL 138 (139)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 00135678999999999999999988888765 478899999998 999999999999875
No 22
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=98.93 E-value=5.5e-08 Score=76.38 Aligned_cols=127 Identities=22% Similarity=0.265 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC-------CC--
Q psy10513 76 DKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIE-------AP-- 146 (239)
Q Consensus 76 ~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~-------~p-- 146 (239)
+.|+..|..|..+...|..+|..+. +.+ |.+.+.|...|.+|..|+..|.+.+..+++.+...... .+
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~--~~~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAK--DEG-PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKL 77 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HTT-HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhh--hcc-cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchh
Confidence 4688999999999999999999999 446 88999999999999999999999999988755432111 11
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHH
Q psy10513 147 SKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADL 209 (239)
Q Consensus 147 ~~~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~ 209 (239)
....-.++..+++.++..|+.....+..+.. ...|+....+|.+ ++.++.+|.+.|..+
T Consensus 78 ~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~a~---~~~~~~~~~~~~~-l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 78 EEETDENLEEALEMAIKEEKDAYEFYAELAR---KAPDPEIRKLFEE-LAKEEKEHEDLLEKL 136 (137)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTHHHHHHHHHH---HTTSHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 0001125889999999999998888887755 4589999999998 999999999998864
No 23
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=98.85 E-value=3.4e-07 Score=75.43 Aligned_cols=134 Identities=18% Similarity=0.232 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhH-HHHHHHHHHHH-HHHHHHHHHHHHHcCCccc-----cCCCC
Q psy10513 72 EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGF-AKFFTHSYKEE-IEHMEHLIAYLNKRGGQLR-----LTSIE 144 (239)
Q Consensus 72 ~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~-A~fF~~~A~EE-~eHA~kLi~yl~~RGG~v~-----l~~I~ 144 (239)
.++++.|-...+.|+.+.|-|...++... |+.|- .+.|.+.|.+| +.|++.|..+|...||.+. |.+|.
T Consensus 16 ~kli~~Llka~AaE~tt~YYYtilr~~l~----Gle~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dIS 91 (172)
T COG2406 16 DKLIELLLKAAAAEWTTYYYYTILRYALK----GLEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDIS 91 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhc
Confidence 46778888888999999999999988776 34432 45555555554 6699999999999999872 33443
Q ss_pred ---C-CCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHH
Q psy10513 145 ---A-PSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLT 211 (239)
Q Consensus 145 ---~-p~~~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~ 211 (239)
. |-..+|.++.+.++.+++.|+.....+.+|..+. ..+|+.|.++-+. +|.|+++|..|+-.+|.
T Consensus 92 gC~~a~LPedp~D~~~~l~vlv~AE~CAir~ykeic~~T-~GkDprTyeLa~~-IL~eEi~hr~~~~~ll~ 160 (172)
T COG2406 92 GCKPAYLPEDPYDIDEILAVLVKAERCAIRAYKEICNLT-AGKDPRTYELAEA-ILREEIEHRTWFLELLG 160 (172)
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHccc-cCCCcchHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 2 2224799999999999999999999999999987 6689999999998 99999999999987764
No 24
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=98.84 E-value=3.9e-07 Score=76.36 Aligned_cols=133 Identities=11% Similarity=0.113 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc--------cCC
Q psy10513 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLR--------LTS 142 (239)
Q Consensus 71 s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~--------l~~ 142 (239)
...+.+.||..+..++.....|..+.-+.. +..+..+..+|.+++.++++|+..+.+++...||.|. ...
T Consensus 20 ~~~~~~~Ln~~LA~~~~l~~k~~~~hW~v~--G~~f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~~t~~e~~~~s~ 97 (162)
T PRK09448 20 KKATIELLNQQLAQFIDLSLITKQAHWNMK--GANFIAVHEMLDGFRTALEDHLDTMAERAVQLGGVALGTTQVVASKTP 97 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcc--CCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCCCHHHHHHhCC
Confidence 356889999999999999999998776666 7789999999999999999999999999999999985 345
Q ss_pred CCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHH
Q psy10513 143 IEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLL 210 (239)
Q Consensus 143 I~~p~~~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L 210 (239)
|+.... .+-+..++++..++.-..+...+++.+ .+.+|+.|.++|.. ++.+..+.+-.|+.++
T Consensus 98 i~e~~~-~~~~~~~~l~~l~~d~~~~~~~~r~~i---~e~~D~~T~dll~~-~~~~~eK~~WmL~a~l 160 (162)
T PRK09448 98 LKSYPL-DIHNVQDHLKALADRYAIVANDVRKAI---DEAGDEDTADIFTA-ASRDLDKFLWFIEAHI 160 (162)
T ss_pred CCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHH---hhcCChhHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 554222 343678999999999999999999998 67789999999998 8988888887777665
No 25
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=98.53 E-value=1.2e-05 Score=67.33 Aligned_cols=133 Identities=19% Similarity=0.225 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc--------cCCC
Q psy10513 72 EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLR--------LTSI 143 (239)
Q Consensus 72 ~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~--------l~~I 143 (239)
..+.+.||.+++.=......... ++..-.+..+.-+-.+|..+..+-.+|...+.++++..||.|. ...|
T Consensus 14 ~~~~~~Ln~~lAd~~~Ly~k~~~--~HWnV~G~~F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~~t~~~~~~~s~i 91 (156)
T COG0783 14 KKIAEALNQLLADLYVLYLKTHN--YHWNVKGPNFFALHEKLEELYEELAEHVDEIAERIRALGGVPLGTLSEYLKLSSI 91 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--cccceeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHhCCC
Confidence 67888888888764444433333 2333236677778999999999999999999999999999885 4455
Q ss_pred CCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHH
Q psy10513 144 EAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADL 209 (239)
Q Consensus 144 ~~p~~~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~ 209 (239)
+..+. + .+..++++..++--..+.+.+++.+.+|.+.+|..|.+++.. ++.+..+.+=.|+-+
T Consensus 92 ke~~~-~-~~~~~~l~~l~~~~~~l~~~~r~~~~~a~e~gD~~Tadl~~~-~~~~~EK~~Wml~a~ 154 (156)
T COG0783 92 KEEPG-D-YTAREMLKELVEDYEYLIKELRKGIELADEAGDEVTADLLTD-IIRELEKTLWMLRAT 154 (156)
T ss_pred cccCC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHH-HHHHHHHHHHHHHHh
Confidence 55543 4 789999999999999999999999999999999999999998 888877776555543
No 26
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=1.3e-05 Score=68.12 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=113.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc----------
Q psy10513 70 FHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLR---------- 139 (239)
Q Consensus 70 ~s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~---------- 139 (239)
....++++|+..|..|+.|...|..+|..+... -+.+.|...|.+|+.|...|-+.+.++++...
T Consensus 21 ~~~~~~e~L~~Ai~~E~eA~~fY~~lae~~~~~-----~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~ 95 (176)
T COG1633 21 KELSIEELLAIAIRGELEAIKFYEELAERIEDE-----EIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIE 95 (176)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchh
Confidence 345789999999999999999999999999953 58999999999999999999999999998762
Q ss_pred ---cCCCCCC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhh
Q psy10513 140 ---LTSIEAP-SKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRR 215 (239)
Q Consensus 140 ---l~~I~~p-~~~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~ 215 (239)
+..+++. ....-.+..+++..|+..|+.....|..+.... .|.....++.+ ++.+.-.|..++...++.+-+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~---~~~~~~~~~~~-~a~~E~~H~~~l~~~~~~~~~ 171 (176)
T COG1633 96 SEILEYLQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLDEL---VNEEAKKLFKT-IADDEKGHASGLLSLYNRLTS 171 (176)
T ss_pred hhhccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHc---cCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 2222220 111345799999999999999999999887754 67778889998 999999999999998887765
Q ss_pred H
Q psy10513 216 T 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 172 ~ 172 (176)
T COG1633 172 T 172 (176)
T ss_pred c
Confidence 4
No 27
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=98.50 E-value=5.9e-06 Score=65.89 Aligned_cols=117 Identities=19% Similarity=0.106 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCc------cc
Q psy10513 77 KINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSK------QE 150 (239)
Q Consensus 77 ~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~------~~ 150 (239)
.+|..++.|..+..+|..+|.... =+...+.|...|.+|+.|+..|-+++..+|+.|. .+.... ..
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~~~-----~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 73 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKREK-----DPENREILLKLAEDERRHAEFWKKFLGKRGVPPP---RPKLKIFFYKLLAR 73 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---CccHHHHHHHHHHH
Confidence 478999999999999999999886 2458999999999999999999999999998875 111100 12
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHH
Q psy10513 151 WNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLT 211 (239)
Q Consensus 151 ~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~ 211 (239)
+.++..+++.+...|+.....|.++... ...+.. ++.|+.+|++.|..+++
T Consensus 74 ~~g~~~~l~~~~~~E~~ai~~Y~~~~~~---------~~~~~~-Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 74 IFGPTFVLKLLERGEERAIEKYDRLLEE---------RPELKE-IIADELEHEEVLIALLD 124 (125)
T ss_pred HHhHHHHHHHHHHhHHhhHhhHHhhhhh---------hHHHHH-HHHHHHHHHHHHHHhhh
Confidence 3345678888889999999999988776 457776 99999999999988765
No 28
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.25 E-value=6e-05 Score=79.08 Aligned_cols=190 Identities=17% Similarity=0.153 Sum_probs=134.8
Q ss_pred CCCCCCcCCCCCCCCcccCccccCcc-----ccccCCCCCCC-CCCCCCCCCccccchhh-chHHHHHHHHHHHHHHHHH
Q psy10513 16 KDKPKCESTRHEPTKENKPCKETKPK-----SKKSSEPTQSS-QHSPDSLGKTERQTLQN-FHEDCIDKINTQINDEIRS 88 (239)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~s~~rqn-~s~eve~~LN~qIn~EL~A 88 (239)
-.-|||--|- |-..+.--|+...-| --|+|+-..-. +--|.-.|+....-|-. =.+...+.|--.|.+|..+
T Consensus 797 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eil~~Ai~mE~~g 875 (1006)
T PRK12775 797 ATCPKCHRPL-EGDEEYVCCATSELQWRCDDCGKVSEGFAFPYGMCPACGGKLQALDRRKVEDAAALEAIRTAFEIELGG 875 (1006)
T ss_pred ccCcccCCCC-CCCceeEEecCcceeeehhhhccccccccCCcCcCcccccchhhhhccCcccccHHHHHHHHHHHHHHH
Confidence 3457887776 555555556543322 23555554443 55666666655433332 2366788999999999999
Q ss_pred HHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--cc--cC--CCCCCCccccccHHHHHHHHH
Q psy10513 89 AYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQ--LR--LT--SIEAPSKQEWNTVEDLLTEAL 162 (239)
Q Consensus 89 s~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~--v~--l~--~I~~p~~~~~~s~~eale~AL 162 (239)
...|..+|.-.. -+.+.++|...|.+|++|+..|.+....--.. -. +. .+.......+.+..++|+.|+
T Consensus 876 ~~FY~~~A~~a~-----~~~~K~lF~~LA~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lAm 950 (1006)
T PRK12775 876 MAFYARAAKETS-----DPVLKELFLKFAGMEQEHMATLARRYHAAAPSPTEGFKIERAAIMAGVKGRPDDPGNLFRIAI 950 (1006)
T ss_pred HHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhhhhhhhccccCCHHHHHHHHH
Confidence 999999999765 47899999999999999999998886431000 00 00 000111112456899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCChH-HHHHhHHHhHHHHHHHHHHHHHHHHHHhh
Q psy10513 163 HMEKQLNEKLLKLHACASQHGDAN-LTDFLEGRYLQEQVDAIKTLADLLTTVRR 215 (239)
Q Consensus 163 ~~Ek~vt~~l~~L~~lA~~~~D~~-t~~FLe~~fL~EQve~i~~L~~~L~~L~~ 215 (239)
..|+....-|.++.+.+ .|.. ...+++. +.+|+.+|++.|..+++.++.
T Consensus 951 ~~Ekdai~fY~~la~~~---~d~e~~k~l~~~-LA~EEk~Hl~~L~~~~d~~~~ 1000 (1006)
T PRK12775 951 EFERRAVKFFKERVAET---PDGSVERQLYKE-LAAEEREHVALLTTEFERWKQ 1000 (1006)
T ss_pred HHHHHHHHHHHHHHhhC---CChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999887754 6765 6899998 999999999999999998874
No 29
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=98.05 E-value=0.00019 Score=60.62 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCcccccc
Q psy10513 74 CIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWNT 153 (239)
Q Consensus 74 ve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~~s 153 (239)
.++.|-+...-|-.|...|+.||...+ .-|++.+|+.|+..|.+|..||..+++.+...+ . .+++
T Consensus 5 t~~~L~~aF~GEs~a~~rY~~~A~~A~--~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~~~-----------~--~~~~ 69 (166)
T COG1592 5 TEENLRKAFAGESMAVMRYLIFAKVAE--EEGYPEIARLFRAIAEAEAVHAKNHLKLLGKLL-----------L--VLGD 69 (166)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----------c--cccc
Confidence 456677777888999999999999999 459999999999999999999999999987655 1 4678
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q psy10513 154 VEDLLTEALHMEKQLNEKLL-KLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVR 214 (239)
Q Consensus 154 ~~eale~AL~~Ek~vt~~l~-~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~ 214 (239)
+.+-++.+++-|..-..... .....|...++-....++.+ ....+..|.+.+...|+.++
T Consensus 70 ~~eNl~~aieGE~~e~~emyp~~ae~A~~~g~~~~a~~f~~-~~~~Ek~H~~~~~~~Le~~~ 130 (166)
T COG1592 70 TRENLEEAIEGETYEITEMYPVFAEVAEEEGFKEAARSFRA-AAKAEKRHAEMFRGLLERLE 130 (166)
T ss_pred HHHHHHHHHccchHHHHHhChHHHHHHHHcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Confidence 88888899887766554444 88889999998888899998 88889999999999998874
No 30
>PF13668 Ferritin_2: Ferritin-like domain
Probab=97.96 E-value=0.0013 Score=52.73 Aligned_cols=130 Identities=18% Similarity=0.141 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC---CccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-cCCCCCCCccc
Q psy10513 75 IDKINTQINDEIRSAYTYISMASFCTQD---NVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLR-LTSIEAPSKQE 150 (239)
Q Consensus 75 e~~LN~qIn~EL~As~~YlsmA~~f~~~---~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~-l~~I~~p~~~~ 150 (239)
.+.||-.++.|+.+...|...+.-+... ...=+.+-.+|+..+..|+.|+..|-+.+. |+.+. -+.+.-+. +.
T Consensus 3 ~~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~~~~~~~~~~-~~ 79 (137)
T PF13668_consen 3 LDILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPVPPPAYDFPF-DP 79 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCcccccc-CC
Confidence 3679999999999999999888755211 123355678899999999999999999887 66653 11222222 35
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHH
Q psy10513 151 WNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLT 211 (239)
Q Consensus 151 ~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~ 211 (239)
|.+....+..|+..|......|..+.... .|+.+...+.. ++..+.+|..+++.+|.
T Consensus 80 ~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~---~~~~~~~~~~~-i~~~Ea~H~~~ir~ll~ 136 (137)
T PF13668_consen 80 FTDDASFLRLAYTLEDVGVSAYKGAAPQI---EDPELKALAAS-IAGVEARHAAWIRNLLG 136 (137)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999988755 68889999988 99999999999998764
No 31
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=97.46 E-value=0.0049 Score=52.03 Aligned_cols=120 Identities=11% Similarity=0.085 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCc-------cccccHH
Q psy10513 83 NDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSK-------QEWNTVE 155 (239)
Q Consensus 83 n~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~-------~~~~s~~ 155 (239)
.-|+.|..+|..-++.+. .+.+..++.+.+.+|..|-..|-+++..+|++|.+-.--.... ...-...
T Consensus 10 AGE~gA~~IY~gQ~~~~~-----~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~~~gf~lG~~tal~G~~ 84 (165)
T cd01042 10 AGEVGAVRIYRGQLAVAR-----DPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWYVAGFALGALTALLGKK 84 (165)
T ss_pred cchHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhChH
Confidence 358999999999999887 3899999999999999999999999999999986432110000 0112355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHH
Q psy10513 156 DLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLAD 208 (239)
Q Consensus 156 eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~ 208 (239)
-+|....+.|..|...|++-.+.-....|..+.+.|+. |..|+++|-+.-..
T Consensus 85 ~a~~~~~avE~~V~~Hy~~ql~~L~~~~d~~l~~~l~~-~r~DE~~H~d~A~~ 136 (165)
T cd01042 85 AAMACTAAVETVVEEHYNDQLRELPAQPDKELRAIIEQ-FRDDELEHADIAEE 136 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 67888899999999999988876544459999999997 99999999876543
No 32
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=97.12 E-value=0.014 Score=47.66 Aligned_cols=124 Identities=16% Similarity=0.075 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC-CCCCCcccccc
Q psy10513 75 IDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTS-IEAPSKQEWNT 153 (239)
Q Consensus 75 e~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~-I~~p~~~~~~s 153 (239)
++.||++|.....+..-|-..+...+ -+.+..+|...+.+-..|+..|-.++...||.|.-.. +..--+..|.+
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aae~v~-----~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~w~~ 76 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESAEEVK-----DPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQFWGK 76 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 67899999999999999999998775 4789999999999999999999999999999886321 11111124543
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHH
Q psy10513 154 ---------VEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTL 206 (239)
Q Consensus 154 ---------~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L 206 (239)
-..+|+.+..-|..+...|.++.+-. .-++.+...|.. -+.+-..+.+++
T Consensus 77 lks~~~~~~d~aiL~~~e~gEd~~~~~y~~aL~~~--~l~~~~r~~l~~-q~~~i~~~~d~i 135 (139)
T TIGR02284 77 IRATLTPNDDYVVLEEAERGEDRAKKAYDETLADQ--DTPAAARDVALR-QYPGVRACHDVI 135 (139)
T ss_pred HHHHHcCCChHHHHHHHHHhHHHHHHHHHHHHhcC--CCChHHHHHHHH-HHHHHHHHHHHH
Confidence 33466777777877777777766532 257777777666 333333333333
No 33
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=97.11 E-value=0.039 Score=44.72 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCc-------
Q psy10513 76 DKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSK------- 148 (239)
Q Consensus 76 ~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~------- 148 (239)
+.|.-.+..|..|-.+|..++-.|. .-.-|...|..|.+|...|...+...|......+.. +..
T Consensus 3 ~~L~~Ale~Ek~a~~~Y~~~~~k~~--------~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p~~~~~-~~~f~~~~~~ 73 (135)
T cd01048 3 AALLYALEEEKLARDVYLALYEKFG--------GLRPFSNIAESEQRHMDALKTLLERYGLPDPVDPFS-GGVFTNPQYN 73 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--------CcchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccc-cccccchhHH
Confidence 5678889999999999999998773 356788889999999999988887766543221111 000
Q ss_pred ----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHH
Q psy10513 149 ----QEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTL 206 (239)
Q Consensus 149 ----~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L 206 (239)
....|..++++.++..|+.-...|.++..-+ .|..+...+.. +.....+|.+-+
T Consensus 74 ~l~~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~~---~d~d~k~v~~~-L~~~e~~H~~~f 131 (135)
T cd01048 74 QLVEQGPKSLQDALEVGVLIEELDIADYDRLLERT---QNPDIRDVFEN-LQAASRNHHLPF 131 (135)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhc---ccHHHHHHHHH-HHHHHHHHHHHH
Confidence 1244799999999999999998888887755 67889999987 777777776644
No 34
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=96.71 E-value=0.16 Score=47.44 Aligned_cols=169 Identities=14% Similarity=0.141 Sum_probs=117.8
Q ss_pred cCCCCCCCCCCCCCCCCcc-------ccchhhchHHHHHH-HHHHHHHHHHHHHHHHHHHHhccc---CCccchhHHHHH
Q psy10513 45 SSEPTQSSQHSPDSLGKTE-------RQTLQNFHEDCIDK-INTQINDEIRSAYTYISMASFCTQ---DNVALFGFAKFF 113 (239)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~-------s~~rqn~s~eve~~-LN~qIn~EL~As~~YlsmA~~f~~---~~v~l~G~A~fF 113 (239)
+...=|.+|--|++.|... ......++..+..+ +-..|..+---+|.- .++.+|.. ++....+.+.|.
T Consensus 26 ~~~~W~PhD~lP~~~~~~F~~~~~~w~~~~~~Lpd~~~~alv~~llTEd~LPsY~~-~l~~~~~~~~~~ga~~~~W~~wv 104 (330)
T PF03405_consen 26 VEKDWQPHDFLPWSEGRNFFLGGKDWRPSQSTLPDDARVALVGNLLTEDNLPSYHR-ELATLFGVRDEDGASDSPWGRWV 104 (330)
T ss_dssp CGGS--GGGGS-GCCSTTHHHCCHHHHHHHHTS-HHHHHHHHHHHHHHHTHHHHHH-HHTTSTTT--SSSS--SHHHHHH
T ss_pred HhhCCCccccCCCCccccHhHhcccCCHhhccCCHHHHHHHHHHHHhhhhhhHHHH-HHHhhcCccccCCCCCCcHHHHc
Confidence 3445567777889888775 22233677777544 445555554444432 33455543 122256789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCc--------ccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy10513 114 THSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSK--------QEW-NTVEDLLTEALHMEKQLNEKLLKLHACASQHGD 184 (239)
Q Consensus 114 ~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~--------~~~-~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D 184 (239)
.....||-.||.-|-+||.-.| .|+...+..-.. ..+ .++...|-...-.|+.-.-+..++.++|...+|
T Consensus 105 ~~WTAEEnRHg~~L~~YL~vsg-~vDp~~lE~~r~~~i~~G~~~~~~~~p~~~~vYtsfQE~AT~vsh~n~~~~a~~~~D 183 (330)
T PF03405_consen 105 GRWTAEENRHGDALRDYLYVSG-RVDPVALERTRMYLITAGFDPGFESDPYLGFVYTSFQERATQVSHRNTGRLAKQAGD 183 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-SS-CCCCCHCCHHHHHH----S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccccccccccHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999997755 566555553211 123 357889999999999999999999999999999
Q ss_pred hHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhH
Q psy10513 185 ANLTDFLEGRYLQEQVDAIKTLADLLTTVRRT 216 (239)
Q Consensus 185 ~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~~ 216 (239)
+.+...+.. +-.++..|......++..+=.+
T Consensus 184 pvL~~il~~-IA~DE~rH~~fy~~iv~~~l~~ 214 (330)
T PF03405_consen 184 PVLAQILGR-IAADEARHEAFYRNIVEAYLEL 214 (330)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-HHhhHHHHHHHHHHHHHHHHhh
Confidence 999999998 9999999999999998877544
No 35
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=96.54 E-value=0.28 Score=45.13 Aligned_cols=167 Identities=16% Similarity=0.135 Sum_probs=115.7
Q ss_pred CCCCCCCCCCCCCCCCcc-------ccchhhchHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccCCccchhHHHHHHHHH
Q psy10513 46 SEPTQSSQHSPDSLGKTE-------RQTLQNFHEDCIDKINTQINDEIRSAYTYI-SMASFCTQDNVALFGFAKFFTHSY 117 (239)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~-------s~~rqn~s~eve~~LN~qIn~EL~As~~Yl-smA~~f~~~~v~l~G~A~fF~~~A 117 (239)
...=|..|--|++.|... ......+++....+|--.+-.| .+.=.|. .++.+|..++..-+++++|.....
T Consensus 25 ~~~W~p~d~lP~~~~~~f~~~~~~~~~~~~~L~~~~~~~l~~~~itE-d~LP~Y~~~L~~~f~~~~~~~~~w~~w~~~Wt 103 (297)
T cd01050 25 EKDWQPHDFLPDSASEDFDLDVKELRERAAELPDDARVALVGNLLTE-EALPTYHSMLNRLFGLDDESPTAWARWVRRWT 103 (297)
T ss_pred hhccCCcccCCCCCCCChhhccccCchhhccCCHHHHHHHHHHHHHh-hccHHHHHHHHHHcCcccccccHHHHHHHHHh
Confidence 344455666677755543 2222357777766665555555 2222333 334555433224478999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCCCC---------ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHH
Q psy10513 118 KEEIEHMEHLIAYLNKRGGQLRLTSIEAPS---------KQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLT 188 (239)
Q Consensus 118 ~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~---------~~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~ 188 (239)
.||-.|+.-|-+|+..- |.+....+..-. ...-.++...|-...-.|+.-.-.+..+.++|. .+|+.+.
T Consensus 104 aEE~rHg~aL~~YL~~s-g~vdp~~le~~~~~~~~~G~~~~~~~~~~~~~~y~~fqE~aT~v~y~nl~~~a~-~gdPvL~ 181 (297)
T cd01050 104 AEENRHGDLLNKYLYLT-GRVDPRALERTRQYLIGSGFDPGTDNSPYRGFVYTSFQELATRISHRNTARLAG-AGDPVLA 181 (297)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHH
Confidence 99999999999999875 445433332110 001224668888888999999999999999998 8999999
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHhhH
Q psy10513 189 DFLEGRYLQEQVDAIKTLADLLTTVRRT 216 (239)
Q Consensus 189 ~FLe~~fL~EQve~i~~L~~~L~~L~~~ 216 (239)
..+.. +-.++..|.....+++..+-..
T Consensus 182 ~i~~~-IA~DE~rH~~fy~~~v~~~le~ 208 (297)
T cd01050 182 KLLGR-IAADEARHEAFYRDIVEALFEL 208 (297)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 99998 9999999999999998876543
No 36
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=96.50 E-value=0.013 Score=45.27 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC-CCcccc
Q psy10513 73 DCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEA-PSKQEW 151 (239)
Q Consensus 73 eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~-p~~~~~ 151 (239)
+++..||..|.....+...|-.++.-+. =+.+..+|.+.+.+-..|+..|-.+|...||.|.-..--. -....|
T Consensus 1 ~~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~-----~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~gs~~g~~~r~~ 75 (111)
T PF09537_consen 1 ETIEALNDLLKGLHDGIEGYEKAAEKAE-----DPELKSLFQEFAQERQQHAEELQAEIQELGGEPEESGSFKGALHRAW 75 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H----HHCHHHH-TT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcccCHHHHHHHHH
Confidence 4678999999999999999999999888 2789999999999999999999999999999885332111 001133
Q ss_pred ccHH---------HHHHHHHHHHHHHHHHHHHH
Q psy10513 152 NTVE---------DLLTEALHMEKQLNEKLLKL 175 (239)
Q Consensus 152 ~s~~---------eale~AL~~Ek~vt~~l~~L 175 (239)
.++. .+++.+..-|..+...|.++
T Consensus 76 ~~ik~~~~~~d~~aiL~~~~~gE~~~~~~y~~a 108 (111)
T PF09537_consen 76 MDIKSALGGDDDEAILEECERGEDMALEAYEDA 108 (111)
T ss_dssp THHHHS-----H---------------------
T ss_pred HHHHHHhcCCCccchhhhhhhhhhhhhhhcccc
Confidence 3322 26666666666666665544
No 37
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=96.50 E-value=0.13 Score=43.77 Aligned_cols=128 Identities=11% Similarity=0.104 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC-CCCCCc------
Q psy10513 76 DKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTS-IEAPSK------ 148 (239)
Q Consensus 76 ~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~-I~~p~~------ 148 (239)
..|----.-|+.|..+|..-...+.. .+.+..++.+..++|..|-..|-+.+..+|.+|.+-. +=....
T Consensus 5 r~lRVdHAGE~~A~~iY~gQ~~~~~~----~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~~~g~~LG~~ 80 (172)
T PF03232_consen 5 RILRVDHAGEVGAVRIYRGQLAVARR----DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLWYVAGFALGAL 80 (172)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 34444456799999999999888873 7889999999999999999999999999998875321 100000
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCChHHHHHhHHHhHHHHHHHHHHHHH
Q psy10513 149 QEWNTVEDLLTEALHMEKQLNEKLLKLHACASQ---HGDANLTDFLEGRYLQEQVDAIKTLAD 208 (239)
Q Consensus 149 ~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~---~~D~~t~~FLe~~fL~EQve~i~~L~~ 208 (239)
.-.-...-++...-+.|..|...|++-++.-.. ..|..+.+.|.. |..|+.+|.+.-..
T Consensus 81 tal~G~~~~~a~t~avE~~V~~Hy~~Ql~~L~~~~~~~d~~l~~~i~~-~r~DE~~H~d~A~~ 142 (172)
T PF03232_consen 81 TALLGDKAAMACTAAVETVVEEHYNDQLRELPAMGEEEDPELRAIIEQ-FRDDELEHRDTAIE 142 (172)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 001124456777788999999999988876653 689999999998 99999999876544
No 38
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=95.86 E-value=0.87 Score=37.85 Aligned_cols=138 Identities=20% Similarity=0.202 Sum_probs=106.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC----
Q psy10513 70 FHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEA---- 145 (239)
Q Consensus 70 ~s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~---- 145 (239)
+..-.+..|.+....|-++.-.+-.|+.-.. -|.+..-|..+..+-+.|..+|-.-+...|+.|.-..-+.
T Consensus 2 l~~~~~~~L~d~y~aE~q~~~~l~~~~~~a~-----~~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl 76 (159)
T PF05974_consen 2 LRDLFIDELRDLYSAEKQLLKALPKLAEAAS-----SPELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGL 76 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHH
Confidence 3455678899999999999999999998776 2889999999999999999999999999999884211000
Q ss_pred ------CCcc--ccccHHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q psy10513 146 ------PSKQ--EWNTVED--LLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTV 213 (239)
Q Consensus 146 ------p~~~--~~~s~~e--ale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L 213 (239)
.... .-..+.+ .+..+...|..-...|..|+.+|..-++....+.|+. -|.|+...-.+|..+...+
T Consensus 77 ~~e~~~~~~~~~~d~~~~D~~li~a~q~~ehyeIA~Y~tL~~~A~~lG~~e~a~lL~~-~L~EE~~~~~~L~~~a~~~ 153 (159)
T PF05974_consen 77 VAEAQELIEEFAEDPAVKDAALIAAAQKVEHYEIAAYGTLIALAKQLGDEEAAQLLEQ-NLDEEEAADEKLTQLAESI 153 (159)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHH-HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhcccCCchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 0000 0011333 3467788999999999999999999999999999998 8999999999998887543
No 39
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=95.03 E-value=0.4 Score=43.13 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCcccccc
Q psy10513 74 CIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWNT 153 (239)
Q Consensus 74 ve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~~s 153 (239)
-..+|....+.||+|...++-..+-|.. +.... |-.=|.+.|.||-.|...+.+++...|. .+.+++.... -|..
T Consensus 67 r~~llHaiAhIE~~AIdLa~Da~~RF~~-~lP~~-f~~D~~~va~dEarHf~ll~~rL~~lG~--~yGd~P~h~g-Lw~~ 141 (253)
T PF04305_consen 67 RAALLHAIAHIELNAIDLALDAIYRFHP-NLPRE-FYDDWLRVADDEARHFRLLRERLEELGS--DYGDLPAHDG-LWEA 141 (253)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHhc-cCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCcchhhH-HHHH
Confidence 4577888889999999999999998921 32332 2223346789999999999999999994 6667766552 3543
Q ss_pred HHHH-------HH-HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q psy10513 154 VEDL-------LT-EALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTV 213 (239)
Q Consensus 154 ~~ea-------le-~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L 213 (239)
.... |. .-+-+|..--..--.+++.-...+|..+...|+- ++.|+|.|++.=...+..+
T Consensus 142 ~~~t~~dl~~R~A~vp~~~EArGLD~~p~~~~k~~~~gD~~sa~iL~~-I~~DEi~HV~~G~rWf~~~ 208 (253)
T PF04305_consen 142 AEQTAHDLLARMALVPRVLEARGLDVTPFIIEKFRSAGDEESAAILEI-ILRDEIGHVAIGNRWFRYL 208 (253)
T ss_pred HHHhccCHHHHHHHHHHHHHhhCCCCCHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHhhHHHHHHH
Confidence 2221 11 1134555444444455555667799999999997 9999999986544444444
No 40
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=94.31 E-value=1.1 Score=41.07 Aligned_cols=139 Identities=14% Similarity=0.195 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC------
Q psy10513 71 HEDCIDKINTQIN---DEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLT------ 141 (239)
Q Consensus 71 s~eve~~LN~qIn---~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~------ 141 (239)
++..-.+|-+|+. -||.++.+|+.-++-|... . -+-..+...+.||+.|.+-|..-|.++-..+...
T Consensus 18 DP~~A~~LqeqlGG~~GElsaamqYl~Q~~~~~~~--~--~~kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~~ 93 (283)
T PF05067_consen 18 DPRFAKLLQEQLGGPFGELSAAMQYLFQSFNMRGP--E--KYKDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEAA 93 (283)
T ss_dssp -HHHHHHHCHHHHSTTSHHHHHHHHHHHHHH-SST--T--TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHHH
T ss_pred CHHHHHHHHHHhcCCcchHHHHHHHHHHhhcCCCc--h--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhhc
Confidence 4556667777774 6999999999999999832 1 1358999999999999998877665543322111
Q ss_pred -------CCC---------------CCC-c--ccc--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHH
Q psy10513 142 -------SIE---------------APS-K--QEW--------NTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLT 188 (239)
Q Consensus 142 -------~I~---------------~p~-~--~~~--------~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~ 188 (239)
.+. .|. . .-| +++..-|...++.|....-.+.+|+.+. .|+...
T Consensus 94 ~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~~sGdl~aDL~~NiaAE~~AR~~yerL~~mT---dDpgvk 170 (283)
T PF05067_consen 94 PGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQASGDLIADLRSNIAAEQRARLQYERLYEMT---DDPGVK 170 (283)
T ss_dssp GGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG----S-HHHHHHHHHHHHHHHHHHHHHHHTT------HHHH
T ss_pred ccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhc---CCccHH
Confidence 000 010 0 123 4588899999999999999999999976 799999
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHhhHH
Q psy10513 189 DFLEGRYLQEQVDAIKTLADLLTTVRRTQ 217 (239)
Q Consensus 189 ~FLe~~fL~EQve~i~~L~~~L~~L~~~g 217 (239)
+.|.. .+.-.+-|...+..-|..|..-.
T Consensus 171 d~L~F-Ll~Re~vH~~~f~~ALe~l~~~~ 198 (283)
T PF05067_consen 171 DMLSF-LLAREIVHQQQFGKALEELQENF 198 (283)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhhC
Confidence 99987 78888888888888877776543
No 41
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=93.88 E-value=0.39 Score=40.87 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=54.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhh
Q psy10513 152 NTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRR 215 (239)
Q Consensus 152 ~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~ 215 (239)
.++.+++..|+.+|.....-|.++++.+ .|..+..++++ +..++.+|.+++..++.++..
T Consensus 23 ~~~~e~L~~Ai~~E~eA~~fY~~lae~~---~~~~~rk~~~~-la~eE~~H~~~f~~l~~~~~~ 82 (176)
T COG1633 23 LSIEELLAIAIRGELEAIKFYEELAERI---EDEEIRKLFED-LADEEMRHLRKFEKLLEKLTP 82 (176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHhHHHHHHH-HHHHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999998876 67789999999 999999999999999888753
No 42
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=91.99 E-value=0.89 Score=40.21 Aligned_cols=62 Identities=21% Similarity=0.192 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC
Q psy10513 78 INTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLT 141 (239)
Q Consensus 78 LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~ 141 (239)
|...|..|+...-.||..++-.. +-.-.....-.+.-+.|||-|.....+-++..||.|.+.
T Consensus 1 Lq~Ai~lE~atip~YL~a~ySi~--~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~l~ 62 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALYSIK--PGTNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPRLT 62 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHBS---TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred CcHHHHHHHHHHHHHHHHHcccC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 56789999999999998776664 222233788899999999999999999999999999886
No 43
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=91.93 E-value=0.94 Score=34.91 Aligned_cols=56 Identities=23% Similarity=0.352 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q psy10513 156 DLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTV 213 (239)
Q Consensus 156 eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L 213 (239)
++|+.|+..|......|..+...+...+ +.+..++.. +-.++.+|.+.+..++..+
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~~-p~~~~~f~~-lA~~E~~H~~~~~~l~~~~ 56 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAKDEG-PELKELFRR-LAEEEQEHAKFLEKLLRKL 56 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH-HHHHHHHHHHHHHHHHCHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhcc-cHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999998887 999999998 9999999999999988776
No 44
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=91.46 E-value=1 Score=34.58 Aligned_cols=55 Identities=25% Similarity=0.379 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q psy10513 156 DLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVR 214 (239)
Q Consensus 156 eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~ 214 (239)
++|..|+.+|......|..+...+ .|.....+|.. +-.++.+|.+.+..++..+.
T Consensus 1 ~~l~~a~~~E~~~~~~Y~~~a~~~---~~~~~~~~~~~-la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 1 EILALAIKMEEEAAEFYLELAEKA---KDPELKKLFEE-LAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHC---CCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999987764 77799999998 99999999999999999885
No 45
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=91.39 E-value=8.6 Score=33.03 Aligned_cols=124 Identities=17% Similarity=0.200 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccccc
Q psy10513 73 DCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWN 152 (239)
Q Consensus 73 eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~~ 152 (239)
.+...|-++.+-|..|+-.=++|-+.|. ..+++..-+-..|.||+.|-++.++.+..||. .+..+.++. |.
T Consensus 18 nl~~iL~DHA~CE~KAA~~A~~L~~rY~----~~~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi--~l~~~~~~~---Ya 88 (180)
T cd07910 18 NLDEILIDHAHCEKKAASSAMSLIFRYP----EKPELVEAMSDLAREELQHFEQVLKIMKKRGI--PLGPDSKDP---YA 88 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCCCCH---HH
Confidence 5667888899999999998887766665 36889999999999999999999999999995 444444442 22
Q ss_pred c----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHH
Q psy10513 153 T----------VEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTL 206 (239)
Q Consensus 153 s----------~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L 206 (239)
+ +...+..-|--=-.=..+-.....+|..--|..+..|-.. ++.-+..|-...
T Consensus 89 ~~L~k~vR~~~p~~llD~Llv~alIEARScERF~lLa~~l~D~eL~~FY~~-Ll~SEarHy~~y 151 (180)
T cd07910 89 SGLRKLVRKGEPERLLDRLLVAALIEARSCERFALLAPALPDPELKKFYRG-LLESEARHYELF 151 (180)
T ss_pred HHHHHHcccCChHHHHHHHHHHHHHHHHhHHHHHHHhccCCCHHHHHHHHH-HHHHHhhHHHHH
Confidence 1 1111111111000001112233344444479999999988 887777765543
No 46
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=90.55 E-value=3.2 Score=37.73 Aligned_cols=138 Identities=14% Similarity=0.207 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc-----CC
Q psy10513 71 HEDCIDKINTQI---NDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRL-----TS 142 (239)
Q Consensus 71 s~eve~~LN~qI---n~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l-----~~ 142 (239)
++...++|.+|+ .-||.++.+||.-++.|. + .++-..+...+.||..|.+-+..-|+.+...... ..
T Consensus 18 dp~~A~~lqEqlGG~~GElsaamqYl~Q~fn~r----~-~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga~~e~~~~~~ 92 (277)
T COG3546 18 NPQLAKLLQEQLGGAFGELSAAMQYLFQGFNVR----D-AKYKDLLMDIGTEELSHLEMVATMINLLNKGATGEGAEEAE 92 (277)
T ss_pred ChHHHHHHHHHhCCcchHHHHHHHHHHhhcccC----c-hHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchh
Confidence 345566677776 479999999999998887 2 6788899999999999999888777665433332 00
Q ss_pred CC-------------------CCC-c--ccc--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhH
Q psy10513 143 IE-------------------APS-K--QEW--------NTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLE 192 (239)
Q Consensus 143 I~-------------------~p~-~--~~~--------~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe 192 (239)
+. .|. + .-| ++++.=|...++.|......+..|+++. .|+.+.+.|.
T Consensus 93 l~~s~~~~~n~~h~~~~~~g~~p~dS~G~pWta~YI~~sGnliaDlr~NiaaE~~aR~~y~rLy~mt---dDpgvrd~L~ 169 (277)
T COG3546 93 LYGSGLGGMNPHHISVLLYGAGPADSAGVPWTAAYIVASGNLIADLRSNIAAEARARLQYERLYEMT---DDPGVRDTLS 169 (277)
T ss_pred hHHhhccCCCchhhhhhccCCCCcccCCCccchhhhhccCccHHHHHHHHHHHhccceeeeeeeecC---CCccHHHHHH
Confidence 00 011 0 123 4577888999999999999999999876 7999999998
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhHH
Q psy10513 193 GRYLQEQVDAIKTLADLLTTVRRTQ 217 (239)
Q Consensus 193 ~~fL~EQve~i~~L~~~L~~L~~~g 217 (239)
. +|.-.+-|...+..-|..|+...
T Consensus 170 f-Ll~Re~~H~~~f~kAL~~l~~~~ 193 (277)
T COG3546 170 F-LLTREIAHQNAFRKALESLENEE 193 (277)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhcc
Confidence 7 78888888888888888887654
No 47
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=90.53 E-value=5.8 Score=34.42 Aligned_cols=111 Identities=15% Similarity=0.174 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccccc----------
Q psy10513 83 NDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWN---------- 152 (239)
Q Consensus 83 n~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~~---------- 152 (239)
.-|+.|-++|.--+++.... ..---+++.+++|..|--.+-+++++||.+|.+-. | -|.
T Consensus 51 aGE~~A~~iY~GQ~~~~r~~-----~~R~~l~em~d~E~~HL~~f~~~l~e~~vRPsll~---P---~W~~~~FalGA~a 119 (204)
T COG2941 51 AGELGAQAIYQGQAAVARSP-----EPRIQLKEMADEEIDHLAWFEQRLLELGVRPSLLN---P---LWYAAAFALGAGA 119 (204)
T ss_pred hhHHHHHHHHhhHHHHHcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHH---H---HHHHHHHHHHHHH
Confidence 46999999999988888733 22238899999999999999999999999886422 1 121
Q ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHH
Q psy10513 153 ---TVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTL 206 (239)
Q Consensus 153 ---s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L 206 (239)
+..-++-..-+.|..|-..|..=...- .+.|..+...|.. |=.|+++|.+..
T Consensus 120 ~Llgdk~am~~teavE~vIe~Hy~~ql~~L-~~~d~~lr~~l~q-fR~DE~eH~d~A 174 (204)
T COG2941 120 GLLGDKAAMGFTEAVETVIEKHYDGQLREL-PNLDAELRAILAQ-FRDDELEHLDNA 174 (204)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHH-HhhHHHHHHHHH
Confidence 123344455556666666665544332 3379999999997 999999988764
No 48
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=87.78 E-value=14 Score=30.47 Aligned_cols=129 Identities=19% Similarity=0.139 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCC------
Q psy10513 74 CIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPS------ 147 (239)
Q Consensus 74 ve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~------ 147 (239)
.+..|.+....|-++.-.--.|+.. ...|-+..-|..+..+-+.|..+|-.=+..+|..|.-..-..-.
T Consensus 4 f~~~L~d~y~aE~Q~~~al~~m~~~-----a~~peLk~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~c~~m~gli~e~ 78 (147)
T cd07909 4 FVHELRDLYSAEKQLVKALPKMAKA-----ATSEELKEAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEA 78 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCcchHHHHHHHHH
Confidence 3556677777777777666666633 35899999999999999999999999999999877532211000
Q ss_pred ---cccc--ccHHHHH--HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHH
Q psy10513 148 ---KQEW--NTVEDLL--TEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLAD 208 (239)
Q Consensus 148 ---~~~~--~s~~eal--e~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~ 208 (239)
...+ +.+.++. -.+...|..-..+|..|+..|..-++......|+. .|.|+..--+.|..
T Consensus 79 ~~~~~~~~~~~v~Da~li~aaq~vEHyEIA~YgtL~~~A~~lG~~e~a~lL~~-~L~EE~~~d~~lt~ 145 (147)
T cd07909 79 EELIEETGDSAVLDAALIAAAQKVEHYEIAGYGTLRALAKLLGLDDAADLLQE-TLDEEKATDRKLTD 145 (147)
T ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 0122 2356666 78889999999999999999999999999999987 78777666555543
No 49
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=87.13 E-value=5.6 Score=31.64 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=54.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q psy10513 153 TVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVR 214 (239)
Q Consensus 153 s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~ 214 (239)
.+.+.|...|+.|-.....|...+..+...+.+.+..+|+. +-.+..+|++.+...|..+.
T Consensus 6 ~~~~~Ln~~la~e~~~~~~y~~~~~~~~g~~f~~l~~~~~~-~~~ee~~Had~laEri~~lG 66 (148)
T cd01052 6 ELIELLNKAFADEWLAYYYYTILAKHVKGPEGEGIKEELEE-AAEEELNHAELLAERIYELG 66 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHHhC
Confidence 47789999999999999999999999988888999999998 89999999999998887765
No 50
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=86.89 E-value=3.8 Score=32.54 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10513 73 DCIDKINTQINDEIR-SAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNK 133 (239)
Q Consensus 73 eve~~LN~qIn~EL~-As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~ 133 (239)
.+...|-..+..|.. +.-.|-.++..+. ..+-...+.||...+.+|..|+..|-+.+..
T Consensus 73 ~~~~~l~~~~~~E~~e~~~~y~~~~~~A~--~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 73 DTLENLKAAIAGETYEYTEMYPEFAEVAE--EEGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566888889999986 7799999999999 5689999999999999999999998877643
No 51
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=86.82 E-value=3.3 Score=32.75 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10513 72 EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLN 132 (239)
Q Consensus 72 ~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~ 132 (239)
..+.+.|...+..|...+-.|-.++..+. ..|....+.||+..+..|..|+.++-+.+.
T Consensus 62 ~~~~~~le~a~~~E~~~~~~~~~~~~~A~--~egd~~~~~~~~~~~~~E~~H~~~~~~~l~ 120 (123)
T cd01046 62 EDTKENLEMMLEGEAGANEGKKDAATEAK--AEGLDEAHDFFHEAAKDEARHGKMLKGLLE 120 (123)
T ss_pred ccHHHHHHHHHHhHHHHHHhHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888999999999999999999998 568999999999999999999999887664
No 52
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.13 E-value=20 Score=32.29 Aligned_cols=125 Identities=14% Similarity=0.179 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCcccc
Q psy10513 72 EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEW 151 (239)
Q Consensus 72 ~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~ 151 (239)
.--.+.|......||+|.+.=|-.++-|. .+.+.-+-.|+ +-|.||-.|-.-+-+++...|. ...+.++... -|
T Consensus 74 ~g~aallHAiAHIEfNAInLaLDa~~RF~--~~p~~F~~dWm-~VA~EE~~HF~Ll~~~L~~LG~--~YGDfpaHdg-Lw 147 (268)
T COG2833 74 HGRAALLHAIAHIEFNAINLALDAVYRFA--PLPLQFYDDWM-RVADEEAKHFRLLRERLKSLGY--DYGDFPAHDG-LW 147 (268)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhc--CCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCC--CcCCCccccc-HH
Confidence 34578899999999999999999999998 56666555554 4588999999999999999995 4555555442 34
Q ss_pred ccHHHHHHHHHH---------HHHH---HHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHH
Q psy10513 152 NTVEDLLTEALH---------MEKQ---LNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLA 207 (239)
Q Consensus 152 ~s~~eale~AL~---------~Ek~---vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~ 207 (239)
... ++-...+. +|-. +|..+.+ +++ +.+|..++..|+= ++.+++.|+.-=.
T Consensus 148 ~~a-~~T~~dl~~RmalVprvLEARGLDatP~l~a--K~~-~~gD~~~~~iLdI-IlrDEigHVaiGn 210 (268)
T COG2833 148 QMA-EATANDLLARMALVPRVLEARGLDATPSLRA--KLA-ETGDSEAAAILDI-ILRDEIGHVAIGN 210 (268)
T ss_pred HHH-HHhhcCHHHHhhhhhhHHhhccCCCCHHHHH--HHH-HcCchHHHHHHHH-HHhccccceeech
Confidence 321 11111111 2221 2233322 233 5699999999997 9999999875433
No 53
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=86.13 E-value=6.4 Score=31.48 Aligned_cols=61 Identities=15% Similarity=0.106 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q psy10513 153 TVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVR 214 (239)
Q Consensus 153 s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~ 214 (239)
.+.+.|..++..|......|...+..+...+-+.+..|++. +-.+..+|++.+...|..+.
T Consensus 5 ~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~~~~~f~~-~a~ee~~Ha~~lae~i~~lG 65 (153)
T cd00907 5 KVIEALNKALTGELTAINQYFLHARMLEDWGLEKLAERFRK-ESIEEMKHADKLIERILFLE 65 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHcC
Confidence 47889999999999999999999999977778889999987 88888899999988877654
No 54
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=85.82 E-value=5.8 Score=30.59 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhh
Q psy10513 155 EDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRR 215 (239)
Q Consensus 155 ~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~ 215 (239)
+++|...+..|......+..++..+...+-+.+..|++. ...+..++..++...+..+.-
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~~~~~~~l~~~~~~-~a~e~~~h~~~l~e~i~~lgg 60 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFDGPNFPGLAKFFQD-QAEEEREHADELAERILMLGG 60 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHhHH-HHHHHHHHHHHHHHHHhcCCC
Confidence 468899999999999999999999987788889999998 888888999998888777654
No 55
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=85.71 E-value=9.5 Score=36.42 Aligned_cols=168 Identities=16% Similarity=0.130 Sum_probs=123.3
Q ss_pred CCCCCCCCCCCCCCCccc-cch------hhchHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCCcc--chhHHHHHHHH
Q psy10513 47 EPTQSSQHSPDSLGKTER-QTL------QNFHEDC-IDKINTQINDEIRSAYTYISMASFCTQDNVA--LFGFAKFFTHS 116 (239)
Q Consensus 47 ~~~~~~~~~~~~~~~~~s-~~r------qn~s~ev-e~~LN~qIn~EL~As~~YlsmA~~f~~~~v~--l~G~A~fF~~~ 116 (239)
..=|..|--|++.|.... +++ ..++..+ ..++-+.|..|---+|+-...-..=-++..| -.+.+.|-+..
T Consensus 85 k~WqPhDflP~~~~~~F~~~v~~lr~~~~~Lpd~~~v~LvgdmiTEeaLPtY~~~Ln~~~gv~d~tg~~~~~W~~Wvr~W 164 (390)
T PLN00179 85 KSWQPQDFLPDPASEGFYDQVKELRERAAELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASATPWARWTRAW 164 (390)
T ss_pred hccCccccCCCCccCChHHHHhhhhHhhcCCChhhhhhhhhcchhhhcchHHHHHHHHhcccccccCCCCCchhhhcccc
Confidence 345778888999887652 221 2466555 4556777888877777766533321122333 34589999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCCCC---------ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH
Q psy10513 117 YKEEIEHMEHLIAYLNKRGGQLRLTSIEAPS---------KQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANL 187 (239)
Q Consensus 117 A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~---------~~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t 187 (239)
..||-.|+.-|-+|+.- -|.|+...|+.-. .....++...|-..-=.|+.-.-+-.+-.++|.+.+|+.+
T Consensus 165 TAEENRHgdlL~~YLyl-TgrVDm~~iE~t~q~li~~G~d~~~~~~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~l 243 (390)
T PLN00179 165 TAEENRHGDLLNKYLYL-SGRVDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDAKL 243 (390)
T ss_pred ccccchHHHHHHHHHhh-ccCcCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHH
Confidence 99999999999999976 4456655544311 0123579999999988999888888889999999999999
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHhhH
Q psy10513 188 TDFLEGRYLQEQVDAIKTLADLLTTVRRT 216 (239)
Q Consensus 188 ~~FLe~~fL~EQve~i~~L~~~L~~L~~~ 216 (239)
..++.. +-.++..|..-...++..+=.+
T Consensus 244 a~icg~-IAaDE~rHe~fY~~iV~~~le~ 271 (390)
T PLN00179 244 AKICGT-IAADEKRHETAYTRIVEKLFEI 271 (390)
T ss_pred HHHHHH-HhccHHHHHHHHHHHHHHHHhh
Confidence 999998 9999999999999988887554
No 56
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=83.44 E-value=8.4 Score=27.99 Aligned_cols=53 Identities=30% Similarity=0.236 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q psy10513 157 LLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTV 213 (239)
Q Consensus 157 ale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L 213 (239)
+|..++..|......+..++..+. |+.+..++.. +..++..|.+.+..++..+
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~---~~~~~~~~~~-~a~~E~~H~~~l~~~~~~~ 54 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP---DPDLKDELLE-IADEERRHADALAERLREL 54 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 578889999999999999888763 8899999998 9999999999999988765
No 57
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.53 E-value=29 Score=29.41 Aligned_cols=138 Identities=20% Similarity=0.204 Sum_probs=97.6
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc---cCCCCC
Q psy10513 69 NFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLR---LTSIEA 145 (239)
Q Consensus 69 n~s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~---l~~I~~ 145 (239)
++.+-..+.|.+....|-++.-.--.||.-+. .|-+-.-|.++-.|--.|..+|-+-+...|..+. -..+..
T Consensus 5 t~~d~f~~~LrD~y~aEkq~~kaL~kma~~~~-----~~~Lka~~E~Hl~ET~~qi~rLe~Vfe~~g~~~~~~~cda~~g 79 (167)
T COG3685 5 TLEDLFIDTLRDIYAAEKQILKALPKMARRAQ-----YPELKAAIEKHLEETKGQIERLEQVFERLGKKARRVTCDAMEG 79 (167)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35566678888888888888888788887765 6788888888888887887776554444354432 111111
Q ss_pred CC------ccccccHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q psy10513 146 PS------KQEWNTVEDLLT-----EALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTV 213 (239)
Q Consensus 146 p~------~~~~~s~~eale-----~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L 213 (239)
.. ...+.+. +++. .+...|..-..+|..|+..|.+.+|..+...|+. .|+|+..--.||.+++-..
T Consensus 80 iiaegq~i~~~~~~~-evlda~L~~aaq~vEhyEIA~YgtL~a~A~qlG~~~a~~ll~~-~L~eEkatd~~Lt~~a~~~ 156 (167)
T COG3685 80 LIAEGQEIMEEFKSN-EVLDAGLIGAAQKVEHYEIACYGTLIAAAEQLGDDEAVKLLEA-ILEEEKATDEKLTQLAPQT 156 (167)
T ss_pred HHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 10 0122221 3333 3456789999999999999999999999999998 9999998888888876544
No 58
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=81.59 E-value=7.2 Score=31.61 Aligned_cols=55 Identities=15% Similarity=0.063 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy10513 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAY 130 (239)
Q Consensus 71 s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~y 130 (239)
...+.+.|...+..|-.+...|..++.... =+..-..|...+.+|..|...|-+.
T Consensus 99 ~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~-----d~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 99 GESIKEMLKLDIASEKAAIAKYKRQAETIK-----DPYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677999999999999999999999764 3778889999999999999988654
No 59
>PF13668 Ferritin_2: Ferritin-like domain
Probab=81.39 E-value=8.4 Score=30.48 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hhCCChHHHHHhHHHhHHHHHHHHHHHHHHHH
Q psy10513 155 EDLLTEALHMEKQLNEKLLKLHACA-----SQHGDANLTDFLEGRYLQEQVDAIKTLADLLT 211 (239)
Q Consensus 155 ~eale~AL~~Ek~vt~~l~~L~~lA-----~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~ 211 (239)
.++|..||.+|.....-|.....-. ....|..+.++++. +..++..|++.|...|.
T Consensus 3 ~~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~E~~H~~~l~~~l~ 63 (137)
T PF13668_consen 3 LDILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQE-IADQEQGHVDFLQAALE 63 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 6789999999999999999887743 34679999999998 99999999999999885
No 60
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=81.28 E-value=14 Score=28.19 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q psy10513 154 VEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVR 214 (239)
Q Consensus 154 ~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~ 214 (239)
.+++|...+.........|....+.+ .|+.+..+|.. |..+-..++..|..+|..+.
T Consensus 2 ~i~~Ln~Ll~~~~d~~~~Y~~a~~~~---~~~~lk~~f~~-~~~~~~~~~~~L~~~i~~~G 58 (111)
T PF09537_consen 2 TIEALNDLLKGLHDGIEGYEKAAEKA---EDPELKSLFQE-FAQERQQHAEELQAEIQELG 58 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----SHHHHHHHHH-HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHH-HHHHHHHHHHHHHHHHHHcC
Confidence 46778888888888888888877766 58999999998 99999999999999998875
No 61
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=81.25 E-value=6.5 Score=41.91 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=50.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q psy10513 152 NTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTT 212 (239)
Q Consensus 152 ~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~ 212 (239)
.+..++++.|+++|+....-|..+.+.+ +|..+.+++.+ +-+++.+|.+.|..++..
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~a---~~~~~K~lF~~-LA~eE~~H~~~l~~~~~~ 915 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKET---SDPVLKELFLK-FAGMEQEHMATLARRYHA 915 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 5799999999999999999998887754 89999999998 999999999999887654
No 62
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=79.38 E-value=23 Score=31.17 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=25.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy10513 106 LFGFAKFFTHSYKEEIEHMEHLIAYLNKR 134 (239)
Q Consensus 106 l~G~A~fF~~~A~EE~eHA~kLi~yl~~R 134 (239)
...|+.||+++|.=|.++|.+|.+....-
T Consensus 21 ~~el~~f~keRa~iE~eYak~L~kLak~~ 49 (239)
T cd07647 21 CKELEDFLKQRAKAEEDYGKALLKLSKSA 49 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45689999999999999999999887553
No 63
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=78.19 E-value=15 Score=29.56 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10513 74 CIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNK 133 (239)
Q Consensus 74 ve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~ 133 (239)
+.++|-..++.|..+...|..++..+.. .+-+..+.||.....++.+|...+-+++..
T Consensus 81 ~~~~l~~al~~E~~~~~~~~~l~~~A~~--~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~ 138 (156)
T cd01055 81 LLEVFEAALEHEQKVTESINNLVDLALE--EKDYATFNFLQWFVKEQVEEEALARDILDK 138 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999999999983 477889999998899998999888888763
No 64
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B.
Probab=76.24 E-value=40 Score=27.32 Aligned_cols=109 Identities=17% Similarity=0.096 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC--CCCccccccH
Q psy10513 77 KINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIE--APSKQEWNTV 154 (239)
Q Consensus 77 ~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~--~p~~~~~~s~ 154 (239)
+|...+..|..+.|.|=..+.+..- ....-......+-|...+.++..+..+|+.|...... .|. .-++.
T Consensus 1 AL~~al~aE~aAvy~ygv~~a~~~~------~~r~~~~~~~~~HR~rRd~l~~~l~~~g~~~p~~~aaY~lP~--~v~d~ 72 (131)
T PF14530_consen 1 ALQAALAAEHAAVYGYGVAAARLDG------DRRAAARAALAAHRARRDALAAALRAAGATPPPPEAAYQLPF--PVTDP 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-G------GGHHHHHHHHHHHHHHHHHHHHHHHHTT-------SS---SS-----SH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC--CCCCH
Confidence 5788899999999999999998863 2344445566667788888999999999887543322 222 46689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHH
Q psy10513 155 EDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQE 198 (239)
Q Consensus 155 ~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~E 198 (239)
..+.+.+..+|..+...+..+. -+ .|...+.|--. .|.+
T Consensus 73 ~sa~~la~~lE~~~a~aw~~lv-~a---~~~~~R~~av~-aL~~ 111 (131)
T PF14530_consen 73 ASAAALAAALEDDCAAAWRALV-AA---TDPALRRFAVD-ALTE 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-H-----SHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hc---CChhHHHHHHH-HHHH
Confidence 9999999999999999999998 32 57778777766 4443
No 65
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=75.83 E-value=25 Score=29.12 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=51.3
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy10513 68 QNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKR 134 (239)
Q Consensus 68 qn~s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~R 134 (239)
-+++..+...|...|..|-.|...|.-++...+ | |++-.-+.....+|..|.+.|.+.+...
T Consensus 94 v~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~--D---p~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 94 IQSSGNLVADLRSNIAAESRARLTYERLYEMTD--D---PGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667888999999999999999999999876 4 5666666668889999999999888654
No 66
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=75.51 E-value=45 Score=27.52 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=29.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q psy10513 105 ALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLR 139 (239)
Q Consensus 105 ~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~ 139 (239)
-+..++.||+++|.=|.++|..|-+.-..-.+.+.
T Consensus 15 ~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~~ 49 (191)
T cd07610 15 LLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKPE 49 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 35679999999999999999999998877665543
No 67
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=73.11 E-value=45 Score=30.04 Aligned_cols=31 Identities=6% Similarity=0.009 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy10513 106 LFGFAKFFTHSYKEEIEHMEHLIAYLNKRGG 136 (239)
Q Consensus 106 l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG 136 (239)
...|+.||+++|.=|.++|..|.+....-++
T Consensus 28 ~kel~~f~keRa~iEe~Yak~L~kLak~~~~ 58 (269)
T cd07673 28 TKELSDFIRERATIEEAYSRSMTKLAKSASN 58 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3468999999999999999999988876553
No 68
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=72.64 E-value=52 Score=29.12 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCCC
Q psy10513 106 LFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHA-CASQHGD 184 (239)
Q Consensus 106 l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~~s~~eale~AL~~Ek~vt~~l~~L~~-lA~~~~D 184 (239)
...++.||+.+|.=|...|.+|.+....-.|.+ +.++...++...+.- +..+-++|. ++....+
T Consensus 21 ~~el~~fl~ERa~IEe~Yak~L~klak~~~~~~-----------e~Gtl~~sw~~~~~e----~E~~a~~H~~la~~L~~ 85 (233)
T cd07649 21 QKEMAEFIRERIKIEEEYAKNLSKLSQSSLAAQ-----------EEGTLGEAWAQVKKS----LADEAEVHLKFSSKLQS 85 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----------CCChHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999875433322 345555555444332 222222221 1111111
Q ss_pred hHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhH
Q psy10513 185 ANLTDFLEGRYLQEQVDAIKTLADLLTTVRRT 216 (239)
Q Consensus 185 ~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~~ 216 (239)
....=|.. |..++.+..+.+.+.+..+.+.
T Consensus 86 -ev~~~l~~-f~~~~~k~~k~~e~~~~k~~K~ 115 (233)
T cd07649 86 -EVEKPLLN-FRENFKKDMKKLDHHIADLRKQ 115 (233)
T ss_pred -HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 11222444 6677777888888777776553
No 69
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=72.39 E-value=50 Score=29.20 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=27.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy10513 106 LFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQ 137 (239)
Q Consensus 106 l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~ 137 (239)
..-|+.||+++|.=|.++|..|.+....-.+.
T Consensus 21 ~~el~~f~keRa~IEe~Yak~L~kLakk~~~~ 52 (261)
T cd07648 21 VKELADFLRERATIEETYSKALNKLAKQASNS 52 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45689999999999999999999988765553
No 70
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=72.34 E-value=66 Score=28.04 Aligned_cols=32 Identities=22% Similarity=0.118 Sum_probs=27.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy10513 105 ALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGG 136 (239)
Q Consensus 105 ~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG 136 (239)
-+..|..||+++|.=|.++|.+|.+....-.+
T Consensus 20 ~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~ 51 (251)
T cd07653 20 FLERYGKFVKERAAIEQEYAKKLRKLVKKYLP 51 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46679999999999999999999988765443
No 71
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=69.92 E-value=20 Score=28.82 Aligned_cols=53 Identities=19% Similarity=0.073 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q psy10513 155 EDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVR 214 (239)
Q Consensus 155 ~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~ 214 (239)
.++|..|++.|+....-|..++..+. ....+.. +...+.+|.+.+..++....
T Consensus 2 ~~~L~~Ale~Ek~a~~~Y~~~~~k~~------~~~~F~~-la~~E~~H~~~l~~L~~~~~ 54 (135)
T cd01048 2 IAALLYALEEEKLARDVYLALYEKFG------GLRPFSN-IAESEQRHMDALKTLLERYG 54 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc------CcchHHH-HHHHHHHHHHHHHHHHHHcC
Confidence 46899999999999999999998872 3445555 88899999999999888654
No 72
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=68.42 E-value=37 Score=23.54 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy10513 76 DKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGG 136 (239)
Q Consensus 76 ~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG 136 (239)
+.++..++.+=.++..|...+.=+. =|.+=..|.....+...++..|++|+.++|=
T Consensus 4 ~i~~d~L~~~K~~~~~y~~a~~E~~-----np~lR~~l~~~~~~~~~~~~~l~~~m~~kGw 59 (64)
T PF07875_consen 4 DIANDLLNSEKAAARNYATAALECA-----NPELRQILQQILNECQQMQYELFNYMNQKGW 59 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3467788888888999988888666 4778899999999999999999999999984
No 73
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=66.61 E-value=49 Score=27.33 Aligned_cols=57 Identities=30% Similarity=0.342 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q psy10513 154 VEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVR 214 (239)
Q Consensus 154 ~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~ 214 (239)
..+.|+.++..|+.+...+..+...| .++.+..-|+. .+.+-.+++..|+.++..+.
T Consensus 6 ~~~~L~d~y~aE~q~~~~l~~~~~~a---~~~~L~~~l~~-h~~eT~~q~~rLe~~~~~lg 62 (159)
T PF05974_consen 6 FIDELRDLYSAEKQLLKALPKLAEAA---SSPELKAALEE-HLEETEQQIERLEQIFEALG 62 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----SSHHHHHHHHH-HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC---CCHHHHHHHHH-HHHHHHHHHHHHHHHHHHcc
Confidence 45678889999999999999888766 66999999998 89999999999999888774
No 74
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=65.39 E-value=13 Score=31.76 Aligned_cols=59 Identities=8% Similarity=0.122 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy10513 75 IDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRG 135 (239)
Q Consensus 75 e~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RG 135 (239)
-..||....++=.++=.+..|++++. ..|++.+..|+..+..-|..|-.-|+.||...+
T Consensus 77 A~~ld~~AAl~SaSWG~fQIMGfn~~--~~Gy~sv~~fv~am~~se~~Ql~af~~Fi~~~~ 135 (175)
T PF11860_consen 77 ARALDEEAALESASWGLFQIMGFNWK--ALGYASVEEFVEAMCESEAAQLDAFVRFIKANP 135 (175)
T ss_pred HHhhCHHHHHHHhhhhHHHHHHHHHH--HcCCCCHHHHHHHHHhCHHHHHHHHHHHHHcCH
Confidence 46788888999999999999999999 789999999999999999999999999997744
No 75
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=63.58 E-value=1e+02 Score=26.85 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=27.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy10513 105 ALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGG 136 (239)
Q Consensus 105 ~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG 136 (239)
....|+.||+++|.=|.++|.+|.+....-.+
T Consensus 20 ~~~el~~f~keRa~iE~eYak~L~kLakk~~~ 51 (236)
T cd07651 20 TLEELRSFYKERASIEEEYAKRLEKLSRKSLG 51 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 35679999999999999999999988766554
No 76
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=59.96 E-value=62 Score=23.24 Aligned_cols=28 Identities=29% Similarity=0.220 Sum_probs=24.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10513 106 LFGFAKFFTHSYKEEIEHMEHLIAYLNK 133 (239)
Q Consensus 106 l~G~A~fF~~~A~EE~eHA~kLi~yl~~ 133 (239)
+.-+..||+++|.=|.++|..|-+-...
T Consensus 25 ~~~~~~f~~~Ra~iE~eYak~L~kL~~~ 52 (87)
T smart00055 25 LEDLKKFIRERAKIEEEYAKKLQKLSKK 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4458999999999999999999998765
No 77
>PRK13456 DNA protection protein DPS; Provisional
Probab=59.18 E-value=62 Score=27.94 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10513 73 DCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLN 132 (239)
Q Consensus 73 eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~ 132 (239)
.+.+.|...+..|-.|.-.|..+-.++. +.+-....-.. ..-.+|.+|+..|.+++.
T Consensus 107 dv~~mL~~~L~AEr~AI~~Y~eii~~~~--~kDp~T~~l~~-~IL~dE~eH~~dl~~lL~ 163 (186)
T PRK13456 107 DPKEILKVLLEAERCAIRTYTEICDMTA--GKDPRTYDLAL-AILQEEIEHEAWFSELLG 163 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCccHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999998 33444444343 477788999999999994
No 78
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=58.29 E-value=84 Score=25.90 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q psy10513 154 VEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTV 213 (239)
Q Consensus 154 ~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L 213 (239)
.++-|+.+...|+.+...+..+.+.| .++.+..-|+. =+.+-.+++..|+.++..+
T Consensus 4 f~~~L~d~y~aE~Q~~~al~~m~~~a---~~peLk~~l~~-H~~eT~~qi~rLe~if~~l 59 (147)
T cd07909 4 FVHELRDLYSAEKQLVKALPKMAKAA---TSEELKEAFES-HLEETEGQVERLEQIFESL 59 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---CCHHHHHHHHH-HHHHHHHHHHHHHHHHHHc
Confidence 45678899999999999999887554 89999999998 6888888888888887766
No 79
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=58.07 E-value=1.3e+02 Score=26.52 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=24.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10513 106 LFGFAKFFTHSYKEEIEHMEHLIAYLNK 133 (239)
Q Consensus 106 l~G~A~fF~~~A~EE~eHA~kLi~yl~~ 133 (239)
|..+.+||+++|.=|.+-|.+|-+-..+
T Consensus 21 Le~i~~F~reRa~iE~EYA~~L~~L~kq 48 (237)
T cd07657 21 LETMKKYMAKRAKSDREYASTLGSLANQ 48 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999887755
No 80
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=57.71 E-value=1.4e+02 Score=26.54 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccccccHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCh
Q psy10513 107 FGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALH-MEKQLNEKLLKLHACASQHGDA 185 (239)
Q Consensus 107 ~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~~s~~eale~AL~-~Ek~vt~~l~~L~~lA~~~~D~ 185 (239)
.-|..||+.+|.=|.+.|.+|.+....-+|.. +.+|...+|...+. +|.. ..++..+.-.... +
T Consensus 22 ~el~~f~keRa~iE~~Yak~L~kl~kk~~~~~-----------e~gTl~~a~~~~~~e~e~~--a~~H~~ia~~L~~-~- 86 (242)
T cd07671 22 KDVEELLKQRAQAEERYGKELVQIARKAGGQT-----------EINTLKASFDQLKQQIENI--GNSHIQLAGMLRE-E- 86 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-----------cchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-H-
Confidence 45889999999999999999999987766533 23555555554432 2222 2223222222221 1
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHhh
Q psy10513 186 NLTDFLEGRYLQEQVDAIKTLADLLTTVRR 215 (239)
Q Consensus 186 ~t~~FLe~~fL~EQve~i~~L~~~L~~L~~ 215 (239)
. .-|.. |...|.+.-+.+...+.++..
T Consensus 87 -~-~~l~~-f~~~qke~rK~~e~~~eK~qk 113 (242)
T cd07671 87 -L-KSLEE-FRERQKEQRKKYEAVMERVQK 113 (242)
T ss_pred -H-HHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 1 22554 666677777777777666654
No 81
>PRK10635 bacterioferritin; Provisional
Probab=57.14 E-value=67 Score=26.61 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10513 72 EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLN 132 (239)
Q Consensus 72 ~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~ 132 (239)
..+.+.|..-+..|..+.-.|.-+..+|.. .+=.....+|...-.+|-+|+..|-.-+.
T Consensus 81 ~~v~eml~~dl~~E~~ai~~y~e~i~~a~~--~~D~~s~~ll~~iL~dEe~H~~~le~~l~ 139 (158)
T PRK10635 81 EDVEEMLRSDLRLELEGAKDLREAIAYADS--VHDYVSRDMMIEILADEEGHIDWLETELD 139 (158)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888999999999999999999999993 45667778888888999999998876653
No 82
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=56.99 E-value=1.4e+02 Score=26.44 Aligned_cols=92 Identities=18% Similarity=0.138 Sum_probs=51.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy10513 106 LFGFAKFFTHSYKEEIEHMEHLIAYLNKR-GGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGD 184 (239)
Q Consensus 106 l~G~A~fF~~~A~EE~eHA~kLi~yl~~R-GG~v~l~~I~~p~~~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D 184 (239)
..-+..||+.+|.=|.+.|.+|.+....- +|.+ +.++...+|...+. |-.-...++..+..... +
T Consensus 21 ~~el~~f~kERA~IE~~YaK~L~kLskk~~~g~~-----------E~GTl~~sw~~~~~-E~e~~a~~H~~la~~L~--~ 86 (240)
T cd07672 21 CKEFEDFLKERASIEEKYGKELLNLSKKKPCGQT-----------EINTLKRSLDVFKQ-QIDNVGQSHIQLAQTLR--D 86 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-----------ccchHHHHHHHHHH-HHHHHHHHHHHHHHHHH--H
Confidence 45689999999999999999999888653 2211 34455555544332 22222223322222222 2
Q ss_pred hHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q psy10513 185 ANLTDFLEGRYLQEQVDAIKTLADLLTTVR 214 (239)
Q Consensus 185 ~~t~~FLe~~fL~EQve~i~~L~~~L~~L~ 214 (239)
.+ .-|+. |...|.+.-+.+...+..+.
T Consensus 87 -~~-~~~~~-f~~~qk~~rKk~e~~~ek~~ 113 (240)
T cd07672 87 -EA-KKMED-FRERQKLARKKIELIMDAIH 113 (240)
T ss_pred -HH-HHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 11 13444 55556666666666666664
No 83
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=56.79 E-value=34 Score=30.49 Aligned_cols=30 Identities=10% Similarity=-0.029 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy10513 106 LFGFAKFFTHSYKEEIEHMEHLIAYLNKRG 135 (239)
Q Consensus 106 l~G~A~fF~~~A~EE~eHA~kLi~yl~~RG 135 (239)
-.-|+.||+++|.=|.++|..|.+.-..-+
T Consensus 21 ~kel~~flkeRa~IEe~Yak~L~klak~~~ 50 (261)
T cd07674 21 TKELADFVRERAAIEETYSKSMSKLSKMAS 50 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345899999999999999999998884433
No 84
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=56.42 E-value=1.5e+02 Score=26.62 Aligned_cols=128 Identities=19% Similarity=0.192 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-Cc--c------------------------------------chhHHHH
Q psy10513 72 EDCIDKINTQINDEIRSAYTYISMASFCTQD-NV--A------------------------------------LFGFAKF 112 (239)
Q Consensus 72 ~eve~~LN~qIn~EL~As~~YlsmA~~f~~~-~v--~------------------------------------l~G~A~f 112 (239)
..+...|-++.+-|..|+..=+++-.-|..+ +. . .+.+..-
T Consensus 26 ~nl~~lL~DHa~CE~KAA~tAm~li~rY~~~~~~~~~ll~~~~py~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~eLv~~ 105 (240)
T PF06175_consen 26 ANLPTLLIDHANCEKKAAQTAMSLIRRYAVDKESGQALLAWLKPYEDFVYRKDGDIQKNQLSKSLQPKSHYPEKEELVDK 105 (240)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHTT---------------------------------------------HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHH
Confidence 5567889999999999998877764333211 11 1 1223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCc----------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy10513 113 FTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSK----------QEWNTVEDLLTEALHMEKQLNEKLLKLHACASQH 182 (239)
Q Consensus 113 F~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~----------~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~ 182 (239)
+-..|.||+.|-+.+++.+..||... ..+.+..- .+-.-.++-|=.+--.| ..+-.....+|..-
T Consensus 106 Ms~LarEEL~HFeqVl~im~~RGi~l--~~~~~d~Ya~~L~k~vR~~ep~~lvDrLLv~AlIE---ARSCERF~lLa~~l 180 (240)
T PF06175_consen 106 MSRLAREELHHFEQVLEIMKKRGIPL--GPDRKDRYAKGLRKHVRKGEPERLVDRLLVGALIE---ARSCERFALLAEHL 180 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-----------SHHHHHHTTS-SSTTHHHHHHHHHHHHHH---HHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCcCHHHHHHHHhccCCchHhHHHHHHHHHhHh---hhhHHHHHHHHHhh
Confidence 55789999999999999999999543 44443320 01111222221111122 22233344556555
Q ss_pred CChHHHHHhHHHhHHHHHHHHHHH
Q psy10513 183 GDANLTDFLEGRYLQEQVDAIKTL 206 (239)
Q Consensus 183 ~D~~t~~FLe~~fL~EQve~i~~L 206 (239)
|..+..|-.. ++.-+..|-...
T Consensus 181 -D~eL~~FY~~-Ll~SEArHy~~y 202 (240)
T PF06175_consen 181 -DEELAKFYRS-LLRSEARHYQDY 202 (240)
T ss_dssp --HHHHHHHHH-HHHHHHHHHHHH
T ss_pred -CHHHHHHHHH-HHHHHhhHHHHH
Confidence 9999999998 888888776543
No 85
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=55.75 E-value=1.4e+02 Score=28.34 Aligned_cols=134 Identities=16% Similarity=0.146 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCcccc
Q psy10513 72 EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEW 151 (239)
Q Consensus 72 ~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~ 151 (239)
...++-|-.-...|+.....|--|+.-.... -|-++..|.-+|-+|-.||=-|=+=+.+-|-.+++.-+.+-....|
T Consensus 82 ~~FidFLerSctaEFSGflLYKEl~rrlk~~---nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~k~YTf 158 (355)
T PRK13654 82 KEFIDFLERSCTAEFSGFLLYKELSRRLKDR---NPLLAELFQLMARDEARHAGFLNKAMKDFGLSLDLGFLTKKKKYTF 158 (355)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHhcccc---CcHHHHHHHHHhhhHHHHhhhHHHHHHHcCccccchhhccCCceee
Confidence 3478888899999999999999999988732 4889999999999999999999999999999999999988765445
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH---HHHhHHHhHHHHHHHHHHHHHH
Q psy10513 152 NTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANL---TDFLEGRYLQEQVDAIKTLADL 209 (239)
Q Consensus 152 ~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t---~~FLe~~fL~EQve~i~~L~~~ 209 (239)
=.+.=+|=...--||.--..|=.|++.-+++-|... .+|++. +=+++-.|=+-+.-+
T Consensus 159 F~PkfIfYatYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~Fe~-WCqDEnRHGd~F~~l 218 (355)
T PRK13654 159 FPPKFIFYATYLSEKIGYWRYITIYRHLEKHPEHRFHPIFKFFEN-WCQDENRHGDFFALL 218 (355)
T ss_pred eCcceeeehhHhHhhhhHHHHHHHHHHHHhCcccccCchHHHHHH-HhcccchhHHHHHHH
Confidence 456667777788899999999999988887766554 444444 455555554444433
No 86
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=55.03 E-value=1.8e+02 Score=27.41 Aligned_cols=133 Identities=14% Similarity=0.121 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCcccc
Q psy10513 72 EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEW 151 (239)
Q Consensus 72 ~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~ 151 (239)
...++-|-.-...|+.....|--|+.-.... =|-++..|.-+|-+|-.||=-|=+=+.+-|-.+++.-+.+-....|
T Consensus 72 ~~FidFLerScTaEFSGflLYKEl~rrlk~~---~P~lae~F~~MaRDEARHAGFlNkam~df~l~lDLgfLtk~r~YTf 148 (337)
T TIGR02029 72 QAFIEFLERSCTSEFSGFLLYKELSRRLKNR---DPVVAELFQLMARDEARHAGFLNKALGDFGLALDLGFLTKTRKYTF 148 (337)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHhcCCC---ChHHHHHHHHHhhhhHHHhhhHHHHHHHcCcccchhhhccCCceee
Confidence 3478888899999999999999999988732 3569999999999999999999999999999999999988765455
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH---HHHhHHHhHHHHHHHHHHHHH
Q psy10513 152 NTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANL---TDFLEGRYLQEQVDAIKTLAD 208 (239)
Q Consensus 152 ~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t---~~FLe~~fL~EQve~i~~L~~ 208 (239)
=.+.=++=...--||.--..|=.|++.-+++-|... .+|++. +=+++-.|=+-+.-
T Consensus 149 F~PkfI~YAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~Fe~-WCqDEnRHGd~F~~ 207 (337)
T TIGR02029 149 FRPKFIYYATYLSEKIGYWRYITIYRHLEENPENQFYPIFKYFES-WCQDENRHGDAFAA 207 (337)
T ss_pred eccceeehhhHhHhhhhhHHHHHHHHHHHhCcccccchHHHHHHH-HhcccchhHHHHHH
Confidence 567777777888899999999889988777766544 444444 45555555444443
No 87
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=53.93 E-value=82 Score=24.54 Aligned_cols=52 Identities=13% Similarity=0.031 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q psy10513 158 LTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTV 213 (239)
Q Consensus 158 le~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L 213 (239)
+..++..|.....-|..+...+ +|+....++.. +-.++.+|.+.+..++..+
T Consensus 3 ~~~~~~~E~~~~~~Y~~la~~~---~~~~~k~~f~~-lA~~E~~H~~~~~~~~~~~ 54 (125)
T cd01044 3 LRKFQKDEITEAAIYRKLAKRE---KDPENREILLK-LAEDERRHAEFWKKFLGKR 54 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Confidence 5677888988888888887654 78889999987 8889999999998887764
No 88
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=53.75 E-value=1.9e+02 Score=27.36 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCcccc
Q psy10513 72 EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEW 151 (239)
Q Consensus 72 ~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~ 151 (239)
...++-|-.-...|+.....|--|+.-... .-|-++..|.-+|-+|-.||=-|=+=+.+-|-.+++.-+.+-....|
T Consensus 78 ~~FidFLerScTaEFSGflLYKEl~rrlk~---~nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~rkYTf 154 (351)
T CHL00185 78 SLFVEFLERSCTAEFSGFLLYKELSRKLKD---KNPLLAEGFLLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRKYTF 154 (351)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHhcc---CCcHHHHHHHHHhhhhHHHhhhHHHHHHHcCccccchhhccCCceee
Confidence 346788888999999999999999998863 25889999999999999999999999999999999999988776555
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH---HHHhHHHhHHHHHHHHHHHHHH
Q psy10513 152 NTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANL---TDFLEGRYLQEQVDAIKTLADL 209 (239)
Q Consensus 152 ~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t---~~FLe~~fL~EQve~i~~L~~~ 209 (239)
=.+.=+|=...--||.--..|=.|++.-+++-|... .+|++. +=+++-.|=+-+.-+
T Consensus 155 F~PkfI~YAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~FE~-WCqDEnRHGdfF~al 214 (351)
T CHL00185 155 FSPKFIFYATYLSEKIGYWRYITIYRHLEKNPEYRIYPIFKFFES-WCQDENRHGDFFAAL 214 (351)
T ss_pred ecccceehhhHHHhhhhhhHHhHHHHHHHhCcccccchHHHHHHH-HhcccchhHHHHHHH
Confidence 567778888888899999999999988887766554 444444 455555554444433
No 89
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=53.21 E-value=1.6e+02 Score=25.88 Aligned_cols=31 Identities=23% Similarity=0.146 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy10513 106 LFGFAKFFTHSYKEEIEHMEHLIAYLNKRGG 136 (239)
Q Consensus 106 l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG 136 (239)
...|+.||++.|.=|.+||..|.+....-.+
T Consensus 21 ~ke~~~FlkkRa~iEeeYak~L~KLak~~~~ 51 (234)
T cd07652 21 AKEFATFLKKRAAIEEEHARGLKKLARTTLD 51 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4569999999999999999999987765443
No 90
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=52.81 E-value=1.3e+02 Score=26.49 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10513 106 LFGFAKFFTHSYKEEIEHMEHLIAYLNK 133 (239)
Q Consensus 106 l~G~A~fF~~~A~EE~eHA~kLi~yl~~ 133 (239)
...++.||+++|.=|.+.|..|.+....
T Consensus 21 ckel~~f~kERa~IE~~YAK~L~kLa~k 48 (239)
T cd07658 21 CKELATVLQERAELELNYAKGLSKLSGK 48 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999988765
No 91
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=52.35 E-value=1.8e+02 Score=27.26 Aligned_cols=135 Identities=13% Similarity=0.106 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccc
Q psy10513 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQE 150 (239)
Q Consensus 71 s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~ 150 (239)
....++-|-.-...|+.....|--|+.-... .-|-++..|.-+|-+|-.||=-|=+=+.+-|-.+++.-+.+-....
T Consensus 61 r~~FidFLerSctaEFSGflLYKEl~rrlk~---~nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~r~YT 137 (323)
T cd01047 61 RQIFLEFLERSCTSEFSGFLLYKELGRRLKN---TNPVVAELFRLMARDEARHAGFLNKALSDFNLALDLGFLTKTRKYT 137 (323)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHccc---CCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCcccchhhhccCCcee
Confidence 4556788888999999999999999998873 2588999999999999999999999999999999999988876545
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH---HHHhHHHhHHHHHHHHHHHHHH
Q psy10513 151 WNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANL---TDFLEGRYLQEQVDAIKTLADL 209 (239)
Q Consensus 151 ~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t---~~FLe~~fL~EQve~i~~L~~~ 209 (239)
|=.+.=++=...--||.--..|=.|++.-+++-+... .+|++. +=+++-.|=+-+.-+
T Consensus 138 fF~PkfI~YatYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~Fe~-WCqDEnRHGd~F~~l 198 (323)
T cd01047 138 FFKPKFIFYATYLSEKIGYWRYITIYRHLERNPENQFHPIFKYFEN-WCQDENRHGDFFAAL 198 (323)
T ss_pred eeCccceeehhHhhhhhhhHHHHHHHHHHHhCcccccchHHHHHHH-HhcccchhhHHHHHH
Confidence 5567777777788899999999889988777766544 444444 455555554444433
No 92
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=52.31 E-value=91 Score=26.41 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q psy10513 154 VEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVR 214 (239)
Q Consensus 154 ~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~ 214 (239)
+..+++...+-|......|..-...+.. |+.+..+|.. +.+++.+|+.+++..|..++
T Consensus 3 i~r~lRVdHAGE~~A~~iY~gQ~~~~~~--~~~~~~~l~~-~~~~E~~Hl~~f~~~l~~~~ 60 (172)
T PF03232_consen 3 IARILRVDHAGEVGAVRIYRGQLAVARR--DPELRPFLKE-MAEEEKDHLAWFEQLLPELR 60 (172)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHH-HHHHHHHHHHHHHHHhHHcC
Confidence 3467788888888888877777666533 9999999997 99999999999999999874
No 93
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=49.74 E-value=78 Score=25.56 Aligned_cols=55 Identities=9% Similarity=0.192 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q psy10513 156 DLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVR 214 (239)
Q Consensus 156 eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~ 214 (239)
+.|...+.........|...++ ...|+.+..+++. |..+-...+.+|..+|..+.
T Consensus 3 ~~Ln~Lie~~~D~~~gY~~aae---~v~~~~lk~~f~~-~~~~~~~~~~eL~~~v~~lG 57 (139)
T TIGR02284 3 HSLNDLIEISIDGKDGFEESAE---EVKDPELATLFRR-IAGEKSAIVSELQQVVASLG 57 (139)
T ss_pred HHHHHHHHHcccHHHHHHHHHH---HCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhC
Confidence 3444445554445555554444 4589999999998 99999999999999998875
No 94
>PF12981 DUF3865: Domain of Unknown Function with PDB structure (DUF3865); InterPro: IPR024477 This entry represents a family of proteins of unknown function. The Nostoc punctiforme protein (D0VWS1 from SWISSPROT) has been structurally characterised and adopts a heme oxygenase-like fold similar to that of the Chlamydia trachomatis death domain-binding CADD protein. The proposed active sites of the Nostoc and Chlamydia sequences are identical, suggesting similar functions.; PDB: 3B5P_A 3B5O_A.
Probab=48.62 E-value=1.9e+02 Score=25.77 Aligned_cols=121 Identities=16% Similarity=0.229 Sum_probs=73.6
Q ss_pred HHHHHHHHhcccCCccchhHHHHHHHHHHHHHH-------HHHHHHHHHHH-cCCccccCCCCCCCc----------ccc
Q psy10513 90 YTYISMASFCTQDNVALFGFAKFFTHSYKEEIE-------HMEHLIAYLNK-RGGQLRLTSIEAPSK----------QEW 151 (239)
Q Consensus 90 ~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~e-------HA~kLi~yl~~-RGG~v~l~~I~~p~~----------~~~ 151 (239)
...+..|+++-+ ..+.||++.-|.+-..||+. ||--+-+=+.. -|..| -+.++.+.. -+|
T Consensus 53 ~~~l~~A~~~~~-~~~~~~V~~El~~Ni~EE~G~~~gk~sHy~~~~~~l~~~~~~~v-~~~~Ps~aT~~fl~sv~~L~t~ 130 (231)
T PF12981_consen 53 CGMLQRAAYCIR-GFCWPGVAQELQRNINEEMGEGCGKISHYVVFRKALHTYFGFDV-NNRMPSVATTHFLDSVLALFTW 130 (231)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTTTTTT--HHHHHHHHHHHHHS----TT----HHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHh-hcCCcHHHHHHHHhHHHhcCCCCCCcchHHHHHHHHHHHhCCcc-cccCCcHHHHHHHHHHHHHhCC
Confidence 345566777776 57899999999999999999 88766555544 33221 111222211 133
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-ChHHH------HHhHHHhHHHHHHHHHHHHHHHHHH
Q psy10513 152 NTVEDLLTEALHMEKQLNEKLLKLHACASQHG-DANLT------DFLEGRYLQEQVDAIKTLADLLTTV 213 (239)
Q Consensus 152 ~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~-D~~t~------~FLe~~fL~EQve~i~~L~~~L~~L 213 (239)
. ...++-...+.|-.....+.-|.+++.+.. +-.+. +|.++|+=+=+++|.+.|+..|...
T Consensus 131 ~-~s~vlGa~YAtE~~AIpEl~ll~ei~~~la~rk~~~~~~s~l~F~d~HlDg~E~~H~d~L~~~l~~~ 198 (231)
T PF12981_consen 131 D-SSEVLGACYATEAAAIPELQLLYEIVNELAQRKGLHNSWSQLDFYDWHLDGTEQEHKDGLRQFLASY 198 (231)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTTT---HHHHH------HHHHHCS----HHHHHHHHHHHTT
T ss_pred C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3 377888899999999999888888765542 22222 4888876334777888887665543
No 95
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=45.84 E-value=1.2e+02 Score=25.63 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q psy10513 153 TVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTT 212 (239)
Q Consensus 153 s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~ 212 (239)
...+-|+.++.-|-.....|.-..++|.+++.+.....+.. .-.++..|-..+..+|..
T Consensus 4 ~t~~~L~~aF~GEs~a~~rY~~~A~~A~~eG~~~va~lfr~-iA~~E~~HA~~~~~~l~~ 62 (166)
T COG1592 4 ETEENLRKAFAGESMAVMRYLIFAKVAEEEGYPEIARLFRA-IAEAEAVHAKNHLKLLGK 62 (166)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHhcc
Confidence 46778999999999999999999999999999999999987 777777777766666654
No 96
>KOG4061|consensus
Probab=45.03 E-value=2.1e+02 Score=24.91 Aligned_cols=117 Identities=11% Similarity=0.106 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC-CCCCC---c---cccccHH
Q psy10513 83 NDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTS-IEAPS---K---QEWNTVE 155 (239)
Q Consensus 83 n~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~-I~~p~---~---~~~~s~~ 155 (239)
+-||.|-++|----+.... ..++.-..++=++|.+|-..|-++++++..+|.+-. +=... . .---..+
T Consensus 58 AGElGAdrIYaGQ~avL~~-----~~vgpvi~hmWdqEk~Hl~tf~~l~~k~rVrpT~l~P~w~vagfalGaGTALlg~e 132 (217)
T KOG4061|consen 58 AGELGADRIYAGQMAVLQG-----TSVGPVIKHMWDQEKEHLKTFENLALKHRVRPTVLTPLWNVAGFALGAGTALLGKE 132 (217)
T ss_pred ccccccchhhhchhhhhcC-----CCchhHHHHHHHHHHHHHHHHHHHHHHccCCchhhhhHHHHHHHHhccchhhhChH
Confidence 4699999999854444442 227778888889999999999999999988775321 11100 0 0011356
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhh--CCChHHHHHhHHHhHHHHHHHHHH
Q psy10513 156 DLLTEALHMEKQLNEKLLKLH-ACASQ--HGDANLTDFLEGRYLQEQVDAIKT 205 (239)
Q Consensus 156 eale~AL~~Ek~vt~~l~~L~-~lA~~--~~D~~t~~FLe~~fL~EQve~i~~ 205 (239)
.+|.+..+.|--+-..|++-. .++.. +.+-.+...|.. |-+|+.+|.+.
T Consensus 133 aAMACT~AVEtvIg~HYNdQlr~l~~~~pe~~kell~~i~~-fRDeEleHhdt 184 (217)
T KOG4061|consen 133 AAMACTEAVETVIGGHYNDQLRELAEDDPEEHKELLSTITK-FRDEELEHHDT 184 (217)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhCcHhHHHHHHHHHH-HhHHHHHhhcc
Confidence 788888888887777776543 33433 345566777776 88888887664
No 97
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=43.68 E-value=1.8e+02 Score=23.68 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=44.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CChHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q psy10513 153 TVEDLLTEALHMEKQLNEKLLKLHACASQH--GDANLTDFLEGRYLQEQVDAIKTLADLLTT 212 (239)
Q Consensus 153 s~~eale~AL~~Ek~vt~~l~~L~~lA~~~--~D~~t~~FLe~~fL~EQve~i~~L~~~L~~ 212 (239)
.+.++|...+..|-.....|..+...+... +-+.+..|+.. --.|+.+|...|-.+|..
T Consensus 3 ~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~-~a~eE~~HA~~l~~~i~~ 63 (161)
T cd01056 3 ECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRK-LSDEEREHAEKLIKYQNK 63 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999776 67777777776 455555555555554443
No 98
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=42.40 E-value=2.3e+02 Score=24.72 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccccc--
Q psy10513 75 IDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWN-- 152 (239)
Q Consensus 75 e~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~~-- 152 (239)
...+.-.-..|+.+...-..++.+.- ...+.+. +.-++.+|+.|++.+.-++...-+...=..... ...|.
T Consensus 76 ~~~~~~~~~~E~ga~~~~a~~~r~~~--~~~i~n~---~~f~a~DelR~~q~~~~~~~~~~~~~~~~~~~~--k~~w~~~ 148 (233)
T PF02332_consen 76 KRHLGPLRHAEYGAQMASAYIARFAP--GTAIRNA---ATFQAMDELRHAQRQALLLKELAGAYPDFAGAA--KEAWLND 148 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-S--SHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCHCCCSCCCT--HHHHHHS
T ss_pred HHHcCCcchHHHHHHHHHHHHHhhcC--cHHHHHH---HHHHHhHHHHHHHHHHHHHhhhhhhCcccChHH--HHHHhhC
Confidence 33444444556666655555555554 2233333 333888999999999988876543221111111 11222
Q ss_pred ----cHHH--------------HHHHHHHHHHHHHHHHH-HHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q psy10513 153 ----TVED--------------LLTEALHMEKQLNEKLL-KLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTV 213 (239)
Q Consensus 153 ----s~~e--------------ale~AL~~Ek~vt~~l~-~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L 213 (239)
.+.+ .+...|..|--++..+. ++.+.|..++|..+..++.. +-.+..++.++....+..+
T Consensus 149 p~wq~~R~~vE~~~~~~Dw~E~~va~nlv~e~l~~~l~~~~~~~~A~~nGD~~~~~l~~~-~q~d~~r~~~~~~al~~~~ 227 (233)
T PF02332_consen 149 PAWQPLRRLVEDLLVTYDWFEAFVALNLVFEPLFTNLLFVEFDRLAAANGDFLTPTLTSS-IQSDEARHMRWGDALFKMA 227 (233)
T ss_dssp HHHHHHHHHHHHHTTSSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 2222 33344556666666544 45677889999999999887 8888888888887766543
No 99
>PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ]. Exosomes occur in both archaea and eukaryotes, and have a similar overall structure to each other and to bacterial/organelle PNPases (polynucleotide phosphorylases; 2.7.7.8 from EC) [], consisting of a barrel structure composed of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. There are two types of exosomes in eukaryotes, cytoplasmic exosomes that are responsible for 3'-5' exoribonuclease degradation of mRNAs, and nuclear exosomes that degrade pre-mRNAs (such as nonsense transcripts) and degrade rRNAs, snRNAs and snoRNAs. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. There are several accessory proteins that help degrade, unwind or polyadenylate RNA substrate before they enter the exosome. This entry represents the N-terminal domain of Rrp6 (exosome component 10 in humans), a nuclear exosome accessory factor that interacts with the bottom of the hexameric PH-ring opposite the cap. Rrp6 functions as a hydrolytic exonuclease, and is homologous to RNase-D in Escherichia coli. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0006396 RNA processing, 0000176 nuclear exosome (RNase complex)
Probab=41.88 E-value=50 Score=24.73 Aligned_cols=57 Identities=12% Similarity=0.254 Sum_probs=38.2
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccccccHHHHHHHHHH
Q psy10513 106 L-FGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALH 163 (239)
Q Consensus 106 l-~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~~s~~eale~AL~ 163 (239)
+ |+|+++...++..=..-+.+|+..+..+++.........+. ..|..+.+++...|+
T Consensus 22 ~dp~f~~~ld~~s~rll~l~n~ll~~~~~~~~~~~~~~~~d~d-~~~~~vvd~~D~LlE 79 (91)
T PF08066_consen 22 FDPEFAESLDEQSQRLLSLINSLLKSAGSKSNISSPDDVDDVD-ERWDSVVDVNDSLLE 79 (91)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccHH-HHHHHHHHHHHHHHH
Confidence 6 88999999999888888888888887766655444222232 256666665554443
No 100
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.79 E-value=2.1e+02 Score=24.27 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q psy10513 154 VEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTV 213 (239)
Q Consensus 154 ~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L 213 (239)
..+-|+.+..+|+.+...|-.+.+-| .++.+..-++. -|.|-..+|+.|+.++..+
T Consensus 10 f~~~LrD~y~aEkq~~kaL~kma~~~---~~~~Lka~~E~-Hl~ET~~qi~rLe~Vfe~~ 65 (167)
T COG3685 10 FIDTLRDIYAAEKQILKALPKMARRA---QYPELKAAIEK-HLEETKGQIERLEQVFERL 65 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 56778888999999999988887766 48899999998 6888888888888888774
No 101
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=41.17 E-value=51 Score=23.61 Aligned_cols=30 Identities=27% Similarity=0.180 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy10513 106 LFGFAKFFTHSYKEEIEHMEHLIAYLNKRG 135 (239)
Q Consensus 106 l~G~A~fF~~~A~EE~eHA~kLi~yl~~RG 135 (239)
+..++.||+++|.=|.++|..|-+....-.
T Consensus 25 ~~~l~~~~keRa~lE~~Yak~L~kl~~~~~ 54 (91)
T PF00611_consen 25 LEELASFFKERASLEEEYAKSLQKLAKKFK 54 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566899999999999999999988775543
No 102
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=39.79 E-value=1.9e+02 Score=27.42 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCcccc
Q psy10513 72 EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEW 151 (239)
Q Consensus 72 ~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~ 151 (239)
...++-|-.-...|+.....|--|+.-... .-|-++..|.-+|-+|-.||--|=+=+.+-|-.+++.-+.+-....|
T Consensus 78 ~~FidFLerSctaEFSGflLYKEl~rrlk~---~nP~lae~F~lMaRDEARHAGFlNkam~Df~l~lDLgfLtk~rkYTf 154 (357)
T PLN02508 78 QIFIEFLERSCTAEFSGFLLYKELGRRLKK---TNPVVAEIFTLMSRDEARHAGFLNKALSDFNLALDLGFLTKNRKYTF 154 (357)
T ss_pred HHHHHHHHhhhhhhcccchHHHHHHHhccc---CChHHHHHHHHhCchhHHHHhHHHHHHHHcCccccchhhcccCceee
Confidence 346788888899999999999999988763 35889999999999999999999999999999999999988765455
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHH---HHhHHHhHHHHHHHHHHHHH
Q psy10513 152 NTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLT---DFLEGRYLQEQVDAIKTLAD 208 (239)
Q Consensus 152 ~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~---~FLe~~fL~EQve~i~~L~~ 208 (239)
=.+.=++=...--||.--.+|=.|++.-+++-|.... +|++. +=+++-.|=+-+.-
T Consensus 155 F~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~Fe~-WCqDEnRHGd~Fa~ 213 (357)
T PLN02508 155 FKPKFIFYATYLSEKIGYWRYITIYRHLQANPDYQLYPIFKYFEN-WCQDENRHGDFFSA 213 (357)
T ss_pred eCcceeehhhHhhhhhhhhhHhHHHHHHHhCcccccchHHHHHHH-HhcccchhHHHHHH
Confidence 5677777778888999999999999888777665544 44443 44555555444443
No 103
>PRK10304 ferritin; Provisional
Probab=38.02 E-value=2.4e+02 Score=23.48 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q psy10513 153 TVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTT 212 (239)
Q Consensus 153 s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~ 212 (239)
.+.++|...+..|-.....|..+...+...+=+.++.|+.. =-.|+.+|-..|-++|..
T Consensus 5 ~i~~~Ln~qin~El~As~~Yl~ma~~~~~~gl~g~A~~f~~-qs~EE~~HA~kl~~~i~~ 63 (165)
T PRK10304 5 EMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLRR-HAQEEMTHMQRLFDYLTD 63 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999988877777777776 455666666666555544
No 104
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=37.51 E-value=71 Score=21.56 Aligned_cols=30 Identities=27% Similarity=0.087 Sum_probs=25.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10513 104 VALFGFAKFFTHSYKEEIEHMEHLIAYLNK 133 (239)
Q Consensus 104 v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~ 133 (239)
--+||.|..+..++..|.+|...+-+-.+.
T Consensus 11 ~i~Pg~aerI~~mae~eq~hR~~~e~~~l~ 40 (50)
T PF10097_consen 11 QILPGAAERIFAMAEKEQEHRHELEKKALK 40 (50)
T ss_pred hHCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999666544
No 105
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=37.43 E-value=2.7e+02 Score=23.97 Aligned_cols=127 Identities=16% Similarity=0.210 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccccccHHH
Q psy10513 77 KINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWNTVED 156 (239)
Q Consensus 77 ~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~~s~~e 156 (239)
.|-++..-|+.|...-+.+-.-|. +-..+-.-+-..+.||..|-....+.+..||- .+..|+++. |...+-
T Consensus 32 lLlDH~~CE~KAa~tAl~li~kY~----~~~~lv~km~~larEEL~HFeqV~eilq~RnI--~~~~i~asr---Ya~~l~ 102 (203)
T COG4445 32 LLLDHLHCELKAAQTALNLIRKYP----SNTDLVDKMVLLAREELHHFEQVLEILQARNI--PYVPIPASR---YAKGLL 102 (203)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--ccccCCccH---HHHHHH
Confidence 456778889999887665544444 23567777888899999999999999999984 444555554 332221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---------CCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhH
Q psy10513 157 LLTEALHMEKQLNEKLLKLHACASQ---------HGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRRT 216 (239)
Q Consensus 157 ale~AL~~Ek~vt~~l~~L~~lA~~---------~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~~ 216 (239)
+.-..-+-++-+-..+-..+-.|+. .-|-.+..|-.+ .|..+..| ++|++.....+
T Consensus 103 ~~~rt~EPqrliD~Livga~IEARScERfa~LaphldeelakFY~g-Ll~SEaRH---fqdYl~LA~qy 167 (203)
T COG4445 103 AAVRTHEPQRLIDKLIVGAYIEARSCERFAALAPHLDEELAKFYKG-LLRSEARH---FQDYLVLADQY 167 (203)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhhhhHHHHHhhcccchHHHHHHHHH-HHHHHHHH---HHHHHHHHHHH
Confidence 1111112222222222222222221 246677888877 77766555 34444444333
No 106
>PF03359 GKAP: Guanylate-kinase-associated protein (GKAP) protein; InterPro: IPR005026 The protein called postsynaptic density (PSD) is a specialised submembranous structure within which synaptic membrane proteins are linked to cytoskeleton and signalling proteins. Guanylate-kinase-associated protein (PSD-95/synapse-associated protein 90) is one of the major components of PSD, and functions as a scaffold protein for various ion channels and associated signalling molecules.; GO: 0007267 cell-cell signaling
Probab=36.38 E-value=3.7e+02 Score=25.32 Aligned_cols=101 Identities=16% Similarity=0.152 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--hHH
Q psy10513 110 AKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGD--ANL 187 (239)
Q Consensus 110 A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D--~~t 187 (239)
+.||+..-+.|.+....+..-.... .....-|.. ..+.+..|+-.|--+=..=...+..|+..+....+ ..|
T Consensus 171 g~yF~~ll~~E~~RL~~lC~~~e~~-----~~~~~lpee-~~~~ir~avGqa~LL~~qKf~QF~~L~~~~~~~~~~~~~t 244 (357)
T PF03359_consen 171 GHYFRKLLQSETERLEGLCAEWEKE-----EEENDLPEE-AKGLIRSAVGQARLLMSQKFKQFEGLCQQNENPSGEPPTT 244 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCCChh-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCcccCCCcc
Confidence 7899999999988777776655443 222223331 23334444444433333334667777777664322 233
Q ss_pred HHHhH--HHhHHHHHHHHHHHHHHHHHHhhH
Q psy10513 188 TDFLE--GRYLQEQVDAIKTLADLLTTVRRT 216 (239)
Q Consensus 188 ~~FLe--~~fL~EQve~i~~L~~~L~~L~~~ 216 (239)
+.=|+ |++|.=||+.++..=+-|..|+.=
T Consensus 245 ~~DL~GFWDmv~lqVedv~~kF~~L~~lk~n 275 (357)
T PF03359_consen 245 CQDLAGFWDMVYLQVEDVDKKFDELEKLKAN 275 (357)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33333 667888998888877777776643
No 107
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=35.46 E-value=1.5e+02 Score=20.41 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHH
Q psy10513 155 EDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLL 210 (239)
Q Consensus 155 ~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L 210 (239)
.+++...|..+|.....+...+-.| .++.++.+|.. .+.+.++.-.++-++.
T Consensus 3 ~~i~~d~L~~~K~~~~~y~~a~~E~---~np~lR~~l~~-~~~~~~~~~~~l~~~m 54 (64)
T PF07875_consen 3 KDIANDLLNSEKAAARNYATAALEC---ANPELRQILQQ-ILNECQQMQYELFNYM 54 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4567788999999888887766544 89999999998 8888777777666543
No 108
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=35.03 E-value=57 Score=23.86 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy10513 165 EKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRRTQLYLVD 222 (239)
Q Consensus 165 Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~~~g~ylfD 222 (239)
++.....+..|+..+.+.+ +.|.+=|.. +|.+..-....+..++..|...|+=++|
T Consensus 2 ~~~~~~~i~~Li~~gK~~G-~lT~~eI~~-~L~~~~~~~e~id~i~~~L~~~gI~Vvd 57 (82)
T PF03979_consen 2 IEQYEEAIKKLIEKGKKKG-YLTYDEIND-ALPEDDLDPEQIDEIYDTLEDEGIEVVD 57 (82)
T ss_dssp --HHHHHHHHHHHHHHHHS-S-BHHHHHH-H-S-S---HHHHHHHHHHHHTT----B-
T ss_pred cchhHHHHHHHHHHHhhcC-cCCHHHHHH-HcCccCCCHHHHHHHHHHHHHCCCEEec
Confidence 4456778889999997765 688888887 8888878889999999999998843333
No 109
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=34.47 E-value=2.5e+02 Score=22.64 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10513 74 CIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLN 132 (239)
Q Consensus 74 ve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~ 132 (239)
+.+.|-..+..|-.+...|.-+...+. ..+=.+...+|.....+|-+|+..|-.++.
T Consensus 83 ~~e~l~~~l~~E~~~~~~~~e~i~~A~--~~~D~~t~~ll~~~i~eee~h~~~l~~~l~ 139 (157)
T TIGR00754 83 VREMLEADLALELDVLNRLKEAIAYAE--EVRDYVSRDLLEEILEDEEEHIDWLETQLE 139 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999999999988887 456788999999999999999988877764
No 110
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=34.16 E-value=2.2e+02 Score=22.31 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=58.7
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc---cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC
Q psy10513 69 NFHEDCIDKINTQINDEIRSAYTYISMASF-CT---QDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIE 144 (239)
Q Consensus 69 n~s~eve~~LN~qIn~EL~As~~YlsmA~~-f~---~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~ 144 (239)
..-......||.+++.|....|.=..-..| |+ ..++.+..|++||.-.-.=..--...|..|+..+|+.-......
T Consensus 26 ~~~~~a~~~ln~~w~~~V~~~~~~~i~gRYPF~~~s~~dv~l~Df~~fF~p~G~ld~F~~~~L~~fvd~~~~~w~~~~~~ 105 (125)
T PF06744_consen 26 LVLQGARSYLNKAWQAEVYPFCRQAIAGRYPFDPDSSRDVSLADFARFFGPGGVLDQFFNQYLKPFVDTSGNPWRWRPGD 105 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCcceeCCCC
Confidence 345566788888888887766553222222 33 46889999999998776666667777888888888765555444
Q ss_pred CCCccccccHHHHHHHH
Q psy10513 145 APSKQEWNTVEDLLTEA 161 (239)
Q Consensus 145 ~p~~~~~~s~~eale~A 161 (239)
.....--.+.+..|+.|
T Consensus 106 ~~~~~~~~~~L~~~~~A 122 (125)
T PF06744_consen 106 GQGLGLSPAFLAQFQRA 122 (125)
T ss_pred CcCCCCCHHHHHHHHHH
Confidence 22111122355555544
No 111
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=33.45 E-value=2.6e+02 Score=22.79 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=28.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCC
Q psy10513 106 LFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAP 146 (239)
Q Consensus 106 l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p 146 (239)
+..+..+|.+...+..+-+.++.+|+..+|--...+.++.|
T Consensus 123 R~Dl~~~f~~~~~~~~~~~~~~~~l~~~KGwl~~pP~~~~~ 163 (166)
T PF11553_consen 123 RNDLRAFFMKFLMEALELYDKIVKLMKEKGWLERPPYIPDP 163 (166)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------B----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCC
Confidence 55699999999999999999999999998865554444443
No 112
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=33.16 E-value=1.4e+02 Score=25.17 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q psy10513 158 LTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTV 213 (239)
Q Consensus 158 le~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L 213 (239)
|+..-+-|-.....|..-...+ +|+.+..+|+. +..++.+|+.++++.|..+
T Consensus 5 ~RVnHAGE~gA~~IY~gQ~~~~---~~~~~~~~l~~-~~~~E~~Hl~~f~~~i~~~ 56 (165)
T cd01042 5 LRVNHAGEVGAVRIYRGQLAVA---RDPAVRPLIKE-MLDEEKDHLAWFEELLPEL 56 (165)
T ss_pred hhccccchHHHHHHHHHHHHHh---CCHHHHHHHHH-HHHHHHHHHHHHHHHHHHc
Confidence 3344445555555555544444 77999999997 9999999999999999888
No 113
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=30.02 E-value=48 Score=30.41 Aligned_cols=51 Identities=14% Similarity=0.335 Sum_probs=38.2
Q ss_pred HHHHHHHHH-HHHHHHHHHHHcCCccccCCCCCCCc--cccccHHHHHHHHHHH
Q psy10513 114 THSYKEEIE-HMEHLIAYLNKRGGQLRLTSIEAPSK--QEWNTVEDLLTEALHM 164 (239)
Q Consensus 114 ~~~A~EE~e-HA~kLi~yl~~RGG~v~l~~I~~p~~--~~~~s~~eale~AL~~ 164 (239)
+..+.|.++ .|+.++.|+..+||...+.+-..|.. ..|+-...+|+.||..
T Consensus 216 ~p~~~E~l~~daq~Il~yL~~~gG~mpf~DKSsPEdIk~~FgiSKg~FKrAiGg 269 (287)
T COG2996 216 RPRAHEMLDEDAQMILTYLESNGGFMPFNDKSSPEDIKATFGISKGQFKRAIGG 269 (287)
T ss_pred ccccHHhhhhhHHHHHHHHHHcCCccccCCCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 334445554 89999999999999999999888852 3466677777777653
No 114
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=28.68 E-value=4.5e+02 Score=23.85 Aligned_cols=87 Identities=9% Similarity=-0.059 Sum_probs=53.0
Q ss_pred HHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc--CCCC---CCCccccccHHHHHHHHHHHHH
Q psy10513 92 YISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRL--TSIE---APSKQEWNTVEDLLTEALHMEK 166 (239)
Q Consensus 92 YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l--~~I~---~p~~~~~~s~~eale~AL~~Ek 166 (239)
+-.+..|....--=|..+..|+++.|.=|.+.|..|-+....-.++-.- .... .....-|....+....+=.+|.
T Consensus 7 ~~~L~~~~~~~~~~le~~~~f~k~R~~iE~eYa~~L~~L~k~~~~k~~~~~~~e~~~~~~~~s~~~~~~e~~~~a~Q~~~ 86 (263)
T cd07678 7 LSILQTKQQRDAELLEDIRSYSKQRAAIEREYGQALQRLASQFLKRDWHRGGNETEMDRSVRTVWGAWREGTAATGQGRV 86 (263)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCchhhhhccccchHHHHHHHHHHHHHHHHH
Confidence 3344555554333577899999999999999999987655443332210 0000 0111246667777777777777
Q ss_pred HHHHHHHHHHHH
Q psy10513 167 QLNEKLLKLHAC 178 (239)
Q Consensus 167 ~vt~~l~~L~~l 178 (239)
.....+..++..
T Consensus 87 ~~~~~~~~~~~e 98 (263)
T cd07678 87 TRLEAYRRLRDE 98 (263)
T ss_pred HHHHHHHhhhhh
Confidence 776666666543
No 115
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=27.78 E-value=2.6e+02 Score=28.75 Aligned_cols=90 Identities=23% Similarity=0.275 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHcCCc---cccC---CCCCCCcccc----ccHHHHHHHHHH-HHHHHHHHHHHHHHH-HhhCCChHH
Q psy10513 120 EIEHMEHLIAYLNKRGGQ---LRLT---SIEAPSKQEW----NTVEDLLTEALH-MEKQLNEKLLKLHAC-ASQHGDANL 187 (239)
Q Consensus 120 E~eHA~kLi~yl~~RGG~---v~l~---~I~~p~~~~~----~s~~eale~AL~-~Ek~vt~~l~~L~~l-A~~~~D~~t 187 (239)
--.||+.|+++++.+=|. +++. ++..|..... ...+.=++.+|+ .|+.+++.|..+|.= -....||.+
T Consensus 110 ha~haRHLv~hlie~~Ged~pidlG~e~~v~aPi~~t~~G~kPktlgdle~~l~y~Eeqlt~~ls~~h~gqE~~~~dyeS 189 (772)
T COG1152 110 HAAHARHLVDHLIETFGEDLPIDLGSEVNVEAPIIETVTGIKPKTLGDLEAALEYAEEQLTQLLSAVHTGQEGSLLDYES 189 (772)
T ss_pred hhhhHHHHHHHHHHHhCccCccCCCcccccccchhhhhhCCCccchHHHHHHHHHHHHHHHHHHHHHhccCcccccchhH
Confidence 446899999998876554 3333 1223321100 012333444444 488899998888743 224579999
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHH
Q psy10513 188 TDFLEGRYLQEQVDAIKTLADLL 210 (239)
Q Consensus 188 ~~FLe~~fL~EQve~i~~L~~~L 210 (239)
..+.-. .|+.--.++..+..+.
T Consensus 190 kAlhaG-~~d~l~~EiaDiaqi~ 211 (772)
T COG1152 190 KALHAG-MIDHLGMEIADIAQIV 211 (772)
T ss_pred HHhhhh-hhhHHHHHHHHHHHHH
Confidence 888887 7777777777666543
No 116
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=26.47 E-value=3.3e+02 Score=25.62 Aligned_cols=78 Identities=17% Similarity=0.289 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHh--cccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCc--c-ccccHHHHHHHH
Q psy10513 87 RSAYTYISMASF--CTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSK--Q-EWNTVEDLLTEA 161 (239)
Q Consensus 87 ~As~~YlsmA~~--f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~--~-~~~s~~eale~A 161 (239)
...+.|-+.++. |.+. --++|++.-++-.+-+|.-|..-.+..++..-. ..|.. . --..+.++++.|
T Consensus 214 EGi~FysgFa~~~~l~r~-g~M~G~~~~i~~I~RDE~~H~~f~~~l~~~l~~-------e~p~~~~~~~~~~v~~l~~ea 285 (369)
T PRK07209 214 EGIFFYVGFTQILSLGRQ-NKMTGIAEQYQYILRDESMHLNFGIDLINQIKL-------ENPHLWTAEFQAEIRELIKEA 285 (369)
T ss_pred HHHHHHHHHHHHHHhhhc-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCcccccHHHHHHHHHHHHHH
Confidence 344444444443 3442 369999999999999999999766665544321 12221 0 123577899999
Q ss_pred HHHHHHHHHHH
Q psy10513 162 LHMEKQLNEKL 172 (239)
Q Consensus 162 L~~Ek~vt~~l 172 (239)
+++|......+
T Consensus 286 v~~E~~~~~~~ 296 (369)
T PRK07209 286 VELEYRYARDT 296 (369)
T ss_pred HHHHHHHHHHH
Confidence 99998765543
No 117
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=26.39 E-value=2e+02 Score=21.13 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCCCCcccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHH
Q psy10513 117 YKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWNT-VEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEG 193 (239)
Q Consensus 117 A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~~s-~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~ 193 (239)
..+-.+...++++|....+.... ...-.+.- ....+...+..-......+++.+++|++.+|..+..+.-.
T Consensus 14 y~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~ 85 (94)
T PF12862_consen 14 YSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALS 85 (94)
T ss_pred HHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 44555666677777766554332 00000110 2333444455556778899999999999999988777654
No 118
>PF03713 DUF305: Domain of unknown function (DUF305); InterPro: IPR005183 A domain that is found in small family of bacterial secreted proteins with no known function. It ia also found in Paramecium bursaria Chlorella virus 1 (PBCV-1). This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important.; PDB: 2QF9_B 3BT5_A.
Probab=26.28 E-value=3.4e+02 Score=21.66 Aligned_cols=102 Identities=10% Similarity=0.117 Sum_probs=51.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCc-cccc-------c--HHHHHH-------------HH
Q psy10513 105 ALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSK-QEWN-------T--VEDLLT-------------EA 161 (239)
Q Consensus 105 ~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~-~~~~-------s--~~eale-------------~A 161 (239)
.-|++-.+=.............+-.++...|+.........+.. .... + -...+. .-
T Consensus 27 ~~p~vr~lA~~I~~~Q~~ei~~m~~wl~~~~~~~~~~~~~~~~~~~~~~~~m~~m~~~~~~~~l~~~~g~~~D~~Fl~~M 106 (151)
T PF03713_consen 27 TDPEVRALAQQIIAAQQAEIAQMQAWLQSWGGPPPSPPMHATAGMDAMGAAMPGMMSDMMMAMLRAASGADFDRDFLQLM 106 (151)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHCT--SS-SST-------HHHHHHTT---HHHHHHHHHS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhccccccccccchhhhHhhhhhhhHHHHHHHhhccCchHHHHHHHHH
Confidence 35666666666666666677777778888887665443111100 0000 0 011111 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHH
Q psy10513 162 LHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLL 210 (239)
Q Consensus 162 L~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L 210 (239)
+.|-+.....-..+. ...+|+.+..+-+. ++..|..+|..|..+|
T Consensus 107 i~HHqgAi~MA~~~l---~~g~~~~~~~lA~~-ii~~Q~~EI~~m~~~L 151 (151)
T PF03713_consen 107 IPHHQGAIDMARAEL---KYGKDPEVRELAQD-IIASQTAEIEQMRAWL 151 (151)
T ss_dssp HHHHHHHHHHHHHHH---HH--SHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HhCCCHHHHHHHHH-HHHHHHHHHHHHHHhC
Confidence 112222222111111 24589999999998 9999999999999875
No 119
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.06 E-value=4.6e+02 Score=23.18 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=26.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy10513 105 ALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGG 136 (239)
Q Consensus 105 ~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG 136 (239)
-|..+..||++.|.=|.+.|..|.+-......
T Consensus 20 lLed~~~F~r~RaeIE~EYs~~L~kL~k~~~~ 51 (241)
T cd07656 20 LLADLQDYFRRRAEIELEYSRSLEKLADRFSS 51 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46678999999999999999999877655433
No 120
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.02 E-value=4.2e+02 Score=22.36 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=45.4
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy10513 67 LQNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRG 135 (239)
Q Consensus 67 rqn~s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RG 135 (239)
.++++.+=...|=..+..|=-|-.+||.+ |+ .|+++ .|+..|.-|.+|+....-.+-+-|
T Consensus 43 ~~plsdeE~nsLiyMrEEEKLARDVYL~L---Yn--kw~l~----IF~nIA~SEQ~HmDAVk~LlekYn 102 (189)
T COG4902 43 DSPLSDEEINSLIYMREEEKLARDVYLYL---YN--KWNLP----IFRNIAASEQEHMDAVKSLLEKYN 102 (189)
T ss_pred CCCCChHHHhhHHHHHHHHHHHhhHHhhh---hh--ccCcH----HHHHHHHhHHHHHHHHHHHHHHcC
Confidence 35677766677777778888898999875 44 68887 688999999999988765555543
No 121
>PRK05685 fliS flagellar protein FliS; Validated
Probab=24.93 E-value=1.7e+02 Score=23.30 Aligned_cols=55 Identities=27% Similarity=0.402 Sum_probs=35.9
Q ss_pred ccHHHHHHHHHHHHH--HHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q psy10513 152 NTVEDLLTEALHMEK--QLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVR 214 (239)
Q Consensus 152 ~s~~eale~AL~~Ek--~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~ 214 (239)
..++.-|..+|.+|+ .+...|..||..+.. .+++- -+....+.++++..+|..|+
T Consensus 62 ~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~-------~L~~A-~~~~d~~~l~ev~~il~~Lr 118 (132)
T PRK05685 62 INIINGLRNSLDMEKGGEVAKNLSALYDYMIR-------RLLEA-NLRNDVQAIDEVEGLLREIK 118 (132)
T ss_pred HHHHHHHHhhcCCccccHHHHHHHHHHHHHHH-------HHHHH-HHhCCHHHHHHHHHHHHHHH
Confidence 347777888888887 888888888876533 44444 45555555555555555554
No 122
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=24.69 E-value=3.6e+02 Score=22.24 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=41.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q psy10513 151 WNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTT 212 (239)
Q Consensus 151 ~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~ 212 (239)
...+.++|..+|+.+..+.-.++..|-...-..=+.+..+|+. +..+..++++.++.-|..
T Consensus 20 ~~~~~~~Ln~~LA~~~~l~~k~~~~hW~v~G~~f~~lH~~lee-~~~~~~~~~D~iAERi~~ 80 (162)
T PRK09448 20 KKATIELLNQQLAQFIDLSLITKQAHWNMKGANFIAVHEMLDG-FRTALEDHLDTMAERAVQ 80 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHH-HHHHHHHHhHHHHHHHHH
Confidence 3457889999999999888888888877755444455666665 566555666666544433
No 123
>COG3943 Virulence protein [General function prediction only]
Probab=24.18 E-value=2.9e+02 Score=25.14 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10513 111 KFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSK-QEWNTVEDLLTEALHMEKQLNEKLLKLHACASQ 181 (239)
Q Consensus 111 ~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~-~~~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~ 181 (239)
--|+..|-+ .|-+|+++ |-..+-..++.|+. +.|+..++-++..-+.|+.|.-..++|+.+|..
T Consensus 100 ~qfrqwatq------~lqeyl~k-gfvmdderlk~~~~gdy~~emlerirdiraser~vy~rv~eifa~aad 164 (329)
T COG3943 100 TQFRQWATQ------TLQEYLIK-GFVMDDERLKNPPVGDYFKEMLERIRDIRASERRVYLRVREIFALAAD 164 (329)
T ss_pred cHHHHHHHH------HHHHHHHh-hcccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 346666644 47788876 65555555665543 568889999999999999999999999999853
No 124
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.49 E-value=5.2e+02 Score=22.88 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=41.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-------CChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q psy10513 151 WNTVEDLLTEALHMEKQLNEKLLKLHACASQH-------GDANLTDFLEGRYLQEQVDAIKTLADLLTTVR 214 (239)
Q Consensus 151 ~~s~~eale~AL~~Ek~vt~~l~~L~~lA~~~-------~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~ 214 (239)
-...+..++.|-..|..++..+..+...-..+ ..-.+..-|.. |+.-|++..+.+-.++..++
T Consensus 159 vdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~e-y~~~~ie~erk~l~~lE~~r 228 (230)
T cd07625 159 VDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIRE-YTLRKIEYERKKLSLLERIR 228 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcc
Confidence 44577778888888888888777776553322 33334455665 88888888877766665554
No 125
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=23.07 E-value=1.4e+02 Score=23.33 Aligned_cols=56 Identities=21% Similarity=0.178 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q psy10513 157 LLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTV 213 (239)
Q Consensus 157 ale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L 213 (239)
.|..+|+.+..+.-.++..|-.....+-+.+..+|+. ...+..++++.+..-|-.|
T Consensus 2 ~Ln~~lA~~~~~~~~~~~~HW~v~G~~f~~lh~~l~e-~~~~~~~~~D~lAERi~~l 57 (139)
T cd01043 2 ALNQLLADLYVLYLKLKNYHWNVKGPNFFALHELFEE-LYDELREAIDEIAERIRAL 57 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCccCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHc
Confidence 4566677777777777766666655556666777776 6666666666665544433
No 126
>KOG3633|consensus
Probab=21.83 E-value=5.4e+02 Score=22.41 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC--CCCCCC
Q psy10513 70 FHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLT--SIEAPS 147 (239)
Q Consensus 70 ~s~eve~~LN~qIn~EL~As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~--~I~~p~ 147 (239)
+.-+|+++=-..++.|..--|+..+|... ....-++..++-||+.-....+++..|-..|.+. .+..+.
T Consensus 54 lelrVE~LRk~A~~le~eKe~lL~s~~~I---------~~~~~M~~~se~eREEi~l~~~Rl~~Rt~TVev~VeT~Rn~~ 124 (219)
T KOG3633|consen 54 LELRVEKLRKDALNLEEEKEYLLMSMDLI---------KSNEMMQNMSEAEREEIILYLQRLSSRTATVEVRVETVRNNS 124 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHhhhhHHHHHHHHHHHhcccceEEEEEeccCChH
Confidence 44456666667777777777766666443 3456788999999999999999999999887653 343333
Q ss_pred ccccccHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhCCCh---HHHHHhHH---HhHHHHHHHHHHHHHHH
Q psy10513 148 KQEWNTVEDLLTEAL-----------HMEKQLNEKLLKLHACASQHGDA---NLTDFLEG---RYLQEQVDAIKTLADLL 210 (239)
Q Consensus 148 ~~~~~s~~eale~AL-----------~~Ek~vt~~l~~L~~lA~~~~D~---~t~~FLe~---~fL~EQve~i~~L~~~L 210 (239)
. .++|+.|- ..=-...-.+..|+..|..+-|+ +-..|..- =-+++|-.--+.|+.++
T Consensus 125 Q------~~sL~~at~lIDev~~m~~~~ig~ak~~l~tl~~aCSse~~p~GpvdqkF~si~igCaldDQK~IKrRLe~Lm 198 (219)
T KOG3633|consen 125 Q------EDSLSQATVLIDEVIKMGDPVIGRAKCQLYTLNAACSSEMDPSGPVDQKFESILIGCALDDQKNIKRRLEALM 198 (219)
T ss_pred H------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 1 22222221 11112233455567777777665 33444322 13577888888888888
Q ss_pred HHHhh
Q psy10513 211 TTVRR 215 (239)
Q Consensus 211 ~~L~~ 215 (239)
.+|+.
T Consensus 199 ~~ien 203 (219)
T KOG3633|consen 199 AYIEN 203 (219)
T ss_pred HHHHH
Confidence 87775
No 127
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=21.81 E-value=6e+02 Score=22.94 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=37.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccccccHHHHHHHHHH
Q psy10513 106 LFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALH 163 (239)
Q Consensus 106 l~G~A~fF~~~A~EE~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~~s~~eale~AL~ 163 (239)
...+..||+.+|.=|...|.+|...-..-+|.+... .+++++..++...+.
T Consensus 21 C~el~~f~~eRA~IE~~YAk~L~~lakk~~~~~e~g-------~eyGTL~~sw~~~~~ 71 (258)
T cd07681 21 CNDLVSCFQERAKIEKGYAQQLSDWARKWRGIVEKG-------PQYGTLEKAWHAFLT 71 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcc-------cccChHHHHHHHHHH
Confidence 456899999999999999999999998766655311 146666666666554
No 128
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=21.03 E-value=1.9e+02 Score=22.51 Aligned_cols=53 Identities=15% Similarity=0.357 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHhhCCChHHHHHhHHHhHHHHHHHHHHHHHHHHHHh
Q psy10513 154 VEDLLTEALHME--KQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVR 214 (239)
Q Consensus 154 ~~eale~AL~~E--k~vt~~l~~L~~lA~~~~D~~t~~FLe~~fL~EQve~i~~L~~~L~~L~ 214 (239)
++..|...|..| -.+...|..||..+. ...++. .+....+.++++..+|..|+
T Consensus 58 Ii~~L~~~Ld~e~g~eia~~L~~lY~y~~-------~~L~~A-~~~~d~~~l~~v~~~l~~l~ 112 (122)
T PF02561_consen 58 IITELQSSLDFEKGGEIADNLFRLYDYMI-------RQLVQA-NLKKDPERLDEVIRILEELR 112 (122)
T ss_dssp HHHHHHHTCCTTTTHHHHHHHHHHHHHHH-------HHHHHH-HHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCcHHHHHHHHHHHHHH-------HHHHHH-HHhCCHHHHHHHHHHHHHHH
Confidence 445555555555 567777777776553 234444 45555555555555555554
No 129
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=20.79 E-value=5.2e+02 Score=21.86 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCccccCCCCCCC----------ccccccHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCChHHHHHh
Q psy10513 123 HMEHLIAYLNKRGGQLRLTSIEAPS----------KQEWNTVEDLLTEALHMEKQLNEKLLKLHAC-ASQHGDANLTDFL 191 (239)
Q Consensus 123 HA~kLi~yl~~RGG~v~l~~I~~p~----------~~~~~s~~eale~AL~~Ek~vt~~l~~L~~l-A~~~~D~~t~~FL 191 (239)
...++|..+..-|- .+..|..+. ...-.+..+-++...++...|...+.+|-+. +....|.++...|
T Consensus 44 ~~L~~I~~l~~~Gm--~i~~i~~~~~~~l~~~~l~~~G~~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll 121 (175)
T PRK13182 44 QLLEYVKSQIEEGQ--NMQDTQKPSSNDVEETQVNTIVQNISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLL 121 (175)
T ss_pred HHHHHHHHHHHcCC--CHHHHHHHhhhhhhHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 34556777766664 333443211 0112246677888888888999999998744 5566788888888
Q ss_pred HH
Q psy10513 192 EG 193 (239)
Q Consensus 192 e~ 193 (239)
+.
T Consensus 122 ~h 123 (175)
T PRK13182 122 QH 123 (175)
T ss_pred Hh
Confidence 75
No 130
>KOG1953|consensus
Probab=20.09 E-value=9.5e+02 Score=26.42 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcccCCccchhHHHHHHHHHHHH---------------HHHHHHHHHHHHHcCCccccCCCCCCCccccc
Q psy10513 88 SAYTYISMASFCTQDNVALFGFAKFFTHSYKEE---------------IEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWN 152 (239)
Q Consensus 88 As~~YlsmA~~f~~~~v~l~G~A~fF~~~A~EE---------------~eHA~kLi~yl~~RGG~v~l~~I~~p~~~~~~ 152 (239)
+..+|..||..+. ++|+..-..||.+.+--- +.|-.-|+.-+...|....+. +..|....|.
T Consensus 482 q~qi~s~~a~myr--e~g~~rkqaf~~rlsv~~~L~~T~~~~~~~~dyKt~~~~l~~lLe~~g~e~~~~-~d~~sq~~w~ 558 (1235)
T KOG1953|consen 482 QNQIKSTMAGMYR--EVGASRKQAFFKRLSVCNILPLTSEICQEYGDYKTDGSLLNPLLEKWGSEAKIN-VDDPSQSTWS 558 (1235)
T ss_pred HHHHHhhHHHHHH--HHHHHHHHHHHHHHHHhhhhhcccchhccCccccccHHHHHHHHHhccccccCC-cCccccccch
Confidence 6778888888887 667776667776554322 223333444444444332221 1122222455
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHH
Q psy10513 153 TVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLT 188 (239)
Q Consensus 153 s~~eale~AL~~Ek~vt~~l~~L~~lA~~~~D~~t~ 188 (239)
. + -...|++++.+|...+|+...
T Consensus 559 ~-L------------Q~kvL~eii~~a~ragd~~aa 581 (1235)
T KOG1953|consen 559 N-L------------QFKVLNEIISLADRAGDYRAA 581 (1235)
T ss_pred h-h------------HHHHHHHHHHHHHhcCCHHHH
Confidence 3 1 135688899999999998754
Done!