RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10513
(239 letters)
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage,
CAGE-like protein, plant, iron, metal-binding,
oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A
Length = 212
Score = 196 bits (499), Expect = 2e-63
Identities = 71/202 (35%), Positives = 107/202 (52%), Gaps = 20/202 (9%)
Query: 33 KPCKETKPKSKKSSEPTQSSQHSPDSLGKTERQTLQNFHEDCIDKINTQINDEIRSAYTY 92
+P +E K + Q+S Q + ++ +N QIN E +Y Y
Sbjct: 16 EPFEEVKKELDLVPTVPQASLAR------------QKYVDESESAVNEQINVEYNVSYVY 63
Query: 93 ISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAP----SK 148
+M ++ +DNVAL G AKFF S +EE EH E L+ Y NKRGG+++L SI P
Sbjct: 64 HAMFAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSDFDH 123
Query: 149 QEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLAD 208
+ + AL +EK NEKLL LH+ A+++GD L DF+E YL EQV+AIK +++
Sbjct: 124 ADKGDALHAMELALSLEKLTNEKLLNLHSVATKNGDVQLADFVETEYLGEQVEAIKRISE 183
Query: 209 LLTTVRRTQ----LYLVDRDLM 226
+ +RR ++ D+ L+
Sbjct: 184 YVAQLRRVGKGHGVWHFDQMLL 205
>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva
pertusa}
Length = 204
Score = 195 bits (497), Expect = 3e-63
Identities = 70/202 (34%), Positives = 101/202 (50%), Gaps = 21/202 (10%)
Query: 33 KPCKETKPK-SKKSSEPTQSSQHSPDSLGKTERQTLQNFHEDCIDKINTQINDEIRSAYT 91
+P E + + S + P S +H +C IN QIN E +Y
Sbjct: 10 QPFSEVQGELSTVTQAPVTDSYAR------------VEYHIECEAAINEQINIEYTISYV 57
Query: 92 YISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAP----S 147
Y ++ S+ +DNV L GFAKFF + EE EH L+ Y KRGG++ L + AP +
Sbjct: 58 YHALHSYFARDNVGLPGFAKFFKEASDEEREHAHMLMDYQTKRGGRVELKPLAAPEMEFA 117
Query: 148 KQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLA 207
+ + AL +EK +KL L A A +H DA L DF+EG L EQVDA+K A
Sbjct: 118 NDDKGEALYAMELALSLEKLNFQKLQALQAIADKHKDAALCDFVEGGLLSEQVDAVKEHA 177
Query: 208 DLLTTVRRTQ----LYLVDRDL 225
++ +RR +YL+D++L
Sbjct: 178 VYVSQLRRVGKGVGVYLLDQEL 199
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1
PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A
Length = 173
Score = 192 bits (489), Expect = 2e-62
Identities = 70/169 (41%), Positives = 103/169 (60%), Gaps = 7/169 (4%)
Query: 65 QTLQNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHM 124
Q QNFH+DC +N +N + S+Y Y+SMAS+ +D+VAL FAKFF +EE EH
Sbjct: 4 QVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEHA 63
Query: 125 EHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGD 184
E LI Y N+RGG++ L S+E P + +W + L AL ++K +N+ LL LHA A+ D
Sbjct: 64 EKLIEYQNQRGGRVFLQSVEKPERDDWANGLEALQTALKLQKSVNQALLDLHAVAADKSD 123
Query: 185 ANLTDFLEGRYLQEQVDAIKTLADLLTTVRRT-------QLYLVDRDLM 226
++TDFLE YL E V+ IK L D +T++++ YL ++ +
Sbjct: 124 PHMTDFLESPYLSESVETIKKLGDHITSLKKLWSSHPGMAEYLFNKHTL 172
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme
protein, iron storage, iron, metal-binding,
oxidoreductase, phosphorylation; 1.5A {Homo sapiens}
PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A
2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Length = 183
Score = 191 bits (488), Expect = 3e-62
Identities = 68/174 (39%), Positives = 102/174 (58%), Gaps = 7/174 (4%)
Query: 65 QTLQNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHM 124
Q QN+H+D IN QIN ++ ++Y Y+SM+ + +D+VAL FAK+F H EE EH
Sbjct: 8 QVRQNYHQDSEAAINRQINLDLYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHA 67
Query: 125 EHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGD 184
E L+ N+RGG++ L I+ P +W + + + ALH+EK +N+ LL+LH A+ D
Sbjct: 68 EKLMKLQNQRGGRIFLQDIQKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKND 127
Query: 185 ANLTDFLEGRYLQEQVDAIKTLADLLTTVRRT-------QLYLVDRDLMSGKFS 231
+L DF+E YL EQV AIK L D +T +R+ YL D+ + +
Sbjct: 128 PHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSDN 181
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron,
metal-binding, oxidoreductase; 1.35A {Rana catesbeiana}
PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A
3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A
Length = 176
Score = 190 bits (485), Expect = 7e-62
Identities = 67/169 (39%), Positives = 96/169 (56%), Gaps = 7/169 (4%)
Query: 65 QTLQNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHM 124
Q QN+H DC +N +N E+ ++YTY SM +F +D+VAL A+FF EE EH
Sbjct: 4 QVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHA 63
Query: 125 EHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGD 184
E + Y NKRGG++ L I+ P + EW + + AL +EK +N+ LL LH A+ D
Sbjct: 64 EKFMKYQNKRGGRVVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVD 123
Query: 185 ANLTDFLEGRYLQEQVDAIKTLADLLTTVRRT-------QLYLVDRDLM 226
+L DFLE YL+EQV IK + D +T ++R YL D+ +
Sbjct: 124 PHLCDFLESEYLEEQVKHIKRIGDFITNLKRLGLPENGMGEYLFDKHSV 172
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal
binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1
PDB: 1sq3_A 3kx9_A
Length = 173
Score = 180 bits (460), Expect = 5e-58
Identities = 47/170 (27%), Positives = 91/170 (53%), Gaps = 9/170 (5%)
Query: 67 LQNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEH 126
+ + E ++ +N QIN EI SAY Y+SMAS+ D++ L GF+ + ++EE+ H
Sbjct: 1 MASISEKMVEALNRQINAEIYSAYLYLSMASYF--DSIGLKGFSNWMRVQWQEELMHAMK 58
Query: 127 LIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDAN 186
+ ++++RGG+++L ++E P EW++ E + +++ +L A Q D
Sbjct: 59 MFDFVSERGGRVKLYAVEEP-PSEWDSPLAAFEHVYEHEVNVTKRIHELVEMAMQEKDFA 117
Query: 187 LTDFLEGRYLQEQVDAIKTLADLLTTVRRTQ-----LYLVDRDLMSGKFS 231
+FL+ Y+ EQV+ + D++ +R L +D++L +F+
Sbjct: 118 TYNFLQW-YVAEQVEEEASALDIVEKLRLIGEDKRALLFLDKELSLRQFT 166
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin,
iron storage, metal-binding; 1.15A {Equus caballus} PDB:
2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A
2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X
3fi6_A 3o7r_A 2w0o_A 1hrs_A* ...
Length = 174
Score = 180 bits (459), Expect = 7e-58
Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 65 QTLQNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHM 124
Q QN+ + +N +N +R++YTY+S+ + +D+VAL G FF +++++
Sbjct: 3 QIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRQLAQQKMQGA 62
Query: 125 EHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGD 184
E L+ N+RGG+ ++ PS+ EW T D + A+ +EK LN+ LL LHA S D
Sbjct: 63 ERLLKMQNQRGGRALFQDLQKPSQDEWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQAD 122
Query: 185 ANLTDFLEGRYLQEQVDAIKTLADLLTTVRR-------TQLYLVDRDLM 226
+L DFLE +L E+V IK + D LT ++R YL +R +
Sbjct: 123 PHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEYLFERLTL 171
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding
protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A
Length = 191
Score = 177 bits (451), Expect = 1e-56
Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 7/171 (4%)
Query: 65 QTLQNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHM 124
Q QN+ D +N+ +N ++++YTY+S+ + +D+VAL G + FF +E+ E
Sbjct: 4 QIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGY 63
Query: 125 EHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGD 184
E L+ N+RGG+ I+ P++ EW D + A+ +EK+LN+ LL LHA S D
Sbjct: 64 ERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSARTD 123
Query: 185 ANLTDFLEGRYLQEQVDAIKTLADLLTTVRRT-------QLYLVDRDLMSG 228
+L DFLE +L E+V IK + D LT + R YL + +S
Sbjct: 124 PHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLSSKGSLSS 174
>3qz3_A Ferritin; structural genomics, the center for structural genomics
of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A
{Vibrio cholerae o1 biovar el tor}
Length = 184
Score = 177 bits (451), Expect = 2e-56
Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 12/170 (7%)
Query: 64 RQTLQNFH---EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEE 120
Q F + ++ +N QIN E S+ Y+ M+++C ++ G A+F EE
Sbjct: 2 NAMNQEFFMLSQAMVEHLNEQINLEFFSSNLYLQMSAWC--EDKGFDGAAEFLRAHAVEE 59
Query: 121 IEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACAS 180
++HM+ L Y+++ G L +I AP + ++ ++ ++ E E+++ +++ KL A
Sbjct: 60 MQHMQRLFTYVSETGALPILGAIAAP-RHDFASLGEVFRETYQHEQKITQQINKLAHVAF 118
Query: 181 QHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRRTQ-----LYLVDRDL 225
D + +FL+ Y+ EQ + K +L + L+ +D+DL
Sbjct: 119 TSQDYSTFNFLQW-YVAEQHEEEKLFKGILDKLELVGEDGKALFFIDKDL 167
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon,
entry channels, thermostability, hyperthermophIle,
ferroxidase center; 2.75A {Pyrococcus furiosus} PDB:
2jd7_0 2jd8_0 2x17_0
Length = 174
Score = 175 bits (447), Expect = 5e-56
Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 9/159 (5%)
Query: 72 EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYL 131
E + +N Q+N E+ SAY Y +MA++ +++ L GFA + +EEI H Y+
Sbjct: 4 ERMLKALNDQLNRELYSAYLYFAMAAYF--EDLGLEGFANWMKAQAEEEIGHALRFYNYI 61
Query: 132 NKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFL 191
R G++ L I P +EW + A EK +++ + +L A A + D + FL
Sbjct: 62 YDRNGRVELDEIPKP-PKEWESPLKAFEAAYEHEKFISKSIYELAALAEEEKDYSTRAFL 120
Query: 192 EGRYLQEQVDAIKTLADLLTTVRRTQ-----LYLVDRDL 225
E ++ EQV+ ++ +L ++ + L+++D++L
Sbjct: 121 EW-FINEQVEEEASVKKILDKLKFAKDSPQILFMLDKEL 158
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu
initiative, PSI, joint center for structural genomics,
META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1
PDB: 1z4a_A*
Length = 176
Score = 175 bits (446), Expect = 6e-56
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 65 QTLQNFH------EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYK 118
+ + H E +N Q+N EI S+Y Y+SMA++ D GFA + +
Sbjct: 5 KIHHHHHHMMVISEKVRKALNDQLNREIYSSYLYLSMATYF--DAEGFKGFAHWMKKQAQ 62
Query: 119 EEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHAC 178
EE+ H Y+ +RGG++ L +IE P WN ++D AL E+ + + + +
Sbjct: 63 EELTHAMKFYEYIYERGGRVELEAIEKP-PSNWNGIKDAFEAALKHEEFVTQSIYNILEL 121
Query: 179 ASQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRRTQ-----LYLVDRDL 225
AS+ D FL+ ++ EQV+ + ++L + + ++ +DR L
Sbjct: 122 ASEEKDHATVSFLKW-FVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYL 172
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase;
2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Length = 189
Score = 175 bits (446), Expect = 8e-56
Identities = 34/160 (21%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 68 QNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHL 127
+ + QI++E +A Y+++A + ++ L AK F EE H L
Sbjct: 5 EGPKTKFHALMQEQIHNEFTAAQQYVAIAVYFDSED--LPQLAKHFYSQAVEERNHAMML 62
Query: 128 IAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANL 187
+ +L R ++ + ++ + +++ + L AL E+ + +++ +L A A GD
Sbjct: 63 VQHLLDRDLRVEIPGVDTV-RNQFDRPREALALALDQERTVTDQVGRLTAVARDEGDFLG 121
Query: 188 TDFLEGRYLQEQVDAIKTLADLLTTVRR--TQLYLVDRDL 225
F++ +LQEQ++ + +A L+ R L+ ++ +
Sbjct: 122 EQFMQW-FLQEQIEEVALMATLVRVADRAGANLFELENFV 160
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A
{Trichoplusia NI} SCOP: a.25.1.1
Length = 191
Score = 174 bits (443), Expect = 2e-55
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Query: 64 RQTLQNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEH 123
+ H C + + QI E+ ++ Y++M + ++D V GFA+ F + EE EH
Sbjct: 11 PKDWITMHRSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAASEEREH 70
Query: 124 MEHLIAYLNKRGGQLRLTS----IEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACA 179
LI YL RG S + P++ W + L AL ME + + + +
Sbjct: 71 AMKLIEYLLMRGELTNDVSSLLQVRPPTRSSWKGGVEALEHALSMESDVTKSIRNVIKAC 130
Query: 180 ---SQHGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRR-------TQLYLVDRDLMSG 228
S+ D +L D+L G +L+EQ + LA +T+++ ++ D+ L+
Sbjct: 131 EDDSEFNDYHLVDYLTGDFLEEQYKGQRDLAGKASTLKKLMDRHEALGEFIFDKKLLGI 189
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A
{Campylobacter jejuni} SCOP: a.25.1.1
Length = 167
Score = 171 bits (436), Expect = 1e-54
Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Query: 70 FHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIA 129
++ + +N QIN E+ +A Y+SM+S+C +++ L G F EE +H + LI
Sbjct: 2 LSKEVVKLLNEQINKEMYAANLYLSMSSWCYENS--LDGAGAFLFAHASEESDHAKKLIT 59
Query: 130 YLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTD 189
YLN+ + L ++ P +Q + ++ D+ + E+ + + + L H D + +
Sbjct: 60 YLNETDSHVELQEVKQP-EQNFKSLLDVFEKTYEHEQFITKSINTLVEHMLTHKDYSTFN 118
Query: 190 FLEGRYLQEQVDAIKTLADLLTTVRRTQ-----LYLVDRDLMSGKFS 231
FL+ Y+ EQ + ++ ++ LYL D+ + + S
Sbjct: 119 FLQW-YVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKNIALS 164
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A
{Pseudo-nitzschia multiseries} PDB: 3e6r_A
Length = 168
Score = 171 bits (436), Expect = 1e-54
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 9/165 (5%)
Query: 72 EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYL 131
E+ +D N Q+ E ++ Y+S + + Q++ G A + EE EH + +
Sbjct: 3 EELLDLFNRQVTQEFTASQVYLSASIWFDQND--WEGMAAYMLAESAEEREHGLGFVDFA 60
Query: 132 NKRGGQLRLTSIEAP-SKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDF 190
NKR + L ++ AP S EW++ ED+ L +E+ LL L AS D + F
Sbjct: 61 NKRNIPIELQAVPAPVSCAEWSSPEDVWQSILELEQANTRSLLNLAEAASTCHDFAVMAF 120
Query: 191 LEGRYLQEQVDAIKTLADLLTTVRRTQ-----LYLVDRDLMSGKF 230
L + +QV+ + +L V L +D G
Sbjct: 121 LNP-FHLQQVNEEDKIGSILAKVTDENRTPGLLRSLDVVSFLGPC 164
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli}
SCOP: a.25.1.1
Length = 165
Score = 167 bits (424), Expect = 1e-52
Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 9/160 (5%)
Query: 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAY 130
+ I+K+N Q+N E+ S+ Y M+++C+ G A F +EE+ HM+ L Y
Sbjct: 3 KPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHT--FEGAAAFLRRHAQEEMTHMQRLFDY 60
Query: 131 LNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDF 190
L G R+ ++E+P E++++++L E E+ + +K+ +L A + D +F
Sbjct: 61 LTDTGNLPRINTVESP-FAEYSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNF 119
Query: 191 LEGRYLQEQVDAIKTLADLLTTVRRTQ-----LYLVDRDL 225
L+ Y+ EQ + K ++ + LY +D++L
Sbjct: 120 LQW-YVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKEL 158
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A
{Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A
3egm_A
Length = 181
Score = 167 bits (425), Expect = 1e-52
Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 9/168 (5%)
Query: 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAY 130
+D I +N Q+N E+ S+ Y+SM+S+C + L G F EE EH + LI +
Sbjct: 17 SKDIIKLLNEQVNKEMNSSNLYMSMSSWCYTHS--LDGAGLFLFDHAAEEYEHAKKLIIF 74
Query: 131 LNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDF 190
LN+ ++LTSI AP + ++ + + +A E+ ++E + + A + D +F
Sbjct: 75 LNENNVPVQLTSISAP-EHKFEGLTQIFQKAYEHEQHISESINNIVDHAIKSKDHATFNF 133
Query: 191 LEGRYLQEQVDAIKTLADLLTTVRRTQ-----LYLVDRDLMSGKFSMH 233
L+ Y+ EQ + D+L + LYL D+ + S
Sbjct: 134 LQW-YVAEQHEEEVLFKDILDKIELIGNENHGLYLADQYVKGIAKSRK 180
>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A
{Trichoplusia NI} SCOP: a.25.1.1
Length = 212
Score = 143 bits (361), Expect = 8e-43
Identities = 33/178 (18%), Positives = 70/178 (39%), Gaps = 20/178 (11%)
Query: 68 QNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHL 127
H + ++ + +Y Y+ A++ GF+K F E +
Sbjct: 31 YGSHGNVATELQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKLFKKLSDEAWSKTIDI 90
Query: 128 IAYLNKRGGQLRLTSIEAP-----SKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQH 182
I ++ KRG ++ + N + L +AL +K+L E+ +H A+++
Sbjct: 91 IKHVTKRGDKMNFDQHSTMKTERKNYTAENHELEALAKALDTQKELAERAFYIHREATRN 150
Query: 183 G----DANLTDFLEGRYLQEQVDAIKTLADLLTTVRR-----------TQLYLVDRDL 225
D + +LE ++++ + I+TLA + +++ LY+ D L
Sbjct: 151 SQHLHDPEIAQYLEEEFIEDHAEKIRTLAGHTSDLKKFITANNGHDLSLALYVFDEYL 208
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding
protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP:
a.25.1.1 PDB: 2fl0_A* 1sof_A*
Length = 155
Score = 64.6 bits (157), Expect = 3e-13
Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 7/152 (4%)
Query: 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAY 130
+ I +N + +E+ + Y A ++ L K H +E++H + LI
Sbjct: 4 DKIVIQHLNKILGNELIAINQYFLHARMY--EDWGLEKLGKHEYHESIDEMKHADKLIKR 61
Query: 131 LNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDF 190
+ G L + +++L L +E+ L A GD +
Sbjct: 62 ILFLEGLPNLQELGKL--LIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASREL 119
Query: 191 LEGRYLQEQVDAIKTLADLLTTVRRT--QLYL 220
LE L+ + D I L L + + + YL
Sbjct: 120 LE-DILESEEDHIDWLETQLDLIDKIGLENYL 150
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural
genomics consort TBSGC, metal binding protein; HET: HEM;
2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*
Length = 174
Score = 60.8 bits (147), Expect = 9e-12
Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 7/152 (4%)
Query: 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAY 130
D + +N Q+ E+ + Y + DN A +E+ H E +
Sbjct: 6 DPDVLRLLNEQLTSELTAINQYFLHSKMQ--DNWGFTELAAHTRAESFDEMRHAEEITDR 63
Query: 131 LNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDF 190
+ G I + + T+ + L +E + +L + D
Sbjct: 64 ILLLDGLPNYQRIGSL--RIGQTLREQFEADLAIEYDVLNRLKPGIVMCREKQDTTSAVL 121
Query: 191 LEGRYLQEQVDAIKTLADLLTTVRRT--QLYL 220
LE + + ++ + I L L + + +LY
Sbjct: 122 LE-KIVADEEEHIDYLETQLELMDKLGEELYS 152
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein;
HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1
Length = 161
Score = 58.5 bits (141), Expect = 5e-11
Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 7/152 (4%)
Query: 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAY 130
I+ +N + E+ + Y ++ L AK EE+ H + +IA
Sbjct: 4 DAKVIEFLNAALRSELTAISQYWVHFRLQ--EDWGLAKMAKKSREESIEEMGHADKIIAR 61
Query: 131 LNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDF 190
+ G L ++ + + L L E + + ++ GD +
Sbjct: 62 ILFLEGHPNLQKLDPL--RIGEGPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNI 119
Query: 191 LEGRYLQEQVDAIKTLADLLTTVRRT--QLYL 220
E + ++ + L ++ R Q +
Sbjct: 120 FE-SLITDEEGHVDFLETQISLYDRLGPQGFA 150
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron
storage, iron homeost iron release, iron mobilization;
1.55A {Pseudomonas aeruginosa} PDB: 3r2h_A 3r2l_A 3r2m_A
3r2o_A 3r2r_A 3r2s_A
Length = 154
Score = 57.3 bits (138), Expect = 1e-10
Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 10/147 (6%)
Query: 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAY 130
H + ID +NT + E+ + Y + ++ + H +EE +H + L+
Sbjct: 4 HPEVIDYLNTLLTGELAARDQYFIHSRMY--EDWGFSKLYERLNHEMEEETQHADALLRR 61
Query: 131 LNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDF 190
+ G R+ + ++L L +E+ + L K A QH D D
Sbjct: 62 ILLLEGTPRMRPDDIHPGTTV---PEMLEADLKLERHVRAALAKGIALCEQHKDFVSRDI 118
Query: 191 LEGRYLQEQ----VDAIKTLADLLTTV 213
L+ L + ++ L+ +
Sbjct: 119 LK-AQLADTEEDHAYWLEQQLGLIARM 144
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics,
seattle structural genomics center for infectious
disease; HET: HEM; 1.81A {Brucella melitensis biovar
ABORTUS2308}
Length = 182
Score = 57.0 bits (137), Expect = 3e-10
Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 7/152 (4%)
Query: 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAY 130
I+++N + E+ + Y ++ AK EE+ H + LI
Sbjct: 25 EPKVIERLNEALFLELGAVNQYWLHYRLL--NDWGYTRLAKKEREESIEEMHHADKLIDR 82
Query: 131 LNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDF 190
+ G L ++ + V+++L L E + + GD
Sbjct: 83 IIFLEGFPNLQTVSPL--RIGQNVKEVLEADLKGEYDARASYKESREICDKLGDYVSKQL 140
Query: 191 LEGRYLQEQVDAIKTLADLLTTVRRT--QLYL 220
+ L ++ I L L + + + Y
Sbjct: 141 FD-ELLADEEGHIDFLETQLDLLAKIGGERYG 171
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A
{Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A*
3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A*
3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Length = 158
Score = 56.1 bits (135), Expect = 3e-10
Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 7/152 (4%)
Query: 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAY 130
I+ +N + +E+ + Y A N L H +E++H + I
Sbjct: 4 DTKVINYLNKLLGNELVAINQYFLHARMF--KNWGLKRLNDVEYHESIDEMKHADRYIER 61
Query: 131 LNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDF 190
+ G L + + E VE++L L +E + L + A D D
Sbjct: 62 ILFLEGLPNLQDLGKLNIGE--DVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDM 119
Query: 191 LEGRYLQEQVDAIKTLADLLTTVRRT--QLYL 220
+ L+++ I L L +++ Q YL
Sbjct: 120 MI-EILRDEEGHIDWLETELDLIQKMGLQNYL 150
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme,
metal binding protein; HET: HEM; 2.80A {Rhodobacter
sphaeroides}
Length = 161
Score = 51.1 bits (122), Expect = 2e-08
Identities = 24/145 (16%), Positives = 48/145 (33%), Gaps = 6/145 (4%)
Query: 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAY 130
I+ +N + E+ + Y ++ A EE+ H + LI
Sbjct: 4 DAKVIEYLNAALRSELTAVSQYWLHYRLQ--EDWGFGSIAHKSRKESIEEMHHADKLIQR 61
Query: 131 LNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDF 190
+ GG L + + T+ + L L E ++ + D
Sbjct: 62 IIFLGGHPNLQRLNPLRIGQ--TLRETLDADLAAEHDARTLYIEARDHCEKVRDYPSKML 119
Query: 191 LEGRYLQEQ--VDAIKTLADLLTTV 213
E E+ +D ++T DL+ ++
Sbjct: 120 FEELIADEEGHIDYLETQIDLMGSI 144
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM
Fe-coproporphyrin III cofactor, iron storage-electron
complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans}
SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Length = 179
Score = 46.5 bits (110), Expect = 1e-06
Identities = 19/145 (13%), Positives = 45/145 (31%), Gaps = 6/145 (4%)
Query: 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAY 130
I+ +N E+ + + Y++ + D++ A +E+ H E+
Sbjct: 9 KAKVIEVLNKARAMELHAIHQYMNQHY--SLDDMDYGELAANMKLIAIDEMRHAENFAER 66
Query: 131 LNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDF 190
+ + GG+ + V + E E + + GD
Sbjct: 67 IKELGGEPTTQKEGKVVTGQ--AVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARL 124
Query: 191 LEGRYLQEQ--VDAIKTLADLLTTV 213
E +EQ + + + + +
Sbjct: 125 FERIIEEEQAHLTYYENIGSHIKNL 149
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 9e-06
Identities = 37/263 (14%), Positives = 81/263 (30%), Gaps = 69/263 (26%)
Query: 23 STRHEPTKENKPCKETKPKS----------KKSSEPTQSSQHSPDSLG------KTERQT 66
+T + ++ T + + P + +P L + T
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 67 LQNFHEDCIDKINTQIN--------DEIRSAYTYISMASFCTQDNV-----ALFGFAKFF 113
N+ DK+ T I E R + +S+ F + L + +
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--F--PPSAHIPTILL---SLIW 396
Query: 114 THSYKEEIEH-MEHLIAY--LNKRG--GQLRLTSIEAPSKQEWNTVEDL---LTEALHME 165
K ++ + L Y + K+ + + SI K + L + + ++
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 166 KQL-NEKLLKL------------HACASQHGDA---------NLTDFLEG--RYLQEQVD 201
K ++ L+ H +H + + FLE R+ +
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-RFLEQKIRHDSTAWN 515
Query: 202 AIKTLADLLTTVRRTQLYLVDRD 224
A ++ + L ++ + Y+ D D
Sbjct: 516 ASGSILNTLQQLKFYKPYICDND 538
Score = 43.7 bits (102), Expect = 4e-05
Identities = 38/250 (15%), Positives = 80/250 (32%), Gaps = 45/250 (18%)
Query: 20 KCESTRHEPTKENKPCKETKPKSKKSSEPTQSSQHSPDSLGKTERQTLQN-FHEDCIDKI 78
C S K + P S+ + + + S+ R+ L++ +E+C+
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-- 248
Query: 79 NTQINDEIRSAYTYISMASFC-----TQD-NVALFGFAKFFTHSYKEEI-------EHME 125
+ +++A + + C T+ V F A TH + E
Sbjct: 249 ---VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 126 HLIAYLNKRGGQLR---------LTSIEAPSKQE----WNTVEDLLTEALH--ME---KQ 167
L+ YL+ R L SI A S ++ W+ + + + L +E
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 168 LNEKLLK--LHACASQHGDANLT-DFLEGRYLQEQVDAIKTLADLLTTVRRTQLYLVDRD 224
L + + A++ L + + + + L + + LV++
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL--HKYS---LVEKQ 420
Query: 225 LMSGKFSMHG 234
S+
Sbjct: 421 PKESTISIPS 430
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold,
structural genomic protein structure initiative; 2.00A
{Bacillus anthracis str}
Length = 149
Score = 40.5 bits (95), Expect = 9e-05
Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 7/144 (4%)
Query: 72 EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYL 131
++ I+ +N + E + Y A+ T + FF +E H +L +
Sbjct: 9 KELIEGLNEDLAGEYSAIIMYNHNAA--TVSGIYRQVLKPFFESEISDEQGHALYLAEKI 66
Query: 132 NKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFL 191
GG + ++ V ++L A E + ++ K A+ L L
Sbjct: 67 KTLGGTPTTIPLRV---KQAEDVREMLEYARQSEYETIKRYEKRKEQAANLNMTELVVKL 123
Query: 192 EGRYLQEQ--VDAIKTLADLLTTV 213
E E ++ + L + V
Sbjct: 124 EDMIADETNHMEELDRLLNDKAMV 147
>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein,
bacterioferritin, hydrogen peroxide, metal binding
protein, archaea; 2.4A {Sulfolobus solfataricus}
Length = 188
Score = 36.5 bits (84), Expect = 0.003
Identities = 19/137 (13%), Positives = 44/137 (32%), Gaps = 12/137 (8%)
Query: 72 EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYL 131
+ +DK+ E + Y Y + + G + + E+ H E + +
Sbjct: 24 KKLVDKLVKATAAEFTTYYYYTILR--MHLTGMEGEGLKEIAEDARLEDRLHFELMTQRI 81
Query: 132 NKRGGQ--------LRLTSI-EAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQH 182
+ GG +++ +A + W +++L L E+ ++
Sbjct: 82 YELGGGLPRDIRQLADISACSDAYLPENWKDPKEILKVLLEAEQCAIRTWKEVCDMT-YG 140
Query: 183 GDANLTDFLEGRYLQEQ 199
D D + +E
Sbjct: 141 KDPRTYDLAQRILQEEI 157
>2wzl_A Phosphoprotein; viral protein, rabies, virion, chaperone,
nucleoprotein, RNA replication; 2.10A {Mokola virus}
Length = 303
Score = 33.7 bits (77), Expect = 0.040
Identities = 13/66 (19%), Positives = 25/66 (37%)
Query: 8 SSNDPPPKKDKPKCESTRHEPTKENKPCKETKPKSKKSSEPTQSSQHSPDSLGKTERQTL 67
S+N + K + EPT E++ S+ +P H+PD + ++
Sbjct: 130 STNIMTSGERDTKSIQIQTEPTASVSSGNESRHDSESMHDPNDKKDHTPDHDVVPDIESS 189
Query: 68 QNFHED 73
+ E
Sbjct: 190 TDKGEI 195
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory
for structural genomics, secsg, protein structure
initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP:
a.25.1.1
Length = 175
Score = 32.0 bits (72), Expect = 0.086
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 15/96 (15%)
Query: 82 INDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLT 141
I EI + Y S+A + + + +EE +H L ++ +
Sbjct: 29 IKAEIGAREFYKSLAEKIKIEALK-----EKINWLAEEEKKHEALLRKLYSQMFPGKEVV 83
Query: 142 SIE----------APSKQEWNTVEDLLTEALHMEKQ 167
+ A ++ + DL+ A+ E+
Sbjct: 84 FPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEI 119
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron,
oxidative stress, metal transport; 2.30A {Bacteroides
fragilis}
Length = 170
Score = 31.6 bits (72), Expect = 0.14
Identities = 21/166 (12%), Positives = 52/166 (31%), Gaps = 14/166 (8%)
Query: 59 LGKTERQTLQNF--HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHS 116
+ K + LQ + ID++N +++E + Y Y A + F
Sbjct: 1 MAKESVKILQGKLDVKSLIDQLNAALSEEWLAYYQYWVGALVV--EGAMRADVQGEFEEH 58
Query: 117 YKEEIEHMEHLIAYLNKRGG-------QLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLN 169
+EE H + + + + G + + LL + + E+
Sbjct: 59 AEEERHHAQLIADRIIELEGVPVLDPKKWFELARCKYDSPTAFDSVSLLNQNVSSERCAI 118
Query: 170 EKLLKLHACASQHGDANLTDFLEGRYLQEQ--VDAIKTLADLLTTV 213
+ ++ + D D + +E+ ++ + +
Sbjct: 119 LRYQEIANFTNG-KDYTTCDIAKHILAEEEEHEQDLQDYLTDIARM 163
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.33
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 165 EKQLNEKL---LKLHACAS 180
EKQ +KL LKL+A S
Sbjct: 18 EKQALKKLQASLKLYADDS 36
Score = 26.5 bits (57), Expect = 5.7
Identities = 5/18 (27%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Query: 43 KKSSEPTQSS--QHSPDS 58
K++ + Q+S ++ DS
Sbjct: 19 KQALKKLQASLKLYADDS 36
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 29.9 bits (68), Expect = 0.45
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 121 IEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACAS 180
IE +E + L + LR+ + P VE E K++ + +
Sbjct: 6 IEAVEEMERLLREASSILRVEPAKLPKT-----VERFFEEWKDQRKEIERLKSVIADLWA 60
Query: 181 QHGDANLTDFLEGRYLQEQVDA-IKTLADLLTTVR 214
+F + + E VDA ++ L L +
Sbjct: 61 DILMERAEEFDSMKVVAEVVDADMQALQKLAERLA 95
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal
transport; 2.10A {Helicobacter pylori} PDB: 4evd_A
3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A
Length = 164
Score = 29.7 bits (67), Expect = 0.55
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
++LT ++ +K +D+ E L K L ++ +L A + GD + + +
Sbjct: 93 IKLTRVKEETK-TSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTYADDQ 148
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase,
iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB:
2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A*
2xkq_A*
Length = 165
Score = 29.2 bits (66), Expect = 0.83
Identities = 8/57 (14%), Positives = 19/57 (33%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
+ ++ T+E+ L + + + L K + + GD+ D
Sbjct: 88 SENSQLKEVLGDYNVTIEEQLARVVEVFRYLAALFQKGFDVSDEEGDSVTNDIFNVA 144
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 29.4 bits (65), Expect = 0.84
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 6 KGSSNDPPPKKDKPKCESTRHEPTKENKPCKETKPKSKKSSEPTQSSQHSPDS 58
+ D P D P + P + N P P ++ +PD+
Sbjct: 223 NPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNNP--DNPDNGDNNNSDNPDA 273
Score = 27.1 bits (59), Expect = 5.6
Identities = 9/41 (21%), Positives = 12/41 (29%)
Query: 11 DPPPKKDKPKCESTRHEPTKENKPCKETKPKSKKSSEPTQS 51
D P D P + P N P + S P +
Sbjct: 234 DNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDNPDAA 274
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase,
phosphorylation, staurosporine, transferase; HET: STU;
2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Length = 278
Score = 29.5 bits (67), Expect = 0.95
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 153 TVEDLLTEALHMEKQLN-EKLLKLHACASQHGDANL--TDFLEG----RYLQEQVDAIKT 205
T + L EA M QL L++L + T+++ YL+ + ++
Sbjct: 57 TAQAFLAEASVM-TQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLG 115
Query: 206 LADLL 210
LL
Sbjct: 116 GDCLL 120
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 1.1
Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 39/131 (29%)
Query: 122 EHMEHLIAYLNKR---GGQLRLTSIEAPSKQEWNTVEDLLT---EALHMEKQLNEKLLKL 175
E ++ + N G Q+ ++ + N V ++ ++L+ LN L K
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAK----NLV---VSGPPQSLY---GLNLTLRKA 396
Query: 176 HACASQHGDANLTDFLE------GRYLQEQVDAIKTLA----DLLTTVRRTQLYLVDRDL 225
A + D + F E R+L + LL L+++DL
Sbjct: 397 KAPSGL--DQSRIPFSERKLKFSNRFL-------PVASPFHSHLLVPASD----LINKDL 443
Query: 226 MSGKFSMHGND 236
+ S + D
Sbjct: 444 VKNNVSFNAKD 454
Score = 29.2 bits (65), Expect = 1.3
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 122 EHMEHLIAYLNKRGGQLRLTSIEA-----PSKQ-----EWNTVEDLLTEALHMEKQLNEK 171
E +++++ + KR G L +E ++Q + + D +T L+ K
Sbjct: 1824 EALQYVVERVGKRTGWL----VEIVNYNVENQQYVAAGDLRAL-DTVTNVLNFIKLQKID 1878
Query: 172 LLKLHACAS 180
+++L S
Sbjct: 1879 IIELQKSLS 1887
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport;
2.50A {Treponema pallidum} SCOP: a.25.1.1
Length = 156
Score = 28.5 bits (64), Expect = 1.1
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
L L+ I ++ T+ L + L+ + + A++ GDA +
Sbjct: 84 LALSGIA-EETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDI 139
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold,
structural genomics, center for structural genomics of
infectious diseases; 1.99A {Campylobacter jejuni}
Length = 152
Score = 28.5 bits (64), Expect = 1.3
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
+ +K + T +++ + L + KL+ A + D F +
Sbjct: 76 MENAKSPKVAK-DCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQEN 131
>1tjo_A Iron-rich DPSA-homolog protein; ferritin, low-iron, metal binding
protein; 1.60A {Halobacterium salinarum} SCOP: a.25.1.1
PDB: 1moj_A 1tk6_A 1tko_A 1tkp_A
Length = 182
Score = 28.5 bits (64), Expect = 1.3
Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
S++ + + + L + + + E + A GD L
Sbjct: 100 QAEASVDVEDE-DVYDIRTSLANDMAIYGDIIEATREHTELAENLGDHATAHMLREG 155
>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus
furiosus}
Length = 345
Score = 28.9 bits (64), Expect = 1.5
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
Query: 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAY 130
E+ ++ + I E+ + Y MA + +NV K +EE H+ +A
Sbjct: 17 KEELMEILRLAIIAELDAINLYEQMARYSEDENVR-----KILLDVAREEKAHVGEFMAL 71
Query: 131 LNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEK 171
L + + V++L H+ E+
Sbjct: 72 LLNLDPEQVTELKGG-----FEEVKELTGIEAHINDNKKEE 107
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A
{Bacillus anthracis} SCOP: a.25.1.1
Length = 146
Score = 28.0 bits (63), Expect = 1.5
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
L +S+ + + E+++ ++ L ++L + A + GDA D L
Sbjct: 76 LATSSVNEGT--SKESAEEMVQTLVNDYSALIQELKEGMEVAGEAGDATSADMLLAI 130
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 29.0 bits (65), Expect = 1.5
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 148 KQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEG----RYLQEQVDAI 203
K + E L EA M+K +EKL++L+A S+ +T+++ +L+ +
Sbjct: 217 KPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKY 276
Query: 204 KTLADLL 210
L L+
Sbjct: 277 LRLPQLV 283
>2c41_A DPS family DNA-binding stress response protein;
iron-binding/oxidation protein, DPS (DNA-binding
proteins from starved cells); HET: PG4 PGE; 1.81A
{Thermosynechococcus elongatus}
Length = 158
Score = 28.1 bits (63), Expect = 1.5
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
L++ ++ S Q TV+ ++ EA+ + + ++ + A++ GD D
Sbjct: 81 LKVATVTPSSGQL--TVKQMIEEAIANHELIITEMHQDAEIATEAGDIGTADLYTRL 135
>2wlu_A DPS-like peroxide resistance protein; DNA-binding, oxidoreductase;
1.94A {Streptococcus pyogenes} PDB: 2wla_A
Length = 175
Score = 28.1 bits (63), Expect = 1.6
Identities = 8/57 (14%), Positives = 16/57 (28%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
+ + ++ TV L + + L+ + GDA D
Sbjct: 98 SKHSKLDEAKGTYDKTVAQHLARLVEVYLYLSSLYQVGLDITDEEGDAGTNDLFTAA 154
>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from
starved cells), ferroxidase center, mutagenesis study;
2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A
2bjy_A 2iy4_A 2bkc_A
Length = 156
Score = 28.1 bits (63), Expect = 1.6
Identities = 10/57 (17%), Positives = 22/57 (38%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
L S+E + T++ L+ + + + L ++ + + GD D L
Sbjct: 79 LENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAF 135
>2pyb_A NAPA, neutrophil activating protein; ferritin, DPS, four-helix
bundle, metal transport; 2.60A {Borrelia burgdorferi}
Length = 151
Score = 28.1 bits (63), Expect = 1.8
Identities = 3/57 (5%), Positives = 19/57 (33%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
++ + I+ + + + + ++ + + + GD + ++
Sbjct: 76 MKKSFIKELDIESTSNFLPSMESIVCSLTEILKNIFGMRKLIDTAGDYGTANIMDDI 132
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A*
3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A*
3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A*
3ad6_A* 3kmm_A* 1qpd_A* ...
Length = 279
Score = 28.3 bits (64), Expect = 2.0
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 148 KQEWNTVEDLLTEALHMEKQLN-EKLLKLHACASQHGDANLTDFLEG----RYLQEQVDA 202
KQ + + L EA M KQL ++L++L+A +Q +T+++E +L+
Sbjct: 46 KQGSMSPDAFLAEANLM-KQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGI 104
Query: 203 IKTLADLL 210
T+ LL
Sbjct: 105 KLTINKLL 112
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor,
ATP-binding, nucleotide-binding, oncogene, TRAN; HET:
B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A*
1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A*
3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A*
3oy3_A* 2hiw_A* 2v7a_A* ...
Length = 288
Score = 28.4 bits (64), Expect = 2.0
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 23/96 (23%)
Query: 148 KQEWNTVEDLLTEALHMEKQLN-EKLLKLHACASQ------------HGDANLTDFLEGR 194
K++ VE+ L EA M K++ L++L ++ +G NL D+L R
Sbjct: 47 KEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYG--NLLDYL--R 101
Query: 195 YLQEQVDAIKTLADLLTTVRRTQLYL-----VDRDL 225
Q + L + T + YL + RDL
Sbjct: 102 ECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDL 137
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 28.5 bits (64), Expect = 2.0
Identities = 22/91 (24%), Positives = 28/91 (30%), Gaps = 20/91 (21%)
Query: 152 NTVEDLLTEALHMEKQLN-EKLLKLHACASQHGDA-----------NLTDFLEGRYLQEQ 199
T + L EA M QL L++L + +L D+L R
Sbjct: 228 ATAQAFLAEASVM-TQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYL--RSRGRS 284
Query: 200 VDAIKTLADLLTTVRRTQLYL-----VDRDL 225
V L V YL V RDL
Sbjct: 285 VLGGDCLLKFSLDVCEAMEYLEGNNFVHRDL 315
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 28.7 bits (64), Expect = 2.1
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 148 KQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEG----RYLQEQVDAI 203
K + E L EA M+K +EKL++L+A S+ +T+++ +L+ +
Sbjct: 300 KPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKY 359
Query: 204 KTLADLL 210
L L+
Sbjct: 360 LRLPQLV 366
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 28.2 bits (62), Expect = 2.1
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 12 PPPKKDKPKCESTRHEPTKENKPCKETKPKSKKSSEP 48
P + K ++ + P + +E K K ++P
Sbjct: 64 RPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKP 100
Score = 26.7 bits (58), Expect = 6.9
Identities = 11/56 (19%), Positives = 16/56 (28%)
Query: 12 PPPKKDKPKCESTRHEPTKENKPCKETKPKSKKSSEPTQSSQHSPDSLGKTERQTL 67
P + +P + P + KP K + KK K E L
Sbjct: 60 PQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRL 115
>2c2u_A DPS, DNA-binding stress response protein; DNA-binding protein,
iron; 1.1A {Deinococcus radiodurans} PDB: 2c2f_A 2f7n_A
Length = 207
Score = 28.2 bits (63), Expect = 2.2
Identities = 5/57 (8%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
R ++++ P ++ + + + ++ + + D D G
Sbjct: 131 ARYSTVQVP-QETVRDARTQVADLVQDLSRVGKGYRDDSQACDEANDPVTADMYNGY 186
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 28.1 bits (63), Expect = 2.6
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 148 KQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEG----RYLQEQVDAI 203
K +VE L EA M+ ++KL+KLHA ++ +T+F+ +L+ +
Sbjct: 221 KPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAKGSLLDFLKSDEGSK 280
Query: 204 KTLADLL 210
+ L L+
Sbjct: 281 QPLPKLI 287
>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A
{Streptococcus pyogenes}
Length = 199
Score = 27.8 bits (62), Expect = 2.7
Identities = 8/57 (14%), Positives = 16/57 (28%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
+ + ++ TV L + + L+ + GDA D
Sbjct: 114 SKHSKLDEAKGTYDKTVAQHLARLVEVYLYLSSLYQVGLDITDEEGDAGTNDLFTAA 170
>2vxx_A Starvation induced DNA binding protein; stress response protein,
DPS, oxidation, iron binding, ferroxidase centre; HET:
PG4; 2.40A {Synechococcus elongatus}
Length = 192
Score = 27.8 bits (62), Expect = 2.8
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
L + +L+ L E+ + L + A GD +
Sbjct: 99 AALCCFTPEPE-GAFNCRQMLSNDLQAEQAIIGVLRQQATQAESLGDRATAYLYDQI 154
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU
genomics, center for structural genomics of infectious
DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Length = 159
Score = 27.3 bits (61), Expect = 2.8
Identities = 6/57 (10%), Positives = 16/57 (28%), Gaps = 2/57 (3%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
L+ I+ + + + L + + A + GD + +
Sbjct: 89 LKAAQIKEHTDSI--DGRSSMQGLVDGFSILLHQQRDILELAGETGDEGTSALMSDY 143
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A
{Brevibacillus brevis} SCOP: a.25.1.1
Length = 149
Score = 27.3 bits (61), Expect = 2.8
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
L SI+ + + ++++ ++ L +L A + D D L+
Sbjct: 79 LEEASIKEAT--GGESAAEMVSSVVNDFVDLVGELKVARDVADEADDEATADMLDAI 133
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A
{Bacillus anthracis} SCOP: a.25.1.1
Length = 142
Score = 27.3 bits (61), Expect = 3.3
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
L ++SI+ + E T E ++ + + + +L K A D +D L G
Sbjct: 72 LEISSIQEAAYGE--TAEGMVEAIMKDYEMMLVELKKGMEIAQNSDDEMTSDLLLGI 126
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 27.8 bits (62), Expect = 3.3
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 148 KQEWNTVEDLLTEALHMEKQLN-EKLLKLHACASQHGDANL-TDFLEG----RYLQEQVD 201
K++ VE+ L EA M K++ L++L ++ + T+F+ YL+E
Sbjct: 254 KEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNR 312
Query: 202 AIKTLADLL 210
+ LL
Sbjct: 313 QEVSAVVLL 321
>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection
from oxidative damage, DNA-binding, iron- binding
protein; 1.45A {Agrobacterium tumefaciens} SCOP:
a.25.1.1 PDB: 3ge4_A*
Length = 162
Score = 26.9 bits (60), Expect = 3.7
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
T ++A + + D L + ++ + K + + GD D
Sbjct: 88 SSTTKLKAY-PTDIYKIHDHLDALIERYGEVANMIRKAIDDSDEAGDPTTADIFTAA 143
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase;
HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A*
2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Length = 327
Score = 27.7 bits (62), Expect = 3.9
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 16/69 (23%)
Query: 155 EDLLTEALHMEKQLN-EKLLKLHACASQ------------HGDANLTDFLEGRYLQEQVD 201
D L EAL + + N + +++ + Q GD L FL +
Sbjct: 78 LDFLMEALII-SKFNHQNIVRCIGVSLQSLPRFILMELMAGGD--LKSFLRETRPRPSQP 134
Query: 202 AIKTLADLL 210
+ + DLL
Sbjct: 135 SSLAMLDLL 143
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding
protein, DPS, dodecameric, ferritin; 2.0A {Bacillus
subtilis}
Length = 153
Score = 26.9 bits (60), Expect = 4.3
Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
SI + + +++ ++ KQ++ + + A ++ D D G
Sbjct: 83 TEHASITDGGNET--SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADLFVGL 137
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich,
structural genomics, PSI, protein structure initiative;
2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB:
1u0r_A 1y3i_A* 1y3h_A
Length = 307
Score = 27.3 bits (61), Expect = 4.4
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 95 MASFCTQDNVALFGFAKFFTHSYKEEI-EHMEHLIAYLNKRGGQLRLTSIEAPSKQEWNT 153
M + +V L H+ ++E E + L LR+ S EA + +
Sbjct: 1 MTAH---RSVLLVV------HTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHL 51
Query: 154 VEDLLTE 160
D +
Sbjct: 52 APDDMRA 58
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein;
ZP_00055496.1, COG1633: uncharacterized conSer protein;
HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum}
SCOP: a.25.1.8
Length = 167
Score = 27.0 bits (59), Expect = 4.8
Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 12/96 (12%)
Query: 82 INDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKR-GGQLRL 140
I E +A Y+ +A N A F + H + + +L
Sbjct: 14 IALETEAAERYVELADMMEAHNNL--DTATVFRDMARFSTLHGDEIKQRSRALELPKLMS 71
Query: 141 TSIEAPSKQEW---------NTVEDLLTEALHMEKQ 167
+ E T L A E +
Sbjct: 72 WQYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIR 107
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain,
transferase-transferase inhibit complex; HET: PTR 0NT;
1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A*
3eyh_A*
Length = 302
Score = 27.3 bits (61), Expect = 5.2
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 152 NTVEDLLTEALHMEKQLN-EKLLKLHACASQHGDANL---TDFLEG----RYLQEQVDAI 203
N + DL E + + L E ++K ++ G + +FL YL + + I
Sbjct: 65 NHIADLKKEIEIL-RNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKI 123
Query: 204 KTLADLL 210
L L
Sbjct: 124 -NLKQQL 129
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor,
receptor tyrosine kinase, spirocyc kinase domain,
phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus
musculus}
Length = 323
Score = 26.9 bits (60), Expect = 5.6
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 26/86 (30%)
Query: 144 EAPSKQEWNTVEDLLTEALHMEKQLN-EKLLKLHACASQ------------------HGD 184
+ + + +E+ L EA M K+ + + KL + + HGD
Sbjct: 62 DIIASSD---IEEFLREAACM-KEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGD 117
Query: 185 ANLTDFLEGRYLQEQVDAIKTLADLL 210
L FL + E + L L+
Sbjct: 118 --LHAFLLASRIGENPFNL-PLQTLV 140
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding,
glycoprotein, membrane, nucleotide-binding,
phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Length = 367
Score = 27.0 bits (60), Expect = 6.4
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 16/69 (23%)
Query: 155 EDLLTEALHMEKQLN-EKLLKLHACASQ------------HGDANLTDFLEGRYLQEQVD 201
D L EAL + + N + +++ + Q GD L FL +
Sbjct: 119 LDFLMEALII-SKFNHQNIVRCIGVSLQSLPRFILLELMAGGD--LKSFLRETRPRPSQP 175
Query: 202 AIKTLADLL 210
+ + DLL
Sbjct: 176 SSLAMLDLL 184
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein;
1.85A {Staphylococcus aureus subsp}
Length = 156
Score = 26.1 bits (58), Expect = 7.8
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 138 LRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
L + ++ +K + E ++ E ++++L A GD D G
Sbjct: 78 LEQSIVKEAAKGY--SAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGM 132
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP
binding, transferase-transfera inhibitor complex; HET:
046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A*
3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A*
3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A*
Length = 295
Score = 26.5 bits (59), Expect = 8.3
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 10/67 (14%)
Query: 152 NTVEDLLTEALHMEKQLN-EKLLKLHACASQHGDANL---TDFLEG----RYLQEQVDAI 203
+ D E + K L + ++K G NL ++L YLQ+ + I
Sbjct: 53 EHLRDFEREIEIL-KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI 111
Query: 204 KTLADLL 210
LL
Sbjct: 112 -DHIKLL 117
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 26.6 bits (59), Expect = 9.6
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 117 YKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQL 168
Y+ + E AY++ RL E + N + + + + +EK++
Sbjct: 178 YECTGIYKEACTAYVDFMISVARLIRQEERLPIDENQLALEMNKVMELEKEI 229
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.368
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,339,460
Number of extensions: 179584
Number of successful extensions: 421
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 95
Length of query: 239
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 148
Effective length of database: 4,160,982
Effective search space: 615825336
Effective search space used: 615825336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.4 bits)