RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10513
(239 letters)
>d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana)
[TaxId: 8400]}
Length = 173
Score = 146 bits (369), Expect = 6e-45
Identities = 69/171 (40%), Positives = 97/171 (56%), Gaps = 7/171 (4%)
Query: 63 ERQTLQNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIE 122
+ Q QNFH DC IN +N E+ ++YTY+SMA + +D++AL AKFF EE E
Sbjct: 1 DSQVRQNFHRDCEAAINRMVNMELYASYTYLSMAFYFDRDDIALHNVAKFFKEQSHEERE 60
Query: 123 HMEHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQH 182
H E L+ NKRGG++ L ++ P + EW + + AL +EK +N+ LL LH S
Sbjct: 61 HAEKLMKDQNKRGGRIVLQDVQKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKVGSDK 120
Query: 183 GDANLTDFLEGRYLQEQVDAIKTLADLLTTVRR-------TQLYLVDRDLM 226
D +L DFLE Y +EQV +IK L D +T ++R YL D+ M
Sbjct: 121 VDPHLCDFLETEYPEEQVKSIKQLGDYITNLKRLGLPQNGMGEYLFDKHTM 171
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana)
[TaxId: 8400]}
Length = 171
Score = 146 bits (369), Expect = 7e-45
Identities = 70/169 (41%), Positives = 103/169 (60%), Gaps = 7/169 (4%)
Query: 65 QTLQNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHM 124
Q QNFH+DC +N +N + S+Y Y+SMAS+ +D+VAL FAKFF +EE EH
Sbjct: 2 QVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEHA 61
Query: 125 EHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGD 184
E LI Y N+RGG++ L S+E P + +W + L AL ++K +N+ LL LHA A+ D
Sbjct: 62 EKLIEYQNQRGGRVFLQSVEKPERDDWANGLEALQTALKLQKSVNQALLDLHAVAADKSD 121
Query: 185 ANLTDFLEGRYLQEQVDAIKTLADLLTTVRR-------TQLYLVDRDLM 226
++TDFLE YL E V+ IK L D +T++++ YL ++ +
Sbjct: 122 PHMTDFLESPYLSESVETIKKLGDHITSLKKLWSSHPGMAEYLFNKHTL 170
>d1z6om1 a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage
looper(Trichoplusia ni), H chain [TaxId: 7111]}
Length = 191
Score = 145 bits (366), Expect = 3e-44
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 14/179 (7%)
Query: 64 RQTLQNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEH 123
+ H C + + QI E+ ++ Y++M + ++D V GFA+ F + EE EH
Sbjct: 11 PKDWITMHRSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAASEEREH 70
Query: 124 MEHLIAYLNKRGGQLRLTS----IEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACA 179
LI YL RG S + P++ W + L AL ME + + + +
Sbjct: 71 AMKLIEYLLMRGELTNDVSSLLQVRPPTRSSWKGGVEALEHALSMESDVTKSIRNVIKAC 130
Query: 180 SQ---HGDANLTDFLEGRYLQEQVDAIKTLADLLTTVRR-------TQLYLVDRDLMSG 228
D +L D+L G +L+EQ + LA +T+++ ++ D+ L+
Sbjct: 131 EDDSEFNDYHLVDYLTGDFLEEQYKGQRDLAGKASTLKKLMDRHEALGEFIFDKKLLGI 189
>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 142 bits (360), Expect = 2e-43
Identities = 58/151 (38%), Positives = 87/151 (57%)
Query: 65 QTLQNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHM 124
Q QN+ + +N +N +R++YTY+S+ F +D+VAL G FF +E+ E
Sbjct: 2 QIRQNYSTEVEAAVNRLVNLHLRASYTYLSLGFFFDRDDVALEGVGHFFRELAEEKREGA 61
Query: 125 EHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGD 184
E L+ + N RGG+ ++ PS+ EW ++ + AL MEK LN+ LL LHA S D
Sbjct: 62 ERLLEFQNDRGGRALFQDVQKPSQDEWGKTQEAMEAALAMEKNLNQALLDLHALGSARAD 121
Query: 185 ANLTDFLEGRYLQEQVDAIKTLADLLTTVRR 215
+L DFLE YL ++V IK + + LT +RR
Sbjct: 122 PHLCDFLESHYLDKEVKLIKKMGNHLTNLRR 152
>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens),
mitocondial isoform [TaxId: 9606]}
Length = 171
Score = 139 bits (352), Expect = 2e-42
Identities = 69/166 (41%), Positives = 100/166 (60%), Gaps = 7/166 (4%)
Query: 68 QNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHL 127
QNFH D IN QIN E+ ++Y Y+SMA + ++D+VAL F+++F H +EE EH E L
Sbjct: 5 QNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSREETEHAEKL 64
Query: 128 IAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANL 187
+ N+RGG++RL I+ P + +W + + AL +EK +N+ LL+LHA AS GD +L
Sbjct: 65 MRLQNQRGGRIRLQDIKKPEQDDWESGLHAMECALLLEKNVNQSLLELHALASDKGDPHL 124
Query: 188 TDFLEGRYLQEQVDAIKTLADLLTTVRR-------TQLYLVDRDLM 226
DFLE YL EQV +IK L D + + + YL D +
Sbjct: 125 CDFLETYYLNEQVKSIKELGDHVHNLVKMGAPDAGLAEYLFDTHTL 170
>d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage
looper(Trichoplusia ni), L chain [TaxId: 7111]}
Length = 200
Score = 140 bits (355), Expect = 2e-42
Identities = 33/178 (18%), Positives = 70/178 (39%), Gaps = 20/178 (11%)
Query: 68 QNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHL 127
H + ++ + +Y Y+ A++ GF+K F E +
Sbjct: 19 YGSHGNVATELQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKLFKKLSDEAWSKTIDI 78
Query: 128 IAYLNKRGGQLRLTSIEAP-----SKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQH 182
I ++ KRG ++ + N + L +AL +K+L E+ +H A+++
Sbjct: 79 IKHVTKRGDKMNFDQHSTMKTERKNYTAENHELEALAKALDTQKELAERAFYIHREATRN 138
Query: 183 G----DANLTDFLEGRYLQEQVDAIKTLADLLTTVRR-----------TQLYLVDRDL 225
D + +LE ++++ + I+TLA + +++ LY+ D L
Sbjct: 139 SQHLHDPEIAQYLEEEFIEDHAEKIRTLAGHTSDLKKFITANNGHDLSLALYVFDEYL 196
>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 162
Score = 127 bits (320), Expect = 1e-37
Identities = 46/159 (28%), Positives = 86/159 (54%), Gaps = 9/159 (5%)
Query: 72 EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYL 131
E ++ +N QIN EI SAY Y+SMAS+ D++ L GF+ + ++EE+ H + ++
Sbjct: 4 EKMVEALNRQINAEIYSAYLYLSMASYF--DSIGLKGFSNWMRVQWQEELMHAMKMFDFV 61
Query: 132 NKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFL 191
++RGG+++L ++E P EW++ E + +++ +L A Q D +FL
Sbjct: 62 SERGGRVKLYAVEEP-PSEWDSPLAAFEHVYEHEVNVTKRIHELVEMAMQEKDFATYNFL 120
Query: 192 EGRYLQEQVDAIKTLADLLTTVRRTQ-----LYLVDRDL 225
+ Y+ EQV+ + D++ +R L +D++L
Sbjct: 121 QW-YVAEQVEEEASALDIVEKLRLIGEDKRALLFLDKEL 158
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA
[TaxId: 562]}
Length = 161
Score = 126 bits (318), Expect = 2e-37
Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 9/160 (5%)
Query: 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAY 130
+ I+K+N Q+N E+ S+ Y M+++C G A F +EE+ HM+ L Y
Sbjct: 2 KPEMIEKLNEQMNLELYSSLLYQQMSAWC--SYHTFEGAAAFLRRHAQEEMTHMQRLFDY 59
Query: 131 LNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDF 190
L G R+ ++E+P E++++++L E E+ + +K+ +L A + D +F
Sbjct: 60 LTDTGNLPRINTVESP-FAEYSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNF 118
Query: 191 LEGRYLQEQVDAIKTLADLLTTVRR-----TQLYLVDRDL 225
L+ Y+ EQ + K ++ + LY +D++L
Sbjct: 119 LQW-YVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKEL 157
>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId:
2336]}
Length = 164
Score = 122 bits (306), Expect = 1e-35
Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 9/161 (5%)
Query: 70 FHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIA 129
E +N Q+N EI S+Y Y+SMA++ D GFA + +EE+ H
Sbjct: 4 ISEKVRKALNDQLNREIYSSYLYLSMATYF--DAEGFKGFAHWMKKQAQEELTHAMKFYE 61
Query: 130 YLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTD 189
Y+ +RGG++ L +IE P WN ++D AL E+ + + + + AS+ D
Sbjct: 62 YIYERGGRVELEAIEKP-PSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVS 120
Query: 190 FLEGRYLQEQVDAIKTLADLLTTVRR-----TQLYLVDRDL 225
FL+ ++ EQV+ + ++L + + + ++ +DR L
Sbjct: 121 FLKW-FVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYL 160
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni
[TaxId: 197]}
Length = 165
Score = 118 bits (296), Expect = 5e-34
Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 9/160 (5%)
Query: 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAY 130
++ + +N QIN E+ +A Y+SM+S+C +L G F EE +H + LI Y
Sbjct: 3 SKEVVKLLNEQINKEMYAANLYLSMSSWC--YENSLDGAGAFLFAHASEESDHAKKLITY 60
Query: 131 LNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDF 190
LN+ + L ++ P +Q + ++ D+ + E+ + + + L H D + +F
Sbjct: 61 LNETDSHVELQEVKQP-EQNFKSLLDVFEKTYEHEQFITKSINTLVEHMLTHKDYSTFNF 119
Query: 191 LEGRYLQEQVDAIKTLADLLTTVRR-----TQLYLVDRDL 225
L+ Y+ EQ + ++ ++ LYL D+ +
Sbjct: 120 LQW-YVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYI 158
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1)
{Escherichia coli [TaxId: 562]}
Length = 158
Score = 86.7 bits (214), Expect = 5e-22
Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 7/152 (4%)
Query: 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAY 130
I+ +N + +E+ + Y A N L H +E++H + I
Sbjct: 4 DTKVINYLNKLLGNELVAINQYFLHARMF--KNWGLKRLNDVEYHESIDEMKHADRYIER 61
Query: 131 LNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDF 190
+ G L + VE++L L +E + L + A D D
Sbjct: 62 ILFLEGLPNLQDLGKL--NIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDM 119
Query: 191 LEGRYLQEQVDAIKTLADLLTTVRRT--QLYL 220
+ L+++ I L L +++ Q YL
Sbjct: 120 MI-EILRDEEGHIDWLETELDLIQKMGLQNYL 150
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter
capsulatus [TaxId: 1061]}
Length = 160
Score = 84.4 bits (208), Expect = 4e-21
Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 7/152 (4%)
Query: 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAY 130
I+ +N + E+ + Y ++ L AK EE+ H + +IA
Sbjct: 4 DAKVIEFLNAALRSELTAISQYWVHFRLQ--EDWGLAKMAKKSREESIEEMGHADKIIAR 61
Query: 131 LNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDF 190
+ G L ++ + + L L E + + ++ GD +
Sbjct: 62 ILFLEGHPNLQKLDPL--RIGEGPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNI 119
Query: 191 LEGRYLQEQVDAIKTLADLLTTVRRT--QLYL 220
E + ++ + L ++ R Q +
Sbjct: 120 FE-SLITDEEGHVDFLETQISLYDRLGPQGFA 150
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1)
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 169
Score = 82.8 bits (204), Expect = 2e-20
Identities = 21/154 (13%), Positives = 50/154 (32%), Gaps = 6/154 (3%)
Query: 68 QNFHEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHL 127
++ I+ +N E+ + + Y++ D++ A +E+ H E+
Sbjct: 3 EDRKAKVIEVLNKARAMELHAIHQYMNQHYSL--DDMDYGELAANMKLIAIDEMRHAENF 60
Query: 128 IAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANL 187
+ + GG+ V + E E + + GD
Sbjct: 61 AERIKELGGEPTTQKEGKV--VTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVT 118
Query: 188 TDFLEGRYLQEQVDAIKTLADLLTTVRRT-QLYL 220
E R ++E+ + ++ + ++ YL
Sbjct: 119 ARLFE-RIIEEEQAHLTYYENIGSHIKNLGDTYL 151
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1)
{Azotobacter vinelandii [TaxId: 354]}
Length = 154
Score = 73.6 bits (180), Expect = 3e-17
Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 7/152 (4%)
Query: 71 HEDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAY 130
+ I +N + +E+ + Y A ++ L K H +E++H + LI
Sbjct: 4 DKIVIQHLNKILGNELIAINQYFLHARMY--EDWGLEKLGKHEYHESIDEMKHADKLIKR 61
Query: 131 LNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDF 190
+ G L + +++L L +E+ L A GD +
Sbjct: 62 ILFLEGLPNLQELGKL--LIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASREL 119
Query: 191 LEGRYLQEQVDAIKTLADLLTTVRRT--QLYL 220
LE L+ + D I L L + + + YL
Sbjct: 120 LE-DILESEEDHIDWLETQLDLIDKIGLENYL 150
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 135
Score = 54.4 bits (130), Expect = 3e-10
Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 4/131 (3%)
Query: 72 EDCIDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYL 131
++ + I E + Y + A + A+ F + E+ H+ A +
Sbjct: 5 GSTLENLKAAIAGETGAHAKYTAFAKAAREQG--YEQIARLFEATAAAELIHIGLEYALV 62
Query: 132 NKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFL 191
+ ++ APS ++ +L++ A + ++ A + G++
Sbjct: 63 AEMEPGYEKPTVAAPSA--YSCDLNLISGANGEIYETSDMYPAFIRKAQEEGNSKAVHVF 120
Query: 192 EGRYLQEQVDA 202
L E V A
Sbjct: 121 TRAKLAESVHA 131
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 146
Score = 45.0 bits (106), Expect = 1e-06
Identities = 19/136 (13%), Positives = 33/136 (24%), Gaps = 6/136 (4%)
Query: 75 IDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKR 134
I T E ++ Y +D GF + + + EH
Sbjct: 9 EKNILTAFAGESQARNRYNYFGGQAKKD-----GFVQISDIFAETADQEREHAKRLFKFL 63
Query: 135 GGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
G P+ +T +L+ A + E A + G +
Sbjct: 64 EGGDLEIVAAFPAGIIADTHANLIASAAGEHHEYTEMYPSFARIAREEGYEEIARVFA-S 122
Query: 195 YLQEQVDAIKTLADLL 210
+ K D
Sbjct: 123 IAVAEEFHEKRFLDFA 138
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon
Sulfolobus tokodaii [TaxId: 111955]}
Length = 141
Score = 44.7 bits (105), Expect = 1e-06
Identities = 13/136 (9%), Positives = 35/136 (25%), Gaps = 8/136 (5%)
Query: 75 IDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKR 134
+ + E + Y+ A ++ G+ + H
Sbjct: 8 AENLKQGFIGESMANRRYLYFAKRADEE-----GYPEIAGLLRSIAEGETAHAFG-HLDF 61
Query: 135 GGQLRLTSIEAPSKQEWNTVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
Q LT K + + + + + A + G + ++ E
Sbjct: 62 IRQGGLTDPATD-KPIGTLEQMIESAIAGETYEWTQMYPGFAKVAREEGFPEVAEWFE-T 119
Query: 195 YLQEQVDAIKTLADLL 210
+ + + ++L
Sbjct: 120 LARAEKSHAEKFQNVL 135
>d2bk6a1 a.25.1.1 (A:7-156) Dodecameric ferritin homolog {Listeria
innocua [TaxId: 1642]}
Length = 150
Score = 35.0 bits (80), Expect = 0.002
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 107 FGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQ--------LRLTSIEAPSKQEWNTVEDLL 158
F + Y E E M+ + L GG L S+E + T++ L+
Sbjct: 34 FTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLM 93
Query: 159 TEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
+ + + L ++ + + GD D L
Sbjct: 94 EDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAF 129
>d1o9ra_ a.25.1.1 (A:) Dodecameric ferritin homolog {Agrobacterium
tumefaciens, Dps [TaxId: 358]}
Length = 162
Score = 33.1 bits (75), Expect = 0.013
Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 9/96 (9%)
Query: 107 FGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQ--------LRLTSIEAPSKQEWNTVEDLL 158
+ + H + + + + GG T ++A + + D L
Sbjct: 49 IAVHELLDTFRTQLDNHGDTIAERVVQLGGTALGSLQAVSSTTKLKAYPT-DIYKIHDHL 107
Query: 159 TEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
+ ++ + K + + GD D
Sbjct: 108 DALIERYGEVANMIRKAIDDSDEAGDPTTADIFTAA 143
>d1zs3a1 a.25.1.1 (A:3-173) Dodecameric ferritin homolog
{Lactococcus lactis, DpsB [TaxId: 1358]}
Length = 171
Score = 32.5 bits (74), Expect = 0.023
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 9/93 (9%)
Query: 112 FFTHSYKEEIEHMEHLIAYLNKRGGQ--------LRLTSI-EAPSKQEWNTVEDLLTEAL 162
+ + E+E+ + L L+ K ++ T EDLL +
Sbjct: 58 YLREIAQREVEYFFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEDLLESFI 117
Query: 163 HMEKQLNEKLLKLHACASQHGDANLTDFLEGRY 195
+ N + + A++ L + Y
Sbjct: 118 VDFQAQNMFITRAIKLANKEEKFALAAGVVELY 150
>d1ji5a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus
anthracis, Dlp-1 [TaxId: 1392]}
Length = 142
Score = 30.8 bits (69), Expect = 0.078
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 107 FGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQ--------LRLTSIEAPSKQEWNTVEDLL 158
F + F Y E H++ + + GG+ L ++SI+ + E T E ++
Sbjct: 33 FTLHEKFEELYTESATHIDEIAERILAIGGKPVATMKEYLEISSIQEAAYGE--TAEGMV 90
Query: 159 TEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQ 199
+ + + +L K A D +D L G Y + +
Sbjct: 91 EAIMKDYEMMLVELKKGMEIAQNSDDEMTSDLLLGIYTELE 131
>d1umna_ a.25.1.1 (A:) Dodecameric ferritin homolog {Streptococcus
suis [TaxId: 1307]}
Length = 151
Score = 30.4 bits (68), Expect = 0.088
Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 8/96 (8%)
Query: 107 FGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQ--------LRLTSIEAPSKQEWNTVEDLL 158
+ +E +++ + L GG + ++ T+E+ L
Sbjct: 35 MIWHPKMDEYMEEIDGYLDEMSERLITLGGAPFSTLKEFSENSQLKEVLGDYNVTIEEQL 94
Query: 159 TEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
+ + + L K + + GD+ D
Sbjct: 95 ARVVEVFRYLAALFQKGFDVSDEEGDSVTNDIFNVA 130
>d1ji4a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Helicobacter
pylori, Nap [TaxId: 210]}
Length = 144
Score = 30.4 bits (68), Expect = 0.10
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 107 FGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQ--------LRLTSIEAPSKQEWNTVEDLL 158
F K Y+E + + L + + G ++LT ++ +K +D+
Sbjct: 34 FNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETK-TSFHSKDIF 92
Query: 159 TEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
E L K L ++ +L A + GD + + +
Sbjct: 93 KEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQ 128
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 158
Score = 30.3 bits (67), Expect = 0.11
Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 16/144 (11%)
Query: 78 INTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQ 137
+ I EI + Y S+A + + + +EE +H L ++
Sbjct: 16 LGMAIKAEIGAREFYKSLAEKIKIEALK-----EKINWLAEEEKKHEALLRKLYSQMFPG 70
Query: 138 LRLTSIEAPSKQEWN----------TVEDLLTEALHMEKQLNEKLLKLHACASQHGDANL 187
+ + E + DL+ A+ E+ E LKL + L
Sbjct: 71 KEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVKEEEKKRL 130
Query: 188 TDFLEGRYLQEQVDAIKTLADLLT 211
+L + ++ +LL
Sbjct: 131 MRYL-ADMERGHYYTLRAEYELLL 153
>d1tjoa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Archaeon
Halobacterium salinarum [TaxId: 2242]}
Length = 180
Score = 30.5 bits (68), Expect = 0.11
Identities = 20/166 (12%), Positives = 47/166 (28%), Gaps = 16/166 (9%)
Query: 42 SKKSSEPTQSSQHSPDSLGKTERQTLQNFHEDCIDKINTQINDEIRSAYTYISMASFCTQ 101
++K++ T D+L + E C+D +N + + +
Sbjct: 2 TQKNARATAGEVEGSDALRMDADRA-----EQCVDALNADLANVYVLYHQLKKHHWNVEG 56
Query: 102 DNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQ--------LRLTSIEAPSKQEWNT 153
F + + E + L + GG S++ + +
Sbjct: 57 AE--FRDLHLFLGEAAETAEEVADELAERVQALGGVPHASPETLQAEASVDVEDE-DVYD 113
Query: 154 VEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQ 199
+ L + + + E + A GD L ++ +
Sbjct: 114 IRTSLANDMAIYGDIIEATREHTELAENLGDHATAHMLREGLIELE 159
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284
homologue {Magnetospirillum magnetotacticum ms-1 [TaxId:
272627]}
Length = 152
Score = 29.1 bits (64), Expect = 0.27
Identities = 18/135 (13%), Positives = 33/135 (24%), Gaps = 15/135 (11%)
Query: 75 IDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKR 134
+ + I E +A Y+ +A N A F + H + +
Sbjct: 4 AEFLAHAIALETEAAERYVELADMMEAHN--NLDTATVFRDMARFSTLHGDEIKQRSRAL 61
Query: 135 GG----QLRLTSIEAPSKQEW------NTVEDLLTEALHMEKQLNEKLLKLHACASQHGD 184
+ P + T L A E + E + A+ D
Sbjct: 62 ELPKLMSWQYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEA---AANSAD 118
Query: 185 ANLTDFLEGRYLQEQ 199
+ +E
Sbjct: 119 PEVKRLGADFAAEEA 133
Score = 27.6 bits (60), Expect = 1.0
Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 153 TVEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLADLLT 211
T+ + L A+ +E + E+ ++L H + + + +
Sbjct: 2 TLAEFLAHAIALETEAAERYVELADMMEAHNNLDTATVFRDMARFSTLHG-DEIKQRSR 59
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga
maritima [TaxId: 2336]}
Length = 149
Score = 28.3 bits (62), Expect = 0.54
Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 18/104 (17%)
Query: 75 IDKINTQINDEIRSAYTYISMASFCTQDNVALFGFAKFFTHSYKEEIEHMEHLIAYLNKR 134
D + I E Y ++ + K F +E H E ++
Sbjct: 8 SDILTVAIRLEEEGERFYRELSEHFNGE------IKKTFLELADQERIHAEIFRKMSDQE 61
Query: 135 GGQLRLTSIEAPS------------KQEWNTVEDLLTEALHMEK 166
+ + + +++ T++++L A+ +EK
Sbjct: 62 NWDEVDSYLAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEK 105
>d1jiga_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus
anthracis, Dlp-2 [TaxId: 1392]}
Length = 146
Score = 28.2 bits (62), Expect = 0.61
Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
Query: 107 FGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQ--------LRLTSIEAPSKQEWNTVEDLL 158
F + F Y E +++ L + G+ L +S+ + +E E+++
Sbjct: 37 FTLHEKFEEFYNEAGTYIDELAERILALEGKPLATMKEYLATSSVNEGTSKES--AEEMV 94
Query: 159 TEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQ 199
++ L ++L + A + GDA D L + +
Sbjct: 95 QTLVNDYSALIQELKEGMEVAGEAGDATSADMLLAIHTTLE 135
>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase
PP2188 {Pseudomonas putida [TaxId: 303]}
Length = 199
Score = 27.5 bits (61), Expect = 1.2
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 26/136 (19%)
Query: 118 KEEIEHMEHLIAYLNKRGGQLRLTSIEAP----------SKQEWNTVEDLLTEALHMEKQ 167
+EE+ H E ++ + +RG + L + A E + D L +E +
Sbjct: 65 REELVHHEQVLRLMKRRG--VPLRPVSAGRYASGLRRLVRAHEPVKLVDTLVVGAFIEAR 122
Query: 168 LNEKLLKLHACASQHGDANLTDF------LEGRYLQEQVDAIKTLADLLTTVRRTQLYL- 220
E+ A H D L F E R+ Q + D R +L
Sbjct: 123 SCERF----AALVPHLDEELGRFYHGLLKSEARHYQGYLKLAHNYGDEADIARCVELVRA 178
Query: 221 VDRDLMSG---KFSMH 233
+ +L+ + H
Sbjct: 179 AEMELIQSPDQELRFH 194
>d1dpsa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Escherichia
coli, Dps [TaxId: 562]}
Length = 159
Score = 27.3 bits (60), Expect = 1.3
Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 4/92 (4%)
Query: 107 FGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQLRLTSIEAPSKQEWNTVEDLLTEALHMEK 166
+ I+H++ + + GG T+ SK + + K
Sbjct: 52 IAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLK 111
Query: 167 QLNEKLLKL----HACASQHGDANLTDFLEGR 194
+L ++ + + D + D L
Sbjct: 112 ELADRYAIVANDVRKAIGEAKDDDTADILTAA 143
>d1zuja1 a.25.1.1 (A:6-173) Dodecameric ferritin homolog
{Lactococcus lactis, DpsA [TaxId: 1358]}
Length = 168
Score = 27.2 bits (60), Expect = 1.5
Identities = 12/101 (11%), Positives = 27/101 (26%), Gaps = 9/101 (8%)
Query: 103 NVALFGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQ--------LRLTSI-EAPSKQEWNT 153
+ F +E E + L + E K ++ T
Sbjct: 46 YAKSANYRIKFREIALKEDEWFYLISEQLLDENELVPTTLDEFVSNHKFIENDPKAKYWT 105
Query: 154 VEDLLTEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
E L+ ++ + N + + A + +L +
Sbjct: 106 DEALIENFINDFQNQNLFIGRAIKLAQKEEKFSLELAIRKL 146
>d1n1qa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus
brevis, Dps [TaxId: 1393]}
Length = 149
Score = 27.0 bits (59), Expect = 1.7
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 10/96 (10%)
Query: 107 FGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQ--------LRLTSIEAPSKQEWNTVEDLL 158
F + F Y E H++ L + GG L SI+ + +++
Sbjct: 40 FTLHEKFEELYTEASGHIDTLAERVLSIGGSPIATLAASLEEASIKEA--TGGESAAEMV 97
Query: 159 TEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
+ ++ L +L A + D D L+
Sbjct: 98 SSVVNDFVDLVGELKVARDVADEADDEATADMLDAI 133
>d2gs4a1 a.25.1.4 (A:3-161) Hypothetical protein YciF {Escherichia
coli [TaxId: 562]}
Length = 159
Score = 26.3 bits (58), Expect = 2.7
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 152 NTVEDLLTEAL----HMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLA 207
T+ED+ L EKQL L KL S + L+ +L+E I+ +
Sbjct: 2 KTIEDVFIHLLSDTYSAEKQLTRALAKLARATS---NEKLSQAFH-AHLEETHGQIERID 57
Query: 208 DLL 210
++
Sbjct: 58 QVV 60
>d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 160
Score = 25.9 bits (57), Expect = 3.2
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 152 NTVEDLLTEAL----HMEKQLNEKLLKLHACASQHGDANLTDFLEGRYLQEQVDAIKTLA 207
T+EDLL L + E+Q+ + L K+ A+ + +L+ L +L+E I+ L
Sbjct: 9 QTMEDLLLHGLRDIYYAEQQITKALPKMIEQAT---NRDLSQGLT-SHLEETQKQIERLD 64
Query: 208 DLL 210
+
Sbjct: 65 QVF 67
>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId:
1542]}
Length = 540
Score = 26.0 bits (57), Expect = 4.5
Identities = 4/45 (8%), Positives = 10/45 (22%)
Query: 46 SEPTQSSQHSPDSLGKTERQTLQNFHEDCIDKINTQINDEIRSAY 90
+ T K + + + D+I +
Sbjct: 163 LDGTYGHNKFYSDRMKLIYRYKRELKMLYENMKQNNSVDDIIINF 207
>d2fjca1 a.25.1.1 (A:27-177) Dodecameric ferritin homolog {Treponema
pallidum, TpF1 [TaxId: 160]}
Length = 151
Score = 25.1 bits (54), Expect = 5.9
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 107 FGFAKFFTHSYKEEIEHMEHLIAYLNKRGGQ--------LRLTSIEAPSKQEWNTVEDLL 158
+ Y E + + L + G Q L L+ I + ++ T+ L
Sbjct: 40 KQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEET-EKEITIVSAL 98
Query: 159 TEALHMEKQLNEKLLKLHACASQHGDANLTDFLEGR 194
+ L+ + + A++ GDA +
Sbjct: 99 ARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDI 134
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio
harveyi [TaxId: 669]}
Length = 302
Score = 25.3 bits (54), Expect = 7.2
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 112 FFTHSYKEEIEHMEHLIAYLNKRG 135
+ ++H L YL+ G
Sbjct: 36 LIASGFARRMDHFAGLAEYLSTNG 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.128 0.368
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 815,020
Number of extensions: 34560
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 47
Length of query: 239
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 156
Effective length of database: 1,268,006
Effective search space: 197808936
Effective search space used: 197808936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.7 bits)