Query psy10515
Match_columns 280
No_of_seqs 129 out of 469
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 20:12:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2izx_A CAMP-dependent protein 23.9 33 0.0011 20.8 1.5 14 13-26 11-24 (41)
2 4dm9_A Ubiquitin carboxyl-term 17.4 38 0.0013 29.0 0.9 30 31-60 92-124 (228)
3 2kyg_A CAMP-dependent protein 17.3 55 0.0019 21.0 1.5 14 13-26 19-32 (50)
4 1xd3_A Ubiquitin carboxyl-term 16.5 35 0.0012 29.3 0.4 30 31-60 92-124 (230)
5 2izy_A CAMP-dependent protein 13.4 79 0.0027 20.6 1.5 14 13-26 14-27 (54)
6 2vog_B BCL-2-modifying factor; 12.6 67 0.0023 17.9 0.7 8 18-25 5-12 (27)
7 4a18_Q RPL36, 60S ribosomal pr 12.4 78 0.0027 23.8 1.3 9 13-21 41-49 (104)
8 2jry_A R11.6, I-superfamily co 12.3 64 0.0022 20.6 0.7 11 32-42 36-46 (46)
9 3izc_k 60S ribosomal protein R 12.2 81 0.0028 23.5 1.3 9 13-21 40-48 (100)
10 3rii_A Ubiquitin carboxyl-term 12.2 43 0.0015 28.8 -0.2 30 31-60 90-121 (233)
No 1
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=23.92 E-value=33 Score=20.84 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=11.2
Q ss_pred hHHHHHHHhhhhhc
Q psy10515 13 LRDFVREVCIAQSA 26 (280)
Q Consensus 13 ~~~~~~~~~~~~~~ 26 (280)
|.||.+|||..|-.
T Consensus 11 L~~~~~~vl~~qP~ 24 (41)
T 2izx_A 11 LQGYTVEVLRQQPP 24 (41)
T ss_dssp HHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHCCC
Confidence 67899999988753
No 2
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=17.41 E-value=38 Score=29.03 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=20.1
Q ss_pred cCCCccccccccc---CCCCccccCchhHhhhh
Q psy10515 31 KNGCGTQGIKKRL---PEHNKIIAQPDIKSSLY 60 (280)
Q Consensus 31 ~~~~~~~~~~~~~---~~~~~~~~~p~~~~~v~ 60 (280)
.|.|||+++---| |++-.+.-.+.+++|..
T Consensus 92 ~NACgt~ALLh~l~N~~~~i~i~~gs~L~~f~~ 124 (228)
T 4dm9_A 92 GNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLS 124 (228)
T ss_dssp TTCHHHHHHHHHHHTTTTTCCBCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHhcCccccccCCCcHHHHHHH
Confidence 5899999976544 33334446677777766
No 3
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=17.33 E-value=55 Score=20.96 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=11.5
Q ss_pred hHHHHHHHhhhhhc
Q psy10515 13 LRDFVREVCIAQSA 26 (280)
Q Consensus 13 ~~~~~~~~~~~~~~ 26 (280)
|.||++|||..|-.
T Consensus 19 L~~~~~evlr~qP~ 32 (50)
T 2kyg_A 19 LQGYTVEVLRQQPP 32 (50)
T ss_dssp HHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHCCC
Confidence 68999999988753
No 4
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=16.53 E-value=35 Score=29.35 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=18.8
Q ss_pred cCCCccccccccc---CCCCccccCchhHhhhh
Q psy10515 31 KNGCGTQGIKKRL---PEHNKIIAQPDIKSSLY 60 (280)
Q Consensus 31 ~~~~~~~~~~~~~---~~~~~~~~~p~~~~~v~ 60 (280)
.|.|||+++---| |++-.|.-.+.+++|..
T Consensus 92 ~NACgT~AlLh~l~N~~~~i~l~~gs~L~~f~~ 124 (230)
T 1xd3_A 92 SNACGTIGLIHAIANNKDKMHFESGSTLKKFLE 124 (230)
T ss_dssp BTCHHHHHHHHHHHTTGGGCCBCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHcCcCCcccCCCchHHHHHH
Confidence 6999999987654 32222333566777766
No 5
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=13.41 E-value=79 Score=20.65 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=11.1
Q ss_pred hHHHHHHHhhhhhc
Q psy10515 13 LRDFVREVCIAQSA 26 (280)
Q Consensus 13 ~~~~~~~~~~~~~~ 26 (280)
|.||++|||..|-.
T Consensus 14 L~~f~~evlr~qP~ 27 (54)
T 2izy_A 14 LQGYTVEVLRQQPP 27 (54)
T ss_dssp HHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHCCC
Confidence 67899999987743
No 6
>2vog_B BCL-2-modifying factor; protein-protein complex, BH3, apoptosis, Pro-surviVal; 1.9A {Mus musculus}
Probab=12.61 E-value=67 Score=17.91 Aligned_cols=8 Identities=50% Similarity=0.501 Sum_probs=5.0
Q ss_pred HHHhhhhh
Q psy10515 18 REVCIAQS 25 (280)
Q Consensus 18 ~~~~~~~~ 25 (280)
.|+||||-
T Consensus 5 ~E~~Ia~K 12 (27)
T 2vog_B 5 AEVQIARK 12 (27)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 36777763
No 7
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=12.43 E-value=78 Score=23.79 Aligned_cols=9 Identities=44% Similarity=0.807 Sum_probs=7.4
Q ss_pred hHHHHHHHh
Q psy10515 13 LRDFVREVC 21 (280)
Q Consensus 13 ~~~~~~~~~ 21 (280)
.||.+||||
T Consensus 41 VrdiIrEV~ 49 (104)
T 4a18_Q 41 VRQVIREVT 49 (104)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 478889987
No 8
>2jry_A R11.6, I-superfamily conotoxin R11A; IOTA-conotoxin; HET: HYP DPN; NMR {Conus radiatus} PDB: 2p4l_A* 2jtu_A*
Probab=12.33 E-value=64 Score=20.58 Aligned_cols=11 Identities=36% Similarity=0.582 Sum_probs=9.3
Q ss_pred CCCcccccccc
Q psy10515 32 NGCGTQGIKKR 42 (280)
Q Consensus 32 ~~~~~~~~~~~ 42 (280)
.||.|+.|+.|
T Consensus 36 pgcst~~f~~~ 46 (46)
T 2jry_A 36 PGCSTSSFFKI 46 (46)
T ss_dssp CSCCCCTTSCC
T ss_pred cCCcccceEcC
Confidence 49999999875
No 9
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=12.16 E-value=81 Score=23.55 Aligned_cols=9 Identities=44% Similarity=0.899 Sum_probs=7.3
Q ss_pred hHHHHHHHh
Q psy10515 13 LRDFVREVC 21 (280)
Q Consensus 13 ~~~~~~~~~ 21 (280)
.||.|||||
T Consensus 40 VrdiIrEV~ 48 (100)
T 3izc_k 40 VRSLVREIA 48 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 478888887
No 10
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=12.15 E-value=43 Score=28.84 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=18.5
Q ss_pred cCCCcccccccccCC--CCccccCchhHhhhh
Q psy10515 31 KNGCGTQGIKKRLPE--HNKIIAQPDIKSSLY 60 (280)
Q Consensus 31 ~~~~~~~~~~~~~~~--~~~~~~~p~~~~~v~ 60 (280)
.|.|||+++---|=. |+.|.-.+.+++|..
T Consensus 90 ~NACgT~ALLh~l~N~~~~~i~~gs~L~~f~~ 121 (233)
T 3rii_A 90 NNASATQAIVSVLLNCTHQDVHLGETLSEFKE 121 (233)
T ss_dssp GGGHHHHHHHHHHHTCCCTTCBCCHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCcccccCCcHHHHHHH
Confidence 588999987643321 334555666666655
Done!