Query psy10515
Match_columns 280
No_of_seqs 129 out of 469
Neff 7.0
Searched_HMMs 13730
Date Fri Aug 16 20:12:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10515.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10515hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jjcb1 a.6.1.1 (B:1-38,B:152- 31.5 13 0.00093 24.7 2.4 16 8-23 52-67 (77)
2 d1be3k_ f.23.15.1 (K:) Subunit 25.5 17 0.0012 18.5 1.6 11 254-264 11-21 (26)
3 d1xd3a_ d.3.1.6 (A:) Ubiquitin 13.2 23 0.0017 28.4 0.4 30 31-60 91-123 (229)
4 d1dxsa_ a.60.1.2 (A:) C-termin 11.6 68 0.005 19.4 2.4 55 12-82 1-55 (57)
5 d2etla1 d.3.1.6 (A:1-223) Ubiq 9.7 41 0.003 26.6 0.9 30 31-60 87-119 (223)
6 d1v7la_ c.8.2.1 (A:) Isopropyl 8.5 53 0.0039 24.4 1.1 22 15-37 44-66 (162)
7 d1rm6c2 d.15.4.2 (C:1-81) 4-hy 7.6 76 0.0056 20.8 1.5 27 6-36 17-43 (81)
8 d1jt6a2 a.121.1.1 (A:73-187) M 7.2 2.6E+02 0.019 18.9 4.5 28 245-273 64-91 (115)
9 d1ffva2 d.15.4.2 (A:3-81) Carb 6.6 96 0.007 20.2 1.5 25 8-36 18-42 (79)
10 d1ug7a_ a.24.24.1 (A:) Domain 6.3 42 0.0031 24.1 -0.5 15 2-16 68-82 (128)
No 1
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=31.50 E-value=13 Score=24.67 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=14.4
Q ss_pred hhhcchHHHHHHHhhh
Q psy10515 8 ADCLSLRDFVREVCIA 23 (280)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (280)
+||||.+...||+...
T Consensus 52 ~Dcls~~Giarel~~~ 67 (77)
T d1jjcb1 52 PDALGLLGLARDLHAL 67 (77)
T ss_dssp SGGGSHHHHHHHHHHH
T ss_pred HHHhccccHHHHHHHh
Confidence 7999999999999764
No 2
>d1be3k_ f.23.15.1 (K:) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.52 E-value=17 Score=18.54 Aligned_cols=11 Identities=55% Similarity=0.918 Sum_probs=8.5
Q ss_pred hhHhHHHHHHH
Q psy10515 254 GAVGFFGVLSS 264 (280)
Q Consensus 254 g~VG~~G~iSS 264 (280)
|.||..|++|+
T Consensus 11 gavgavglvsa 21 (26)
T d1be3k_ 11 GAVGAVGLVSA 21 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhcceeEEee
Confidence 56788888875
No 3
>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.15 E-value=23 Score=28.36 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=21.9
Q ss_pred cCCCcccccccc---cCCCCccccCchhHhhhh
Q psy10515 31 KNGCGTQGIKKR---LPEHNKIIAQPDIKSSLY 60 (280)
Q Consensus 31 ~~~~~~~~~~~~---~~~~~~~~~~p~~~~~v~ 60 (280)
.|.|||+++.-- .|++..|.-.+.+++|..
T Consensus 91 ~NACgT~Allh~l~N~~~~~~i~~gs~L~~f~~ 123 (229)
T d1xd3a_ 91 SNACGTIGLIHAIANNKDKMHFESGSTLKKFLE 123 (229)
T ss_dssp BTCHHHHHHHHHHHTTGGGCCBCTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHhcCccccccCCcHHHHHHHH
Confidence 589999988643 355666667777888777
No 4
>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.60 E-value=68 Score=19.37 Aligned_cols=55 Identities=13% Similarity=0.008 Sum_probs=36.7
Q ss_pred chHHHHHHHhhhhhceeeccCCCcccccccccCCCCccccCchhHhhhhhhchhhhccCCcchHHHHHHHH
Q psy10515 12 SLRDFVREVCIAQSAIVLNKNGCGTQGIKKRLPEHNKIIAQPDIKSSLYNFHAENQLNTLFGSCSLILLVQ 82 (280)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~~~~~lst~~GRDKllR~lQ 82 (280)
|+.+|.......|-.=....||+-|-..-..+- .+.+.. +.=+..=|.|++|.+|
T Consensus 1 Sv~~wL~~lgL~~Y~~~F~~~G~~~l~~l~~lt-------~eDL~~---------lGI~~~hr~kilk~i~ 55 (57)
T d1dxsa_ 1 SLVSFLTGLGCPNCIEYFTSQGLQSIYHLQNLT-------IEDLGA---------LKIPEQYRMTIWRGLQ 55 (57)
T ss_dssp CHHHHHHHTTCTTSHHHHHTTTCCCHHHHHTCC-------HHHHHH---------TTCCTTTHHHHHHHHH
T ss_pred CHHHHHHHCCcHHHHHHHHHccCCcHHHHHHhh-------HHHHHH---------cCCCHHHHHHHHHHHH
Confidence 677888888888888888888887655444432 222222 3334566888888876
No 5
>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase isozyme l1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.71 E-value=41 Score=26.59 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=20.5
Q ss_pred cCCCccccccc---ccCCCCccccCchhHhhhh
Q psy10515 31 KNGCGTQGIKK---RLPEHNKIIAQPDIKSSLY 60 (280)
Q Consensus 31 ~~~~~~~~~~~---~~~~~~~~~~~p~~~~~v~ 60 (280)
.|.|||+++.- -.|++..|--.+.+++|..
T Consensus 87 ~NACgT~AlLh~l~N~~~~~~i~~gs~L~~f~~ 119 (223)
T d2etla1 87 GNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLS 119 (223)
T ss_dssp BTCHHHHHHHHHHHTTTTTCCBCTTCHHHHHHH
T ss_pred cchhhHHHHHHHHhcCcccccccchhHHHHHHH
Confidence 49999999763 3355445666667777766
No 6
>d1v7la_ c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyrococcus horikoshii [TaxId: 53953]}
Probab=8.55 E-value=53 Score=24.43 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=14.4
Q ss_pred HHHHHHhhhhhceeeccC-CCccc
Q psy10515 15 DFVREVCIAQSAIVLNKN-GCGTQ 37 (280)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~-~~~~~ 37 (280)
||+.++-- -.-+|..+| |||.|
T Consensus 44 ~f~~~~~~-g~IlVaG~nfG~GSS 66 (162)
T d1v7la_ 44 DFARNVRP-GDVVVAGKNFGIGSS 66 (162)
T ss_dssp THHHHCCT-TCEEECCSSBTBSCC
T ss_pred hhhhhccc-ccEEEEecccccCCc
Confidence 56666422 245777788 99977
No 7
>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain {Thauera aromatica [TaxId: 59405]}
Probab=7.60 E-value=76 Score=20.82 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=17.9
Q ss_pred hhhhhcchHHHHHHHhhhhhceeeccCCCcc
Q psy10515 6 KIADCLSLRDFVREVCIAQSAIVLNKNGCGT 36 (280)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (280)
.+.+-.+|-||+||- -...-.|.||++
T Consensus 17 ~v~~~~~Ll~~LR~~----lgltgtK~gC~~ 43 (81)
T d1rm6c2 17 LVPDNMLLLDYLRET----VGLTGTKQGCDG 43 (81)
T ss_dssp EEETTCBHHHHHHHT----TCCTTSCCCSSS
T ss_pred ecCCCCCHHHHHHHh----hCCcccccCCcc
Confidence 345567899999983 233445888874
No 8
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=7.23 E-value=2.6e+02 Score=18.89 Aligned_cols=28 Identities=7% Similarity=-0.190 Sum_probs=20.4
Q ss_pred ccCCcccCchhHhHHHHHHHHHHHHHhcc
Q psy10515 245 GLGYVKFSPGAVGFFGVLSSAAALYTIVN 273 (280)
Q Consensus 245 ~lg~~~~~~g~VG~~G~iSSlig~y~~W~ 273 (280)
.-|-.+..+.-+....+++++-|++. |.
T Consensus 64 ~~G~f~~~d~~~~~~~il~~lng~~~-Wy 91 (115)
T d1jt6a2 64 LNGEWSINDVNAVSKIAANAVNGIVT-FT 91 (115)
T ss_dssp TTTSCCCSCHHHHHHHHHHHHHHHHH-SC
T ss_pred HCCceeccCHHHHHHHHHHHHHHHHH-Hh
Confidence 34556666777788888888888885 65
No 9
>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=6.56 E-value=96 Score=20.19 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=16.5
Q ss_pred hhhcchHHHHHHHhhhhhceeeccCCCcc
Q psy10515 8 ADCLSLRDFVREVCIAQSAIVLNKNGCGT 36 (280)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (280)
..=.+|-||+||- -..--.|.|||+
T Consensus 18 ~~~~~Ll~~LR~~----~gl~gtK~GC~~ 42 (79)
T d1ffva2 18 EPRTLLIHFLREE----LNLTGAHIGCET 42 (79)
T ss_dssp CTTCBHHHHHHHT----SCCTTSCCCCSS
T ss_pred CCCCCHHHHHhhh----cCCcccccCCcc
Confidence 3446789999973 233445788875
No 10
>d1ug7a_ a.24.24.1 (A:) Domain from hypothetical 2610208m17rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.33 E-value=42 Score=24.08 Aligned_cols=15 Identities=60% Similarity=0.700 Sum_probs=11.2
Q ss_pred cccchhhhhcchHHH
Q psy10515 2 KTQIKIADCLSLRDF 16 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (280)
|+-.|||-||.||.-
T Consensus 68 K~l~kIAtCLelRS~ 82 (128)
T d1ug7a_ 68 KTIGKIATCLELRSA 82 (128)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345689999999853
Done!