RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10515
         (280 letters)



>gnl|CDD|218675 pfam05648, PEX11, Peroxisomal biogenesis factor 11 (PEX11).  This
           family consists of several peroxisomal biogenesis factor
           11 (PEX11) proteins from several eukaryotic species. The
           PEX11 peroxisomal membrane proteins promote peroxisome
           division in multiple eukaryotes.
          Length = 225

 Score =  134 bits (340), Expect = 1e-38
 Identities = 54/210 (25%), Positives = 103/210 (49%), Gaps = 15/210 (7%)

Query: 77  LILLVQFASRMVWDITEKHSLMSKHSVEKIKLLEFHLAMFRRLLRLGRCFDALYSALPLL 136
           L+  +Q+ASR++     +    S   + ++K LE   ++ R+LLRLG+  + L +A    
Sbjct: 17  LLRTLQYASRLLAWYLYR-KGSSPELIARLKNLESQFSLSRKLLRLGKFLEHLQAAAKYY 75

Query: 137 H--HPDKMIQMFTIMTKIAQGMYLLCDHIVWFGRVGLMEMDTVHWTGT-ANRYFFYSLVL 193
               PD ++++  ++  +   +YL  DHI+W  ++GL+++         ++R++ + L+L
Sbjct: 76  DNKLPDPVLRLLAVLRNLGYALYLPFDHILWLAKIGLLKVKNAKRWSRISSRFWLFGLLL 135

Query: 194 MLARDIYEILQLYD----VTKRSYRKVPLGELVCS-------NKSLFLDLFKNVFDVLIP 242
            L RD+ E+ QL +    + K    +                  +  LDL KN+ D+ I 
Sbjct: 136 SLVRDLRELRQLQEKEKKLKKEKDSEGESTSERKLLKKILKKRPAALLDLVKNLCDLFIA 195

Query: 243 ATGLGYVKFSPGAVGFFGVLSSAAALYTIV 272
              LG ++F+ G VG  G +SS   +Y + 
Sbjct: 196 LNSLGILRFNDGLVGLAGTISSLIGIYQLW 225


>gnl|CDD|165536 PHA03279, PHA03279, envelope glycoprotein K; Provisional.
          Length = 361

 Score = 30.8 bits (69), Expect = 0.68
 Identities = 31/140 (22%), Positives = 45/140 (32%), Gaps = 11/140 (7%)

Query: 144 QMFTIMTKIAQGMYLLCDHI------VWFGRVGLMEMDTVH---WTGTANRYFFYSLVLM 194
                   I   +  L D+        W  R   +  D  H   WT  A R F     L 
Sbjct: 148 DQRCASAAILHMLAFLADNCQRRGFGPWLCRANALRADAYHLNYWTAFAARLFLKVPYLK 207

Query: 195 LARDIYEILQLYDVTKRSYRKVPLGELVCSNKSLFLDLFKNV--FDVLIPATGLGYVKFS 252
           L R + E     D    ++   PLG  +C   +L L   +    F  LI +     + F 
Sbjct: 208 LQRFLREFEHRRDCKSLNFSADPLGFCICHPGALLLKAIEIGLYFASLIASAMTLRICFD 267

Query: 253 PGAVGFFGVLSSAAALYTIV 272
           P AV     +   A ++   
Sbjct: 268 PCAVILHEHVKIFAWVFVAA 287


>gnl|CDD|151798 pfam11357, Spy1, Cell cycle regulatory protein.  Speedy (Spy1) is a
           cell cycle regulatory protein which activates CDK2, the
           major kinase that allows progression through G1/S phase
           and further replication events. Spy1 expression
           overcomes a p27-induced cell cycle arrest to allow for
           DNA synthesis, so cell cycle progression occurs due to
           an interaction between Spy1 and p27. Spy1 is also known
           as Ringo protein A.
          Length = 131

 Score = 28.9 bits (65), Expect = 1.6
 Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 13/101 (12%)

Query: 140 DKMIQMFTIMTKIAQ--GMYLLCDHIVWFGRVGLMEMDTVHWTGTANRYFFYSLVLMLAR 197
           D ++Q F    K  +    YLL   I +F R GL        +    R  F+ L L LA 
Sbjct: 12  DPVVQEFLAWDKCLRVSDKYLLAMVIAYFSRAGL-------PSWEYTRIHFF-LALYLAN 63

Query: 198 DIYEILQLYDVTKRSYRKVPLGELVCSNKSLFLDLFKNVFD 238
           D+ E  +     K+      LG+   S   LFL L    + 
Sbjct: 64  DMEEDEEAP---KQEIFPFLLGKNWRSQFPLFLKLRDQFWA 101


>gnl|CDD|236307 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase
           subunit; Validated.
          Length = 451

 Score = 29.0 bits (66), Expect = 3.2
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 18  REVCIAQSAIVLNKNGCGTQGIKKRLPEHNKIIAQPDIKSSLYNFH 63
           RE  IA+    L++      GIK  +P H +++  P+ ++  YN H
Sbjct: 396 REEAIARMKRALSE--FVIDGIKTTIPLHLRLLNDPNFQAGDYNIH 439


>gnl|CDD|180466 PRK06202, PRK06202, hypothetical protein; Provisional.
          Length = 232

 Score = 28.0 bits (63), Expect = 5.0
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 119 LLRLGRCFDALYSALPLLHH--PDKMIQMFTIMTKIAQGMYLLCD 161
           L+  G  FD + S    LHH    +++++      +A+ + L  D
Sbjct: 123 LVAEGERFDVVTSNH-FLHHLDDAEVVRLLADSAALARRLVLHND 166


>gnl|CDD|139576 PRK13444, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
          Length = 127

 Score = 26.8 bits (59), Expect = 7.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 253 PGAVGFFGVLSSAAAL 268
           PG+ GFFG+L + A L
Sbjct: 28  PGSEGFFGILPNHAPL 43


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.329    0.141    0.431 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,292,812
Number of extensions: 1365921
Number of successful extensions: 1432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1428
Number of HSP's successfully gapped: 16
Length of query: 280
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 184
Effective length of database: 6,679,618
Effective search space: 1229049712
Effective search space used: 1229049712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.3 bits)