RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10515
(280 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 1e-04
Identities = 45/220 (20%), Positives = 70/220 (31%), Gaps = 61/220 (27%)
Query: 84 ASRMVWDITEKHSLMSKH--SVEKI-----KLLEFHLAMFRRLLRLGRCFDALYSALPLL 136
A++ VW+ + H + S+ I L H + G+ YSA+
Sbjct: 1641 AAQDVWNRADNH-FKDTYGFSILDIVINNPVNLTIHFGGEK-----GKRIRENYSAMIFE 1694
Query: 137 HHPDKMIQMFTIMTKIAQGMYLLCDHIVWFGRVGLMEMDTVHWTGT--ANRYFFYSLVLM 194
D ++ I +I + + GL+ T T A L LM
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYT----FRSEKGLL-SATQF---TQPA-------LTLM 1739
Query: 195 -LARDIYEILQLYDVTKRSYRKVP---------LGE---LVCSNKSLFL-DLFKNVF--- 237
A +E L +S +P LGE L + + L + VF
Sbjct: 1740 EKA--AFEDL-------KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRG 1790
Query: 238 ---DVLIPATGLGYVKFSPGAV--GFFGVLSSAAALYTIV 272
V +P LG + A+ G S AL +V
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Score = 33.9 bits (77), Expect = 0.073
Identities = 32/139 (23%), Positives = 48/139 (34%), Gaps = 39/139 (28%)
Query: 9 DCLS-LRD-------FVREVCIAQSAIVLNKNGCGTQGIKKRLPEHNKIIAQP-DIKSSL 59
D LRD V ++ I SA L + + + K+ Q +I L
Sbjct: 168 DYFEELRDLYQTYHVLVGDL-IKFSAETL-------SELIRTTLDAEKVFTQGLNILEWL 219
Query: 60 YN---FHAENQLNTLFGSCSLILLVQFASRMVWDITEKHSLMSKHSVEKIKLLEFHLAMF 116
N ++ L ++ SC LI ++Q A H V KLL F
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLA----------------HYVVTAKLLGFTPGEL 263
Query: 117 RRLLR--LGRCFDALYSAL 133
R L+ G L +A+
Sbjct: 264 RSYLKGATG-HSQGLVTAV 281
Score = 32.7 bits (74), Expect = 0.17
Identities = 34/199 (17%), Positives = 62/199 (31%), Gaps = 67/199 (33%)
Query: 11 LSLRDFVREVCIAQSAI-VLNKNGCGTQGIKKRLPEHNKI-IAQPDIKSSLYNFHAENQL 68
LS+ + +E Q + N LP ++ I SL N L
Sbjct: 339 LSISNLTQEQ--VQDYVNKTNS----------HLPAGKQVEI-------SLVN--GAKNL 377
Query: 69 N------TLFGSCSLILLVQFASRMVWDITEKHSLMSKHSVEKIKL----LE----FH-- 112
+L+G + + S + D + S K+K L FH
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGL--DQSRI-----PFSERKLKFSNRFLPVASPFHSH 430
Query: 113 -LA-----MFRRLLRLGRCFDALYSALPLLHHPD-KMIQMFTIMTKIAQGMYLLCDHIVW 165
L + + L++ F+A +P+ D +++ + I++ + D I+
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS--GSISE---RIVDCII- 484
Query: 166 FGRVGLMEMDTVHWTGTAN 184
V W T
Sbjct: 485 --------RLPVKWETTTQ 495
Score = 30.4 bits (68), Expect = 0.72
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 36 TQGIKKRLPEHNKIIAQPDIKSSLYNFHAENQLNTLFGSCSLILLVQFASRMV-WDITEK 94
+ I K L ++N DI+ +Y+ + L L GS S ++ V W+ T +
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 95 HSLMSKHSVEKIKLLEF 111
+ H +L+F
Sbjct: 496 FK--ATH------ILDF 504
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.009
Identities = 42/307 (13%), Positives = 81/307 (26%), Gaps = 118/307 (38%)
Query: 5 IKIADCLSLRDFVREV--------------------------CIAQSAIV-------LNK 31
+ DC ++D + + Q +V L
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 32 NGCGTQGIKKRLPEHNKIIAQPDIKSSLYNFHAENQLNTLFGSCSLILLVQFASRMVWDI 91
N + + + + QP + + +Y Q + L+ + FA V +
Sbjct: 90 N---YKFLMSPIKTEQR---QPSMMTRMY----IEQRDRLYNDNQV-----FAKYNVSRL 134
Query: 92 TEKHSL-----------------MS---KHS--VEKIKLLEFHLAMFRRL--LRLGRCFD 127
L + K ++ + M ++ L L C
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC-- 192
Query: 128 ALYSALPLLHHPDKMIQMF-TIMTKIAQGMYLLCDHIVWFGRVGLMEMDTVHWTGTANRY 186
+ P+ +++M ++ +I DH +H R
Sbjct: 193 ---------NSPETVLEMLQKLLYQIDPNWTSRSDHSS-------NIKLRIHSIQAELRR 236
Query: 187 FFYS-------LVLMLARDIY--EILQLYDVTKRSYRKVPLGELVCSNKSLFLDLFKNVF 237
S LVL ++ + ++++ C K L FK V
Sbjct: 237 LLKSKPYENCLLVL---LNVQNAKAWNAFNLS-------------C--KILLTTRFKQVT 278
Query: 238 DVLIPAT 244
D L AT
Sbjct: 279 DFLSAAT 285
Score = 34.8 bits (79), Expect = 0.028
Identities = 45/283 (15%), Positives = 80/283 (28%), Gaps = 101/283 (35%)
Query: 39 IKKRLPEHNKIIAQPDIKSSL------YNFHAENQLNTLFGSCSLILLVQFASRMVWDI- 91
I+ L +++ ++ L N N SC ++L +F V D
Sbjct: 230 IQAEL---RRLLKSKPYENCLLVLLNVQN---AKAWNAFNLSCKILLTTRFKQ--VTDFL 281
Query: 92 ---TEKHSLMSKHSV-----EKIKLLE-------------------FHLAMFRRLLRLGR 124
T H + HS+ E LL L++ +R G
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 125 C---------FDALYSA----LPLLHHPD--KMIQMFTIM---TKIAQGMYLLCDHIVWF 166
D L + L +L + KM ++ I LL ++WF
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI--LLS--LIWF 397
Query: 167 G---RVGLMEMDTVHWTGTANR------YFFYSLVLMLAR-------------DIYEILQ 204
++ ++ +H + S+ L L D Y I +
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 205 LYDVTKRS------Y---------RKVPLGELVCSNKSLFLDL 232
+D Y + + E + + +FLD
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular
chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 27.7 bits (62), Expect = 1.1
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 181 GTANRYFFYSLVLMLARDIYEILQL-----YDVTKRSYRK 215
G++ + L D Y +L + K++Y+K
Sbjct: 1 GSSGSSGILQSLSALDFDPYRVLGVSRTASQADIKKAYKK 40
>1xr5_A Genome polyprotein; RNA-dependent RNA polymerase, transferase;
2.80A {Human rhinovirus 14} SCOP: e.8.1.4
Length = 466
Score = 27.4 bits (60), Expect = 5.3
Identities = 16/128 (12%), Positives = 32/128 (25%), Gaps = 7/128 (5%)
Query: 86 RMVWDITEKHSLMSKHSVEKIKLLEFHLAMFRRLLRLGRCFDALYSALPLLHHPDKMIQM 145
+ K L S V K + + + LY A
Sbjct: 151 DLPLVTYIKDELRSVDKVRLGKSRLIEASSLNDSVNMRMKLGNLYKAFHQNPGVLTGSA- 209
Query: 146 FTIMTKIAQGMYLLCDHIVWFGRVGLMEMDTVHWTGTANRYFFYSLVLMLARDIYEILQL 205
+ + I LM D ++ + + +F L +L + + L
Sbjct: 210 ------VGCDPDVFWSVIPCLMDGHLMAFDYSNFDASLSPVWFVCLEKVLTKLGFAGSSL 263
Query: 206 YDVTKRSY 213
++
Sbjct: 264 IQSICNTH 271
>1ra6_A P3D, genome polyprotein; nucleotidyltransferase, RNA-dependent,
polym terminus, transferase; 2.00A {Human poliovirus 1}
SCOP: e.8.1.4 PDB: 1ra7_A* 2ily_A* 2ilz_A* 2im0_A*
2im1_A* 2im2_A* 2im3_A* 2ijf_A 3ol9_A* 3ol7_A 3ol8_A
3ol6_A* 3ola_A* 3olb_A* 1tql_A 1rdr_A 1raj_A 3ddk_A
3cdu_A 3cdw_A
Length = 461
Score = 27.5 bits (60), Expect = 5.7
Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 7/119 (5%)
Query: 79 LLVQFASRMVWDITEKHSLMSKHSVEKIKLLEFHLAMFRRLLRLGRCFDALYSALPLLHH 138
LL + + K L SK VE+ K + + + F LY+A
Sbjct: 144 LLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPG 203
Query: 139 PDKMIQMFTIMTKIAQGMYLLCDHIVWFGRVGLMEMDTVHWTGTANRYFFYSLVLMLAR 197
+ + L I L D + + + +F +L ++L +
Sbjct: 204 -------VITGSAVGXDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEK 255
>3kg4_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative; 1.95A {Mannheimia
succiniciproducens}
Length = 235
Score = 26.5 bits (58), Expect = 10.0
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 112 HLAMFRRLLRLGRCFDALY 130
H+ MF+R G+CF
Sbjct: 137 HIEMFKRRALKGQCFQQPC 155
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.141 0.431
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,304,086
Number of extensions: 251691
Number of successful extensions: 635
Number of sequences better than 10.0: 1
Number of HSP's gapped: 631
Number of HSP's successfully gapped: 15
Length of query: 280
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 188
Effective length of database: 4,133,061
Effective search space: 777015468
Effective search space used: 777015468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.1 bits)