RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10515
         (280 letters)



>d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit
           {Desulfovibrio desulfuricans [TaxId: 876]}
          Length = 537

 Score = 26.7 bits (58), Expect = 4.1
 Identities = 12/70 (17%), Positives = 24/70 (34%)

Query: 152 IAQGMYLLCDHIVWFGRVGLMEMDTVHWTGTANRYFFYSLVLMLARDIYEILQLYDVTKR 211
           +  G   + DH+V F  +  ++   V     A+      L   ++       +   V  +
Sbjct: 99  LVLGNQFMHDHLVHFYHLHALDFVDVTSALLADPAKAAKLANSISPRKATTEEFAAVQAK 158

Query: 212 SYRKVPLGEL 221
               V  G+L
Sbjct: 159 LKTFVASGQL 168


>d1lvaa4 a.4.5.35 (A:575-634) C-terminal fragment of elongation
           factor SelB {Moorella thermoacetica [TaxId: 1525]}
          Length = 60

 Score = 24.3 bits (53), Expect = 4.6
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 5/32 (15%)

Query: 110 EFHLAMFRRLLRLGRCFDALYSALPLLHHPDK 141
            F LA  R  L   R +      LPLL + D+
Sbjct: 18  PFGLAEARDALGSSRKY-----VLPLLEYLDQ 44


>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
           methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 328

 Score = 26.3 bits (57), Expect = 4.7
 Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 19/131 (14%)

Query: 93  EKHSLMSKHSVEKIKLLEFHLAMFRRLLRLGRCFDA-LYSALPLLHHPDKMIQMFTIMTK 151
            +     K   +K          F       R  +  +         P+   Q+      
Sbjct: 196 REFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFAN 255

Query: 152 IAQGMYLLC----------------DHIVWFGRVGLME--MDTVHWTGTANRYFFYSLVL 193
           + +G  ++                   I    RV  +     +V WTG    Y+ +++  
Sbjct: 256 MKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSPLKGSVSWTGKPVSYYLHTIDR 315

Query: 194 MLARDIYEILQ 204
            +  + +  L+
Sbjct: 316 TILENYFSSLK 326


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.141    0.431 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,048,033
Number of extensions: 47097
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 6
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.1 bits)