Query psy10518
Match_columns 381
No_of_seqs 156 out of 358
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 20:15:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2184|consensus 100.0 3.3E-68 7.1E-73 547.0 20.2 346 27-381 293-639 (767)
2 PF07842 GCFC: GC-rich sequenc 100.0 5E-65 1.1E-69 487.5 18.8 267 82-351 2-276 (276)
3 KOG2184|consensus 99.4 3.7E-13 8E-18 140.5 6.3 68 1-68 593-660 (767)
4 PF07842 GCFC: GC-rich sequenc 99.4 9.5E-12 2.1E-16 119.3 15.2 213 161-380 25-260 (276)
5 PF02520 DUF148: Domain of unk 73.7 5.2 0.00011 32.8 4.1 79 15-101 23-101 (113)
6 PF06761 IcmF-related: Intrace 28.7 62 0.0013 31.4 3.6 91 13-112 75-187 (312)
7 PF11458 Mistic: Membrane-inte 22.1 3.7E+02 0.008 20.6 6.3 62 50-117 13-74 (84)
8 PRK15043 transcriptional regul 17.7 6.4E+02 0.014 23.8 7.9 34 89-122 98-131 (243)
9 PF09403 FadA: Adhesion protei 14.4 3.1E+02 0.0067 23.2 4.4 36 26-61 90-125 (126)
10 PF07217 Het-C: Heterokaryon i 14.2 4.7E+02 0.01 28.0 6.5 73 187-266 466-541 (606)
No 1
>KOG2184|consensus
Probab=100.00 E-value=3.3e-68 Score=547.00 Aligned_cols=346 Identities=40% Similarity=0.768 Sum_probs=330.0
Q ss_pred HHHHHHHHHHHHhhhhHhhhcccHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCChhhhHhhhHHHHhhcCchH
Q psy10518 27 YDQVANWYQGWKSLFTENLLQEPIIKEHFRSALDMMSRSVAGGGDTLPPPPPPPPPKEPSPSSSKHENHFAEYCMYDLSS 106 (381)
Q Consensus 27 ~~ev~~Wy~~wK~~l~~~L~~e~~~~~~l~~~L~lme~~~~~~~~~~~~~~~~tL~~l~~~f~~l~~~~~~ey~~~~l~~ 106 (381)
...++.-|....+.+...+..+....++++.+.+.++++.-.. .+...|++.|...|++|+.+||++|..|+|+.
T Consensus 293 e~~~~~~le~~~e~~~~~~~~~~~~~~~l~~~~e~v~~~e~~~-----~~~~~tld~~~~~fe~L~~eY~~~~~~~~l~~ 367 (767)
T KOG2184|consen 293 ERDQALNLEKEIEKLEEELDLEKTHEQSLRKVEESVDEAELDV-----SSKRLTLDELAILFELLRMEYPEEYTLKSLSS 367 (767)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhcc-----CCccccHHHHHHHHHHhhhhcccccccccccc
Confidence 4567888999999999999999999999999999999999764 34458999999999999999999999999999
Q ss_pred HHHHhhhHHHHHhhccCCCCcCCcccHHHHHHHHHhhchhhcccccCCCCCChHHHHHHHHhhHHHHH-HhhccCCCCCc
Q psy10518 107 LAVSLLKPIFKDILSAWNPLEDARKPISLFQEWKSILEIEQVHSLSTISSTDPYQRIVWDALMPCFRI-AASTWNCKKQC 185 (381)
Q Consensus 107 ~~~~~~~pll~~~~~~W~pl~~p~~~~~~l~~w~~il~~~~~~~~~~~~~~~~y~~li~~~~~p~~r~-~i~~W~~~~~~ 185 (381)
+|++++.|++.+.|..|+|+.+|+++++.+++||.+|........ ....++|++++|..++|.+|. +++.|.++ ++
T Consensus 368 ~a~~i~~pL~~~~~~~Wdpl~d~~~g~e~i~~wk~lL~~~~~~~~--~~~~~~~~~li~e~~~p~vr~~~l~~w~~~-d~ 444 (767)
T KOG2184|consen 368 IAVSIVLPLLKRYLKFWDPLEDPYSGLESISKWKALLEQSDDLRK--RDEIDPYSSLIWEGVMPKVRKAELATWEPR-DM 444 (767)
T ss_pred chhhhhhHHHHHHhhccCcccCccchhHHHHHHHhhhhhhccchh--hccccccceeeeeeecHHHHHHHHhccCcc-ch
Confidence 999999999999999999999999999999999999988854321 245789999999999999999 57999999 99
Q ss_pred chHHHHHHHhcccccHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCccceeecchhcccccchhhhhHHHHHHHHHhccc
Q psy10518 186 EPMLRLVEAWKPLLPTWMVANILQQEILPKILAEVEDWNPLTDTVPIHSWVLPWVPLLGHHFSTAIYPTIRHKLSAALVN 265 (381)
Q Consensus 186 ~~~l~ll~~W~~lLp~~~~~~ile~~IlPkL~~~v~~W~p~~~~~p~h~wl~pWlp~l~~~l~~~l~~~ir~Kl~~~l~~ 265 (381)
.+|++++++|.++||.+|.|||++++|+|||.++|++|+|++|.+|+|.|+|||+|+++.|++ .+|+.||.||+.+|..
T Consensus 445 ~~m~~lle~W~~~lp~~VldnIl~~~v~pkl~~~v~~W~p~~d~~~i~swi~pwl~il~~r~~-~l~~~i~~Kls~~l~~ 523 (767)
T KOG2184|consen 445 LPMLSLLEAWVPLLPSWVLDNILDQLVLPKLSAAVSQWDPLTDTVPIHSWIHPWLPILGQRLE-SLYPSIRSKLSIALDA 523 (767)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhcccccceeeecchHHHhhhHH-HhhhHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999 6999999999999999
Q ss_pred cCCCCchhhhccccchhccCcchHHHHHHhhhHHHHHHHhcccccCCCCCCchhHHHHhchhhccchHHHHHHHHHhhhH
Q psy10518 266 WHPSDYSARLLILPWTNVFSRGETDAFLLQNIVPKLHIALQEFVINPQQQHLDNWNWVMEWSELLSSQTMASILSASFFP 345 (381)
Q Consensus 266 W~~~d~~~~~~L~pWk~v~~~~~~~~~l~~~ivPkL~~~L~~~~inP~~q~l~~~~~v~~W~~li~~~~~~~ll~~~fFp 345 (381)
|+|+|++++.+|+|||.||++.+|++++.++|+|||+.+|.++.|||.+|+++.|.+|+.|+++++++.|+++++.||||
T Consensus 524 W~p~d~sa~~~l~pWK~~f~~~~~~~~~~~~ivpkl~~~l~e~~inp~~q~l~~~~~v~~w~~~i~~~~~~~l~~~hffp 603 (767)
T KOG2184|consen 524 WHPSDRSAIAILSPWKTVFDAASWKEFMRRYIVPKLQLALDELQINPMNQDLERFTWVMEWKGLIDPHLMAQLLERHFFP 603 (767)
T ss_pred CCCcccCchhhhccchhccchhhHHHHHhhcccccHHHHhhhhccCccccchhhhhhhhhhhcccCHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhhHHhhC
Q psy10518 346 KWLQVLSMWLNINPNYDQVANWYQGWKSLFTENLLQ 381 (381)
Q Consensus 346 kW~~~L~~WL~~~~~~~ev~~Wy~~Wk~~f~~~ll~ 381 (381)
||+++||+||+++|+|+||..||.|||++||.++++
T Consensus 604 kwl~~l~~WL~n~p~~~Ei~~wy~gwK~~~~~~ll~ 639 (767)
T KOG2184|consen 604 KWLNVLYHWLSNSPDYDEISRWYTGWKSMFPQELLA 639 (767)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHhHHHhccHhhhc
Confidence 999999999999999999999999999999999875
No 2
>PF07842 GCFC: GC-rich sequence DNA-binding factor-like protein; InterPro: IPR022783 Sequences in this group are similar to a region of a human GC-rich sequence DNA-binding factor homologue (Q9Y5B6 from SWISSPROT). This is thought to be a protein involved in transcriptional regulation due to partial homologies to a transcription repressor and histone-interacting protein []. This entry also contains tuftelin interacting protein 11 which has been identified as both a nuclear and cytoplasmic protein, and has been implicated in the secretory pathway. Sip1, a septin interacting protein [] is also a member of this family. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=5e-65 Score=487.49 Aligned_cols=267 Identities=43% Similarity=0.842 Sum_probs=254.4
Q ss_pred CCCCCChhhhHhhhHHHHhhcCchHHHHHhhhHHHHHhhccCCCCcCCcccHHHHHHHHHhhchhhccc-ccCCCCCChH
Q psy10518 82 PKEPSPSSSKHENHFAEYCMYDLSSLAVSLLKPIFKDILSAWNPLEDARKPISLFQEWKSILEIEQVHS-LSTISSTDPY 160 (381)
Q Consensus 82 ~~l~~~f~~l~~~~~~ey~~~~l~~~~~~~~~pll~~~~~~W~pl~~p~~~~~~l~~w~~il~~~~~~~-~~~~~~~~~y 160 (381)
+.+...|++++++||+||++|+|+.+++++++|++|..+.+|+||++|+++++.+.+||++|+.+...+ ..+++.+++|
T Consensus 2 ~~i~~~fe~l~~~~~~ey~~~~l~~~~~~~~~P~lr~~l~~W~PL~~p~~~~~~l~~~~~lL~~~~~~~~~~~~~~~~~y 81 (276)
T PF07842_consen 2 EPILSRFEELKEKFPEEYRDAYLSLLAPALIAPLLRLELQNWDPLEDPSYGVDELKRWRSLLENDQDSSSSSSNRNMTPY 81 (276)
T ss_pred hHHHHHHHHHHHHCHHHHHHcChHHHHHHHHHHHHHHHHhccCCccCcchHHHHHHHHHHHHhhcccccccccccccCcH
Confidence 445678999999999999999999999999999999999999999999999999999999999664332 2366778999
Q ss_pred HHHHHHHhhHHHHHHh-hccCCCCCcchHHHHHHHhcccccHHHHHHHHHHhHHHHHHHHhhccCCCCCCC-----Cccc
Q psy10518 161 QRIVWDALMPCFRIAA-STWNCKKQCEPMLRLVEAWKPLLPTWMVANILQQEILPKILAEVEDWNPLTDTV-----PIHS 234 (381)
Q Consensus 161 ~~li~~~~~p~~r~~i-~~W~~~~~~~~~l~ll~~W~~lLp~~~~~~ile~~IlPkL~~~v~~W~p~~~~~-----p~h~ 234 (381)
++|+|..|+|++|.++ ++|+++ +|+++++++++|+++||+++.++|+||+|+|||+++|++|||+++++ |+|.
T Consensus 82 e~l~w~~~lp~~~~~~~~~w~~~-~~~~~~~ll~~W~~~Lp~~~~~~ileqlVlPKL~~~V~~WdP~s~~~t~~~~~~h~ 160 (276)
T PF07842_consen 82 ESLIWEIWLPKVRSAIANEWDPR-DPDPDLSLLEAWSPLLPPWILDNILEQLVLPKLQAAVEEWDPLSDSQTRNLVPLHS 160 (276)
T ss_pred HHhhHHHHHHHHHHhhhcccCCC-CCchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCcccCcccccccchHHH
Confidence 9999999999999777 899999 99999999999999999999999999999999999999999999887 9999
Q ss_pred eeecchhccc-ccchhhhhHHHHHHHHHhccccCCCCchhhhccccchhccCcchHHHHHHhhhHHHHHHHhcccccCCC
Q psy10518 235 WVLPWVPLLG-HHFSTAIYPTIRHKLSAALVNWHPSDYSARLLILPWTNVFSRGETDAFLLQNIVPKLHIALQEFVINPQ 313 (381)
Q Consensus 235 wl~pWlp~l~-~~l~~~l~~~ir~Kl~~~l~~W~~~d~~~~~~L~pWk~v~~~~~~~~~l~~~ivPkL~~~L~~~~inP~ 313 (381)
|||||+|++| ++++ +|++.||+||+++|++|+++ +++..+|+|||+||++++|++++.+||+|||+.+|++|+|||+
T Consensus 161 wl~pwlp~l~~~~l~-~l~~~ir~kl~~~l~~W~~~-~~~~~~l~~Wk~vf~~~~~~~~~~~~i~Pkl~~~l~~~~i~p~ 238 (276)
T PF07842_consen 161 WLFPWLPLLGSERLE-PLYPAIRRKLRSALDNWHPS-RSALAMLSPWKDVFIPEEWDKLLLRHILPKLAKFLREFVINPR 238 (276)
T ss_pred HHhccCcccCchhHH-HHHHHHHHHHHHHHHccCcc-cchhhhhhHHHHhCCHhhHHHHHHHhhchHHHHHHHhCCCChh
Confidence 9999999999 8999 89999999999999999999 8889999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHhchhhccchHHHHHHHHHhhhHHHHHHH
Q psy10518 314 QQHLDNWNWVMEWSELLSSQTMASILSASFFPKWLQVL 351 (381)
Q Consensus 314 ~q~l~~~~~v~~W~~li~~~~~~~ll~~~fFpkW~~~L 351 (381)
+|++++|++|++|++++++++|++|++++|||||+++|
T Consensus 239 ~q~l~~~~~vl~W~~~l~~~~l~~ll~~~ffpkwl~~L 276 (276)
T PF07842_consen 239 QQDLKPLRNVLAWKDLLPPSVLVQLLEDEFFPKWLQVL 276 (276)
T ss_pred hcCHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999986
No 3
>KOG2184|consensus
Probab=99.38 E-value=3.7e-13 Score=140.50 Aligned_cols=68 Identities=50% Similarity=1.121 Sum_probs=66.4
Q ss_pred ChhhHHhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhhHhhhcccHHHHHHHHHHHHHHHHhcC
Q psy10518 1 MASILSASFFPKWLQVLSMWLNINPNYDQVANWYQGWKSLFTENLLQEPIIKEHFRSALDMMSRSVAG 68 (381)
Q Consensus 1 ~~~~l~~~ffp~w~~~l~~wl~~~~~~~ev~~Wy~~wK~~l~~~L~~e~~~~~~l~~~L~lme~~~~~ 68 (381)
||.++++||||||+++||.||+..|||+||..||.|||++|+..+.+++.+.+.+++++++|++|...
T Consensus 593 ~~~l~~~hffpkwl~~l~~WL~n~p~~~Ei~~wy~gwK~~~~~~ll~~~~v~~~~k~~ld~~~r~~~~ 660 (767)
T KOG2184|consen 593 MAQLLERHFFPKWLNVLYHWLSNSPDYDEISRWYTGWKSMFPQELLANPYVKDKFKRGLDMMNRAVER 660 (767)
T ss_pred HHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHhHHHhccHhhhcCchhhhhhhhhHHHHHHhhcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999987
No 4
>PF07842 GCFC: GC-rich sequence DNA-binding factor-like protein; InterPro: IPR022783 Sequences in this group are similar to a region of a human GC-rich sequence DNA-binding factor homologue (Q9Y5B6 from SWISSPROT). This is thought to be a protein involved in transcriptional regulation due to partial homologies to a transcription repressor and histone-interacting protein []. This entry also contains tuftelin interacting protein 11 which has been identified as both a nuclear and cytoplasmic protein, and has been implicated in the secretory pathway. Sip1, a septin interacting protein [] is also a member of this family. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.38 E-value=9.5e-12 Score=119.31 Aligned_cols=213 Identities=21% Similarity=0.372 Sum_probs=175.4
Q ss_pred HHHHHHHhhHHHHHHhhccCCCCCcchHHHHHHHhcccccH-------------HHHHHHHHHhHHHHHH-HHhhccCCC
Q psy10518 161 QRIVWDALMPCFRIAASTWNCKKQCEPMLRLVEAWKPLLPT-------------WMVANILQQEILPKIL-AEVEDWNPL 226 (381)
Q Consensus 161 ~~li~~~~~p~~r~~i~~W~~~~~~~~~l~ll~~W~~lLp~-------------~~~~~ile~~IlPkL~-~~v~~W~p~ 226 (381)
..++-+++.|-+|..+.+|||-++|+.+++.+..|+.+|.. ..++.++-..++|++. +.+.+|+|+
T Consensus 25 ~~~~~~~~~P~lr~~l~~W~PL~~p~~~~~~l~~~~~lL~~~~~~~~~~~~~~~~~ye~l~w~~~lp~~~~~~~~~w~~~ 104 (276)
T PF07842_consen 25 SLLAPALIAPLLRLELQNWDPLEDPSYGVDELKRWRSLLENDQDSSSSSSNRNMTPYESLIWEIWLPKVRSAIANEWDPR 104 (276)
T ss_pred HHHHHHHHHHHHHHHHhccCCccCcchHHHHHHHHHHHHhhcccccccccccccCcHHHhhHHHHHHHHHHhhhcccCCC
Confidence 36778899999999999999998899999999999999972 3578899999999999 455999998
Q ss_pred CCCCCccceeecchhcccccchhhh-hHHHHHHHHHhccccCCC-Cc------hhhhccccchhccCcchHHHHHHhhhH
Q psy10518 227 TDTVPIHSWVLPWVPLLGHHFSTAI-YPTIRHKLSAALVNWHPS-DY------SARLLILPWTNVFSRGETDAFLLQNIV 298 (381)
Q Consensus 227 ~~~~p~h~wl~pWlp~l~~~l~~~l-~~~ir~Kl~~~l~~W~~~-d~------~~~~~L~pWk~v~~~~~~~~~l~~~iv 298 (381)
+..|.-..+--|-|+|+.-+.+.+ -..|-.|+..+++.|+|. +. +.+..+.||-+.++.+.++. +...|.
T Consensus 105 -~~~~~~~ll~~W~~~Lp~~~~~~ileqlVlPKL~~~V~~WdP~s~~~t~~~~~~h~wl~pwlp~l~~~~l~~-l~~~ir 182 (276)
T PF07842_consen 105 -DPDPDLSLLEAWSPLLPPWILDNILEQLVLPKLQAAVEEWDPLSDSQTRNLVPLHSWLFPWLPLLGSERLEP-LYPAIR 182 (276)
T ss_pred -CCchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCcccCcccccccchHHHHHhccCcccCchhHHH-HHHHHH
Confidence 466778888899999996444344 455789999999999994 32 34567999999999777887 778899
Q ss_pred HHHHHHhcccccCCCCCCchhHHHHhchhhccchHHHHHHHHHhhhHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhhhH
Q psy10518 299 PKLHIALQEFVINPQQQHLDNWNWVMEWSELLSSQTMASILSASFFPKWLQVLSMWLNIN-PNYDQVANWYQGWKSLFTE 377 (381)
Q Consensus 299 PkL~~~L~~~~inP~~q~l~~~~~v~~W~~li~~~~~~~ll~~~fFpkW~~~L~~WL~~~-~~~~ev~~Wy~~Wk~~f~~ 377 (381)
-||+.+|++.+.. -.+...+..|+++++++.+..++.+++.||-..+|++.-..+ -.--+.-+|-.-|++++|.
T Consensus 183 ~kl~~~l~~W~~~-----~~~~~~l~~Wk~vf~~~~~~~~~~~~i~Pkl~~~l~~~~i~p~~q~l~~~~~vl~W~~~l~~ 257 (276)
T PF07842_consen 183 RKLRSALDNWHPS-----RSALAMLSPWKDVFIPEEWDKLLLRHILPKLAKFLREFVINPRQQDLKPLRNVLAWKDLLPP 257 (276)
T ss_pred HHHHHHHHccCcc-----cchhhhhhHHHHhCCHhhHHHHHHHhhchHHHHHHHhCCCChhhcCHHHHHHHHHHHhhCCH
Confidence 9999999988544 134567778999999999999999999999999999555554 1235777888889999988
Q ss_pred Hhh
Q psy10518 378 NLL 380 (381)
Q Consensus 378 ~ll 380 (381)
+.+
T Consensus 258 ~~l 260 (276)
T PF07842_consen 258 SVL 260 (276)
T ss_pred HHH
Confidence 765
No 5
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=73.73 E-value=5.2 Score=32.85 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=61.8
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhhhhHhhhcccHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCChhhhHhh
Q psy10518 15 QVLSMWLNINPNYDQVANWYQGWKSLFTENLLQEPIIKEHFRSALDMMSRSVAGGGDTLPPPPPPPPPKEPSPSSSKHEN 94 (381)
Q Consensus 15 ~~l~~wl~~~~~~~ev~~Wy~~wK~~l~~~L~~e~~~~~~l~~~L~lme~~~~~~~~~~~~~~~~tL~~l~~~f~~l~~~ 94 (381)
+.+..|......-+++..+-+-.+....+.......++++|..+..-+....+ +..+|..+-......|+..
T Consensus 23 ~~l~~Wa~~~~v~~~~~~f~~~~~~~~~~~~~~~~~vi~~L~~a~~~l~~I~~--------n~~lT~~q~~~~I~~l~~~ 94 (113)
T PF02520_consen 23 EQLDEWAEKYGVQDQYNEFKAQVQAQKEEVRKNVTAVISNLSSAFAKLSAILD--------NKSLTRQQQQEAIDALRKQ 94 (113)
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CcccCHHHHHHHHHHHHHH
Confidence 56778886655677788887777777777888888899999988888887776 4556666667789999999
Q ss_pred hHHHHhh
Q psy10518 95 HFAEYCM 101 (381)
Q Consensus 95 ~~~ey~~ 101 (381)
||.++..
T Consensus 95 ~~~e~~~ 101 (113)
T PF02520_consen 95 YPEEVDT 101 (113)
T ss_pred CCHHHHH
Confidence 9998654
No 6
>PF06761 IcmF-related: Intracellular multiplication and human macrophage-killing; InterPro: IPR009612 This entry represents a conserved region within several bacterial proteins that resemble ImcF, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation, resulting in increased adherence to epithelial cells and increased conjugation frequency. Note that many entry members are hypothetical proteins.
Probab=28.66 E-value=62 Score=31.36 Aligned_cols=91 Identities=11% Similarity=0.176 Sum_probs=52.8
Q ss_pred HHHHHHHHhCC----CCCHHHHHHHHH-HHHhhhhHhhh---cccHHHHHHHHHH--H-----------HHHHHhcCCCC
Q psy10518 13 WLQVLSMWLNI----NPNYDQVANWYQ-GWKSLFTENLL---QEPIIKEHFRSAL--D-----------MMSRSVAGGGD 71 (381)
Q Consensus 13 w~~~l~~wl~~----~~~~~ev~~Wy~-~wK~~l~~~L~---~e~~~~~~l~~~L--~-----------lme~~~~~~~~ 71 (381)
=+++|+.+|+. +-|-+.|..|.. .|...++.... .......+++..+ . +|.++.+..
T Consensus 75 ~y~aLk~YLML~~~~~~d~~~l~~w~~~~w~~~~~~~~~~~~~~~~l~~hl~~ll~~~~~~~~~~~d~~LV~~AR~~L-- 152 (312)
T PF06761_consen 75 LYEALKAYLMLTDPEHRDADFLKAWLAQDWQEQYPGQPDQAELRAQLAFHLDALLGDAHPQPPIPPDDELVAQARANL-- 152 (312)
T ss_pred HHHHHHHHHhcCCCccCCHHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHhhccCccCCCCCCHHHHHHHHHHH--
Confidence 36788889885 366889999997 67777777644 2344444555555 0 111111110
Q ss_pred CCCCCCCCCCCCCCCChhhhHhhh-HHHHhhcCchHHHHHhh
Q psy10518 72 TLPPPPPPPPPKEPSPSSSKHENH-FAEYCMYDLSSLAVSLL 112 (381)
Q Consensus 72 ~~~~~~~~tL~~l~~~f~~l~~~~-~~ey~~~~l~~~~~~~~ 112 (381)
.+.+.....+.+++... ++.+..+.|.+.+..-.
T Consensus 153 -------~~~~~~~rvY~~l~~~~~~~~~~~~~L~~~~G~~~ 187 (312)
T PF06761_consen 153 -------SRVPLAERVYQRLKAEAEAERLPPFTLADALGPSA 187 (312)
T ss_pred -------HcCCchhHHHHHHHHHHhhcccCCCcHHHHhChhh
Confidence 11222345577777777 56667777766554443
No 7
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=22.14 E-value=3.7e+02 Score=20.63 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCChhhhHhhhHHHHhhcCchHHHHHhhhHHHH
Q psy10518 50 IIKEHFRSALDMMSRSVAGGGDTLPPPPPPPPPKEPSPSSSKHENHFAEYCMYDLSSLAVSLLKPIFK 117 (381)
Q Consensus 50 ~~~~~l~~~L~lme~~~~~~~~~~~~~~~~tL~~l~~~f~~l~~~~~~ey~~~~l~~~~~~~~~pll~ 117 (381)
..+++++++|+.+=.+-+.+ ....++-++...-++|-+.-.+-|-.-.+.+-.-+++..++.
T Consensus 13 ~AID~mnEGLD~fI~lYNeS------e~DepLiql~detael~~~A~~~yG~e~~n~klN~iIkqiLs 74 (84)
T PF11458_consen 13 TAIDRMNEGLDTFIQLYNES------EKDEPLIQLEDETAELIRQAREKYGQEKLNEKLNAIIKQILS 74 (84)
T ss_pred HHHHHHHhhHHHHHHHHccc------ccccchhhcchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 34577777777666665542 334456677777788888888888888888888887777776
No 8
>PRK15043 transcriptional regulator MirA; Provisional
Probab=17.65 E-value=6.4e+02 Score=23.77 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=29.8
Q ss_pred hhhHhhhHHHHhhcCchHHHHHhhhHHHHHhhcc
Q psy10518 89 SSKHENHFAEYCMYDLSSLAVSLLKPIFKDILSA 122 (381)
Q Consensus 89 ~~l~~~~~~ey~~~~l~~~~~~~~~pll~~~~~~ 122 (381)
.++...+.+....|++..++..+++|++.++-.+
T Consensus 98 ~~l~~~l~~a~~~yp~~~~~~~vl~Pl~~~l~~~ 131 (243)
T PRK15043 98 HSLRTWIKERGQDYPAQTLTTHLFIPLRRRLQCQ 131 (243)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhCC
Confidence 4578888888999999999999999999987765
No 9
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=14.40 E-value=3.1e+02 Score=23.18 Aligned_cols=36 Identities=11% Similarity=0.327 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHhhhhHhhhcccHHHHHHHHHHHH
Q psy10518 26 NYDQVANWYQGWKSLFTENLLQEPIIKEHFRSALDM 61 (381)
Q Consensus 26 ~~~ev~~Wy~~wK~~l~~~L~~e~~~~~~l~~~L~l 61 (381)
.|.++..=|..=++.+.+++..++.+++.|+.+..+
T Consensus 90 eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~i~~~ 125 (126)
T PF09403_consen 90 EYKELLKKYKDLLNKLDKEIAEQEQIIDNFEKIQSL 125 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 388999999999999999999999999999988764
No 10
>PF07217 Het-C: Heterokaryon incompatibility protein Het-C; InterPro: IPR010816 In filamentous fungi, het loci (for heterokaryon incompatibility) are believed to regulate self/nonself-recognition during vegetative growth. As filamentous fungi grow, hyphal fusion occurs within an individual colony to form a network. Hyphal fusion can occur also between different individuals to form a heterokaryon, in which genetically distinct nuclei occupy a common cytoplasm. However, heterokaryotic cells are viable only if the individuals involved have identical alleles at all het loci [].
Probab=14.18 E-value=4.7e+02 Score=28.02 Aligned_cols=73 Identities=16% Similarity=0.402 Sum_probs=46.1
Q ss_pred hHHHHHHHhccccc--HHHHHHHHHHhHHHHHHHHhhccCCCCCCCCccceeecchhcccc-cchhhhhHHHHHHHHHhc
Q psy10518 187 PMLRLVEAWKPLLP--TWMVANILQQEILPKILAEVEDWNPLTDTVPIHSWVLPWVPLLGH-HFSTAIYPTIRHKLSAAL 263 (381)
Q Consensus 187 ~~l~ll~~W~~lLp--~~~~~~ile~~IlPkL~~~v~~W~p~~~~~p~h~wl~pWlp~l~~-~l~~~l~~~ir~Kl~~~l 263 (381)
.||+- +.++.+|. ..-....+-++++|++.. .|+.. .+|++.-+-.+|..+-+ .+. .--..|++.+-.+.
T Consensus 466 SmLSK-DHFsNILNepAG~vA~~iv~~vVp~vv~---AWdd~--~vdv~~vl~~il~vfHHPa~r-d~~~eiqr~Mf~~V 538 (606)
T PF07217_consen 466 SMLSK-DHFSNILNEPAGRVASAIVKWVVPRVVY---AWDDP--SVDVDRVLNDILRVFHHPAFR-DMNSEIQREMFETV 538 (606)
T ss_pred hhhhh-hhhhHHHhhHHHHHHHHHHHHHHHHHHH---HhCCC--CCCHHHHHHHHHHHcCCcccC-CchhHHHHHHHHHH
Confidence 45543 67788885 344566666899999985 57753 45555555555555552 233 33566777777777
Q ss_pred ccc
Q psy10518 264 VNW 266 (381)
Q Consensus 264 ~~W 266 (381)
+.|
T Consensus 539 ~~W 541 (606)
T PF07217_consen 539 EEW 541 (606)
T ss_pred HHH
Confidence 777
Done!