Query psy10518
Match_columns 381
No_of_seqs 156 out of 358
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 20:16:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sz9_A PCF11 protein; RNA poly 18.1 1.4E+02 0.0048 24.3 4.6 51 158-209 76-133 (144)
2 1ygm_A Hypothetical protein BS 13.8 2.3E+02 0.0078 21.7 4.3 64 52-121 45-108 (118)
3 2akf_A Coronin-1A; coiled coil 12.7 2E+02 0.0067 17.0 2.8 27 39-65 2-28 (32)
4 3qf7_D MRE11; ABC-ATPase, ATPa 11.5 2.8E+02 0.0097 17.9 3.5 36 33-68 9-44 (50)
5 2avr_X Adhesion A; antiparalle 11.3 2.4E+02 0.008 22.5 3.9 33 26-58 72-104 (119)
6 3etw_A Adhesin A; antiparallel 11.1 2.9E+02 0.0099 22.0 4.4 34 27-60 73-106 (119)
7 3n1e_A Vacuolar protein sortin 11.1 6.4E+02 0.022 20.5 7.4 60 171-230 35-106 (141)
8 2klq_A CBD, P105MCM, DNA repli 10.7 2.5E+02 0.0087 21.9 4.0 41 24-67 35-75 (114)
9 3d9j_A RNA-binding protein 16; 10.1 4.3E+02 0.015 21.3 5.4 93 106-211 41-135 (145)
10 2wl8_A Peroxisomal biogenesis 8.2 4.9E+02 0.017 20.8 4.8 55 10-69 42-105 (126)
No 1
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=18.07 E-value=1.4e+02 Score=24.34 Aligned_cols=51 Identities=16% Similarity=0.282 Sum_probs=37.2
Q ss_pred ChHHHHHHHHhhHHHHHHhhccCCCCCcchHHHHHHHhc-------ccccHHHHHHHHH
Q psy10518 158 DPYQRIVWDALMPCFRIAASTWNCKKQCEPMLRLVEAWK-------PLLPTWMVANILQ 209 (381)
Q Consensus 158 ~~y~~li~~~~~p~~r~~i~~W~~~~~~~~~l~ll~~W~-------~lLp~~~~~~ile 209 (381)
.+|.......+.+.+..++..-|.. .-..+.+++..|+ ++.|+.+.+.|=+
T Consensus 76 ~~y~~~F~~~l~~~f~~~~~~~d~~-~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~ 133 (144)
T 1sz9_A 76 SPYTIYFSRNLFNLYKRTYLLVDNT-TRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQ 133 (144)
T ss_dssp TTHHHHHHTTHHHHHHHHHHTSCHH-HHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHH
Confidence 4687777777777777777554444 5578999999998 8899777655443
No 2
>1ygm_A Hypothetical protein BSU31320; alpha-helical bundle, integral membrane protein; NMR {Bacillus subtilis subsp}
Probab=13.76 E-value=2.3e+02 Score=21.73 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCChhhhHhhhHHHHhhcCchHHHHHhhhHHHHHhhc
Q psy10518 52 KEHFRSALDMMSRSVAGGGDTLPPPPPPPPPKEPSPSSSKHENHFAEYCMYDLSSLAVSLLKPIFKDILS 121 (381)
Q Consensus 52 ~~~l~~~L~lme~~~~~~~~~~~~~~~~tL~~l~~~f~~l~~~~~~ey~~~~l~~~~~~~~~pll~~~~~ 121 (381)
+++++++|+.+=.+-+.+ ....++-++...-++|-++-.+-|-.-.+.+-.-+++..++.-.++
T Consensus 45 IDrmnEGLD~fIqlYNeS------e~DepLiqledetael~~qA~~~yG~e~~N~klN~IIkqiLs~sls 108 (118)
T 1ygm_A 45 IDRMNEGLDAFIQLYNES------EIDEPLIQLDDDTAELMKQARDMYGQEKLNEKLNTIIKQILSISVS 108 (118)
T ss_dssp HHTTTHHHHHHHHHCCSS------SCSSCSSCSHHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHTTTS
T ss_pred HHHHhhhHHHHHHHHccc------cccccccccchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Confidence 455555555544444432 3344556667777888888888888889999888888888764433
No 3
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=12.72 E-value=2e+02 Score=17.01 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=18.4
Q ss_pred hhhhHhhhcccHHHHHHHHHHHHHHHH
Q psy10518 39 SLFTENLLQEPIIKEHFRSALDMMSRS 65 (381)
Q Consensus 39 ~~l~~~L~~e~~~~~~l~~~L~lme~~ 65 (381)
+++++++.....+.+.+++-++.++.-
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777776666543
No 4
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=11.51 E-value=2.8e+02 Score=17.85 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=28.7
Q ss_pred HHHHHHhhhhHhhhcccHHHHHHHHHHHHHHHHhcC
Q psy10518 33 WYQGWKSLFTENLLQEPIIKEHFRSALDMMSRSVAG 68 (381)
Q Consensus 33 Wy~~wK~~l~~~L~~e~~~~~~l~~~L~lme~~~~~ 68 (381)
.++..|+-+.....+++..+.-|++.++-+.+...+
T Consensus 9 ~felfkey~k~r~~~he~l~k~~~ell~evkkseag 44 (50)
T 3qf7_D 9 YFELFKEYLKKREENHEKLLKILDELLDEVKKSEAG 44 (50)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc
Confidence 566778889999999999999999999988876654
No 5
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=11.30 E-value=2.4e+02 Score=22.50 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHhhhhHhhhcccHHHHHHHHH
Q psy10518 26 NYDQVANWYQGWKSLFTENLLQEPIIKEHFRSA 58 (381)
Q Consensus 26 ~~~ev~~Wy~~wK~~l~~~L~~e~~~~~~l~~~ 58 (381)
.|+++..=|..-++.|.+++..+..+++.|+.+
T Consensus 72 eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nFe~I 104 (119)
T 2avr_X 72 QYQELASKYEDALKKLEAEMEQQKAVISDFEKI 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999999999999987
No 6
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=11.14 E-value=2.9e+02 Score=21.96 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhhhHhhhcccHHHHHHHHHHH
Q psy10518 27 YDQVANWYQGWKSLFTENLLQEPIIKEHFRSALD 60 (381)
Q Consensus 27 ~~ev~~Wy~~wK~~l~~~L~~e~~~~~~l~~~L~ 60 (381)
|++++.=|..-++.+.+++..+..+++.|+.+-.
T Consensus 73 y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ik~ 106 (119)
T 3etw_A 73 YQELASKYEDALKKLEAEMEQQKAVISDFEKIQA 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999987753
No 7
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=11.06 E-value=6.4e+02 Score=20.48 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=41.8
Q ss_pred HHHHHhhccCCCC-Ccc--------hHHHHHHHhcccccHHHHHHHHHHh---HHHHHHHHhhccCCCCCCC
Q psy10518 171 CFRIAASTWNCKK-QCE--------PMLRLVEAWKPLLPTWMVANILQQE---ILPKILAEVEDWNPLTDTV 230 (381)
Q Consensus 171 ~~r~~i~~W~~~~-~~~--------~~l~ll~~W~~lLp~~~~~~ile~~---IlPkL~~~v~~W~p~~~~~ 230 (381)
++...+++||.+. .|. .+..|-+.=.++||+.....|+.++ .--+|.+++..-++.++.-
T Consensus 35 r~~~~l~~Wd~k~pvpS~~m~tl~Ke~~kLH~~Ls~~LP~~~v~~Im~~Vf~~fk~~l~~~~~~~~i~~~~G 106 (141)
T 3n1e_A 35 LFDKLLSKYEVKAPVPSPCFRNICKQMTKMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSHLNVINDGG 106 (141)
T ss_dssp HHHHHHTTCCCCSSSSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSS
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 4444457899762 233 3455667778999988877777653 3378999999999987653
No 8
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=10.69 E-value=2.5e+02 Score=21.90 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHhhhhHhhhcccHHHHHHHHHHHHHHHHhc
Q psy10518 24 NPNYDQVANWYQGWKSLFTENLLQEPIIKEHFRSALDMMSRSVA 67 (381)
Q Consensus 24 ~~~~~ev~~Wy~~wK~~l~~~L~~e~~~~~~l~~~L~lme~~~~ 67 (381)
...-+|+.+||...++ .++.+++...+.-+-+-.++.++..
T Consensus 35 G~~~~eLv~WYLeq~e---~~i~seeel~~e~~lv~kVI~rLI~ 75 (114)
T 2klq_A 35 ALKRSELVNWYLKEIE---SEIDSEEELINKKRIIEKVIHRLTH 75 (114)
T ss_dssp CBCHHHHHHHHHHHHT---TTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHhh
Confidence 4678899999977654 6788888888887888888888877
No 9
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=10.13 E-value=4.3e+02 Score=21.30 Aligned_cols=93 Identities=9% Similarity=0.154 Sum_probs=57.9
Q ss_pred HHHHHhhhHHHHHhhccCCCCcCCcccHHHHHHHHHhhchhhcccccCCCCCChHHHHHHHHhhHHHHHHhhccCCCCCc
Q psy10518 106 SLAVSLLKPIFKDILSAWNPLEDARKPISLFQEWKSILEIEQVHSLSTISSTDPYQRIVWDALMPCFRIAASTWNCKKQC 185 (381)
Q Consensus 106 ~~~~~~~~pll~~~~~~W~pl~~p~~~~~~l~~w~~il~~~~~~~~~~~~~~~~y~~li~~~~~p~~r~~i~~W~~~~~~ 185 (381)
..+|..+...++. ..|++-+..|.-.-+|.+...... +...++|-......+.+.++..... ++. .-
T Consensus 41 ~~IV~~~~~~i~k--------~~~~~KL~~LYL~DsIvrn~~~k~---~~~~~~f~~~F~~~L~~~f~~~~~~-~~~-~r 107 (145)
T 3d9j_A 41 KHVVQSVEKFIQK--------CKPEYKVPGLYVIDSIVRQSRHQF---GQEKDVFAPRFSNNIISTFQNLYRC-PGD-DK 107 (145)
T ss_dssp HHHHHHHHHHHHH--------SCGGGHHHHHHHHHHHHHHHHHHH---CTTTCSHHHHHHHHHHHHHHHHTSS-CGG-GH
T ss_pred HHHHHHHHHHHHh--------CCccceeehhhhhHHHHHHhhhhc---CCccccHHHHHHHHHHHHHHHHHhC-CHH-HH
Confidence 4455555555554 245565666655666666554321 1123467777666666666655421 233 56
Q ss_pred chHHHHHHHhc--ccccHHHHHHHHHHh
Q psy10518 186 EPMLRLVEAWK--PLLPTWMVANILQQE 211 (381)
Q Consensus 186 ~~~l~ll~~W~--~lLp~~~~~~ile~~ 211 (381)
..+.+++..|+ ++.|+.+++.|-+.+
T Consensus 108 ~kl~rLl~iW~~r~vF~~~~l~~l~~~l 135 (145)
T 3d9j_A 108 SKIVRVLNLWQKNNVFKSEIIQPLLDMA 135 (145)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 79999999996 899998888877654
No 10
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=8.24 E-value=4.9e+02 Score=20.78 Aligned_cols=55 Identities=29% Similarity=0.355 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhhHhhhc---c------cHHHHHHHHHHHHHHHHhcCC
Q psy10518 10 FPKWLQVLSMWLNINPNYDQVANWYQGWKSLFTENLLQ---E------PIIKEHFRSALDMMSRSVAGG 69 (381)
Q Consensus 10 fp~w~~~l~~wl~~~~~~~ev~~Wy~~wK~~l~~~L~~---e------~~~~~~l~~~L~lme~~~~~~ 69 (381)
||+||+.-..=| -.|=..-|+.-.+.+.+.+.. + +...++++.++++|.+..+.+
T Consensus 42 yP~WLe~nk~~l-----~~Ed~~RY~kQ~~lv~~I~~~fE~~~~~D~~~~~~~~~~~i~~Lmq~mQ~~G 105 (126)
T 2wl8_A 42 YPEWLQSHRESL-----PPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDLG 105 (126)
T ss_dssp HHHHHHHHGGGS-----CHHHHHHHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHhCcccC-----CHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHcC
Confidence 888888854433 222333343443333332222 1 123578999999999988864
Done!