Query psy10518
Match_columns 381
No_of_seqs 156 out of 358
Neff 7.4
Searched_HMMs 13730
Date Fri Aug 16 20:16:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10518.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10518hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hlba_ a.1.1.2 (A:) Hemoglobi 9.1 2.9E+02 0.021 20.1 6.1 96 34-146 53-148 (157)
2 d2icga1 d.369.1.1 (A:1-158) Un 8.6 18 0.0013 27.7 -1.8 27 76-102 23-49 (158)
3 d2ckca1 d.76.2.1 (A:2563-2622) 7.6 34 0.0025 22.3 -0.4 13 15-27 27-39 (60)
4 d1szaa_ a.118.9.4 (A:) PCF11 p 6.7 2E+02 0.015 21.2 3.9 68 129-207 57-131 (144)
5 d1iufa1 a.4.1.7 (A:-2-75) Ars- 6.0 2.1E+02 0.016 19.2 3.1 25 346-370 15-42 (78)
6 d2paga1 d.369.1.1 (A:1-135) Hy 5.9 28 0.002 26.5 -1.9 18 85-102 28-45 (135)
7 d1no1a_ a.179.1.1 (A:) Repliso 5.5 1.3E+02 0.0098 18.7 1.7 36 174-209 11-51 (67)
8 d1pjqa3 e.37.1.1 (A:114-215) S 4.8 3.7E+02 0.027 18.3 4.1 58 10-67 19-80 (102)
9 d1mlwa_ d.178.1.1 (A:) Tryptop 4.6 2.8E+02 0.02 23.4 3.7 97 247-345 33-148 (290)
10 d2d5ba1 a.27.1.1 (A:349-500) M 4.4 5.2E+02 0.038 18.5 5.1 51 55-111 9-59 (152)
No 1
>d1hlba_ a.1.1.2 (A:) Hemoglobin, different isoforms {Caudina arenicola, also known as Molpadia arenicola [TaxId: 7698]}
Probab=9.13 E-value=2.9e+02 Score=20.15 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=55.3
Q ss_pred HHHHHhhhhHhhhcccHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCChhhhHhhhHHHHhhcCchHHHHHhhh
Q psy10518 34 YQGWKSLFTENLLQEPIIKEHFRSALDMMSRSVAGGGDTLPPPPPPPPPKEPSPSSSKHENHFAEYCMYDLSSLAVSLLK 113 (381)
Q Consensus 34 y~~wK~~l~~~L~~e~~~~~~l~~~L~lme~~~~~~~~~~~~~~~~tL~~l~~~f~~l~~~~~~ey~~~~l~~~~~~~~~ 113 (381)
+...++.=.+++...+....+-.++++.++.+.+.+ ++ +.+...+.+|-+.|- .+|+..--...+.
T Consensus 53 F~~f~~~~~~~l~~~~~~~~H~~~v~~~l~~~v~~l------D~----~~l~~~l~~lg~~H~----~~gv~~~~f~~~~ 118 (157)
T d1hlba_ 53 FPQMAGMSASQLRSSRQMQAHAIRVSSIMSEYVEEL------DS----DILPELLATLARTHD----LNKVGADHYNLFA 118 (157)
T ss_dssp SGGGTTCCHHHHTTCHHHHHHHHHHHHHHHHHHTTC------CT----TSHHHHTHHHHHHHH----HTTCCHHHHHHHH
T ss_pred cccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhc------ch----hhHHHHHHHHhhccc----ccCCCHHHHHHHH
Confidence 434444445678888899999999999999999753 11 223445666666653 4566655555555
Q ss_pred HHHHHhhccCCCCcCCcccHHHHHHHHHhhchh
Q psy10518 114 PIFKDILSAWNPLEDARKPISLFQEWKSILEIE 146 (381)
Q Consensus 114 pll~~~~~~W~pl~~p~~~~~~l~~w~~il~~~ 146 (381)
..|-..+..- + .+...-+.-..|..++..-
T Consensus 119 ~~ll~~l~~~--l-g~~~t~~~~~AW~~~~~~i 148 (157)
T d1hlba_ 119 KVLMEALQAE--L-GSDFNEKTRDAWAKAFSVV 148 (157)
T ss_dssp HHHHHHHHHH--H-TTCCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--c-CcCCCHHHHHHHHHHHHHH
Confidence 5554444421 0 1112234455676666543
No 2
>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918 {Listeria innocua [TaxId: 1642]}
Probab=8.62 E-value=18 Score=27.74 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=18.5
Q ss_pred CCCCCCCCCCCChhhhHhhhHHHHhhc
Q psy10518 76 PPPPPPPKEPSPSSSKHENHFAEYCMY 102 (381)
Q Consensus 76 ~~~~tL~~l~~~f~~l~~~~~~ey~~~ 102 (381)
.++.|.+.....=++|.-++|++|+.|
T Consensus 23 ~~~at~E~I~~~E~~LG~~lP~~Yr~f 49 (158)
T d2icga1 23 SGTGTPELIKIYQDALGNEFPETYKLF 49 (158)
T ss_dssp CCCCCHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHH
Confidence 455555555555556888999999876
No 3
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.64 E-value=34 Score=22.30 Aligned_cols=13 Identities=38% Similarity=0.986 Sum_probs=8.5
Q ss_pred HHHHHHhCCCCCH
Q psy10518 15 QVLSMWLNINPNY 27 (381)
Q Consensus 15 ~~l~~wl~~~~~~ 27 (381)
.-|+.||..+|+|
T Consensus 27 ~~L~~WL~~hP~y 39 (60)
T d2ckca1 27 KDLVEWLKLHPTY 39 (60)
T ss_dssp HHHHHHHHHCTTE
T ss_pred HHHHHHHHHCCCc
Confidence 4567777666665
No 4
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.74 E-value=2e+02 Score=21.18 Aligned_cols=68 Identities=13% Similarity=0.214 Sum_probs=40.2
Q ss_pred CcccHHHHHHHHHhhchhhcccccCCCCCChHHHHHHHHhhHHHHHHhhccCCCCCcchHHHHHHHhcc-------cccH
Q psy10518 129 ARKPISLFQEWKSILEIEQVHSLSTISSTDPYQRIVWDALMPCFRIAASTWNCKKQCEPMLRLVEAWKP-------LLPT 201 (381)
Q Consensus 129 p~~~~~~l~~w~~il~~~~~~~~~~~~~~~~y~~li~~~~~p~~r~~i~~W~~~~~~~~~l~ll~~W~~-------lLp~ 201 (381)
|++-+..|.-.-+|++.. ..+|.......+.+.+..+...=+.. .-..+.+++..|+. |.|.
T Consensus 57 ~~~KL~~LYLiddI~~n~----------~~~y~~~f~~~l~~~f~~~y~~~~~~-~r~kl~rll~iW~~r~~~~~~vFp~ 125 (144)
T d1szaa_ 57 PKQKLYAFYALDSICKNV----------GSPYTIYFSRNLFNLYKRTYLLVDNT-TRTKLINMFKLWLNPNDTGLPLFEG 125 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT----------CTTHHHHHHTTHHHHHHHHHTTSCHH-HHHHHHHHHHHHSSGGGCSSCSSCH
T ss_pred cccchhhhhhHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhccCCCCcCCCCH
Confidence 445555555555565432 23566665555555555544433332 34688999999964 8997
Q ss_pred HHHHHH
Q psy10518 202 WMVANI 207 (381)
Q Consensus 202 ~~~~~i 207 (381)
.+++.|
T Consensus 126 ~~l~~i 131 (144)
T d1szaa_ 126 SALEKI 131 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776555
No 5
>d1iufa1 a.4.1.7 (A:-2-75) Ars-binding protein 1, ABP1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=6.04 E-value=2.1e+02 Score=19.19 Aligned_cols=25 Identities=8% Similarity=0.420 Sum_probs=19.9
Q ss_pred HHHHHHHHHh-cCC--CChHHHHHHHHH
Q psy10518 346 KWLQVLSMWL-NIN--PNYDQVANWYQG 370 (381)
Q Consensus 346 kW~~~L~~WL-~~~--~~~~ev~~Wy~~ 370 (381)
-+-.+|+.|- ... +...++.+||+.
T Consensus 15 ~qK~ALR~~~~~~~~~~sqk~l~~WFe~ 42 (78)
T d1iufa1 15 HEKRALRHYFFQLQNRSGQQDLIEWFRE 42 (78)
T ss_dssp HHHHHHHHHHHSSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 4678999996 444 789999999974
No 6
>d2paga1 d.369.1.1 (A:1-135) Hypothetical protein PSPTO5518 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=5.92 E-value=28 Score=26.53 Aligned_cols=18 Identities=6% Similarity=-0.173 Sum_probs=13.2
Q ss_pred CCChhhhHhhhHHHHhhc
Q psy10518 85 PSPSSSKHENHFAEYCMY 102 (381)
Q Consensus 85 ~~~f~~l~~~~~~ey~~~ 102 (381)
...=++|.-.||++|+.|
T Consensus 28 ~~~E~~lg~~~P~~yk~f 45 (135)
T d2paga1 28 VEIEEQLFINIPFVFKEF 45 (135)
T ss_dssp HHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHH
Confidence 344556777899999987
No 7
>d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
Probab=5.53 E-value=1.3e+02 Score=18.67 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=22.6
Q ss_pred HHhhccCCCC-CcchHHHHHHHhcccccH----HHHHHHHH
Q psy10518 174 IAASTWNCKK-QCEPMLRLVEAWKPLLPT----WMVANILQ 209 (381)
Q Consensus 174 ~~i~~W~~~~-~~~~~l~ll~~W~~lLp~----~~~~~ile 209 (381)
++++.+-|.. +|+.+-.-+.+|..+|.+ .+++|+.+
T Consensus 11 kavsefypgrfqpddlkgtvkawhrvlaeyeleeimnnltd 51 (67)
T d1no1a_ 11 KAVSEFYPGRFQPDDLKGTVKAWHRVLAEYELEEIMNNLTD 51 (67)
T ss_dssp HHHHHHSTTTCCCTTHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHCCCCCCccccchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444444433 677788889999988864 44555444
No 8
>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and 3 {Salmonella typhimurium [TaxId: 90371]}
Probab=4.78 E-value=3.7e+02 Score=18.35 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhhhhHhhhcccHHHHHHHHHHH--HHHHHhc
Q psy10518 10 FPKWLQVLSMWLNI--NPNYDQVANWYQGWKSLFTENLLQEPIIKEHFRSALD--MMSRSVA 67 (381)
Q Consensus 10 fp~w~~~l~~wl~~--~~~~~ev~~Wy~~wK~~l~~~L~~e~~~~~~l~~~L~--lme~~~~ 67 (381)
-|.-=..|+.-|.. .++|+++.......+.++.+.+.+.+....-++.+++ .+..+..
T Consensus 19 sP~lar~lR~~lE~~lp~~~~~l~~~~~~~R~~vk~~~~~~~~Rr~fw~~~~~~~~~~~~l~ 80 (102)
T d1pjqa3 19 SPVLARLLREKLESLLPQHLGQVARYAGQLRARVKKQFATMGERRRFWEKFFVNDRLAQSLA 80 (102)
T ss_dssp CHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHcCcHHHHHHh
Confidence 34444556666654 5789999999999999999988888877777777763 4444444
No 9
>d1mlwa_ d.178.1.1 (A:) Tryptophan hydroxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.58 E-value=2.8e+02 Score=23.39 Aligned_cols=97 Identities=18% Similarity=0.245 Sum_probs=65.3
Q ss_pred chhhhhHHHHHHHHHhccccCCCCchhh-----hccccchhccCcchHHHHHHhhhHHHHHHHhcccc----cCCC-CCC
Q psy10518 247 FSTAIYPTIRHKLSAALVNWHPSDYSAR-----LLILPWTNVFSRGETDAFLLQNIVPKLHIALQEFV----INPQ-QQH 316 (381)
Q Consensus 247 l~~~l~~~ir~Kl~~~l~~W~~~d~~~~-----~~L~pWk~v~~~~~~~~~l~~~ivPkL~~~L~~~~----inP~-~q~ 316 (381)
..+..|..=|..+...-.++.++|.-++ ..-..|+.|+. .-.+++.++-.+.....|..+. +++. --+
T Consensus 33 f~d~~yr~rR~~~a~~a~~~k~g~~ip~v~YT~eE~~~W~~l~~--~l~~l~~~~Ac~eyl~gl~~L~~~~g~~~d~IPq 110 (290)
T d1mlwa_ 33 FKDNVYRKRRKYFADLAMNYKHGDPIPKVEFTEEEIKTWGTVFR--ELNKLYPTHACREYLKNLPLLSKYCGYREDNIPQ 110 (290)
T ss_dssp TTCHHHHHHHHHHHHHHHHCCTTSCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHBCHHHHHHHHHHHHHHTCBTTBCCC
T ss_pred CCChHHHHHHHHHHHHHHhCcCCCCCCCCCcCHHHHHHHHHHHH--HHHHHHhccccHHHHHHHHHHHHhcCCCcccCCC
Confidence 4457999988888888778877765432 34688999997 4556777777777777765332 3321 114
Q ss_pred chhHHH----Hhch-----hhccchHHHHHHHHHhhhH
Q psy10518 317 LDNWNW----VMEW-----SELLSSQTMASILSASFFP 345 (381)
Q Consensus 317 l~~~~~----v~~W-----~~li~~~~~~~ll~~~fFp 345 (381)
++.++. ...| .+++++..+=..|..-.||
T Consensus 111 l~~vs~~L~~~TGw~l~pV~Gli~~~~F~~~LA~rvFp 148 (290)
T d1mlwa_ 111 LEDVSNFLKERTGFSIRPVAGYLSPRDFLSGLAFRVFH 148 (290)
T ss_dssp HHHHHHHHHHHTSCEEEECSSBCCHHHHHHHHTTTEEE
T ss_pred HHHHHHHHHHhcCeEEEehhhhcCHHHHHHHHhCCeee
Confidence 444443 3466 4689999988888877776
No 10
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=4.45 E-value=5.2e+02 Score=18.49 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCChhhhHhhhHHHHhhcCchHHHHHh
Q psy10518 55 FRSALDMMSRSVAGGGDTLPPPPPPPPPKEPSPSSSKHENHFAEYCMYDLSSLAVSL 111 (381)
Q Consensus 55 l~~~L~lme~~~~~~~~~~~~~~~~tL~~l~~~f~~l~~~~~~ey~~~~l~~~~~~~ 111 (381)
+++++.++++-.++. . +.. ...+....+..+.++|.+.|+.|++...+-.+
T Consensus 9 v~R~~~~~~k~~~g~--v---P~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~al~~i 59 (152)
T d2d5ba1 9 VQRTRAMLFRFAEGR--I---PEP-VAGEELAEGTGLAGRLRPLVRELKFHVALEEA 59 (152)
T ss_dssp HHHHHHHHHHHSTTB--C---CCC-CCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCc--C---CCC-cchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 356677777665542 1 111 11223355677888888899999887765553
Done!