RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10518
(381 letters)
>gnl|CDD|219603 pfam07842, GCFC, GC-rich sequence DNA-binding factor-like protein.
Sequences found in this family are similar to a region
of a human GC-rich sequence DNA-binding factor homolog.
This is thought to be a protein involved in
transcriptional regulation due to partial homologies to
a transcription repressor and histone-interacting
protein. This family also contains tuftelin interacting
protein 11 which has been identified as both a nuclear
and cytoplasmic protein, and has been implicated in the
secretory pathway. Sip1, a septin interacting protein is
also a member of this family.
Length = 275
Score = 255 bits (652), Expect = 2e-83
Identities = 123/265 (46%), Positives = 169/265 (63%), Gaps = 8/265 (3%)
Query: 93 ENHFAEYCMYDLSSLAVSLLKPIFKDILSAWNPLEDARKPISLFQEWKSILEIEQVHSLS 152
+ EY LS LA +L+ P+ + L W+PLED + + + WK++LE++
Sbjct: 13 RKYPEEYKEAYLSLLAPALVAPLLRLELLEWDPLEDPTYGVDILKRWKALLELDSSDDTG 72
Query: 153 TISSTDPYQRIVWDALMPCFRIAA-STWNCKKQCEPMLRLVEAWKPLLPTWMVANILQQE 211
S DPY+ ++W+ +P +R +A STW+ + +PML L+EAW PLLP++++ NIL+Q
Sbjct: 73 GAESMDPYETMLWEGWLPRYRSSALSTWDPRD-PDPMLNLLEAWAPLLPSFILDNILEQL 131
Query: 212 ILPKILAEVEDWNPLTDTV-----PIHSWVLPWVPLLGHHFSTAIYPTIRHKLSAALVNW 266
+LPK+ A VE+W+PL+DTV PIHSWV PW+PLLG +YP IR KL AL W
Sbjct: 132 VLPKLTAAVEEWDPLSDTVTRHLVPIHSWVFPWLPLLGEARLEPLYPAIRRKLRQALDAW 191
Query: 267 HPSDYSARLLILPWTNVFSRGETDAFLLQNIVPKLHIALQEFVINPQQQHLDNWNWVMEW 326
HPSD SA + PW +VFS E D LL++I+PKL LQEF INP+QQ LD V++W
Sbjct: 192 HPSD-SALAGLKPWKDVFSPAEWDPLLLRHILPKLARFLQEFEINPRQQALDLLRNVLKW 250
Query: 327 SELLSSQTMASILSASFFPKWLQVL 351
LLS +A +L FFPKWLQVL
Sbjct: 251 KGLLSPSVLAELLEKEFFPKWLQVL 275
Score = 28.6 bits (64), Expect = 4.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 1 MASILSASFFPKWLQVL 17
+A +L FFPKWLQVL
Sbjct: 259 LAELLEKEFFPKWLQVL 275
>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal.
Length = 313
Score = 39.8 bits (93), Expect = 0.001
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 16/75 (21%)
Query: 31 ANWYQGWKSLFTENLLQEPIIKEHFR-----------SALDMMSRSVAGGGDTLPPPPPP 79
+W + + +L E + IKEH +A +V+ + PPPPPP
Sbjct: 182 VDWVKSYLNLLKE---LQAYIKEHHTTGLTWSKKGPVAAAKSALPAVSSSAPSAPPPPPP 238
Query: 80 PPPKEPSPSSSKHEN 94
PPP PS + +
Sbjct: 239 PPP--PSVPTISNSV 251
>gnl|CDD|178678 PLN03132, PLN03132, NADH dehydrogenase (ubiquinone) flavoprotein
1; Provisional.
Length = 461
Score = 34.8 bits (80), Expect = 0.077
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 58 ALDMMSRSVAGGGDTLPPPPPPPPPKEPSPSSSKHEN 94
AL S A T PPPPPPPP++ K E+
Sbjct: 1 ALRAFSTQAAATAATPQPPPPPPPPEKTHFGGLKDED 37
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 34.4 bits (79), Expect = 0.11
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 74 PPPPPPPPPKEPSPS 88
PPPPPPP P EP
Sbjct: 274 PPPPPPPEPPEPEEE 288
Score = 33.2 bits (76), Expect = 0.21
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 74 PPPPPPPPPKEPSPS 88
P PPPPPPP EP
Sbjct: 271 PQPPPPPPPPEPPEP 285
Score = 31.7 bits (72), Expect = 0.74
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 75 PPPPPPPPKEPSPSSSKHE 93
PPPPPPPP+ P P E
Sbjct: 273 PPPPPPPPEPPEPEEEPDE 291
Score = 30.5 bits (69), Expect = 1.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 74 PPPPPPPPPKEPSP 87
PPPPP PP E P
Sbjct: 276 PPPPPEPPEPEEEP 289
Score = 29.8 bits (67), Expect = 2.7
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 72 TLPPPPPPPPPKEPSPSSSKHEN 94
P PPPPPP P + +
Sbjct: 268 EPEPQPPPPPPPPEPPEPEEEPD 290
>gnl|CDD|152790 pfam12355, Dscam_C, Down syndrome cell adhesion molecule C
terminal. This domain family is found in eukaryotes,
and is approximately 120 amino acids in length. The
family is found in association with pfam00047,
pfam07679, pfam00041. The Down syndrome cell adhesion
molecule (Dscam) belongs to a family of cell membrane
molecules involved in the differentiation of the
nervous system. This is the C terminal cytoplasmic tail
region of Dscam.
Length = 125
Score = 31.7 bits (71), Expect = 0.22
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 20/86 (23%)
Query: 22 NINPNYDQVANWYQGWKSLFTENLLQEPIIKEHFRSALDMMSRSVAGGGDTLP----PPP 77
N P DQ + Y G +H+ S M RS+ G +P P P
Sbjct: 18 NCAPEEDQYGSQYGG----------PYGAPYDHYGSRGSMGRRSI-GSARNIPGNGSPEP 66
Query: 78 PPPPPK-----EPSPSSSKHENHFAE 98
PPPPP+ S + SK N +E
Sbjct: 67 PPPPPRNHDMNNSSFNDSKESNEISE 92
>gnl|CDD|152747 pfam12312, NeA_P2, Nepovirus subgroup A polyprotein. This family
of proteins is found in viruses. Proteins in this family
are typically between 259 and 1110 amino acids in
length. The family is found in association with
pfam03688, pfam03689, pfam03391. This family is one of
the polyproteins expressed by Nepoviruses in subgroup A.
Length = 175
Score = 31.5 bits (71), Expect = 0.38
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 69 GGDTLPPPPPPPPPKEPSPSSSKHENHFAEYCMYDLSSLAVSL 111
GG LPPPPPPPP ++P PS E C + A +L
Sbjct: 114 GGPCLPPPPPPPPIQKP-PS---FRERLREACRRQSCARAFAL 152
>gnl|CDD|184989 PRK15029, PRK15029, arginine decarboxylase; Provisional.
Length = 755
Score = 32.5 bits (74), Expect = 0.39
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 149 HSLSTISSTDPYQRIVWDALMPCFRIAASTWNCKKQCEPMLRLVEAWKPLLPTWMVAN-- 206
S S + T R + A M + NC K E L L A P +MV +
Sbjct: 222 RSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILTGA----KPVYMVPSRN 277
Query: 207 -------ILQQEILPKILAEVEDWNPLTDTVP 231
I QE+ P+ L + +PLT
Sbjct: 278 RYGIIGPIYPQEMQPETLQKKISESPLTKDKA 309
>gnl|CDD|177622 PHA03386, P10, fibrous body protein; Provisional.
Length = 94
Score = 30.3 bits (68), Expect = 0.42
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 69 GGDTLPPPPPPPPPKEPSPS 88
GD +P PP PP P P P
Sbjct: 60 TGDEVPDPPDPPLPLLPEPE 79
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 32.1 bits (73), Expect = 0.63
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 67 AGGGDTLPPPPPPPPPKEPSPSS 89
G + PPPP PPP P PS
Sbjct: 108 PPGPSSPDPPPPTPPPASPPPSP 130
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 31.8 bits (72), Expect = 0.66
Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 65 SVAGGGDT---LPPPPPPPPPKEPSP 87
S AG D P P P P + P P
Sbjct: 383 SPAGSPDVKKKAPEPDLPQPDRHPGP 408
>gnl|CDD|235309 PRK04596, minC, septum formation inhibitor; Reviewed.
Length = 248
Score = 31.5 bits (71), Expect = 0.66
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 15/48 (31%)
Query: 74 PPPPPPPPPKEPSPSSSKH-------------ENHFAEYCMYDLSSLA 108
PPPPPPP EP+P ++ + +AE C DL+ L+
Sbjct: 121 PPPPPPPARAEPAPPVARPAPGRMQRTAVRSGQQLYAENC--DLTVLS 166
Score = 31.1 bits (70), Expect = 0.78
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 74 PPPPPPPPPKEPSPSS 89
PPPPPPPPP P+
Sbjct: 119 PPPPPPPPPARAEPAP 134
>gnl|CDD|114268 pfam05537, DUF759, Borrelia burgdorferi protein of unknown function
(DUF759). This family consists of several
uncharacterized proteins from the Lyme disease
spirochete Borrelia burgdorferi.
Length = 439
Score = 30.8 bits (69), Expect = 1.2
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 1/21 (4%)
Query: 69 GGDTLPPPPPPPPPKEPSPSS 89
GGD L P K ++
Sbjct: 420 GGDALKKLEEPAENK-DCANN 439
>gnl|CDD|216648 pfam01690, PLRV_ORF5, Potato leaf roll virus readthrough protein.
This family consists mainly of the potato leaf roll
virus readthrough protein. This is generated via a
readthrough of open reading frame 3 a coat protein
allowing transcription of open reading frame 5 to give
an extended coat protein with a large c-terminal
addition or read through domain. The readthrough
protein is thought to play a role in the circulative
aphid transmission of potato leaf roll virus. Also in
the family is open reading frame 6 from beet western
yellows virus and potato leaf roll virus both
luteovirus and an unknown protein from cucurbit
aphid-borne yellows virus a closterovirus.
Length = 460
Score = 30.8 bits (70), Expect = 1.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 74 PPPPPPPPPKEPSPSSSKHENHFA 97
P P PPPP P P+ +KHE
Sbjct: 11 PTPTPPPPAPTPEPTPAKHERFIG 34
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification].
Length = 2365
Score = 31.1 bits (70), Expect = 1.3
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 4/18 (22%)
Query: 74 PPPPPPP----PPKEPSP 87
PPPPPPP PP +P P
Sbjct: 9 PPPPPPPPGFEPPSQPPP 26
Score = 29.6 bits (66), Expect = 3.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 75 PPPPPPPPKEPSPS 88
PPPPPPPP PS
Sbjct: 9 PPPPPPPPGFEPPS 22
Score = 28.8 bits (64), Expect = 6.1
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 72 TLPP--PPPPPPPKEPSPSSSKHENHFAEYCMYDLSSLAVSLLKPIFKDILSAWNPLEDA 129
+LPP PPPPPPP P S + S +S++ I + L +
Sbjct: 3 SLPPGNPPPPPPPPGFEPPSQPPPPPPPGVNVKKRSRKQLSIVGDILGHSGNPIYSLRVS 62
Query: 130 RKPISL 135
KP+ L
Sbjct: 63 DKPVKL 68
>gnl|CDD|197800 smart00592, BRK, domain in transcription and CHROMO domain
helicases.
Length = 45
Score = 27.3 bits (61), Expect = 1.5
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 4 ILSASFFPKWLQVLSMWLNINPNYDQVANW 33
L+ PK + L WL NP Y+
Sbjct: 16 KLTGDDAPK-AKDLERWLEENPEYEVAPRS 44
Score = 27.3 bits (61), Expect = 1.5
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 338 ILSASFFPKWLQVLSMWLNINPNYDQVANW 367
L+ PK + L WL NP Y+
Sbjct: 16 KLTGDDAPK-AKDLERWLEENPEYEVAPRS 44
>gnl|CDD|177445 PHA02662, PHA02662, ORF131 putative membrane protein;
Provisional.
Length = 226
Score = 30.0 bits (67), Expect = 1.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 73 LPPPPPPPPPKEPSPS 88
+PP PP PP+ P P+
Sbjct: 1 MPPRTPPTPPRPPEPT 16
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 30.4 bits (69), Expect = 1.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 74 PPPPPPPPPKEPSP 87
PPPPPPPP + P
Sbjct: 269 PPPPPPPPEDDDDP 282
Score = 30.0 bits (68), Expect = 2.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 71 DTLPPPPPPPPPKEPS 86
PPPPPPPP++
Sbjct: 265 PEEEPPPPPPPPEDDD 280
Score = 28.8 bits (65), Expect = 5.3
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 71 DTLPPPPPPPPPKEPSPSS 89
PPPPPPP E
Sbjct: 264 PPEEEPPPPPPPPEDDDDP 282
>gnl|CDD|215472 PLN02875, PLN02875, 4-hydroxyphenylpyruvate dioxygenase.
Length = 398
Score = 30.0 bits (68), Expect = 2.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 55 FRSALDMMSRSVAGGGDTLPPPPP 78
F + +M +RS GG + +PPPPP
Sbjct: 274 FGTLREMRARSHIGGFEFMPPPPP 297
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator. In
eukaryotes, this family of proteins induces
mitochondrial fission.
Length = 248
Score = 29.3 bits (66), Expect = 2.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 72 TLPPPPPPPPPKEPSP 87
+PPPPPPPPP P
Sbjct: 182 EVPPPPPPPPPPPPPS 197
Score = 28.6 bits (64), Expect = 4.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 71 DTLPPPPPPPPPKEPSPSS 89
L PPPPPPP P P S
Sbjct: 179 PVLEVPPPPPPPPPPPPPS 197
Score = 27.8 bits (62), Expect = 7.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 74 PPPPPPPPPKEPSPSSS 90
PPPPPPPPP S+S
Sbjct: 187 PPPPPPPPPPSLQQSTS 203
>gnl|CDD|223035 PHA03294, PHA03294, envelope glycoprotein H; Provisional.
Length = 835
Score = 30.1 bits (68), Expect = 2.7
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 65 SVAGGGDTLPPPPPPPPPKEPSPSSSKHENHFAEYCMYDLSS 106
G LPPP PPP P++ K +H + L +
Sbjct: 170 KAHPSGVALPPPRAPPPRNTTDPATIKPNDHLNPATTFFLDA 211
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This
family contains bacterial fibronectin-attachment
proteins (FAP). Family members are rich in alanine and
proline, are approximately 300 long, and seem to be
restricted to mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 29.5 bits (66), Expect = 2.9
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 57 SALDMMSRSVAGGGDTLPPPPPPPPPKEPSP 87
SA+ + + A PPPPP P+P
Sbjct: 27 SAVAIALPATANADPAPPPPPPSTAAAAPAP 57
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 29.9 bits (67), Expect = 3.2
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 56 RSALDMMSRSVAGGGDTLPPPPPPPPPKEPSP 87
R A+ + S A D PP P P P P
Sbjct: 2888 RPAVSRSTESFALPPDQPERPPQPQAPPPPQP 2919
Score = 29.1 bits (65), Expect = 5.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 73 LPPPPPPPPPKEPSPSSSKHE 93
LPP P P PSPS + +E
Sbjct: 2617 LPPDTHAPDPPPPSPSPAANE 2637
Score = 28.8 bits (64), Expect = 6.0
Identities = 9/25 (36%), Positives = 9/25 (36%)
Query: 74 PPPPPPPPPKEPSPSSSKHENHFAE 98
P PP P P PS S N
Sbjct: 2616 PLPPDTHAPDPPPPSPSPAANEPDP 2640
Score = 28.4 bits (63), Expect = 8.6
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 74 PPPPPPPPPKEPSPSSS 90
PPPPPP P P S
Sbjct: 2701 PPPPPPTPEPAPHALVS 2717
>gnl|CDD|177646 PHA03418, PHA03418, hypothetical E4 protein; Provisional.
Length = 230
Score = 28.9 bits (64), Expect = 3.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 68 GGGDTLPPPPPPPPPKEPSP 87
G G PPP PP EP P
Sbjct: 165 GEGAVEGHPPPLPPAPEPKP 184
Score = 28.2 bits (62), Expect = 6.4
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 74 PPPPPPPPPKEPSPSSSKH 92
PPP PP P +P + H
Sbjct: 173 PPPLPPAPEPKPHNGDATH 191
>gnl|CDD|139164 PRK12700, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 230
Score = 28.9 bits (64), Expect = 3.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 66 VAGGGDTLPPPPPPPPPKEPSPS 88
V G T PPPPPP P P+ S
Sbjct: 30 VVTGPLTAPPPPPPQPSARPNGS 52
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 29.2 bits (65), Expect = 3.9
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 74 PPPPPPPPPKEPSPSSSK 91
P PP P P ++
Sbjct: 237 APDPPAPAPAPAKTAAPA 254
>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein.
Length = 94
Score = 27.4 bits (60), Expect = 4.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 74 PPPPPPPPPKEPSPS 88
PPPPP PP P P+
Sbjct: 22 PPPPPAPPAPVPEPT 36
Score = 26.2 bits (57), Expect = 10.0
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 74 PPPPPPPPPKEPSP 87
PP PP P P P P
Sbjct: 9 PPEPPAPLPPAPVP 22
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional.
Length = 318
Score = 28.7 bits (64), Expect = 4.8
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 74 PPPPPPPPPKEPSPSSSKHENH 95
PP P PP+ P S
Sbjct: 10 SPPRRPSPPRPTPPRSPDASPE 31
Score = 27.9 bits (62), Expect = 8.8
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 74 PPPPPPPPPKEPSPSSS 90
P PP P P P+P S
Sbjct: 9 PSPPRRPSPPRPTPPRS 25
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 29.0 bits (65), Expect = 4.8
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 14/104 (13%)
Query: 70 GDTLPPPPPPPPPKEPSPSSSKHENHFAEYCMYDLSSLAVSLLKPIFKDILSAWNPLEDA 129
+P PP P+ P+ K E + +SSL S L+PI + A +++A
Sbjct: 432 PAAVPVNPPSTAPQAVRPAQFKEEKKIP---VSKVSSLGPSTLRPIQEKAEQATGNIKEA 488
Query: 130 RKPISLF-----------QEWKSILEIEQVHSLSTISSTDPYQR 162
QE+ E+ T+ + P
Sbjct: 489 PTGTQKEIFTEEDLQYYWQEFAGTRPQEEKALKETMINCRPKLL 532
>gnl|CDD|117486 pfam08919, F_actin_bind, F-actin binding. The F-actin binding
domain forms a compact bundle of four antiparallel
alpha-helices, which are arranged in a left-handed
topology. Binding of F-actin to the F-actin binding
domain may result in cytoplasmic retention and
subcellular distribution of the protein, as well as
possible inhibition of protein function.
Length = 179
Score = 28.1 bits (62), Expect = 5.0
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 73 LPPPPPPPPPKEPSPSSSKHENHFAEYCMYDLSSLAVSLLK 113
PP P P P PSPS + + L S VSL K
Sbjct: 23 TPPSPVPLPSTSPSPSKMANGTQPSSAAFIPLISTRVSLRK 63
>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional.
Length = 200
Score = 28.4 bits (63), Expect = 5.1
Identities = 11/27 (40%), Positives = 11/27 (40%)
Query: 72 TLPPPPPPPPPKEPSPSSSKHENHFAE 98
T P P PPP PSP N E
Sbjct: 55 TTPHPSSQPPPCPPSPGHPPQTNDTHE 81
Score = 27.6 bits (61), Expect = 9.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 75 PPPPPPPPKEPSPSSSKHENHFA 97
PPP PP P P ++ HE A
Sbjct: 63 PPPCPPSPGHPPQTNDTHEKDLA 85
>gnl|CDD|223052 PHA03346, PHA03346, US22 family homolog; Provisional.
Length = 520
Score = 29.0 bits (65), Expect = 5.2
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 67 AGGGDTLPPPPPPPPPKEPSPSSS 90
GGG PPP PP PP P P
Sbjct: 406 DGGGGLAPPPEPPRPPPPPFPDDD 429
>gnl|CDD|236234 PRK08312, PRK08312, putative indolepyruvate oxidoreductase subunit
B; Reviewed.
Length = 510
Score = 28.8 bits (65), Expect = 5.6
Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 5/33 (15%)
Query: 55 FRSALDMMSRSVAGGGDTLPPPPPPPPPKEPSP 87
F + A G PPPP P P P
Sbjct: 205 FAAGFA-----AAQQGGAAPPPPAAAAPTAPRP 232
>gnl|CDD|236692 PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II;
Provisional.
Length = 445
Score = 28.7 bits (64), Expect = 5.7
Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 71 DTLPPPPPPP--------PPKEPSPSSSKHENHF 96
D PPPPPPP P S N F
Sbjct: 128 DVPPPPPPPPVVAKRVETPAVVAPRVSEPARNPF 161
>gnl|CDD|239168 cd02767, MopB_ydeP, The MopB_ydeP CD includes a group of related
uncharacterized bacterial molybdopterin-binding
oxidoreductase-like domains with a putative
molybdopterin cofactor binding site. These members
belong to the molybdopterin_binding (MopB) superfamily
of proteins.
Length = 574
Score = 28.8 bits (65), Expect = 6.2
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 12/82 (14%)
Query: 90 SKHENHFAEYCMYDLSSLAVSLLKPIFKDILSAWNPLEDARKPISLFQEWKSILEIEQV- 148
+ H E+C +LA P A +S + W E+E +
Sbjct: 12 PGQKLHGFEFCENGAKALAWETTPKRV-------TPEFFALHSVSELRTWSD-YELEHLG 63
Query: 149 ---HSLSTISSTDPYQRIVWDA 167
+ + + +D Y+ I WD
Sbjct: 64 RLTYPMRYDAGSDHYRPISWDE 85
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 28.6 bits (64), Expect = 7.3
Identities = 11/46 (23%), Positives = 11/46 (23%), Gaps = 4/46 (8%)
Query: 49 PIIKEHFRSALDMMSRSV----AGGGDTLPPPPPPPPPKEPSPSSS 90
H R GGG PP P P SS
Sbjct: 684 RPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSL 729
>gnl|CDD|178697 PLN03152, PLN03152, hypothetical protein; Provisional.
Length = 241
Score = 27.9 bits (62), Expect = 7.7
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 73 LPPPPPPPPPKEPSPSSS 90
PP P P P++P P S
Sbjct: 11 HPPNPQNPNPRKPKPLSR 28
>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional.
Length = 694
Score = 28.4 bits (63), Expect = 8.6
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 53 EHFRSALDMMSRSVAGGGDTLPPPPP----PPPPKEPSPSSSKHE 93
EH+ ++L R ++ P P PPPP P S+
Sbjct: 416 EHYEASL----RLLSSRQPPGAPAPRRDNDPPPPPRARPGSTPAC 456
>gnl|CDD|211398 cd11560, W2_eIF5C_like, C-terminal W2 domain of the eukaryotic
translation initiation factor 5C and similar proteins.
eIF5C appears to be essential for the initiation of
protein translation; its actual function, and
specifically that of the C-terminal W2 domain, are not
well understood. The Drosophila ortholog, kra
(krasavietz) or exba (extra bases), may be involved in
translational inhibition in neural development. The
structure of this C-terminal domain resembles that of a
set of concatenated HEAT repeats.
Length = 194
Score = 27.6 bits (62), Expect = 8.8
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 142 ILEIEQVHSLSTISSTDPYQRIVWDALMPCFRIAASTWNCKKQ--CEPMLRLVEAWKPLL 199
I +++ S++ + ++W ALM A W+ K+ E LR ++ + PLL
Sbjct: 59 IAAVKEQMKKSSLPEHE-VVGLLWTALM-----DAVEWSKKEDQIAEQALRHLKKYAPLL 112
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional.
Length = 900
Score = 28.1 bits (63), Expect = 8.8
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 70 GDTLPPPPPPPPPKEPSPSSSKHEN 94
D LPPPPP PP P +
Sbjct: 1 KDALPPPPPVVPP-NVVPIKLEPTK 24
>gnl|CDD|215605 PLN03153, PLN03153, hypothetical protein; Provisional.
Length = 537
Score = 28.0 bits (62), Expect = 9.1
Identities = 8/23 (34%), Positives = 8/23 (34%)
Query: 72 TLPPPPPPPPPKEPSPSSSKHEN 94
T PPPP P S N
Sbjct: 82 TPLPPPPSSPSLPSSLLLDHFRN 104
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.446
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,078,797
Number of extensions: 1918922
Number of successful extensions: 4132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3936
Number of HSP's successfully gapped: 88
Length of query: 381
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 282
Effective length of database: 6,546,556
Effective search space: 1846128792
Effective search space used: 1846128792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)