RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10518
(381 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 2e-05
Identities = 61/372 (16%), Positives = 108/372 (29%), Gaps = 127/372 (34%)
Query: 95 HFAEYCMYDLSSLAVS-LLKPIF-----KDILSAWNPLEDARKPISLFQEWKSILEIEQV 148
F + + + V + K I I+ + + + + LF W L +Q
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR---LF--W--TLLSKQ- 75
Query: 149 HSLSTISSTDPYQRIVWDALMPCFRIAASTWNCKKQC----------------------- 185
+ Q+ V + L ++ S K +
Sbjct: 76 --------EEMVQKFVEEVLRINYKFLMSPI--KTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 186 ---------EPMLRLVEAWKPLLP--------------TWMVANILQQEILPKILAEVED 222
+P L+L +A L P TW+ ++ K+ +++
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY---KVQCKMDF 182
Query: 223 ---WNPLT-------DTVPIHSWVL-----PWVPLLGHHFSTAIYPT--IRHKLSAALVN 265
W L +TV L P H S I+ +L L +
Sbjct: 183 KIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 266 WHPSDYSARLLILPWTNVFSRGETDAFLL--QNIVPKLHIALQEFVINPQQQH--LDNWN 321
Y LL+L NV + +AF L + ++ + +F+ H LD+ +
Sbjct: 241 K---PYENCLLVL--LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 322 WVMEWSELLSSQTMASILSASFFPKWLQVLSMWL-----NINPNY---------DQVANW 367
+ E+ S K+L L NP D +A W
Sbjct: 296 MTLTPDEVK-----------SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 368 YQGWKSLFTENL 379
WK + + L
Sbjct: 345 -DNWKHVNCDKL 355
Score = 40.6 bits (94), Expect = 9e-04
Identities = 51/393 (12%), Positives = 114/393 (29%), Gaps = 121/393 (30%)
Query: 15 QVLSMWLNINPNYDQVA----------NWYQGWKS-LFTENLLQEPII-------KEHFR 56
+ + I+PN+ + + Q L + ++ + +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 57 SALDMMSR--------SVAGGGDTLPPPPPPPPPKEPSPSS---SKHENHFAEYC---MY 102
A ++ + V D L + + + ++ +Y
Sbjct: 261 -AFNLSCKILLTTRFKQVT---DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 103 DL-------SSLAVSLLKPIFKDILSAWNPLEDARKPISLFQEWKSILEIEQVHSL--ST 153
DL + +S++ +D L+ W WK + +++ ++ S+
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATW-------------DNWKHV-NCDKLTTIIESS 362
Query: 154 ISSTDPY-QRIVWDALMPCFR----IAAST----WNCKKQCEPMLRLVE-AWKPLLPTWM 203
++ +P R ++D L F I W + + M+ + + L+
Sbjct: 363 LNVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 204 VANI-----LQQEILPKILAE-------VEDWNPLTDTVPIHSWVLP-----WVPLLGHH 246
+ + E+ K+ E V+ +N + T + P + +GHH
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYN-IPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 247 FSTA-------IYPT-------IRHKLSAALVNWHPSDYSARLL---------ILPWTNV 283
++ + K+ W+ S L I
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 284 FSRGETD--AFLLQ---NIVPK-----LHIALQ 306
+ R FL + N++ L IAL
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
Score = 31.4 bits (70), Expect = 0.69
Identities = 30/210 (14%), Positives = 63/210 (30%), Gaps = 61/210 (29%)
Query: 8 SFFPK--WL--QVLSM-WLNINPNYDQ-----------VANWYQGWK----SLFTENLLQ 47
S FP + +LS+ W ++ + V + S++ E ++
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 48 EPIIKEHFRSALDMMSRSVAGGGDTLPPPPPPPPPKEPSPSSSKHENHFAEYCMYDLSSL 107
RS +D + D L PP + +F + + L ++
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPY--------------LDQYFYSHIGHHLKNI 484
Query: 108 A----VSLLKPIFKDI----------LSAWNP-------LEDARKPISLFQEWKSILE-- 144
++L + +F D +AWN L+ + + E
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 145 ----IEQVHSLSTISSTDPYQRIVWDALMP 170
++ + + Y ++ ALM
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMA 574
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.005
Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 51/182 (28%)
Query: 204 VANILQQ-------EILPKILAEVEDWNPLTDTVPIHSWVLPWVPLLGHHFSTAI----- 251
V+++++ ++L L E E+ L IH+ LL + +T +
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFEN-CYLEGN-DIHALA---AKLLQENDTTLVKTKEL 122
Query: 252 ---YPTIRHKLSAALVNWHPS-------DYSARLLILPWTNVFS-RGETDAFL--LQNIV 298
Y T R S + +A+L+ +F +G TD + L+++
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-----IFGGQGNTDDYFEELRDLY 177
Query: 299 PKLHIALQEFVINPQQQHLDNWNWVMEWSELLSSQTMASILSASFFPKWLQVLSMWLNIN 358
H+ + + I + L SEL+ + A F + L +L WL N
Sbjct: 178 QTYHVLVGDL-IKFSAETL---------SELIRTTLDAE----KVFTQGLNILE-WLE-N 221
Query: 359 PN 360
P+
Sbjct: 222 PS 223
Score = 34.3 bits (78), Expect = 0.077
Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 27/81 (33%)
Query: 226 LTDTVPIHSWVLPWVPLLGHHFSTAIYPTIRHKLSAALVNWHPSDYSARLLILPWTNVFS 285
L P HS LL I L V+++ D + +P V+
Sbjct: 421 LPVASPFHS------HLL-----VPASDLINKDLVKNNVSFNAKD-----IQIP---VYD 461
Query: 286 -------RGETDAFLLQNIVP 299
R + + IV
Sbjct: 462 TFDGSDLR-VLSGSISERIVD 481
Score = 30.8 bits (69), Expect = 1.1
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 34/89 (38%)
Query: 248 STAIYPTIRHKLSAALVNWHPSD----------YSARLL-----ILPWTN----VFSRGE 288
A + ++ S L+ P+D Y+A L ++ + VF RG
Sbjct: 1740 EKAAFEDLK---SKGLI---PADATFAGHSLGEYAA--LASLADVMSIESLVEVVFYRGM 1791
Query: 289 TDAFLLQNIVPKLHIALQEFV---INPQQ 314
+Q VP+ + + INP +
Sbjct: 1792 ----TMQVAVPRDELGRSNYGMIAINPGR 1816
Score = 28.9 bits (64), Expect = 3.4
Identities = 33/287 (11%), Positives = 71/287 (24%), Gaps = 116/287 (40%)
Query: 2 ASILSASFFPKWLQVLSM---WLNINPNYDQVANW--YQGWKSLFTENLLQE--PIIKEH 54
+++A ++ W + + + + G + E P +
Sbjct: 275 QGLVTAV-------AIAETDSWESFFVSVRKAITVLFFIGVRC-------YEAYP----N 316
Query: 55 FRSALDMMSRSVAGGGDTLPPPPPPPPPKEPSP-------SSSKHENHFAEYCMY----- 102
++ S+ PSP + + +++ + +
Sbjct: 317 TSLPPSILEDSLENNEGV------------PSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 103 --------------------DLSSLAVSLLKPIFKDILSAWNPLEDARKPISLFQEWKSI 142
L L ++L K A + L+ +R P F E K
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRK------AKAPSGLDQSRIP---FSERKLK 415
Query: 143 LEIEQVHSLSTISSTDPY---------QRIVWDALMPCFRIAASTWNCKKQCEPMLRLVE 193
+ ++S P+ I D + A
Sbjct: 416 F----SNRFLPVAS--PFHSHLLVPASDLINKDLVKNNVSFNAKDIQI------------ 457
Query: 194 AWKPLLPTW-------MVANILQQEILPKILAEVEDWNPLTDTVPIH 233
P+ T+ + +I + I+ I+ W T H
Sbjct: 458 ---PVYDTFDGSDLRVLSGSISE-RIVDCIIRLPVKWETTTQFKATH 500
>1mb1_A MBP1, MLU1-box binding protein; transcription regulation,
cell-cycle, transcription factor; 2.10A {Saccharomyces
cerevisiae} SCOP: d.34.1.1 PDB: 1l3g_A
Length = 130
Score = 29.1 bits (65), Expect = 1.2
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 74 PPPPPPPPPKEPSPSSSKHENH 95
PPP PK S H +H
Sbjct: 107 GSASPPPAPKHHHASKVDHHHH 128
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription,
simocyclinone regulator, TETR-family; 1.95A
{Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Length = 267
Score = 29.5 bits (66), Expect = 1.6
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 53 EHFRSALDMMSRSVAGGGDTLPPPPPPPPPKEPSPSSSKHENH 95
+ FRS L+ + S+ D L PP + P+ + H +H
Sbjct: 224 QRFRSGLERLLDSIGASLDRLSPPGRSAASERPALALEHHHHH 266
>1evs_A Oncostatin M; 4-helix bundle, GP130 binding cytokine; 2.20A {Homo
sapiens} SCOP: a.26.1.1
Length = 187
Score = 28.7 bits (63), Expect = 2.8
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 55 FRSALDMMSRSVAGGGDTLPPPPPPPPPKEPSPSSSKH 92
R+ + M++ + P + P+P+ +
Sbjct: 121 LRNNIYCMAQLLDNSDTAEPTKAGRGASQPPTPTPASD 158
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 28.1 bits (62), Expect = 3.7
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 68 GGGDTLPPPPPP--PPPKEPSPSSSKHENH 95
GGD P P P PPP P+ + H +H
Sbjct: 200 PGGDRFPGPAGPGGPPPPFPAGQTHHHHHH 229
>2v0f_A Chromodomain-helicase-DNA-binding protein 7; nucleotide-binding,
chromatin regulator, charge syndrome, phosphorylation,
disease mutation; NMR {Homo sapiens} SCOP: d.76.2.1
Length = 87
Score = 26.7 bits (58), Expect = 4.4
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 5 LSASFFPKWLQVLSMWLNINPNYDQVANWYQGWK-------SLFTENLLQEPIIKEH 54
+ + P ++ L WL NP + +W K S+F LL P+++
Sbjct: 30 MGGAMAPP-MKDLPRWLEENPEFAVAPDWTDIVKQSGFVPESMFDR-LLTGPVVRGE 84
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM
glucanase, carbohydrate metabolism, cellulose
degradation, glycosidase; HET: BTB; 2.10A {Clostridium
cellulovorans}
Length = 515
Score = 28.3 bits (62), Expect = 5.5
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 67 AGGGDTLPPPPPPPPPKEPSPSSSKHENH 95
G+ P P P S + H +H
Sbjct: 486 VKKGELEGKPIPNPLLGLDSTRTGHHHHH 514
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION,
membrane protein; HET: ATP; 2.10A {Rattus norvegicus}
SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 27.9 bits (61), Expect = 6.0
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 44 NLLQEPIIKEHFRSALDMMSRSVAGGGDTLPPPPPPPPPKEPSPSSS 90
N L+ + +F + L + PPPP P S++
Sbjct: 3 NYLRRRLSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAA 49
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein,
hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Length = 138
Score = 26.9 bits (59), Expect = 6.9
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 74 PPPPPPPPPKEPSPSSS 90
PP PPP P PS S
Sbjct: 122 PPSSVMPPPVMPPPSPS 138
Score = 26.9 bits (59), Expect = 7.0
Identities = 8/25 (32%), Positives = 8/25 (32%)
Query: 66 VAGGGDTLPPPPPPPPPKEPSPSSS 90
VA PPP PP P
Sbjct: 107 VAANATVSMPPPSSSPPSSVMPPPV 131
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 27.8 bits (61), Expect = 7.0
Identities = 2/31 (6%), Positives = 8/31 (25%)
Query: 65 SVAGGGDTLPPPPPPPPPKEPSPSSSKHENH 95
+ + + ++ H +H
Sbjct: 480 NTYFPHNDDAKTGITLSGNGVAGTNHHHHHH 510
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer,
oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Length = 689
Score = 27.6 bits (61), Expect = 7.4
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
Query: 68 GGGDTLPPPPPPPPPKEPSPSSSKHENH------FAEYCM 101
GG L P P P +P S+ + + YC
Sbjct: 568 GGTAKLQEPAPRPDTPKPPALSNDTASIEAGAKLYDGYCS 607
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 25.5 bits (56), Expect = 9.1
Identities = 9/37 (24%), Positives = 10/37 (27%), Gaps = 4/37 (10%)
Query: 71 DTLPPPPPPPPPKEPSPSSSKHENHFAEY----CMYD 103
PPP P P S H E +D
Sbjct: 3 KERPPPVPNPDYNSLKKGSLVKNLHMTEEVIVIAKWD 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.446
Gapped
Lambda K H
0.267 0.0489 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,214,396
Number of extensions: 357689
Number of successful extensions: 1948
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1903
Number of HSP's successfully gapped: 41
Length of query: 381
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 286
Effective length of database: 4,049,298
Effective search space: 1158099228
Effective search space used: 1158099228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.7 bits)