RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10518
         (381 letters)



>d1w36c3 c.52.1.25 (C:818-1121) Exodeoxyribonuclease V beta chain
           (RecC), C-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 304

 Score = 28.1 bits (62), Expect = 2.0
 Identities = 10/63 (15%), Positives = 18/63 (28%)

Query: 218 AEVEDWNPLTDTVPIHSWVLPWVPLLGHHFSTAIYPTIRHKLSAALVNWHPSDYSARLLI 277
            + ++   L D V         + +        I   +       L+ W PS  S    +
Sbjct: 102 TQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLLSVAQGM 161

Query: 278 LPW 280
             W
Sbjct: 162 QLW 164


>d2fsua1 c.67.2.1 (A:12-194) Phosphonate metabolism protein PhnH
          {Escherichia coli [TaxId: 562]}
          Length = 183

 Score = 26.7 bits (59), Expect = 3.4
 Identities = 8/28 (28%), Positives = 8/28 (28%), Gaps = 2/28 (7%)

Query: 55 FRSALDMMSRSVAGGGDTLPPPPPPPPP 82
          FR  L  MS    G    L        P
Sbjct: 7  FRRLLKAMSE--PGVIVALHQLKRGWQP 32


>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 111

 Score = 25.9 bits (57), Expect = 3.5
 Identities = 6/26 (23%), Positives = 9/26 (34%)

Query: 69 GGDTLPPPPPPPPPKEPSPSSSKHEN 94
           G +  P  P  P    + +  KH  
Sbjct: 3  SGSSGAPAEPAAPKSGEAETPPKHPG 28


>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding
          protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 87

 Score = 25.2 bits (55), Expect = 4.5
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 5  LSASFFPKWLQVLSMWLNINPNYDQVANWYQGWKSLF--TEN----LLQEPIIKE 53
          +  +  P  ++ L  WL  NP +    +W    K      E+    LL  P+++ 
Sbjct: 30 MGGAMAPP-MKDLPRWLEENPEFAVAPDWTDIVKQSGFVPESMFDRLLTGPVVRG 83


>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding
          protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 24.0 bits (52), Expect = 7.1
 Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 4  ILSASFFPKWLQVLSMWLNINPNYDQVANWYQ 35
          +L     P+    L MWL  +P +     +  
Sbjct: 19 LLVGEDAPR-RAELEMWLQGHPEFAVDPRFLA 49



 Score = 24.0 bits (52), Expect = 7.1
 Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 338 ILSASFFPKWLQVLSMWLNINPNYDQVANWYQ 369
           +L     P+    L MWL  +P +     +  
Sbjct: 19  LLVGEDAPR-RAELEMWLQGHPEFAVDPRFLA 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.446 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,586,146
Number of extensions: 74656
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 22
Length of query: 381
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 294
Effective length of database: 1,213,086
Effective search space: 356647284
Effective search space used: 356647284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)