BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10521
(66 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2
OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3
Length = 2074
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAVYS 64
GK+ +L +G+L + N +D +S+RCR+++++T + S TRL I R + S
Sbjct: 183 GKFHLLPTGELLIHNLQESDESQSFRCRSMHRLTRQVVVSS-PTRLRINSHRGIIS 237
>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1
SV=2
Length = 2012
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 48
G ++++ S+G LY+ + DG +YRC T ++ TGE++ S
Sbjct: 170 GSRFLITSTGALYIKDVQNEDGLYNYRCITRHRYTGETRQS 210
>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus
GN=Dscam PE=1 SV=1
Length = 2013
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 48
G ++++ S+G LY+ + DG +YRC T ++ TGE++ S
Sbjct: 170 GSRFLITSTGALYIKDVQNEDGLYNYRCITRHRYTGETRQS 210
>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus
GN=Dscam PE=1 SV=1
Length = 2013
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 48
G ++++ S+G LY+ + DG +YRC T ++ TGE++ S
Sbjct: 170 GSRFLITSTGALYIKDVQNEDGLYNYRCITRHRYTGETRQS 210
>sp|Q90Z04|CDON_XENLA Cell adhesion molecule-related/down-regulated by oncogenes
OS=Xenopus laevis GN=cdon PE=2 SV=1
Length = 1249
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 10 KYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 56
KY++L SG+L++ N + D +YRC N +T + + S +LS+
Sbjct: 168 KYLILPSGNLHILNVSVED-RGTYRCAAYNPVTHDLKLSTSTLKLSV 213
>sp|Q32MD9|CDON_MOUSE Cell adhesion molecule-related/down-regulated by oncogenes OS=Mus
musculus GN=Cdon PE=1 SV=2
Length = 1250
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS-----VFQTRLSITGFRAVY 63
G Y++L SG+L V N + D SY+C N +T E + + +R S GF ++
Sbjct: 165 GNYIILPSGNLQVLNVSSKDK-GSYKCAAYNPVTSELKVEPTGRKLLVSRPSSNGFHILH 223
>sp|Q9BWV1|BOC_HUMAN Brother of CDO OS=Homo sapiens GN=BOC PE=1 SV=1
Length = 1114
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 56
G Y+++ SG+L + NA+ D Y+C N +T E + S RL +
Sbjct: 175 GNYLIMPSGNLQIVNASQED-EGMYKCAAYNPVTQEVKTSGSSDRLRV 221
>sp|Q4VA61|DSCL1_MOUSE Down syndrome cell adhesion molecule-like protein 1 homolog OS=Mus
musculus GN=Dscaml1 PE=1 SV=2
Length = 2053
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 10 KYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
++ + S G LY+ + D +YRC T +K +GE++ S RLS+T
Sbjct: 173 RFFITSHGGLYISDVQKEDALSTYRCITQHKYSGETRQS-NGARLSVT 219
>sp|O35158|CDON_RAT Cell adhesion molecule-related/down-regulated by oncogenes
OS=Rattus norvegicus GN=Cdon PE=1 SV=2
Length = 1256
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE 44
G Y++L SG+L + N + D SY+C N +T E
Sbjct: 165 GNYIILPSGNLQILNVSSKDK-GSYKCAAYNPVTSE 199
>sp|Q6AZB0|BOC_MOUSE Brother of CDO OS=Mus musculus GN=Boc PE=1 SV=2
Length = 1110
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 11 YVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 56
Y+++ SG+L + NA+ D Y+C N +T E + S RL +
Sbjct: 172 YLIMPSGNLQIVNASQED-EGMYKCAAYNPVTQEVKTSGSGDRLRV 216
>sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens
GN=DSCAML1 PE=1 SV=2
Length = 2053
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 10 KYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
++ + G LY+ + D +YRC T +K +GE++ S RLS+T
Sbjct: 173 RFFITYHGGLYISDVQKEDALSTYRCITKHKYSGETRQS-NGARLSVT 219
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,602,945
Number of Sequences: 539616
Number of extensions: 659681
Number of successful extensions: 1516
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1508
Number of HSP's gapped (non-prelim): 13
length of query: 66
length of database: 191,569,459
effective HSP length: 38
effective length of query: 28
effective length of database: 171,064,051
effective search space: 4789793428
effective search space used: 4789793428
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)