Query psy10521
Match_columns 66
No_of_seqs 96 out of 98
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 20:20:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05845 Ig2_L1-CAM_like Second 98.7 2.6E-08 5.6E-13 61.9 4.4 45 5-49 46-90 (95)
2 cd05726 Ig4_Robo Fhird immunog 98.5 3.9E-07 8.5E-12 53.7 5.8 50 7-61 37-86 (90)
3 cd05852 Ig5_Contactin-1 Fifth 98.5 1E-07 2.3E-12 55.3 3.1 34 7-41 29-62 (73)
4 cd05853 Ig6_Contactin-4 Sixth 98.4 3.6E-07 7.7E-12 55.4 4.5 48 7-59 33-84 (85)
5 cd05727 Ig2_Contactin-2-like S 98.4 3.8E-07 8.2E-12 56.8 3.8 40 9-49 52-91 (96)
6 cd05738 Ig2_RPTP_IIa_LAR_like 98.4 8.3E-07 1.8E-11 50.9 4.4 46 7-56 28-73 (74)
7 cd05734 Ig7_DSCAM Seventh immu 98.3 7.5E-07 1.6E-11 51.3 3.9 36 7-43 34-69 (79)
8 cd05723 Ig4_Neogenin Fourth im 98.3 2E-06 4.3E-11 48.9 5.3 33 8-41 28-60 (71)
9 cd04969 Ig5_Contactin_like Fif 98.3 8.9E-07 1.9E-11 50.3 3.0 35 7-42 29-63 (73)
10 cd04970 Ig6_Contactin_like Six 98.3 1.5E-06 3.3E-11 50.6 4.0 41 14-59 44-84 (85)
11 cd05854 Ig6_Contactin-2 Sixth 98.2 4.1E-06 9E-11 49.6 5.1 39 16-59 46-84 (85)
12 cd05746 Ig4_Peroxidasin Fourth 98.2 1.8E-06 3.8E-11 48.8 3.1 35 7-42 26-60 (69)
13 cd05745 Ig3_Peroxidasin Third 98.2 1.9E-06 4.1E-11 49.1 3.2 35 7-42 30-64 (74)
14 cd05725 Ig3_Robo Third immunog 98.1 3.7E-06 8.1E-11 47.1 3.2 34 8-42 26-59 (69)
15 cd05724 Ig2_Robo Second immuno 98.1 7.3E-06 1.6E-10 47.0 4.5 34 8-42 42-75 (86)
16 cd05892 Ig_Myotilin_C C-termin 98.1 9.3E-06 2E-10 47.5 4.7 36 8-45 28-67 (75)
17 cd05741 Ig_CEACAM_D1_like Firs 98.0 1.1E-05 2.4E-10 46.9 4.3 33 8-41 48-80 (92)
18 cd05866 Ig1_NCAM-2 First immun 98.0 9.1E-06 2E-10 49.3 4.1 39 7-47 43-84 (92)
19 cd05774 Ig_CEACAM_D1 First imm 98.0 8.8E-06 1.9E-10 50.9 4.0 34 7-41 60-93 (105)
20 KOG3513|consensus 98.0 1.2E-05 2.5E-10 66.7 5.2 49 6-59 468-516 (1051)
21 cd05735 Ig8_DSCAM Eight immuno 98.0 2.4E-05 5.1E-10 46.5 5.0 46 9-59 32-84 (88)
22 cd05765 Ig_3 Subgroup of the i 97.9 1.9E-05 4E-10 44.8 4.3 36 9-46 39-74 (81)
23 cd05865 Ig1_NCAM-1 First immun 97.9 3.7E-05 8E-10 46.8 5.3 41 8-49 47-91 (96)
24 cd05763 Ig_1 Subgroup of the i 97.9 4.6E-05 9.9E-10 43.2 5.3 44 8-56 30-74 (75)
25 cd05760 Ig2_PTK7 Second immuno 97.9 6.1E-05 1.3E-09 43.4 5.8 45 9-56 29-74 (77)
26 cd05757 Ig2_IL1R_like Second i 97.9 5.6E-05 1.2E-09 45.8 5.7 34 14-48 49-82 (92)
27 cd05744 Ig_Myotilin_C_like Imm 97.9 4.6E-05 9.9E-10 43.9 4.8 33 8-41 28-64 (75)
28 cd05893 Ig_Palladin_C C-termin 97.8 3.3E-05 7.2E-10 45.0 4.2 36 8-45 28-67 (75)
29 cd05736 Ig2_Follistatin_like S 97.8 6.7E-05 1.5E-09 42.5 5.0 45 9-58 30-75 (76)
30 cd05871 Ig_Semaphorin_classIII 97.8 5.8E-05 1.3E-09 45.4 4.9 46 8-58 45-90 (91)
31 cd05764 Ig_2 Subgroup of the i 97.8 3.2E-05 7E-10 43.5 3.6 34 7-41 30-63 (74)
32 cd07702 Ig2_VEGFR-1 Second imm 97.8 2.6E-05 5.7E-10 45.7 3.2 38 9-48 29-66 (72)
33 cd05870 Ig5_NCAM-2 Fifth immun 97.7 5.8E-05 1.3E-09 45.1 3.8 35 8-43 52-89 (98)
34 cd05730 Ig3_NCAM-1_like Third 97.7 0.00014 2.9E-09 42.8 5.2 33 9-42 49-82 (95)
35 cd04977 Ig1_NCAM-1_like First 97.7 9.8E-05 2.1E-09 44.0 4.6 35 9-44 45-83 (92)
36 cd05740 Ig_CEACAM_D4 Fourth im 97.7 9.1E-05 2E-09 44.4 4.4 44 9-56 46-90 (91)
37 cd04983 IgV_TCR_alpha_like Imm 97.6 0.00012 2.7E-09 43.7 4.5 49 7-57 55-109 (109)
38 cd05742 Ig1_VEGFR_like First i 97.6 7.1E-05 1.5E-09 43.4 3.2 27 16-43 48-74 (84)
39 cd05867 Ig4_L1-CAM_like Fourth 97.6 7.7E-05 1.7E-09 42.6 3.2 34 10-46 35-68 (76)
40 cd05732 Ig5_NCAM-1_like Fifth 97.6 0.00013 2.8E-09 42.7 4.2 36 8-44 50-88 (96)
41 PHA02785 IL-beta-binding prote 97.6 0.00014 3E-09 52.4 5.1 37 8-45 168-204 (326)
42 cd04976 Ig2_VEGFR Second immun 97.6 7.9E-05 1.7E-09 42.5 3.1 32 13-45 31-62 (71)
43 cd04979 Ig_Semaphorin_C Immuno 97.6 0.00016 3.4E-09 42.3 4.5 37 9-47 44-80 (89)
44 cd05743 Ig_Perlecan_D2_like Im 97.6 7.9E-05 1.7E-09 42.8 3.0 34 8-42 30-66 (78)
45 cd04968 Ig3_Contactin_like Thi 97.6 7.1E-05 1.5E-09 43.6 2.6 38 14-56 50-87 (88)
46 cd04984 IgV_L_lambda Immunoglo 97.5 0.00016 3.6E-09 43.0 4.2 45 8-56 51-98 (98)
47 cd05722 Ig1_Neogenin First imm 97.5 0.00028 6E-09 41.7 5.1 45 9-56 46-95 (95)
48 cd05751 Ig1_LILRB1_like First 97.5 7E-05 1.5E-09 44.6 2.3 40 16-57 52-91 (91)
49 cd05758 Ig5_KIRREL3-like Fifth 97.5 0.00013 2.9E-09 43.5 3.6 35 8-42 48-89 (98)
50 cd05895 Ig_Pro_neuregulin-1 Im 97.5 0.0001 2.2E-09 41.9 2.9 28 16-45 43-70 (76)
51 cd05775 Ig_SLAM-CD84_like_N N- 97.5 0.00021 4.6E-09 43.1 4.4 36 9-46 52-88 (97)
52 cd05869 Ig5_NCAM-1 Fifth immun 97.5 0.00013 2.9E-09 43.4 3.5 35 8-43 51-88 (97)
53 cd05876 Ig3_L1-CAM Third immun 97.5 0.00011 2.5E-09 41.6 3.0 29 13-42 32-60 (71)
54 cd05747 Ig5_Titin_like M5, fif 97.5 0.00021 4.5E-09 42.1 3.9 33 8-41 47-82 (92)
55 smart00408 IGc2 Immunoglobulin 97.5 0.00023 4.9E-09 36.8 3.6 28 13-41 35-62 (63)
56 cd05862 Ig1_VEGFR First immuno 97.5 0.00025 5.5E-09 42.0 4.2 38 16-58 49-86 (86)
57 cd04978 Ig4_L1-NrCAM_like Four 97.4 0.00032 6.9E-09 39.3 4.3 33 11-45 35-67 (76)
58 cd00099 IgV Immunoglobulin var 97.4 0.00019 4E-09 42.3 3.4 47 8-56 53-105 (105)
59 PF07686 V-set: Immunoglobulin 97.4 0.0002 4.4E-09 41.7 3.5 46 7-56 64-114 (114)
60 cd04975 Ig4_SCFR_like Fourth i 97.4 0.00048 1E-08 42.4 5.2 25 17-42 65-89 (101)
61 cd05728 Ig4_Contactin-2-like F 97.4 0.00021 4.7E-09 41.7 3.4 33 8-42 43-75 (85)
62 cd04971 Ig_TrKABC_d5 Fifth dom 97.4 0.00011 2.4E-09 43.4 2.2 26 16-42 45-70 (81)
63 cd04974 Ig3_FGFR Third immunog 97.4 0.00016 3.4E-09 42.8 2.7 25 17-42 55-79 (90)
64 cd05861 Ig1_PDGFR-alphabeta Fr 97.4 0.00037 8E-09 40.9 4.1 38 16-56 45-82 (84)
65 cd05868 Ig4_NrCAM Fourth immun 97.3 0.0006 1.3E-08 39.2 4.7 30 15-46 39-68 (76)
66 cd05873 Ig_Sema4D_like Immunog 97.3 0.00025 5.4E-09 43.1 3.1 30 9-40 41-70 (87)
67 cd04973 Ig1_FGFR First immunog 97.3 0.00033 7.2E-09 40.5 3.5 32 8-41 37-68 (79)
68 cd05882 Ig1_Necl-1 First (N-te 97.3 0.00038 8.2E-09 42.4 3.9 32 8-40 49-84 (95)
69 cd04967 Ig1_Contactin First Ig 97.3 0.00036 7.7E-09 41.0 3.6 29 13-42 54-83 (91)
70 cd05737 Ig_Myomesin_like_C C-t 97.3 0.00032 7E-09 41.4 3.4 34 8-42 45-82 (92)
71 cd05851 Ig3_Contactin-1 Third 97.3 0.00061 1.3E-08 40.2 4.6 37 15-56 51-87 (88)
72 cd05849 Ig1_Contactin-1 First 97.3 0.00041 9E-09 41.7 3.9 33 8-42 49-82 (93)
73 cd05850 Ig1_Contactin-2 First 97.3 0.00045 9.8E-09 41.2 3.9 31 10-42 52-83 (94)
74 cd05748 Ig_Titin_like Immunogl 97.3 0.00058 1.3E-08 38.4 4.2 35 7-42 27-64 (74)
75 cd05894 Ig_C5_MyBP-C C5 immuno 97.3 0.00041 8.9E-09 41.0 3.6 35 8-43 40-77 (86)
76 cd05864 Ig2_VEGFR-2 Second imm 97.3 0.00023 5E-09 41.1 2.4 29 15-44 32-60 (70)
77 KOG4221|consensus 97.3 0.00048 1E-08 58.4 5.1 49 5-57 181-229 (1381)
78 cd05848 Ig1_Contactin-5 First 97.2 0.0004 8.7E-09 41.6 3.3 27 14-41 55-82 (94)
79 cd05717 Ig1_Necl-1-3_like Firs 97.2 0.00064 1.4E-08 40.1 4.1 33 8-41 49-85 (95)
80 cd05731 Ig3_L1-CAM_like Third 97.2 0.00027 5.9E-09 39.0 2.3 27 15-42 34-60 (71)
81 cd07701 Ig1_Necl-3 First (N-te 97.2 0.00055 1.2E-08 41.3 3.7 32 7-39 48-83 (95)
82 cd05863 Ig2_VEGFR-3 Second imm 97.2 0.00029 6.2E-09 40.7 2.3 28 16-44 30-57 (67)
83 cd04980 IgV_L_kappa Immunoglob 97.2 0.0005 1.1E-08 41.4 3.4 44 9-56 60-106 (106)
84 cd05888 Ig1_Nectin-4_like Frst 97.2 0.00076 1.7E-08 40.8 4.1 29 16-45 63-91 (100)
85 cd05718 Ig1_PVR_like First imm 97.2 0.0014 3.1E-08 38.3 5.1 36 8-44 49-88 (98)
86 cd05875 Ig6_hNeurofascin_like 97.2 0.00087 1.9E-08 38.8 4.1 36 7-42 28-67 (77)
87 cd05762 Ig8_MLCK Eighth immuno 97.1 0.00058 1.2E-08 41.3 3.2 47 8-59 44-93 (98)
88 PF07679 I-set: Immunoglobulin 97.1 0.00042 9E-09 39.6 2.4 38 8-47 44-84 (90)
89 cd05733 Ig6_L1-CAM_like Sixth 97.1 0.0012 2.6E-08 37.9 4.3 34 8-42 29-67 (77)
90 cd05750 Ig_Pro_neuregulin Immu 97.1 0.00043 9.2E-09 38.6 2.3 26 16-42 42-67 (75)
91 cd05886 Ig1_Nectin-1_like Firs 97.1 0.0011 2.3E-08 40.9 4.2 36 8-44 50-89 (99)
92 cd05858 Ig3_FGFR-2 Third immun 97.1 0.00024 5.2E-09 41.8 1.1 25 17-42 55-79 (90)
93 cd07693 Ig1_Robo First immunog 97.1 0.0012 2.6E-08 37.9 4.1 45 8-56 50-99 (100)
94 cd05713 Ig_MOG_like Immunoglob 97.1 0.00064 1.4E-08 40.3 2.9 31 9-40 51-87 (100)
95 cd05887 Ig1_Nectin-3_like Firs 97.1 0.0012 2.6E-08 40.8 4.2 33 16-49 59-91 (96)
96 cd05899 IgV_TCR_beta Immunoglo 97.0 0.0011 2.5E-08 40.1 4.0 47 8-56 59-110 (110)
97 cd05712 Ig_Siglec_N Immunoglob 97.0 0.002 4.3E-08 39.9 5.0 32 8-40 66-102 (119)
98 cd05752 Ig1_FcgammaR_like Frst 97.0 0.0012 2.5E-08 38.8 3.5 31 8-40 38-68 (78)
99 cd05897 Ig2_IL1R2_like Second 97.0 0.0026 5.7E-08 39.2 5.1 29 16-45 54-82 (95)
100 cd05855 Ig_TrkB_d5 Fifth domai 97.0 0.00063 1.4E-08 40.6 2.2 26 16-42 43-68 (79)
101 cd05878 Ig_Aggrecan_like Immun 96.9 0.0015 3.2E-08 40.4 3.7 33 8-41 57-95 (110)
102 cd05756 Ig1_IL1R_like First im 96.9 0.0022 4.9E-08 38.7 4.4 30 15-46 58-87 (94)
103 cd05877 Ig_LP_like Immunoglobu 96.9 0.0015 3.2E-08 39.1 3.3 32 8-40 55-90 (106)
104 cd05714 Ig_CSPGs_LP Immunoglob 96.9 0.0012 2.5E-08 39.7 2.9 24 16-40 67-90 (106)
105 cd05856 Ig2_FGFRL1-like Second 96.8 0.00067 1.5E-08 38.0 1.7 25 16-41 47-71 (82)
106 cd04981 IgV_H Immunoglobulin ( 96.8 0.0019 4.1E-08 40.2 3.8 48 8-57 62-117 (117)
107 cd05872 Ig_Sema4B_like Immunog 96.8 0.0013 2.9E-08 39.9 2.9 32 6-39 37-68 (85)
108 cd05874 Ig6_NrCAM Sixth immuno 96.8 0.003 6.5E-08 36.5 4.2 34 8-41 29-66 (77)
109 cd05880 Ig_EVA1 Immunoglobulin 96.8 0.001 2.2E-08 41.4 2.3 26 16-42 78-103 (115)
110 cd05754 Ig3_Perlecan_like Thir 96.8 0.00075 1.6E-08 39.0 1.5 26 15-41 50-75 (85)
111 cd05879 Ig_P0 Immunoglobulin ( 96.8 0.0011 2.3E-08 42.0 2.2 27 16-43 79-105 (116)
112 cd05881 Ig1_Necl-2 First (N-te 96.8 0.0034 7.3E-08 38.7 4.4 32 7-39 48-83 (95)
113 cd05857 Ig2_FGFR Second immuno 96.8 0.0012 2.7E-08 37.7 2.3 25 16-41 50-74 (85)
114 smart00410 IG_like Immunoglobu 96.7 0.005 1.1E-07 33.0 4.6 35 8-43 39-76 (86)
115 smart00409 IG Immunoglobulin. 96.7 0.005 1.1E-07 33.0 4.6 35 8-43 39-76 (86)
116 cd05773 Ig8_hNephrin_like Eigh 96.7 0.0024 5.3E-08 39.2 3.7 38 17-59 69-107 (109)
117 PF00047 ig: Immunoglobulin do 96.7 0.0016 3.4E-08 35.3 2.4 18 19-37 47-64 (64)
118 cd04972 Ig_TrkABC_d4 Fourth do 96.7 0.0013 2.9E-08 38.5 2.2 27 15-42 54-80 (90)
119 cd05859 Ig4_PDGFR-alpha Fourth 96.7 0.0026 5.7E-08 38.9 3.5 26 17-44 65-90 (101)
120 cd05771 IgC_Tapasin_R Tapasin- 96.7 0.0017 3.7E-08 40.8 2.7 22 18-40 2-23 (139)
121 cd05900 Ig_Aggrecan Immunoglob 96.7 0.0034 7.4E-08 39.5 4.0 35 9-44 60-100 (112)
122 KOG3513|consensus 96.6 0.0038 8.3E-08 52.3 5.3 53 3-57 177-231 (1051)
123 smart00406 IGv Immunoglobulin 96.6 0.0013 2.8E-08 36.4 1.5 30 7-37 47-81 (81)
124 cd05898 Ig5_KIRREL3 Fifth immu 96.6 0.004 8.6E-08 38.6 3.8 36 8-43 48-90 (98)
125 cd05753 Ig2_FcgammaR_like Seco 96.5 0.0015 3.2E-08 38.4 1.7 25 16-41 47-71 (83)
126 cd04982 IgV_TCR_gamma Immunogl 96.5 0.0054 1.2E-07 37.2 4.2 47 8-56 63-116 (116)
127 PHA02826 IL-1 receptor-like pr 96.5 0.0056 1.2E-07 42.6 4.8 38 8-46 178-216 (227)
128 cd05715 Ig_P0-like Immunoglobu 96.4 0.0028 6.2E-08 38.9 2.4 23 17-40 80-102 (116)
129 cd07706 IgV_TCR_delta Immunogl 96.4 0.0072 1.6E-07 36.8 4.2 48 8-57 58-115 (116)
130 cd05891 Ig_M-protein_C C-termi 96.4 0.0077 1.7E-07 35.7 4.1 36 8-44 45-84 (92)
131 PHA02826 IL-1 receptor-like pr 96.4 0.0043 9.3E-08 43.2 3.4 26 15-41 96-121 (227)
132 cd05846 Ig1_MRC-OX-2_like Firs 96.3 0.0054 1.2E-07 36.5 3.3 28 16-44 60-87 (97)
133 cd07690 Ig1_CD4 First immunogl 96.3 0.0019 4E-08 39.6 1.2 21 19-40 67-87 (94)
134 cd05889 Ig1_DNAM-1_like First 96.2 0.007 1.5E-07 37.3 3.3 32 16-48 59-90 (96)
135 PF13927 Ig_3: Immunoglobulin 96.1 0.0059 1.3E-07 32.8 2.4 28 11-39 48-75 (75)
136 cd05729 Ig2_FGFR_like Second i 96.1 0.0066 1.4E-07 33.9 2.6 24 17-41 51-74 (85)
137 KOG4222|consensus 96.1 0.01 2.2E-07 50.5 4.6 48 9-60 179-226 (1281)
138 cd07700 IgV_CD8_beta Immunoglo 96.0 0.011 2.5E-07 35.8 3.5 45 8-56 58-107 (107)
139 cd05902 Ig_Neurocan Immunoglob 95.9 0.01 2.3E-07 37.2 3.1 33 8-41 57-95 (110)
140 cd05716 Ig_pIgR Immunoglobulin 95.8 0.011 2.5E-07 34.8 3.0 34 7-41 49-87 (98)
141 PHA02785 IL-beta-binding prote 95.7 0.012 2.5E-07 42.5 3.1 25 16-41 291-315 (326)
142 cd05901 Ig_Versican Immunoglob 95.7 0.013 2.9E-07 37.6 3.0 36 8-44 64-105 (117)
143 PF13895 Ig_2: Immunoglobulin 95.5 0.028 6E-07 30.7 3.7 24 18-42 46-69 (80)
144 PHA03376 BARF1; Provisional 95.3 0.057 1.2E-06 38.5 5.4 50 8-58 75-131 (221)
145 KOG4221|consensus 95.0 0.055 1.2E-06 46.5 5.3 48 9-61 283-330 (1381)
146 cd05739 Ig3_RPTP_IIa_LAR_like 94.9 0.038 8.2E-07 31.3 3.0 23 16-41 37-59 (69)
147 KOG4194|consensus 94.9 0.056 1.2E-06 44.3 4.9 52 8-64 659-712 (873)
148 cd05720 Ig_CD8_alpha Immunoglo 94.8 0.026 5.7E-07 34.2 2.4 31 8-39 57-90 (104)
149 PHA02633 hypothetical protein; 94.7 0.036 7.9E-07 32.7 2.6 25 15-40 16-40 (63)
150 cd00096 Ig Immunoglobulin doma 94.5 0.038 8.2E-07 27.5 2.1 28 13-41 39-66 (74)
151 PF07354 Sp38: Zona-pellucida- 94.0 0.08 1.7E-06 38.8 3.8 32 9-41 29-60 (271)
152 cd05711 Ig_FcalphaRI Immunoglo 93.6 0.091 2E-06 31.4 2.9 24 16-40 54-77 (94)
153 cd05896 Ig1_IL1RAPL-1_like Fir 93.5 0.1 2.2E-06 33.2 3.1 27 14-41 67-93 (104)
154 cd00098 IgC Immunoglobulin Con 92.3 0.15 3.3E-06 29.3 2.5 34 7-43 54-87 (95)
155 cd05759 Ig2_KIRREL3-like Secon 91.9 0.17 3.6E-06 28.8 2.3 26 18-44 47-72 (82)
156 cd05885 Ig2_Necl-4 Second immu 91.2 0.24 5.2E-06 29.7 2.6 29 15-44 41-69 (80)
157 cd05749 Ig2_Tyro3_like Second 89.9 0.32 6.9E-06 28.6 2.3 24 16-42 48-71 (81)
158 KOG4222|consensus 86.2 0.52 1.1E-05 40.6 2.2 35 5-40 364-398 (1281)
159 PHA02987 Ig domain OX-2-like p 86.0 1.4 3E-05 30.8 3.9 34 9-43 73-110 (189)
160 PF07654 C1-set: Immunoglobuli 85.8 1.6 3.6E-05 24.9 3.6 32 6-43 48-79 (83)
161 cd05761 Ig2_Necl-1-4_like Seco 85.5 1.2 2.7E-05 25.6 3.0 24 19-43 47-70 (82)
162 KOG4194|consensus 84.9 0.75 1.6E-05 38.0 2.4 40 15-58 572-611 (873)
163 smart00407 IGc1 Immunoglobulin 82.4 2.8 6E-05 23.7 3.5 22 19-41 50-71 (75)
164 cd05860 Ig4_SCFR Fourth immuno 80.5 1.7 3.7E-05 27.3 2.3 26 17-43 65-90 (101)
165 cd07705 Ig2_Necl-1 Second immu 78.1 5.5 0.00012 23.1 3.9 21 24-44 52-72 (83)
166 cd05883 Ig2_Necl-2 Second immu 77.2 2.5 5.3E-05 25.4 2.3 24 18-42 45-68 (82)
167 cd05884 Ig2_Necl-3 Second immu 74.9 6.5 0.00014 23.0 3.6 25 19-44 48-72 (83)
168 cd05771 IgC_Tapasin_R Tapasin- 74.8 5.4 0.00012 24.8 3.5 22 19-41 110-131 (139)
169 cd04986 IgC_CH2 CH2 domain (se 73.1 3.6 7.9E-05 25.5 2.3 34 5-41 56-89 (99)
170 cd07696 IgC_CH3 CH3 domain (th 71.9 4.4 9.6E-05 24.5 2.5 10 31-40 76-85 (96)
171 cd05847 IgC_CH2_IgE CH2 domain 71.5 4.7 0.0001 24.3 2.5 12 30-41 75-86 (94)
172 cd07699 IgC_L Immunoglobulin C 68.9 5.2 0.00011 24.1 2.3 31 8-41 59-89 (100)
173 cd07698 IgC_MHC_I_alpha3 Class 64.8 7.5 0.00016 22.7 2.4 19 22-41 65-83 (93)
174 cd05770 IgC_beta2m Class I maj 64.2 17 0.00037 21.9 4.0 16 24-40 67-82 (93)
175 PF08205 C2-set_2: CD80-like C 62.2 9.8 0.00021 21.5 2.5 23 22-44 65-87 (89)
176 PHA03282 envelope glycoprotein 58.2 31 0.00068 27.7 5.3 41 3-45 111-151 (540)
177 cd05721 IgV_CTLA-4 Immunoglobu 57.3 6.3 0.00014 25.4 1.2 20 17-37 74-93 (115)
178 cd05766 IgC_MHC_II_beta Class 55.4 23 0.0005 21.0 3.4 17 24-41 67-83 (94)
179 cd05769 IgC_TCR_beta T cell re 54.9 14 0.0003 23.3 2.5 34 9-44 62-95 (115)
180 PF05083 LST1: LST-1 protein; 51.0 16 0.00036 22.1 2.2 17 26-42 58-74 (74)
181 cd04985 IgC_CH1 CH1 domain (fi 50.7 20 0.00042 21.6 2.6 31 8-41 57-87 (95)
182 TIGR02171 Fb_sc_TIGR02171 Fibr 50.0 54 0.0012 28.0 5.7 55 1-56 353-415 (912)
183 cd05767 IgC_MHC_II_alpha Class 46.1 45 0.00097 20.0 3.7 11 30-40 73-83 (94)
184 KOG2278|consensus 45.8 20 0.00043 25.4 2.3 21 6-26 63-84 (207)
185 cd01255 PH_TIAM TIAM Pleckstri 45.4 38 0.00082 23.3 3.5 33 10-42 90-123 (160)
186 PF07202 Tcp10_C: T-complex pr 43.9 85 0.0019 21.5 5.2 53 8-63 119-174 (179)
187 cd07703 Ig2_Nectin-2_like Seco 42.1 17 0.00037 22.1 1.4 19 23-41 64-82 (95)
188 cd05755 Ig2_ICAM-1_like Second 41.8 18 0.00039 22.4 1.5 19 24-42 68-86 (100)
189 cd07697 IgC_TCR_gamma T cell r 40.6 24 0.00052 21.4 1.9 18 23-40 67-84 (96)
190 cd05768 IgC_CH4 CH4 domain (fo 39.9 30 0.00065 20.9 2.2 11 30-40 80-90 (102)
191 PF04296 DUF448: Protein of un 39.7 32 0.0007 20.1 2.3 29 10-38 18-46 (78)
192 cd05719 Ig2_PVR_like Second im 39.6 30 0.00064 20.8 2.2 22 23-44 64-85 (95)
193 PF01436 NHL: NHL repeat; Int 38.0 25 0.00055 16.6 1.4 11 13-23 9-19 (28)
194 PRK12700 flgH flagellar basal 37.5 21 0.00046 25.4 1.5 12 12-23 152-163 (230)
195 PRK12407 flgH flagellar basal 37.4 21 0.00047 25.2 1.4 12 12-23 142-153 (221)
196 cd05772 IgC_SIRP Signal-regula 36.7 29 0.00063 21.5 1.8 18 24-41 75-92 (111)
197 KOG3515|consensus 36.5 27 0.00059 29.0 2.1 34 7-41 447-481 (741)
198 PRK12701 flgH flagellar basal 35.8 24 0.00051 25.1 1.5 12 12-23 151-162 (230)
199 TIGR02227 sigpep_I_bact signal 35.8 1.2E+02 0.0027 19.6 6.6 55 1-58 30-93 (163)
200 PF08662 eIF2A: Eukaryotic tra 34.6 1.2E+02 0.0025 20.1 4.6 41 5-49 108-153 (194)
201 KOG3260|consensus 33.8 25 0.00055 25.1 1.3 23 16-42 108-130 (224)
202 COG2063 FlgH Flagellar basal b 33.5 27 0.00058 25.1 1.4 12 12-23 155-166 (230)
203 PF11465 Receptor_2B4: Natural 33.4 55 0.0012 21.1 2.7 36 9-46 62-98 (108)
204 PF09466 Yqai: Hypothetical pr 33.2 43 0.00093 20.1 2.1 19 5-23 34-52 (71)
205 PRK12697 flgH flagellar basal 33.1 28 0.00061 24.8 1.5 12 12-23 148-159 (226)
206 cd00279 YlxR Ylxr homologs; gr 32.6 63 0.0014 19.2 2.8 29 10-38 19-47 (79)
207 KOG4597|consensus 32.5 30 0.00064 27.9 1.6 31 9-40 249-279 (560)
208 PRK12788 flgH flagellar basal 32.4 29 0.00063 24.8 1.5 12 12-23 156-167 (234)
209 cd07689 Ig2_VCAM-1 Second immu 32.3 54 0.0012 20.6 2.5 23 20-42 65-87 (99)
210 PHA02914 Immunoglobulin-like d 31.9 36 0.00078 27.0 2.0 18 20-38 84-101 (500)
211 PRK00249 flgH flagellar basal 31.8 30 0.00065 24.4 1.4 12 12-23 144-155 (222)
212 PF02107 FlgH: Flagellar L-rin 31.2 31 0.00067 23.3 1.4 12 12-23 102-113 (179)
213 PRK12698 flgH flagellar basal 31.0 32 0.00069 24.3 1.5 12 12-23 145-156 (224)
214 PRK12699 flgH flagellar basal 30.9 32 0.00069 24.8 1.5 12 12-23 169-180 (246)
215 PF03498 CDtoxinA: Cytolethal 30.7 96 0.0021 20.6 3.7 29 9-43 85-115 (150)
216 PRK12696 flgH flagellar basal 30.6 32 0.0007 24.5 1.4 12 12-23 158-169 (236)
217 COG1471 RPS4A Ribosomal protei 29.6 2E+02 0.0043 21.0 5.3 51 8-59 95-151 (241)
218 PF04571 Lipin_N: lipin, N-ter 29.0 70 0.0015 20.6 2.7 31 16-48 25-55 (110)
219 KOG1417|consensus 28.5 50 0.0011 25.5 2.2 18 6-23 152-170 (446)
220 PRK10626 hypothetical protein; 28.5 42 0.0009 24.2 1.7 16 8-23 45-60 (239)
221 PF03460 NIR_SIR_ferr: Nitrite 28.4 42 0.0009 18.4 1.4 20 9-28 39-58 (69)
222 PF03287 Pox_C7_F8A: Poxvirus 27.4 2E+02 0.0043 19.5 4.7 49 10-63 6-55 (149)
223 cd07691 Ig_CD3_gamma_delta Imm 27.2 37 0.00081 20.2 1.1 18 22-39 37-54 (69)
224 COG5475 Uncharacterized small 27.1 72 0.0016 18.6 2.2 34 8-44 7-42 (60)
225 PF11101 DUF2884: Protein of u 24.7 62 0.0013 22.6 2.0 15 9-23 24-38 (229)
226 KOG1832|consensus 24.3 76 0.0016 28.1 2.7 30 7-36 1111-1142(1516)
227 PF11901 DUF3421: Protein of u 24.2 81 0.0018 19.8 2.3 14 27-40 6-19 (119)
228 cd00244 AlgLyase Alginate Lyas 24.0 19 0.00042 27.3 -0.7 34 13-48 8-42 (339)
229 PF00900 Ribosomal_S4e: Riboso 22.6 1.5E+02 0.0032 17.5 3.1 34 8-42 3-38 (77)
230 PHA03269 envelope glycoprotein 22.3 1.7E+02 0.0037 23.8 4.2 40 8-48 275-319 (566)
231 PHA02854 putative host range p 21.3 2.5E+02 0.0054 19.6 4.4 48 10-62 6-54 (178)
232 cd06896 PX_PI3K_C2_gamma The p 20.8 77 0.0017 20.2 1.7 26 16-41 11-36 (101)
233 KOG1460|consensus 20.4 60 0.0013 25.1 1.3 30 16-46 136-165 (407)
234 TIGR02754 sod_Ni_protease nick 20.2 1.5E+02 0.0032 16.9 2.8 15 1-15 8-22 (90)
No 1
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.70 E-value=2.6e-08 Score=61.92 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=39.6
Q ss_pred CccCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecc
Q psy10521 5 DFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASV 49 (66)
Q Consensus 5 ~~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~ 49 (66)
+..++|+.+.++|+|+|.||+.+|....|.|.+.|+.+++.++++
T Consensus 46 i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~~~~~~ 90 (95)
T cd05845 46 ITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLRTIVQKE 90 (95)
T ss_pred ccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccccceEecC
Confidence 345789999999999999999999743899999999999988776
No 2
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.52 E-value=3.9e-07 Score=53.74 Aligned_cols=50 Identities=28% Similarity=0.431 Sum_probs=40.3
Q ss_pred cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccc
Q psy10521 7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRA 61 (66)
Q Consensus 7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~ 61 (66)
..+||.+.++|.|.|.||+.+|. +.|.|.+.|.. |.... .+.|.|.+...
T Consensus 37 ~~~r~~v~~~~~L~I~~v~~~D~-G~Y~C~a~N~~-G~~~~---~~~l~V~~~~~ 86 (90)
T cd05726 37 SSSRFSVSQTGDLTITNVQRSDV-GYYICQTLNVA-GSILT---KAYLEVTDVIA 86 (90)
T ss_pred CCCeEEECCCCeEEEeeCChhhC-EEEEEEEEcCC-CceEE---EEEEEEeeccc
Confidence 46799999999999999999996 99999999976 44332 45888887543
No 3
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.51 E-value=1e-07 Score=55.30 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=31.2
Q ss_pred cCCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521 7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
.++||.++++|.|.|.||+.+|. +.|.|.+.|.+
T Consensus 29 ~~~r~~~~~~g~L~I~~v~~~D~-G~Y~C~A~N~~ 62 (73)
T cd05852 29 NNSRISIWDDGSLEILNITKLDE-GSYTCFAENNR 62 (73)
T ss_pred cCCCEEEcCCCEEEECcCChhHC-EEEEEEEECCC
Confidence 35799999999999999999996 99999999987
No 4
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.45 E-value=3.6e-07 Score=55.36 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=38.6
Q ss_pred cCCeEEE----eecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521 7 VGGKYVV----LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF 59 (66)
Q Consensus 7 ~~~ry~i----lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep 59 (66)
.+++|.+ ..+|.|.|+||+.+|. |.|.|.+.|.+-.. +. .+.|+|..|
T Consensus 33 ~~~~~~~~~~~~~~~~L~I~nv~~~ds-G~YtC~a~n~~~~~---~a-~a~L~V~~p 84 (85)
T cd05853 33 DGDHFERVGGQDSAGDLMIRSIQLKHA-GKYVCMVQTSVDKL---SA-AADLIVRGP 84 (85)
T ss_pred CCccEEEeccCCCCCcEEEecCCHHHC-EEEEEEEEcccCce---EE-EEEEEEecC
Confidence 3558877 3679999999999996 99999999998543 33 568988876
No 5
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.40 E-value=3.8e-07 Score=56.76 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=34.4
Q ss_pred CeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecc
Q psy10521 9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASV 49 (66)
Q Consensus 9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~ 49 (66)
.+++..++|+|+|.+|+.+|. +.|.|.+.|..+++.+.++
T Consensus 52 r~~~~~~~G~L~fs~v~~~D~-g~Y~C~A~n~~~~~~~~~~ 91 (96)
T cd05727 52 RRFVSQTNGNLYIAKVEASDR-GNYSCFVSSPSSTKSVFSK 91 (96)
T ss_pred CeEEeCCCCcEEEeecCHhhC-ceeEEEEEecccCCcccCC
Confidence 355555699999999999997 9999999999999977766
No 6
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.37 E-value=8.3e-07 Score=50.87 Aligned_cols=46 Identities=26% Similarity=0.383 Sum_probs=36.9
Q ss_pred cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521 7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 56 (66)
Q Consensus 7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v 56 (66)
.+++|.+.++|.|.|.+++.+|. +.|.|.+.|.+-..... .+.|.|
T Consensus 28 ~~~~~~~~~~g~L~i~~~~~~D~-G~Y~C~a~N~~G~~~s~---~a~l~v 73 (74)
T cd05738 28 SNGRIKQLRSGALQIENSEESDQ-GKYECVATNSAGTRYSA---PANLYV 73 (74)
T ss_pred CCCCEEEcCCcEEEECCCChhhC-EEEEEEEECCCCceEcc---cEEEEE
Confidence 45789999999999999999995 99999999997554322 446665
No 7
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.34 E-value=7.5e-07 Score=51.28 Aligned_cols=36 Identities=25% Similarity=0.531 Sum_probs=31.9
Q ss_pred cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccC
Q psy10521 7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG 43 (66)
Q Consensus 7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTg 43 (66)
..+|+.+.++|.|.|.+++.+|. +.|.|.+.|.+-.
T Consensus 34 ~~~r~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G~ 69 (79)
T cd05734 34 LAGRIQLLSNGSLLIKHVLEEDS-GYYLCKVSNDVGA 69 (79)
T ss_pred cCCCEEEecCCeEEECcCCcccC-EEEEEEEEeCCCC
Confidence 56789888999999999999995 9999999998643
No 8
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.32 E-value=2e-06 Score=48.90 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=29.8
Q ss_pred CCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
+.++.+...|.|.|.+++.+|. |.|.|.+.|.+
T Consensus 28 ~~~~~~~~~~~l~i~~v~~~D~-G~Y~C~A~N~~ 60 (71)
T cd05723 28 SDYFKIVKEHNLQVLGLVKSDE-GFYQCIAENDV 60 (71)
T ss_pred CCCEEEEecCCEEEEcCCcccC-EEEEEEEEcCC
Confidence 4578888999999999999996 99999999986
No 9
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.27 E-value=8.9e-07 Score=50.28 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=31.1
Q ss_pred cCCeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521 7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
.+.|+.+.++|.|.|.+|+.+|. +.|.|.+.|++-
T Consensus 29 ~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~N~~G 63 (73)
T cd04969 29 NSSRICIWPDGSLEILNVTKSDE-GKYTCFAENFFG 63 (73)
T ss_pred cCCCEEECCCCeEEEccCChhHC-EEEEEEEECCCC
Confidence 35688889999999999999996 899999999963
No 10
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.26 E-value=1.5e-06 Score=50.56 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=33.3
Q ss_pred eecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521 14 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF 59 (66)
Q Consensus 14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep 59 (66)
..+|.|.|.+|+.+|+ |.|.|.+.|.+ |.. +. .++|.|..|
T Consensus 44 ~~~~~L~I~~v~~~D~-G~Y~C~a~n~~-g~~--~~-~~~l~V~~p 84 (85)
T cd04970 44 DSNGDLMIRNAQLKHA-GKYTCTAQTVV-DSL--SA-SADLIVRGP 84 (85)
T ss_pred cccceEEEccCCHHhC-eeeEEEEecCC-CcE--EE-EEEEEEECC
Confidence 3578999999999996 99999999977 443 32 568998875
No 11
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.21 E-value=4.1e-06 Score=49.56 Aligned_cols=39 Identities=26% Similarity=0.470 Sum_probs=32.5
Q ss_pred cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF 59 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep 59 (66)
.|.|.|.||+.+|+ |.|.|.+.|.. |+... .+.|.|.+|
T Consensus 46 ~~~L~I~~v~~~D~-G~YtC~A~n~~-g~~~~---~~~L~V~~~ 84 (85)
T cd05854 46 IGDLVIVNAQLSHA-GTYTCTAQTVV-DSASA---SATLVVRGP 84 (85)
T ss_pred EeEEEEccCChhhC-eEEEEEEecCC-CCEEE---EEEEEEECC
Confidence 68999999999996 99999999988 65443 458888764
No 12
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.19 E-value=1.8e-06 Score=48.79 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=31.2
Q ss_pred cCCeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521 7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
.+++|.+.++|.|.|.+|+.+|. |.|.|.+.|.+=
T Consensus 26 ~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~G 60 (69)
T cd05746 26 ESGKFHISPEGYLAIRDVGVADQ-GRYECVARNTIG 60 (69)
T ss_pred CCCCEEECCCCEEEECcCChhhC-EEEEEEEECCCC
Confidence 35789898999999999999996 999999999873
No 13
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.19 E-value=1.9e-06 Score=49.14 Aligned_cols=35 Identities=34% Similarity=0.546 Sum_probs=30.6
Q ss_pred cCCeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521 7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
.+.++.+.++|.|.|.+|+.+|. +.|.|.+.|.+-
T Consensus 30 ~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~A~N~~G 64 (74)
T cd05745 30 VDRRHLVLSSGTLRISRVALHDQ-GQYECQAVNIVG 64 (74)
T ss_pred CCCCeEEccCCeEEEeeCCHHhC-EEEEEEEEeCCC
Confidence 34578888999999999999995 999999999863
No 14
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.09 E-value=3.7e-06 Score=47.11 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=30.3
Q ss_pred CCeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
.+++.+.+.+.|.|.+|+.+|. |.|.|.+.|.+-
T Consensus 26 ~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G 59 (69)
T cd05725 26 KGRAEILDDKSLKIRNVTAGDE-GSYTCEAENMVG 59 (69)
T ss_pred CCcEEEeeCCEEEECcCChhHC-EEEEEEEEcCCC
Confidence 4678888999999999999996 999999999864
No 15
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.09 E-value=7.3e-06 Score=46.97 Aligned_cols=34 Identities=21% Similarity=0.505 Sum_probs=29.9
Q ss_pred CCeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
+.++.+...|.|.|.+++.+|. +.|.|.+.|..-
T Consensus 42 ~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~G 75 (86)
T cd05724 42 NERVRIVDDGNLLIAEARKSDE-GTYKCVATNMVG 75 (86)
T ss_pred CCCEEEccCCEEEEeECCcccC-EEEEEEEEeccC
Confidence 4578888899999999999995 999999999763
No 16
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.08 E-value=9.3e-06 Score=47.49 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=29.2
Q ss_pred CCeEEEeec--c--cEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521 8 GGKYVVLSS--G--DLYVFNATPNDGYKSYRCRTVNKITGES 45 (66)
Q Consensus 8 ~~ry~ilps--G--eL~I~nv~~~D~~~~Y~C~~~~~lTge~ 45 (66)
++||.+..+ | .|.|.+++.+|+ |.|+|.+.|.. |+.
T Consensus 28 ~~r~~~~~~~~g~~~L~I~~~~~~D~-G~Y~C~A~N~~-G~~ 67 (75)
T cd05892 28 TDRISLYQDNSGRVTLLIKNVNKKDA-GWYTVSAVNEA-GVA 67 (75)
T ss_pred CCeEEEEEcCCCcEEEEECCCChhhC-EEEEEEEEcCc-CeE
Confidence 458888764 3 699999999996 99999999976 443
No 17
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.02 E-value=1.1e-05 Score=46.86 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=30.7
Q ss_pred CCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
.+|+.+..+|.|.|.|++.+|+ |.|.|++...-
T Consensus 48 ~~R~~~~~~~sL~I~~l~~~Ds-G~Y~c~v~~~~ 80 (92)
T cd05741 48 SGRETIYPNGSLLIQNLTKEDS-GTYTLQIISTN 80 (92)
T ss_pred CCeEEEcCCceEEEccCCchhc-EEEEEEEEcCC
Confidence 5799999999999999999996 99999999876
No 18
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.02 E-value=9.1e-06 Score=49.33 Aligned_cols=39 Identities=31% Similarity=0.598 Sum_probs=33.0
Q ss_pred cCCeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEe
Q psy10521 7 VGGKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQA 47 (66)
Q Consensus 7 ~~~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~ 47 (66)
.++|+.+..+| .|.|.+|+.+|. |.|+|.+.|. .|+...
T Consensus 43 ~~~r~~~~~~g~~~~L~I~~v~~~D~-G~Y~C~A~N~-~G~~~~ 84 (92)
T cd05866 43 SSQRVVVQKEGVRSRLTIYNANIEDA-GIYRCQATDA-KGQTQE 84 (92)
T ss_pred CCCCEEEEeCCCeeEEEEecCChHHC-EEEEEEEEcC-CCcEEE
Confidence 45688888888 799999999996 9999999999 566553
No 19
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.02 E-value=8.8e-06 Score=50.85 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=31.1
Q ss_pred cCCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521 7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
-.||..+.++|.|.|+||+.+|. |.|.|++.+.-
T Consensus 60 ~~gR~~~~~ngSL~I~~v~~~D~-G~Y~~~v~~~~ 93 (105)
T cd05774 60 YSGRETIYPNGSLLIQNVTQKDT-GFYTLQTITTN 93 (105)
T ss_pred cCCcEEEeCCCcEEEecCCcccC-EEEEEEEEeCC
Confidence 36899999999999999999996 99999998865
No 20
>KOG3513|consensus
Probab=97.98 E-value=1.2e-05 Score=66.75 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=39.6
Q ss_pred ccCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521 6 FVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF 59 (66)
Q Consensus 6 ~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep 59 (66)
-.+|||.++++|.|-|.|++.+|+ |.|.|.+.|++-.. .+ -++|+|+++
T Consensus 468 ~~~~r~~i~edGtL~I~n~t~~Da-G~YtC~A~N~~G~a---~~-~~~L~Vkd~ 516 (1051)
T KOG3513|consen 468 LQSGRIRILEDGTLEISNVTRSDA-GKYTCVAENKLGKA---ES-TGNLIVKDA 516 (1051)
T ss_pred ccCceEEECCCCcEEecccCcccC-cEEEEEEEcccCcc---ce-EEEEEEecC
Confidence 457899999999999999999997 99999999987432 22 456666654
No 21
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=97.96 E-value=2.4e-05 Score=46.46 Aligned_cols=46 Identities=20% Similarity=0.456 Sum_probs=35.1
Q ss_pred CeEEEee--c-----ccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521 9 GKYVVLS--S-----GDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF 59 (66)
Q Consensus 9 ~ry~ilp--s-----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep 59 (66)
+||.+.. . ..|.|.++..+|. |.|.|.+.|.+ |+... .++|.|.++
T Consensus 32 ~r~~~~~~~~~~~~~s~L~I~~~~~~D~-G~YtC~A~N~~-G~~~~---~~~L~V~~~ 84 (88)
T cd05735 32 SRYLVSTKEVGDEVISTLQILPTVREDS-GFFSCHAINSY-GEDRG---IIQLTVQEP 84 (88)
T ss_pred CcEEEEEecCCCcEEEEEEECCCCcccC-EEEEEEEEcCC-CcceE---EEEEEEeCC
Confidence 5887754 2 5699999999996 99999999998 44333 357888764
No 22
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.95 E-value=1.9e-05 Score=44.79 Aligned_cols=36 Identities=36% Similarity=0.613 Sum_probs=28.9
Q ss_pred CeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEE
Q psy10521 9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ 46 (66)
Q Consensus 9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~ 46 (66)
+++.+...+.|.|.+++.+|. +.|.|.+.|.. |+..
T Consensus 39 ~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~-G~~~ 74 (81)
T cd05765 39 GNVVVTNIGQLVIYNAQPQDA-GLYTCTARNSG-GLLR 74 (81)
T ss_pred CCEEEccccEEEEccCCcccC-EEEEEEEecCC-ceEE
Confidence 345566678999999999996 99999999976 4433
No 23
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=97.90 E-value=3.7e-05 Score=46.80 Aligned_cols=41 Identities=32% Similarity=0.535 Sum_probs=32.3
Q ss_pred CCeEEEeec----ccEEEeecCCCCCCcceeEEeeccccCcEEecc
Q psy10521 8 GGKYVVLSS----GDLYVFNATPNDGYKSYRCRTVNKITGESQASV 49 (66)
Q Consensus 8 ~~ry~ilps----GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~ 49 (66)
+.|+.+..+ +.|.|.+|+.+|. |.|+|.+.|..-|+...+.
T Consensus 47 ~~r~~v~~~~~~~~~L~I~~v~~~D~-G~YtC~A~N~~~g~~~~s~ 91 (96)
T cd05865 47 QQRISVVRNDDYSSTLTIYNANIDDA-GIYKCVVSNEDEGESEATV 91 (96)
T ss_pred CCeEEEEeCCCCceEEEEeccChhhC-EEEEEEEEcCCCCcEEEEE
Confidence 346666543 6799999999996 9999999999877766543
No 24
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.90 E-value=4.6e-05 Score=43.23 Aligned_cols=44 Identities=18% Similarity=0.407 Sum_probs=32.2
Q ss_pred CCeEEEee-cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521 8 GGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 56 (66)
Q Consensus 8 ~~ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v 56 (66)
..++.+.+ .+.|.|.+++.+|. +.|.|.+.|.. |+. +. .++|.|
T Consensus 30 ~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~A~N~~-G~~--~~-~~~l~V 74 (75)
T cd05763 30 ERRMHVMPEDDVFFIVDVKIEDT-GVYSCTAQNTA-GSI--SA-NATLTV 74 (75)
T ss_pred ccceEEecCCCEEEEeeCCcccC-EEEEEEEEcCC-CEE--Ee-eEEEEE
Confidence 34677765 57899999999995 99999999984 443 22 345554
No 25
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=97.89 E-value=6.1e-05 Score=43.38 Aligned_cols=45 Identities=36% Similarity=0.471 Sum_probs=31.6
Q ss_pred CeEEEee-cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521 9 GKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 56 (66)
Q Consensus 9 ~ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v 56 (66)
+++.+.. .+.|.|.+++.+|. |.|.|.+.|.+ |+...+. ...|.|
T Consensus 29 ~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~-G~~~s~~-~~~l~v 74 (77)
T cd05760 29 GNYSVSSKERTLTLRSAGPDDS-GLYYCCAHNAF-GSVCSSQ-NFTLSI 74 (77)
T ss_pred ccEEEeCCCCEEEEeeCCcccC-EEEEEEEEeCC-CeEeeCc-eEEEEE
Confidence 4555543 46899999999995 99999999976 4444333 334444
No 26
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=97.87 E-value=5.6e-05 Score=45.82 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=29.0
Q ss_pred eecccEEEeecCCCCCCcceeEEeeccccCcEEec
Q psy10521 14 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 48 (66)
Q Consensus 14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S 48 (66)
...+.|.|.+|+.+|+ |.|.|.+.|..-+....-
T Consensus 49 ~~~~~L~I~~v~~~Ds-G~YtC~~~n~~~~~~~~~ 82 (92)
T cd05757 49 VKGSKLLIQNVTEEDA-GNYTCKLTFTHNGKQYNV 82 (92)
T ss_pred ecCCEEEEeeCChhhC-EEEEEEEEecCCCEEEEE
Confidence 3789999999999997 999999999877765543
No 27
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=97.85 E-value=4.6e-05 Score=43.92 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=27.6
Q ss_pred CCeEEEeecc----cEEEeecCCCCCCcceeEEeeccc
Q psy10521 8 GGKYVVLSSG----DLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 8 ~~ry~ilpsG----eL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
..||.+..++ .|.|.+++.+|. |.|.|.+.|..
T Consensus 28 ~~r~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~ 64 (75)
T cd05744 28 TDRISLYQDNCGRICLLIQNANKEDA-GWYTVSAVNEA 64 (75)
T ss_pred CCcEEEEEcCCCeEEEEECCCCcccC-EEEEEEEEcCC
Confidence 3577776654 399999999996 99999999987
No 28
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=97.85 E-value=3.3e-05 Score=44.96 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=29.3
Q ss_pred CCeEEEeecc----cEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521 8 GGKYVVLSSG----DLYVFNATPNDGYKSYRCRTVNKITGES 45 (66)
Q Consensus 8 ~~ry~ilpsG----eL~I~nv~~~D~~~~Y~C~~~~~lTge~ 45 (66)
.+|+.+...+ .|.|.+|+.+|+ |.|.|.+.|.+ |+.
T Consensus 28 ~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~A~N~~-G~~ 67 (75)
T cd05893 28 TDRVSMHQDNCGYICLLIQGATKEDA-GWYTVSAKNEA-GIV 67 (75)
T ss_pred CCeEEEEEcCCCEEEEEECCCCHHHC-EEEEEEEEcCC-CEE
Confidence 4678886654 599999999996 99999999986 543
No 29
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=97.81 E-value=6.7e-05 Score=42.51 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=34.0
Q ss_pred CeEEEeeccc-EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521 9 GKYVVLSSGD-LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG 58 (66)
Q Consensus 9 ~ry~ilpsGe-L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e 58 (66)
.++.+.++|. |.|.+++.+|. +.|.|.+.|.+-.. . . ...|.|.+
T Consensus 30 ~~~~~~~~~~~l~I~~~~~~D~-G~Y~C~a~N~~G~~-~--~-~~~l~V~~ 75 (76)
T cd05736 30 KQLTLIANGSELHISNVRYEDT-GAYTCIAKNEAGVD-E--D-ISSLFVED 75 (76)
T ss_pred ccEEEeCCCCEEEECcCCcccC-EEEEEEEEcCCCCc-c--e-EEEEEEEc
Confidence 5777777774 99999999995 99999999986432 2 2 44777754
No 30
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.80 E-value=5.8e-05 Score=45.43 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=34.6
Q ss_pred CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG 58 (66)
Q Consensus 8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e 58 (66)
++++.+ ..+.|.|.+++.+|. +.|.|.+.++.-++... ...|.|-+
T Consensus 45 ~~r~~~-~~~~L~I~~~~~~Ds-G~Y~C~a~~~~~~~~~~---~~~l~v~~ 90 (91)
T cd05871 45 EERLIH-TERGLLLRSLQRSDA-GVYTCTAVEHSFSQTLA---KYTLHVIE 90 (91)
T ss_pred cccEEE-ecCeEEEeeCChhHC-EEEEEEEEccCCeEEEE---EEEEEEec
Confidence 456765 456799999999997 99999999777676655 34666543
No 31
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.80 E-value=3.2e-05 Score=43.54 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=30.1
Q ss_pred cCCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521 7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
...++.+.+.|.|.|.+++.+|. +.|.|.+.|.+
T Consensus 30 ~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~a~N~~ 63 (74)
T cd05764 30 NSSRTLVYDNGTLDILITTVKDT-GSFTCIASNAA 63 (74)
T ss_pred CCCeEEEecCCEEEEEECChhhC-EEEEEEEECCC
Confidence 34678888999999999999995 99999999986
No 32
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.79 E-value=2.6e-05 Score=45.69 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=32.1
Q ss_pred CeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEec
Q psy10521 9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 48 (66)
Q Consensus 9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S 48 (66)
.+|.+ ..+.|.|.||+.+|+ |.|.|.+.|+..|+++.-
T Consensus 29 ~~~~~-~~~~L~I~~v~~~D~-G~YtC~a~~~~~~~~~~~ 66 (72)
T cd07702 29 SRYHV-DGYSLVIKDVTEEDA-GIYTILLGIKQYNLFKNL 66 (72)
T ss_pred cEEEe-CCCEEEECcCCHHHC-EEEEEEEEccccceEeeE
Confidence 56665 345899999999997 999999999999988754
No 33
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=97.71 E-value=5.8e-05 Score=45.07 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=29.2
Q ss_pred CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521 8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITG 43 (66)
Q Consensus 8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTg 43 (66)
++||.+.. .+.|.|.||+.+|. +.|.|.+.|.+-.
T Consensus 52 ~~r~~v~~~~~~~~L~I~~v~~~D~-G~Y~C~A~N~~G~ 89 (98)
T cd05870 52 DGRIEVKGQHGESSLHIKDVKLSDS-GRYDCEAASRIGG 89 (98)
T ss_pred CceEEEeecCCeeEEEEeeCCcCCC-EEEEEEEeccCCc
Confidence 46888764 35799999999996 9999999998754
No 34
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=97.69 E-value=0.00014 Score=42.84 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=27.6
Q ss_pred CeEEEeecc-cEEEeecCCCCCCcceeEEeecccc
Q psy10521 9 GKYVVLSSG-DLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 9 ~ry~ilpsG-eL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
.+|.+...| .|.|.+|+.+| .+.|.|.+.|.+-
T Consensus 49 ~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~a~N~~G 82 (95)
T cd05730 49 EKYSFNEDGSEMTILDVDKLD-EAEYTCIAENKAG 82 (95)
T ss_pred CEEEEeCCCCEEEECCCChhh-CEEEEEEEEcCCC
Confidence 567666655 59999999999 5999999999984
No 35
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=97.68 E-value=9.8e-05 Score=43.99 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=27.6
Q ss_pred CeEEEeecc----cEEEeecCCCCCCcceeEEeeccccCc
Q psy10521 9 GKYVVLSSG----DLYVFNATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 9 ~ry~ilpsG----eL~I~nv~~~D~~~~Y~C~~~~~lTge 44 (66)
+++.+..++ .|.|.+|+.+|. |.|+|.+.|.+-+.
T Consensus 45 ~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~A~N~~g~~ 83 (92)
T cd04977 45 QQISVVQNDDVRSTLTIYNANIEDA-GIYKCVATDAKGTE 83 (92)
T ss_pred CCEEEEeCCCCEEEEEEecCCcccC-EEEEEEEEcCCCCc
Confidence 455555444 799999999996 99999999986553
No 36
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=97.68 E-value=9.1e-05 Score=44.42 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=32.4
Q ss_pred CeEEEee-cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521 9 GKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 56 (66)
Q Consensus 9 ~ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v 56 (66)
+++.+.. .+.|.|.+|+.+|. |.|+|.+.|.+-.. .|. +..|.|
T Consensus 46 ~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G~~--~S~-~~~L~V 90 (91)
T cd05740 46 PRLQLSNDNRTLTFNNVTRSDT-GHYQCEASNEVSNM--TSD-PYILNV 90 (91)
T ss_pred CCEEEeCCCCEEEECcCChhhC-EEEEEEEEcCCCCE--Eee-eEEEEe
Confidence 4555554 46899999999996 99999999998432 233 556665
No 37
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.63 E-value=0.00012 Score=43.68 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=35.2
Q ss_pred cCCeEEEeec-----ccEEEeecCCCCCCcceeEEeecccc-CcEEecccceeEEEe
Q psy10521 7 VGGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKIT-GESQASVFQTRLSIT 57 (66)
Q Consensus 7 ~~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lT-ge~~~S~~~~~l~v~ 57 (66)
..+||.+..+ -.|.|.|++.+|. +.|.|++.+.-- ......+ +.+|.|.
T Consensus 55 ~~~r~~~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~~~~~~~~~~~~~g~-gt~l~V~ 109 (109)
T cd04983 55 EKGRFSATLDKSRKSSSLHISAAQLSDS-AVYFCALSESGGTGKLTFGK-GTRLTVE 109 (109)
T ss_pred cCCcEEEEEcccCCEEEEEECCCCHHHC-EEEEEEEecCCCCcceEECC-CEEEEEC
Confidence 3578877643 3799999999996 999999987642 2333343 7788763
No 38
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=97.62 E-value=7.1e-05 Score=43.35 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=24.1
Q ss_pred cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKITG 43 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTg 43 (66)
.+.|.|.+|+.+|. |.|.|.+.|.+..
T Consensus 48 ~s~L~I~~v~~~Ds-G~Y~C~a~n~~~~ 74 (84)
T cd05742 48 SSTLTIPNATLKDS-GTYTCAASSGTMD 74 (84)
T ss_pred EEEEEECCCChhhC-EEEEEEEccCCCc
Confidence 56899999999996 9999999999744
No 39
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=97.60 E-value=7.7e-05 Score=42.59 Aligned_cols=34 Identities=29% Similarity=0.542 Sum_probs=27.6
Q ss_pred eEEEeecccEEEeecCCCCCCcceeEEeeccccCcEE
Q psy10521 10 KYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ 46 (66)
Q Consensus 10 ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~ 46 (66)
++. ..+|.|.|.+++.+|. +.|.|.+.|.. |+..
T Consensus 35 ~~~-~~~~~L~I~~~~~~D~-G~Y~C~a~N~~-G~~~ 68 (76)
T cd05867 35 RRH-VSSGALILTDVQPSDT-AVYQCEARNRH-GNLL 68 (76)
T ss_pred eEE-eeCCEEEECCCChhhC-EEEEEEEECCC-CeEE
Confidence 444 4689999999999996 99999999974 5543
No 40
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=97.60 E-value=0.00013 Score=42.69 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=29.3
Q ss_pred CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521 8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge 44 (66)
.+++.+.. .+.|.|.+|+.+|. |.|.|++.|.+-..
T Consensus 50 ~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G~~ 88 (96)
T cd05732 50 DGRIVVRGHARVSSLTLKDVQLTDA-GRYDCEASNRIGGD 88 (96)
T ss_pred cceEEEeCCccEEEEEECcCCcCcC-EEeEEEEEeCCCCc
Confidence 45777754 35899999999996 99999999998653
No 41
>PHA02785 IL-beta-binding protein; Provisional
Probab=97.60 E-value=0.00014 Score=52.43 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=32.9
Q ss_pred CCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGES 45 (66)
Q Consensus 8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~ 45 (66)
++|+...++|.|.|.||+.+|+ |.|.|.+.|...+..
T Consensus 168 ~~r~~~~~~~~L~i~~v~~~d~-G~Y~C~~~n~~g~~~ 204 (326)
T PHA02785 168 NKRLKQRTPGIITIEDVRKNDA-GYYTCVLKYIYGDKT 204 (326)
T ss_pred CcceEecCCCeEEEeecChhhC-eEEEEEEEeccCCEE
Confidence 4688888999999999999996 999999999877754
No 42
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=97.59 E-value=7.9e-05 Score=42.51 Aligned_cols=32 Identities=22% Similarity=0.172 Sum_probs=27.3
Q ss_pred EeecccEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521 13 VLSSGDLYVFNATPNDGYKSYRCRTVNKITGES 45 (66)
Q Consensus 13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~ 45 (66)
....+.|.|.|++.+|+ |.|.|.+.|++-+..
T Consensus 31 ~~~~~~L~I~~v~~~D~-G~YtC~a~N~~g~~~ 62 (71)
T cd04976 31 KKSGHSLTIKDVTEEDA-GNYTVVLTNKQAKLE 62 (71)
T ss_pred EcCCCEEEECcCCHHHC-EEEEEEEEcCCccEE
Confidence 45678999999999996 999999999886643
No 43
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.59 E-value=0.00016 Score=42.28 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=28.4
Q ss_pred CeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEe
Q psy10521 9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQA 47 (66)
Q Consensus 9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~ 47 (66)
.++.+.+ +.|.|.+++.+|. |.|+|.+.+..=+++..
T Consensus 44 ~~~~~~~-~~L~I~~~~~~D~-G~Y~C~a~~~~~~~~~~ 80 (89)
T cd04979 44 ERLLVTE-DGLLIRSVSPADA-GVYTCQSVEHGFKQTLA 80 (89)
T ss_pred ceEEEcC-CCEEEccCCHHHC-EEEEEEEecCccceeEe
Confidence 4666654 5699999999996 99999999875444443
No 44
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=97.58 E-value=7.9e-05 Score=42.81 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=27.5
Q ss_pred CCeEEEeec---ccEEEeecCCCCCCcceeEEeecccc
Q psy10521 8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
+.|+.+... +.|.|.||+.+|. +.|.|.+.|.+-
T Consensus 30 ~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G 66 (78)
T cd05743 30 SARVSITSEGGYGTLTIRDVKESDQ-GAYTCEAINTRG 66 (78)
T ss_pred CCCEEEEECCCEEEEEECCCChHHC-EEEEEEEEecCC
Confidence 456766543 6799999999995 999999999764
No 45
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=97.55 E-value=7.1e-05 Score=43.60 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=29.3
Q ss_pred eecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521 14 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 56 (66)
Q Consensus 14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v 56 (66)
...|.|.|.+|+.+|. +.|.|.+.|.+-. ... .++|.|
T Consensus 50 ~~~~~L~i~~v~~~D~-G~Y~C~a~N~~G~-~~~---~~~l~V 87 (88)
T cd04968 50 MSGAVLKIPNIQFEDE-GTYECEAENIKGK-DTH---QGRIYV 87 (88)
T ss_pred EeCCEEEECCCCcccC-EEEEEEEEECCCc-EEE---EEEEEE
Confidence 5789999999999995 9999999998543 222 346655
No 46
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.55 E-value=0.00016 Score=42.99 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=34.6
Q ss_pred CCeEEEeeccc---EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521 8 GGKYVVLSSGD---LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 56 (66)
Q Consensus 8 ~~ry~ilpsGe---L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v 56 (66)
.+||.+..++. |.|.+++.+|. +.|.|.+.+. .+....+ +.+|+|
T Consensus 51 ~~rf~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~--~~~~fg~-gT~L~V 98 (98)
T cd04984 51 PDRFSGSKSGNTASLTISGAQTEDE-ADYYCQVWDS--NSYVFGG-GTKLTV 98 (98)
T ss_pred CCCEEEEccCCEEEEEECCCChhhC-EEEEEEEccC--CCCEECC-CEEEeC
Confidence 45888876555 99999999996 9999999864 4555565 777765
No 47
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.54 E-value=0.00028 Score=41.69 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=33.0
Q ss_pred CeEEEeecccEEEeec-----CCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521 9 GKYVVLSSGDLYVFNA-----TPNDGYKSYRCRTVNKITGESQASVFQTRLSI 56 (66)
Q Consensus 9 ~ry~ilpsGeL~I~nv-----~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v 56 (66)
.++.++++|.|.|.++ +.+| .+.|+|.+.|.--|+.. |. .++|+|
T Consensus 46 ~~~~~~~~~~l~i~~v~~~~~~~~D-~G~Y~C~a~N~~~G~~~-s~-~~~l~v 95 (95)
T cd05722 46 ERRQQLPNGSLLITSVVHSKHNKPD-EGFYQCVAQNDSLGSIV-SR-TARLTV 95 (95)
T ss_pred cceEEccCCeEEEeeeeccCCCCCc-CEEEEEEEECCccCcEE-Ee-eeEEeC
Confidence 4578889999999998 4677 49999999998345543 33 455543
No 48
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.52 E-value=7e-05 Score=44.56 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=30.7
Q ss_pred cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ 57 (66)
.++++|.+|+.+|+ |.|+|+..+..++-...|+ +..|.|+
T Consensus 52 ~~~f~i~~v~~~~~-G~Y~C~~~~~~~~~S~~Sd-~lel~Vt 91 (91)
T cd05751 52 KAKFFIPSMKREHA-GRYRCYYRSGVALWSEPSD-PLELVVT 91 (91)
T ss_pred eEEEEccCCChhHC-EEEEEEEECCCCccCCCCC-cEEEEeC
Confidence 56799999999996 9999999997644333444 7777774
No 49
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.52 E-value=0.00013 Score=43.48 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=28.9
Q ss_pred CCeEEEeec-------ccEEEeecCCCCCCcceeEEeecccc
Q psy10521 8 GGKYVVLSS-------GDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 8 ~~ry~ilps-------GeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
++||.+... +.|.|.+|+.+|..+.|.|.+.|.+-
T Consensus 48 ~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G 89 (98)
T cd05758 48 SGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG 89 (98)
T ss_pred CCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence 368888764 37999999998866999999999864
No 50
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.51 E-value=0.0001 Score=41.88 Aligned_cols=28 Identities=29% Similarity=0.577 Sum_probs=24.3
Q ss_pred cccEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKITGES 45 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~ 45 (66)
.+.|.|.+++.+|. |.|.|++.|.+ |+.
T Consensus 43 ~~~L~I~~~~~~Ds-G~Y~C~a~N~~-g~~ 70 (76)
T cd05895 43 SSELQISKASLADN-GEYKCMVSSKL-GND 70 (76)
T ss_pred EEEEEECcCCcccC-EEEEEEEEeCC-Cce
Confidence 46799999999996 99999999998 443
No 51
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.51 E-value=0.00021 Score=43.09 Aligned_cols=36 Identities=22% Similarity=0.184 Sum_probs=30.1
Q ss_pred CeEEEee-cccEEEeecCCCCCCcceeEEeeccccCcEE
Q psy10521 9 GKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQ 46 (66)
Q Consensus 9 ~ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~ 46 (66)
+|+.+.+ ++.|.|+|++.+|. |.|.|++.+.- |+..
T Consensus 52 ~R~~~~~~~~sL~I~~~~~~Ds-G~Y~c~v~~~~-~~~~ 88 (97)
T cd05775 52 ERVNFSQNDYSLQISNLKMEDA-GSYRAEINTKN-GVTI 88 (97)
T ss_pred eeEEecCCceeEEECCCchHHC-EEEEEEEEcCC-CCeE
Confidence 5787876 59999999999996 99999999876 4443
No 52
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=97.51 E-value=0.00013 Score=43.42 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=28.0
Q ss_pred CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521 8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITG 43 (66)
Q Consensus 8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTg 43 (66)
.+++.+.. .+.|.|.+|+.+|. |.|.|.+.|.+=.
T Consensus 51 ~~~~~v~~~~~~~~L~I~~v~~~D~-G~Y~C~A~N~~G~ 88 (97)
T cd05869 51 DGHIVVRSHARVSSLTLKYIQYTDA-GEYLCTASNTIGQ 88 (97)
T ss_pred CccEEEEcCccEEEEEEecCccCcC-EEEEEEEecCCCC
Confidence 35666643 36899999999996 9999999998654
No 53
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=97.51 E-value=0.00011 Score=41.56 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=25.7
Q ss_pred EeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521 13 VLSSGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
....|.|.|.+++.+|. |.|.|.+.|.+-
T Consensus 32 ~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G 60 (71)
T cd05876 32 LNNNKTLQLDNVLESDD-GEYVCTAENSEG 60 (71)
T ss_pred EcCCCEEEEcccCHHhC-EEEEEEEEcCCC
Confidence 45689999999999995 999999999984
No 54
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=97.47 E-value=0.00021 Score=42.10 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=28.1
Q ss_pred CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccc
Q psy10521 8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
+.||.+.+. +.|.|.+++.+|. |.|.|.+.|.+
T Consensus 47 ~~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~a~N~~ 82 (92)
T cd05747 47 SQRHQITSTEYKSTFEISKVQMSDE-GNYTVVVENSE 82 (92)
T ss_pred CCcEEEEEcCCeeEEEECCCCcccC-EeEEEEEEcCC
Confidence 457887664 5899999999996 99999999976
No 55
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.46 E-value=0.00023 Score=36.76 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.9
Q ss_pred EeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521 13 VLSSGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
....+.|.|.+++.+|. +.|+|++.|..
T Consensus 35 ~~~~~~L~i~~~~~~d~-G~Y~C~~~n~~ 62 (63)
T smart00408 35 SASGSTLTIKSVSLEDS-GEYTCVAENSA 62 (63)
T ss_pred ecCCcEEEEeeCCcccC-EEEEEEEecCC
Confidence 34578999999999996 99999998863
No 56
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=97.46 E-value=0.00025 Score=41.99 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=29.0
Q ss_pred cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG 58 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e 58 (66)
+..|.|.+++.+|. |.|.|.+.|.. | ..+. .++|+|.|
T Consensus 49 ~s~L~I~~~~~~Ds-G~Y~C~a~n~~-~--~~~~-~t~~~V~~ 86 (86)
T cd05862 49 SSTLTIENVTLSDL-GRYTCTASSGQ-M--IAKN-STIVIVHE 86 (86)
T ss_pred eeEEEEecCCcccC-EEEEEEEeecc-e--Eecc-cEEEEEeC
Confidence 56899999999996 99999998842 2 2232 56888764
No 57
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.44 E-value=0.00032 Score=39.28 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=27.0
Q ss_pred EEEeecccEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521 11 YVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGES 45 (66)
Q Consensus 11 y~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~ 45 (66)
......+.|.|.+|+.+|. +.|.|.+.|. -|+.
T Consensus 35 ~~~~~~~~L~i~~v~~~D~-G~Y~C~A~N~-~G~~ 67 (76)
T cd04978 35 RRRVDGGTLILSNVQPNDT-AVYQCNASNV-HGYL 67 (76)
T ss_pred eEEccCCEEEECCCChhhC-EEEEEEEEcc-CCeE
Confidence 3445689999999999995 9999999998 3443
No 58
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.44 E-value=0.00019 Score=42.30 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=34.1
Q ss_pred CCeEEEeecc-----cEEEeecCCCCCCcceeEEeecccc-CcEEecccceeEEE
Q psy10521 8 GGKYVVLSSG-----DLYVFNATPNDGYKSYRCRTVNKIT-GESQASVFQTRLSI 56 (66)
Q Consensus 8 ~~ry~ilpsG-----eL~I~nv~~~D~~~~Y~C~~~~~lT-ge~~~S~~~~~l~v 56 (66)
.+|+.+..++ .|.|.||+.+|. |.|.|.+.+... .+...++ +.+|.|
T Consensus 53 ~~r~~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~v~~~~~~~~~~~~~-gt~l~v 105 (105)
T cd00099 53 KGRFSGTRDSSKSSFTLTISSLQPEDS-AVYYCAVSLSGGTYKLYFGQ-GTRLTV 105 (105)
T ss_pred CCcEEEEEeccCCEEEEEECCCCHHHC-EEEEEEEecCCCceeeEECC-CEEEeC
Confidence 4677776443 799999999996 999999986653 2444454 667654
No 59
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.43 E-value=0.0002 Score=41.66 Aligned_cols=46 Identities=24% Similarity=0.500 Sum_probs=33.9
Q ss_pred cCCeEEEeeccc-----EEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521 7 VGGKYVVLSSGD-----LYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 56 (66)
Q Consensus 7 ~~~ry~ilpsGe-----L~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v 56 (66)
-.+|+.+..++. |.|.|++.+|. |.|.|++... ++..... ..+|.|
T Consensus 64 ~~~r~~~~~~~~~~~~sL~i~~l~~~Ds-G~Y~C~v~~~--~~~~~~~-~~~L~V 114 (114)
T PF07686_consen 64 YSGRFTFSGNGSQNNFSLTIKNLQPSDS-GTYFCQVSTS--NEQSFGN-GTKLTV 114 (114)
T ss_dssp ETTTEEEEEETTTTEEEEEESSESGGGE-EEEEEEEEES--SEEEEEE-EEEEEE
T ss_pred eeeeeeeeecccCCeEEEEECCCCcCcC-EEEEEEEEEC--CCCEECC-cEEEEC
Confidence 356778777777 99999999996 9999999988 3333333 445544
No 60
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=97.42 E-value=0.00048 Score=42.36 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=23.0
Q ss_pred ccEEEeecCCCCCCcceeEEeecccc
Q psy10521 17 GDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 17 GeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
+.|.|.+|..+|+ |.|+|.+.|.+-
T Consensus 65 ~~L~i~~v~~~D~-G~Ytc~A~N~~G 89 (101)
T cd04975 65 SELKLVRLKESEA-GTYTFLASNSDA 89 (101)
T ss_pred EEEEEeecCHhhC-eeEEEEEECCCc
Confidence 6799999999996 999999999974
No 61
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.41 E-value=0.00021 Score=41.68 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=27.3
Q ss_pred CCeEEEeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
++++.+ .+|.|.|.+++.+|. +.|+|.+.|.+-
T Consensus 43 ~~~~~~-~~~~L~i~~~~~~D~-G~Y~C~a~N~~G 75 (85)
T cd05728 43 ENRIEV-EAGDLRITKLSLSDS-GMYQCVAENKHG 75 (85)
T ss_pred CCeEEE-eCCEEEEeeCCHHHC-EEEEEEEECCCC
Confidence 345554 689999999999994 999999999764
No 62
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=97.41 E-value=0.00011 Score=43.37 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=23.4
Q ss_pred cccEEEeecCCCCCCcceeEEeecccc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
.|.|.|.+++.+|. |.|+|.|.|.+-
T Consensus 45 ~~~L~I~~~~~~D~-G~YtC~A~N~~G 70 (81)
T cd04971 45 HGCLQFDNPTHVNN-GNYTLVASNEYG 70 (81)
T ss_pred EEEEEECCCCcccC-eEEEEEEEeCCC
Confidence 56799999999996 999999999873
No 63
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=97.39 E-value=0.00016 Score=42.78 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.6
Q ss_pred ccEEEeecCCCCCCcceeEEeecccc
Q psy10521 17 GDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 17 GeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
+.|.|.||+.+|+ |.|.|.+.|.+=
T Consensus 55 ~~L~I~~v~~~D~-G~Y~C~A~N~~G 79 (90)
T cd04974 55 EVLYLRNVSFDDA-GEYTCLAGNSIG 79 (90)
T ss_pred ceEEEeccccccC-cEEEEEeecccC
Confidence 5799999999996 999999999864
No 64
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.37 E-value=0.00037 Score=40.95 Aligned_cols=38 Identities=16% Similarity=0.318 Sum_probs=28.8
Q ss_pred cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 56 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v 56 (66)
+..|.|.+++.+|. |.|.|.+.|...++.... ...|.|
T Consensus 45 ~s~L~I~~~~~~Ds-G~Y~C~a~n~~~~~~~~~--sv~i~V 82 (84)
T cd05861 45 RSTLTFPHATVEDS-GTYECAAHESTQDQKAFK--KVNITV 82 (84)
T ss_pred EEEEEECCCCcCCC-EEEEEEEEECccCcceeE--EEEEEE
Confidence 45799999999996 999999999877654422 335544
No 65
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=97.34 E-value=0.0006 Score=39.16 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=24.8
Q ss_pred ecccEEEeecCCCCCCcceeEEeeccccCcEE
Q psy10521 15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQ 46 (66)
Q Consensus 15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~ 46 (66)
..+.|.|.+|+.+|+ +.|.|.+.|.+ |+..
T Consensus 39 ~~~~l~i~~v~~~D~-G~Y~C~A~N~~-G~~~ 68 (76)
T cd05868 39 DGDTIIFSKVQERSS-AVYQCNASNEY-GYLL 68 (76)
T ss_pred cCCEEEECCCCHhhC-EEEEEEEEcCC-CEEE
Confidence 345899999999996 99999999987 4443
No 66
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.33 E-value=0.00025 Score=43.08 Aligned_cols=30 Identities=37% Similarity=0.730 Sum_probs=26.1
Q ss_pred CeEEEeecccEEEeecCCCCCCcceeEEeecc
Q psy10521 9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 40 (66)
Q Consensus 9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~ 40 (66)
+||.+ ..|.|.|.||+.+|+ |.|.|.+.+.
T Consensus 41 ~r~~~-~~~~L~I~nv~~~Ds-G~Y~C~a~e~ 70 (87)
T cd05873 41 AKYLL-YRDGLLIFNASEADA-GRYQCLSVEK 70 (87)
T ss_pred ceEEE-ECCcEEEeCCCHHHC-EEEEEEEEec
Confidence 57755 678999999999996 9999999976
No 67
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=97.33 E-value=0.00033 Score=40.45 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=26.5
Q ss_pred CCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
+.++.+. .+.|.|.+++.+|. |.|.|.+.|.+
T Consensus 37 ~~~~~~~-~~~L~I~~~~~~Ds-G~Y~C~a~n~~ 68 (79)
T cd04973 37 NNRTRIT-GEEVQIKDAVPRDS-GLYACVTSSPS 68 (79)
T ss_pred CceEEEe-CCEEEECCCChhhC-EEEEEEEeCCC
Confidence 4566653 56799999999996 99999999985
No 68
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=97.33 E-value=0.00038 Score=42.39 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=26.2
Q ss_pred CCeEEEee----cccEEEeecCCCCCCcceeEEeecc
Q psy10521 8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNK 40 (66)
Q Consensus 8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~ 40 (66)
++||.+.. .+.|.|.||+.+|+ |.|.|.+..-
T Consensus 49 ~~r~~~~~~~~~~~~L~I~nV~~~D~-G~YtC~~~t~ 84 (95)
T cd05882 49 DNRIQLVKSTPTELIISISNVQLSDE-GEYTCSIFTM 84 (95)
T ss_pred CCeEEEEeCCCceEEEEECCCCcccC-EEEEEEEEee
Confidence 46777652 46899999999996 9999999873
No 69
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.32 E-value=0.00036 Score=41.01 Aligned_cols=29 Identities=28% Similarity=0.529 Sum_probs=24.2
Q ss_pred EeecccEEEeecCC-CCCCcceeEEeecccc
Q psy10521 13 VLSSGDLYVFNATP-NDGYKSYRCRTVNKIT 42 (66)
Q Consensus 13 ilpsGeL~I~nv~~-~D~~~~Y~C~~~~~lT 42 (66)
...+|.|.|+++.. +|. +.|+|++.|.+-
T Consensus 54 ~~~~~~L~i~~~~~~~d~-G~Y~C~a~N~~G 83 (91)
T cd04967 54 SLVGGNLVISNPSKAKDA-GRYQCLASNIVG 83 (91)
T ss_pred EEECCEEEEecCCccCCC-EEEEEEEEcCCC
Confidence 34689999999985 785 999999999864
No 70
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=97.32 E-value=0.00032 Score=41.38 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=27.1
Q ss_pred CCeEEEeec-c---cEEEeecCCCCCCcceeEEeecccc
Q psy10521 8 GGKYVVLSS-G---DLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 8 ~~ry~ilps-G---eL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
+++|.+... | .|.|.+++.+|. |.|.|.+.|.+-
T Consensus 45 ~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G 82 (92)
T cd05737 45 SDHYNVKVEQGKYASLTIKGVSSEDS-GKYGIVVKNKYG 82 (92)
T ss_pred CCCEEEEEcCCCEEEEEEccCChhhC-EEEEEEEEECCC
Confidence 456666543 3 699999999996 999999999764
No 71
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=97.31 E-value=0.00061 Score=40.23 Aligned_cols=37 Identities=30% Similarity=0.529 Sum_probs=28.3
Q ss_pred ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521 15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 56 (66)
Q Consensus 15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v 56 (66)
..+.|.|.||+.+|. |.|.|.+.|.+-.. .. .++|.|
T Consensus 51 ~~~~L~I~~v~~~D~-G~Y~C~A~N~~G~~-~~---~~~l~V 87 (88)
T cd05851 51 SGAVLKIFNIQPEDE-GTYECEAENIKGKD-KH---QARVYV 87 (88)
T ss_pred CCCEEEECcCChhhC-EEEEEEEEcCCCce-EE---EEEEEE
Confidence 456899999999995 99999999997543 21 346655
No 72
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=97.31 E-value=0.00041 Score=41.68 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=26.6
Q ss_pred CCeEEEeecccEEEeecC-CCCCCcceeEEeecccc
Q psy10521 8 GGKYVVLSSGDLYVFNAT-PNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 8 ~~ry~ilpsGeL~I~nv~-~~D~~~~Y~C~~~~~lT 42 (66)
+++| .+.+|.|.|.++. .+|. |.|.|.+.|.+-
T Consensus 49 ~~~~-~~~~g~L~I~~~~~~~D~-G~Y~C~A~N~~G 82 (93)
T cd05849 49 NDRY-SMVGGNLVINNPDKYKDA-GRYVCIVSNIYG 82 (93)
T ss_pred CCeE-EEECCEEEECcCCcCCCC-EEEEEEEEeCcc
Confidence 3466 4578999999996 5785 999999999864
No 73
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=97.29 E-value=0.00045 Score=41.25 Aligned_cols=31 Identities=32% Similarity=0.658 Sum_probs=25.1
Q ss_pred eEEEeecccEEEeecC-CCCCCcceeEEeecccc
Q psy10521 10 KYVVLSSGDLYVFNAT-PNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 10 ry~ilpsGeL~I~nv~-~~D~~~~Y~C~~~~~lT 42 (66)
+|. +.+|.|.|.++. .+| .|.|+|.+.|.+-
T Consensus 52 ~~~-~~~g~L~I~~~~~~~D-~G~Y~C~A~N~~G 83 (94)
T cd05850 52 RYT-LVAGNLVINNPQKARD-AGSYQCLAINRCG 83 (94)
T ss_pred eEE-EECCeEEEccCCccCc-CEEEEEEEEcCcC
Confidence 444 468999999976 578 4999999999875
No 74
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=97.28 E-value=0.00058 Score=38.40 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=28.1
Q ss_pred cCCeEEEee---cccEEEeecCCCCCCcceeEEeecccc
Q psy10521 7 VGGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 7 ~~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
.++++.+.. .+.|.|.+++.+|. |.|.|.+.|.+-
T Consensus 27 ~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~G 64 (74)
T cd05748 27 LSGRVQIETTASSTSLVIKNAERSDS-GKYTLTLKNPAG 64 (74)
T ss_pred CCCeEEEEECCCeEEEEECCCCcCcC-EEEEEEEECCCc
Confidence 345677654 45799999999996 999999999863
No 75
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=97.28 E-value=0.00041 Score=40.99 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=28.4
Q ss_pred CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521 8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITG 43 (66)
Q Consensus 8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTg 43 (66)
++|+.+.. .+.|.|.+++.+|. |.|.|.+.|.+=.
T Consensus 40 ~~r~~~~~~~~~~~L~I~~~~~~D~-G~Y~c~a~N~~G~ 77 (86)
T cd05894 40 EGRVRVESYKDLSSFVIEGAEREDE-GVYTITVTNPVGE 77 (86)
T ss_pred CCeEEEEEcCCeEEEEECCCccCcC-EEEEEEEEeCCCc
Confidence 45777754 36799999999996 9999999998643
No 76
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.27 E-value=0.00023 Score=41.10 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=24.8
Q ss_pred ecccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521 15 SSGDLYVFNATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge 44 (66)
..+.|.|.++..+|. |.|.|.+.|.+-..
T Consensus 32 ~~~~L~I~~v~~~D~-G~YtC~a~N~~G~~ 60 (70)
T cd05864 32 RGVHLTIYEVTEKDA-GNYTVVLTNPITKE 60 (70)
T ss_pred cCCEEEECcCCHHHC-EEEEEEEEECCCce
Confidence 356899999999996 99999999998543
No 77
>KOG4221|consensus
Probab=97.27 E-value=0.00048 Score=58.41 Aligned_cols=49 Identities=24% Similarity=0.412 Sum_probs=38.4
Q ss_pred CccCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521 5 DFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57 (66)
Q Consensus 5 ~~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ 57 (66)
+.+++|+.++|+|.|.|.+++..|. +.|||.+.+.-...+ |+ -+.|.|.
T Consensus 181 l~~~~r~i~lpsG~L~I~~~qp~d~-g~yrc~vt~g~~~r~--S~-~a~ltv~ 229 (1381)
T KOG4221|consen 181 LPLDSRVIVLPSGALEISGLQPSDT-GEYRCVVTGGASQRT--SN-EAELTVL 229 (1381)
T ss_pred ccCCCcEEEcCCCcEEecccccCCC-ceEEEEEecCCcCCc--cc-eeEEEec
Confidence 3456799999999999999999996 999999987655544 44 4455554
No 78
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=97.24 E-value=0.0004 Score=41.56 Aligned_cols=27 Identities=33% Similarity=0.625 Sum_probs=23.4
Q ss_pred eecccEEEeecC-CCCCCcceeEEeeccc
Q psy10521 14 LSSGDLYVFNAT-PNDGYKSYRCRTVNKI 41 (66)
Q Consensus 14 lpsGeL~I~nv~-~~D~~~~Y~C~~~~~l 41 (66)
..+|.|.|.++. .+|. |.|+|.+.|.+
T Consensus 55 ~~~g~L~i~~~~~~~D~-G~Y~C~A~N~~ 82 (94)
T cd05848 55 LIDGNLIISNPSEVKDS-GRYQCLATNSI 82 (94)
T ss_pred eeCCeEEEccCCccCcC-EEEEEEEEcCC
Confidence 468999999986 5785 99999999987
No 79
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.23 E-value=0.00064 Score=40.12 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=26.9
Q ss_pred CCeEEEee----cccEEEeecCCCCCCcceeEEeeccc
Q psy10521 8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
++||.+.. ++.|.|.||+.+|. +.|.|++....
T Consensus 49 ~~r~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~ 85 (95)
T cd05717 49 DNRIQLVNFSANELSISISNVSLSDE-GRYTCSLYTMP 85 (95)
T ss_pred cCcEEEEcCCCCeeEEEEccCCcccC-EEEEEEEecCC
Confidence 46888742 35699999999996 99999998654
No 80
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=97.22 E-value=0.00027 Score=39.00 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.8
Q ss_pred ecccEEEeecCCCCCCcceeEEeecccc
Q psy10521 15 SSGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 15 psGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
..+.|.|.+|+.+|. |.|.|.+.|..-
T Consensus 34 ~~~~L~i~~v~~~D~-G~Y~C~a~N~~G 60 (71)
T cd05731 34 FNKTLKIDNVSEEDD-GEYRCTASNSLG 60 (71)
T ss_pred CCCEEEECCCCHHHC-EEEEEEEEeCCc
Confidence 467899999999995 999999999864
No 81
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.21 E-value=0.00055 Score=41.29 Aligned_cols=32 Identities=9% Similarity=0.242 Sum_probs=26.4
Q ss_pred cCCeEEEe----ecccEEEeecCCCCCCcceeEEeec
Q psy10521 7 VGGKYVVL----SSGDLYVFNATPNDGYKSYRCRTVN 39 (66)
Q Consensus 7 ~~~ry~il----psGeL~I~nv~~~D~~~~Y~C~~~~ 39 (66)
.++||.+. ..+.|.|.||+.+|+ |.|.|++..
T Consensus 48 ~~~r~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~~~t 83 (95)
T cd07701 48 RDNRIELVRASWHELSISISDVSLSDE-GQYTCSLFT 83 (95)
T ss_pred cCCCEEEEECCCCcEEEEECcCCcccC-EEEEEEeEe
Confidence 35788774 236799999999996 999999997
No 82
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=97.21 E-value=0.00029 Score=40.68 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=25.0
Q ss_pred cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge 44 (66)
.+.|.|.+|..+|+ |.|.|.+.|.+-+.
T Consensus 30 ~~~L~i~~v~~~D~-G~YtC~a~N~~g~~ 57 (67)
T cd05863 30 QHSLQIKDVTEASA-GTYTLVLWNSAAGL 57 (67)
T ss_pred cCEEEECCCCHHHC-EEEEEEEEECCccE
Confidence 56899999999996 99999999997754
No 83
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.19 E-value=0.0005 Score=41.40 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=31.9
Q ss_pred CeEEEeecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521 9 GKYVVLSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 56 (66)
Q Consensus 9 ~ry~ilpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v 56 (66)
+||.+..++ .|.|.|++.+|. +.|.|++.+- .+....+ +.+|.|
T Consensus 60 ~r~~~~~~~~~~~L~I~~~~~~Ds-g~Y~Ca~~~~--~~~~fg~-gT~L~v 106 (106)
T cd04980 60 SRFSGSGSGTDFTLTISRVEPEDA-AVYYCQQYGT--FPYTFGG-GTKLEI 106 (106)
T ss_pred CCEEEeccCCEEEEEECCCChHHC-EEEEEEEeCC--CCCEECC-CEEEeC
Confidence 577775543 499999999996 9999999753 3455554 666654
No 84
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.18 E-value=0.00076 Score=40.83 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=25.5
Q ss_pred cccEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKITGES 45 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~ 45 (66)
++.|.|+||+.+|. |.|.|.+.+.=-|..
T Consensus 63 ~~sL~I~nv~~sD~-GtY~C~v~~~p~g~~ 91 (100)
T cd05888 63 DGALILRNAVQADE-GKYKCRVITFPAGNF 91 (100)
T ss_pred ceEEEEecCccccc-eEEEEEEEeCCCCCe
Confidence 77899999999996 999999998767753
No 85
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.17 E-value=0.0014 Score=38.33 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=26.9
Q ss_pred CCeEEEee----cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521 8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge 44 (66)
.+|..+.. ++.|.|+||+.+|+ |.|.|++...-.|.
T Consensus 49 ~~R~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~v~~~~~g~ 88 (98)
T cd05718 49 EGRVSFLNSSLEDATISISNLRLEDE-GNYICEFATFPQGN 88 (98)
T ss_pred CceEEEeCCCCCceEEEEccCCcccC-EEEEEEEEeCCCCc
Confidence 45555443 57999999999997 99999987543343
No 86
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=97.15 E-value=0.00087 Score=38.82 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=28.0
Q ss_pred cCCeEEE-eecccEEEeecCC---CCCCcceeEEeecccc
Q psy10521 7 VGGKYVV-LSSGDLYVFNATP---NDGYKSYRCRTVNKIT 42 (66)
Q Consensus 7 ~~~ry~i-lpsGeL~I~nv~~---~D~~~~Y~C~~~~~lT 42 (66)
.++++.+ ..+|.|.|.+++. +|..+.|.|.+.|.+-
T Consensus 28 ~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G 67 (77)
T cd05875 28 KDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLG 67 (77)
T ss_pred CCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccc
Confidence 3567777 4789999999853 4445999999999975
No 87
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=97.12 E-value=0.00058 Score=41.32 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=35.2
Q ss_pred CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521 8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF 59 (66)
Q Consensus 8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep 59 (66)
+.++.+.. ...|.|.+++.+|. |.|.|.+.|.+=.... .+.|.|.+.
T Consensus 44 ~~~~~~~~~~~~s~L~I~~~~~~D~-G~Ytc~a~N~~G~~~~----~~~l~V~~~ 93 (98)
T cd05762 44 GEGIKIENTENSSKLTITEGQQEHC-GCYTLEVENKLGSRQA----QVNLTVVDK 93 (98)
T ss_pred CCcEEEEecCCeeEEEECCCChhhC-EEEEEEEEcCCCceeE----EEEEEEecC
Confidence 44666653 67799999999996 9999999998754322 347777663
No 88
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=97.11 E-value=0.00042 Score=39.64 Aligned_cols=38 Identities=32% Similarity=0.544 Sum_probs=29.8
Q ss_pred CCeEEEe---ecccEEEeecCCCCCCcceeEEeeccccCcEEe
Q psy10521 8 GGKYVVL---SSGDLYVFNATPNDGYKSYRCRTVNKITGESQA 47 (66)
Q Consensus 8 ~~ry~il---psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~ 47 (66)
+++|.+. ....|.|.+|+.+|+ |.|+|.+.|. .|+...
T Consensus 44 ~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~n~-~g~~~~ 84 (90)
T PF07679_consen 44 SQRYQIESDGGSSSLTIKNVTREDA-GTYTCVASNS-SGEATA 84 (90)
T ss_dssp SSSEEEEEETTEEEEEESSESGGGS-EEEEEEEEET-TEEEEE
T ss_pred eeeeeeecccceeEEccCCCChhhC-EEEEEEEEEC-CCEEEE
Confidence 4566664 367899999999996 9999999999 555443
No 89
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=97.11 E-value=0.0012 Score=37.88 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=26.6
Q ss_pred CCeEEE-eecccEEEeecCC----CCCCcceeEEeecccc
Q psy10521 8 GGKYVV-LSSGDLYVFNATP----NDGYKSYRCRTVNKIT 42 (66)
Q Consensus 8 ~~ry~i-lpsGeL~I~nv~~----~D~~~~Y~C~~~~~lT 42 (66)
+.++.+ .++|.|.|.+++. +| .+.|.|.+.|.+-
T Consensus 29 ~~~~~~~~~~g~L~i~~~~~~~~~~d-~G~Y~C~A~N~~G 67 (77)
T cd05733 29 DPRVTMKPDSGTLVIDNMNGGRAEDY-EGEYQCYASNELG 67 (77)
T ss_pred CCCEEEeCCCCEEEEeccCCCCCcCC-CEEEEEEEEcCCC
Confidence 345655 3589999999965 56 4999999999984
No 90
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=97.10 E-value=0.00043 Score=38.57 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.4
Q ss_pred cccEEEeecCCCCCCcceeEEeecccc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
.+.|.|.+++.+|. +.|.|.+.|.+-
T Consensus 42 ~~~L~I~~~~~~D~-G~Y~C~a~N~~G 67 (75)
T cd05750 42 NSELQINKAKLADS-GEYTCVVENILG 67 (75)
T ss_pred eEEEEEccCCcccC-eEEEEEEEEcCC
Confidence 57899999999996 999999999973
No 91
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.09 E-value=0.0011 Score=40.91 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=29.1
Q ss_pred CCeEEEee----cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521 8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge 44 (66)
.+|-.... ++.|.|+||+.+|+ |.|+|.+.+.=.|.
T Consensus 50 ~~Rv~f~~~~~~daSi~i~nl~~~D~-G~Y~C~v~t~P~g~ 89 (99)
T cd05886 50 RERVTFKNPSFEDGTISLSRLELEDE-GVYICEFATFPTGN 89 (99)
T ss_pred cCcEEEcCCCCCcceEEEcCCccccC-EEEEEEEEeCCCCC
Confidence 35665542 48999999999996 99999999977774
No 92
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=97.07 E-value=0.00024 Score=41.76 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=22.4
Q ss_pred ccEEEeecCCCCCCcceeEEeecccc
Q psy10521 17 GDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 17 GeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
+.|.|++|+.+|+ |.|.|.+.|.+=
T Consensus 55 ~~L~I~~v~~~D~-G~Y~C~A~N~~G 79 (90)
T cd05858 55 EVLYLRNVTFEDA-GEYTCLAGNSIG 79 (90)
T ss_pred eEEEEccCCHHHC-EEEEEEEEeCCC
Confidence 4699999999996 999999999874
No 93
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=97.07 E-value=0.0012 Score=37.95 Aligned_cols=45 Identities=29% Similarity=0.517 Sum_probs=31.0
Q ss_pred CCeEEEeecccEEEeec-----CCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521 8 GGKYVVLSSGDLYVFNA-----TPNDGYKSYRCRTVNKITGESQASVFQTRLSI 56 (66)
Q Consensus 8 ~~ry~ilpsGeL~I~nv-----~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v 56 (66)
..+..++++|.+.+..+ +.+|. +.|.|.+.|.+ |... |. .+.|.|
T Consensus 50 ~~~~~~~~~~~~~~~~i~~~~~~~~D~-G~Y~C~a~N~~-G~~~-s~-~~~l~v 99 (100)
T cd07693 50 RSHRIVLPSGSLFFLRVVHGRKGRSDE-GVYVCVAHNSL-GEAV-SR-NASLEV 99 (100)
T ss_pred CcceEEecCCcEEEEEeeccCCCcCcC-EEEEEEEEccc-ccee-cc-eEEEEe
Confidence 34567788999877665 67785 99999999997 3322 32 445544
No 94
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.06 E-value=0.00064 Score=40.26 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=25.1
Q ss_pred CeEEEee------cccEEEeecCCCCCCcceeEEeecc
Q psy10521 9 GKYVVLS------SGDLYVFNATPNDGYKSYRCRTVNK 40 (66)
Q Consensus 9 ~ry~ilp------sGeL~I~nv~~~D~~~~Y~C~~~~~ 40 (66)
+|..+.. ...|.|.||+.+|+ |.|+|++.+.
T Consensus 51 ~R~~~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~v~~~ 87 (100)
T cd05713 51 GRTELLKDAIAEGSVALRIHNVRASDE-GLYTCFFQSD 87 (100)
T ss_pred ceEEeecccccCCcEEEEEEcCChhhC-EEEEEEEecC
Confidence 6776642 24699999999996 9999999874
No 95
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.06 E-value=0.0012 Score=40.76 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=30.1
Q ss_pred cccEEEeecCCCCCCcceeEEeeccccCcEEecc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQASV 49 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~ 49 (66)
++.|.|+||+.+|. |.|+|.+...=.|..+.+.
T Consensus 59 d~sl~i~nv~~~D~-G~Y~C~v~tfP~G~~~~~~ 91 (96)
T cd05887 59 DATIMLENVGFSDI-GVYICKAVTFPLGNTQSST 91 (96)
T ss_pred ccEEEEeCCCcccc-EEEEEEEEeCCCCCeeEEE
Confidence 78999999999996 9999999999999887764
No 96
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.05 E-value=0.0011 Score=40.07 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=33.0
Q ss_pred CCeEEEee----cccEEEeecCCCCCCcceeEEeecccc-CcEEecccceeEEE
Q psy10521 8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNKIT-GESQASVFQTRLSI 56 (66)
Q Consensus 8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~lT-ge~~~S~~~~~l~v 56 (66)
.+||.+.- +-.|.|.+++.+|. +.|.|++.+.-. .+..... +.+|.|
T Consensus 59 ~~r~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~Ca~~~~~~~~~~~fg~-gT~L~V 110 (110)
T cd05899 59 KDRFSASRPSLTRSSLTIKSAEPEDS-AVYLCASSLGGGADEAYFGP-GTRLTV 110 (110)
T ss_pred CCceEEECcCCCccEEEECCCChhhC-EEEEEEeeCCCCccceEECC-CEEEeC
Confidence 46887753 23699999999996 999999987542 2344443 666654
No 97
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.03 E-value=0.002 Score=39.93 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=25.3
Q ss_pred CCeEEEe--e---cccEEEeecCCCCCCcceeEEeecc
Q psy10521 8 GGKYVVL--S---SGDLYVFNATPNDGYKSYRCRTVNK 40 (66)
Q Consensus 8 ~~ry~il--p---sGeL~I~nv~~~D~~~~Y~C~~~~~ 40 (66)
.|||.++ + +-.|.|.|++.+|. +.|.|++...
T Consensus 66 ~gR~~~~~~~~~~~~sL~I~~l~~~Ds-g~Y~C~~~~~ 102 (119)
T cd05712 66 RGRFRLLGDLGKKNCSLLISDAQPEDS-GKYFFRVELG 102 (119)
T ss_pred cccEEEecCCCCCEEEEEEccCChhhC-eEEEEEEEcC
Confidence 3688773 2 23599999999996 9999998764
No 98
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=96.99 E-value=0.0012 Score=38.76 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=24.1
Q ss_pred CCeEEEeecccEEEeecCCCCCCcceeEEeecc
Q psy10521 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 40 (66)
Q Consensus 8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~ 40 (66)
+|+-+-...+.|.|.++ .+|. |.|+|++.|.
T Consensus 38 ng~~l~~~~~~l~i~~~-~~ds-G~Y~C~a~~~ 68 (78)
T cd05752 38 NGKLLETTTNSYRIRAA-NNDS-GEYRCQTQGS 68 (78)
T ss_pred CCEEeeccCCeEEEeec-ccCC-EEeEEECCCC
Confidence 34433345788999999 8886 9999999875
No 99
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=96.96 E-value=0.0026 Score=39.21 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=25.2
Q ss_pred cccEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKITGES 45 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~ 45 (66)
++-|.|.+|+.+|+ |.|+|.+.+..-|..
T Consensus 54 ~~~L~I~~v~~~D~-G~YtC~~~~~~~g~~ 82 (95)
T cd05897 54 STYLHIIDVSLNDS-GYYTCKLQFTHEGKK 82 (95)
T ss_pred CCEEEEEEcChhhC-EEEEEEEEEeeCCEE
Confidence 46899999999996 999999999876654
No 100
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=96.95 E-value=0.00063 Score=40.56 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=23.5
Q ss_pred cccEEEeecCCCCCCcceeEEeecccc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
.|.|.|.++..+|+ |.|+|.|.|.+=
T Consensus 43 ~~~L~i~~~~~~D~-G~YtC~A~N~~G 68 (79)
T cd05855 43 HGCLQLDNPTHLNN-GIYTLVAKNEYG 68 (79)
T ss_pred EEEEEECCCCcccC-EEEEEEEEcCCc
Confidence 57899999999996 999999999864
No 101
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=96.91 E-value=0.0015 Score=40.39 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=26.5
Q ss_pred CCeEEEee------cccEEEeecCCCCCCcceeEEeeccc
Q psy10521 8 GGKYVVLS------SGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 8 ~~ry~ilp------sGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
.||+.+.. +..|.|+|++.+|+ +.|+|++.+..
T Consensus 57 ~gR~~~~~~~~~~~~asL~I~~l~~sD~-G~Y~C~v~~~~ 95 (110)
T cd05878 57 QGRVSLPNYPENRGDASLEISRLRSSDS-GVYRCEVMHGI 95 (110)
T ss_pred cCeEEeccCCCCCCcEEEEECCCChhhC-EEEEEEEEeCC
Confidence 46877732 35599999999996 99999999864
No 102
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=96.90 E-value=0.0022 Score=38.66 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=24.9
Q ss_pred ecccEEEeecCCCCCCcceeEEeeccccCcEE
Q psy10521 15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQ 46 (66)
Q Consensus 15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~ 46 (66)
..|.|.|.+++.+|. |.|.|.+.|.. |..+
T Consensus 58 ~~~~L~I~~~~~~Ds-G~Y~C~~~N~~-g~~~ 87 (94)
T cd05756 58 QKDLLWFLPAALEDS-GLYTCVVRNST-YCMK 87 (94)
T ss_pred cCCeEEEccCCcccC-eEEEEEEcCCC-ccEE
Confidence 368899999999997 99999999964 4433
No 103
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=96.86 E-value=0.0015 Score=39.15 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=26.1
Q ss_pred CCeEEEee----cccEEEeecCCCCCCcceeEEeecc
Q psy10521 8 GGKYVVLS----SGDLYVFNATPNDGYKSYRCRTVNK 40 (66)
Q Consensus 8 ~~ry~ilp----sGeL~I~nv~~~D~~~~Y~C~~~~~ 40 (66)
.+|+.+.. +..|.|.|++.+|. +.|+|.+.+.
T Consensus 55 ~~R~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C~v~~~ 90 (106)
T cd05877 55 QGRVFLRRAHDLDASLVITDLRLEDY-GRYRCEVIDG 90 (106)
T ss_pred cCcEEecCCCCCcEEEEEccCChHHC-EEEEEEEEec
Confidence 46777753 34799999999996 9999999874
No 104
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=96.86 E-value=0.0012 Score=39.69 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=22.0
Q ss_pred cccEEEeecCCCCCCcceeEEeecc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNK 40 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~ 40 (66)
+..|.|.||+.+|. |.|+|.+.+.
T Consensus 67 ~~sL~I~~v~~sD~-G~Y~C~v~~~ 90 (106)
T cd05714 67 DASLVITDLRLEDS-GRYRCEVIDG 90 (106)
T ss_pred cceEEECCCCHHHC-EEEEEEEEcC
Confidence 67899999999996 9999999975
No 105
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=96.84 E-value=0.00067 Score=38.02 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.5
Q ss_pred cccEEEeecCCCCCCcceeEEeeccc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
.+.|.|.+++.+|. +.|.|++.|..
T Consensus 47 ~~~L~i~~v~~~D~-G~Y~C~a~N~~ 71 (82)
T cd05856 47 KWTLSLKNLKPEDS-GKYTCHVSNRA 71 (82)
T ss_pred eEEEEEccCChhhC-EEEEEEEEcCC
Confidence 46799999999995 99999999986
No 106
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.84 E-value=0.0019 Score=40.23 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=36.3
Q ss_pred CCeEEEe--ecc---cEEEeecCCCCCCcceeEEeeccc---cCcEEecccceeEEEe
Q psy10521 8 GGKYVVL--SSG---DLYVFNATPNDGYKSYRCRTVNKI---TGESQASVFQTRLSIT 57 (66)
Q Consensus 8 ~~ry~il--psG---eL~I~nv~~~D~~~~Y~C~~~~~l---Tge~~~S~~~~~l~v~ 57 (66)
.+||.+. ++. .|.|.+++.+|. +.|.|.+.... +++..... +.+|.|.
T Consensus 62 ~~rf~~~~~~~~~~~~L~I~~~~~~Ds-a~YyCa~~~~~~~~~~~~~FG~-GT~L~V~ 117 (117)
T cd04981 62 KGRFTITRDTSKSTVYLQLNSLTPEDT-AVYYCARGLGGYGYGYFDYWGQ-GTLVTVS 117 (117)
T ss_pred CCcEEEEEEccCCEEEEEECCCCHHHC-EEEEEEEEcCCCCCccEeeECC-CEEEEEC
Confidence 4688885 222 599999999996 99999998643 45666666 7888874
No 107
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=96.82 E-value=0.0013 Score=39.86 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=26.8
Q ss_pred ccCCeEEEeecccEEEeecCCCCCCcceeEEeec
Q psy10521 6 FVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVN 39 (66)
Q Consensus 6 ~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~ 39 (66)
..++|+.+...| |.|++++.+|+ |.|.|.+.-
T Consensus 37 ~~~~r~~~~~~G-LlI~~~~~~ds-G~Y~C~s~E 68 (85)
T cd05872 37 NAQFSYRVGTDG-LLILVTSPEHS-GTYRCYSEE 68 (85)
T ss_pred CCCcceEEeCCC-CEEEECCHhhC-EEEEEEEec
Confidence 345788888888 77999999996 999999873
No 108
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=96.79 E-value=0.003 Score=36.52 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=25.6
Q ss_pred CCeEEEee-cccEEEeecCCCC---CCcceeEEeeccc
Q psy10521 8 GGKYVVLS-SGDLYVFNATPND---GYKSYRCRTVNKI 41 (66)
Q Consensus 8 ~~ry~ilp-sGeL~I~nv~~~D---~~~~Y~C~~~~~l 41 (66)
+.++.+.+ +|.|.|..++.++ ..+.|.|.|.|.+
T Consensus 29 ~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~ 66 (77)
T cd05874 29 DPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNER 66 (77)
T ss_pred CCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCC
Confidence 34566654 7999999998653 2599999999964
No 109
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=96.79 E-value=0.001 Score=41.38 Aligned_cols=26 Identities=19% Similarity=0.560 Sum_probs=22.3
Q ss_pred cccEEEeecCCCCCCcceeEEeecccc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
+..|.|.+|+.+|+ +.|+|.+.|.-.
T Consensus 78 ~~sL~I~~v~~~D~-G~Y~C~v~~~~~ 103 (115)
T cd05880 78 DASILIWQLQPTDN-GTYTCQVKNPPD 103 (115)
T ss_pred ceEEEEeeCChhhC-EEEEEEEEeCCC
Confidence 45599999999996 999999997644
No 110
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=96.76 E-value=0.00075 Score=38.97 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.6
Q ss_pred ecccEEEeecCCCCCCcceeEEeeccc
Q psy10521 15 SSGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 15 psGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
..|.|.|.+|+.+|. +.|.|.+.|..
T Consensus 50 ~~~~L~I~~v~~~Ds-G~Y~C~a~n~~ 75 (85)
T cd05754 50 FNGILTIRNVQLSDA-GTYVCTGSNML 75 (85)
T ss_pred cCCEEEECCCCHHHC-EEEEEEEeccC
Confidence 478999999999996 99999999876
No 111
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=96.76 E-value=0.0011 Score=41.99 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=23.6
Q ss_pred cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKITG 43 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTg 43 (66)
++.|.|+||+.+|. |.|.|.++|+-..
T Consensus 79 daSI~I~nv~~sD~-G~Y~C~v~n~p~~ 105 (116)
T cd05879 79 DGSIVIHNLDYTDN-GTFTCDVKNPPDI 105 (116)
T ss_pred eeEEEEccCCcccC-EEEEEEEEcCCCc
Confidence 45699999999996 9999999988654
No 112
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=96.76 E-value=0.0034 Score=38.67 Aligned_cols=32 Identities=16% Similarity=0.372 Sum_probs=26.5
Q ss_pred cCCeEEEee-ccc---EEEeecCCCCCCcceeEEeec
Q psy10521 7 VGGKYVVLS-SGD---LYVFNATPNDGYKSYRCRTVN 39 (66)
Q Consensus 7 ~~~ry~ilp-sGe---L~I~nv~~~D~~~~Y~C~~~~ 39 (66)
.+.||.+.. +|+ |.|.+|+.+|+ |.|.|++..
T Consensus 48 ~d~Rf~~~~~~~~~~tL~I~~vq~~D~-G~Y~Cqv~t 83 (95)
T cd05881 48 KDSRFQLVNFSSNELRVSLSNVSLSDE-GRYFCQLYT 83 (95)
T ss_pred CCcCEEEEeCCCCEEEEEECcCCcccC-EEEEEEEEc
Confidence 467888765 454 89999999996 999999975
No 113
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=96.76 E-value=0.0012 Score=37.67 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.7
Q ss_pred cccEEEeecCCCCCCcceeEEeeccc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
.+.|.|.+++.+|+ +.|.|.+.|.+
T Consensus 50 ~~~l~i~~~~~~D~-G~Y~C~a~N~~ 74 (85)
T cd05857 50 HWSLIMESVVPSDK-GNYTCVVENEY 74 (85)
T ss_pred ceEEEEccCCcccC-EEEEEEEEeCC
Confidence 56799999999996 99999999986
No 114
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=96.74 E-value=0.005 Score=33.00 Aligned_cols=35 Identities=31% Similarity=0.580 Sum_probs=27.7
Q ss_pred CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccC
Q psy10521 8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITG 43 (66)
Q Consensus 8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTg 43 (66)
.+++.+... ..|.|.+++.+|+ +.|.|.+.+....
T Consensus 39 ~~~~~~~~~~~~~~l~i~~~~~~d~-G~Y~C~v~~~~~~ 76 (86)
T smart00410 39 SGRFSVSRSGSNSTLTISNVTPEDS-GTYTCAATNSSGS 76 (86)
T ss_pred CCcEEEEEcCCeeEEEEEeeccccC-eEEEEEEEcCCCe
Confidence 456666655 6899999999997 9999999965443
No 115
>smart00409 IG Immunoglobulin.
Probab=96.74 E-value=0.005 Score=33.00 Aligned_cols=35 Identities=31% Similarity=0.580 Sum_probs=27.7
Q ss_pred CCeEEEeec---ccEEEeecCCCCCCcceeEEeeccccC
Q psy10521 8 GGKYVVLSS---GDLYVFNATPNDGYKSYRCRTVNKITG 43 (66)
Q Consensus 8 ~~ry~ilps---GeL~I~nv~~~D~~~~Y~C~~~~~lTg 43 (66)
.+++.+... ..|.|.+++.+|+ +.|.|.+.+....
T Consensus 39 ~~~~~~~~~~~~~~l~i~~~~~~d~-G~Y~C~v~~~~~~ 76 (86)
T smart00409 39 SGRFSVSRSGSNSTLTISNVTPEDS-GTYTCAATNSSGS 76 (86)
T ss_pred CCcEEEEEcCCeeEEEEEeeccccC-eEEEEEEEcCCCe
Confidence 456666655 6899999999997 9999999965443
No 116
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=96.73 E-value=0.0024 Score=39.22 Aligned_cols=38 Identities=29% Similarity=0.478 Sum_probs=27.4
Q ss_pred ccEEEeecC-CCCCCcceeEEeeccccCcEEecccceeEEEecc
Q psy10521 17 GDLYVFNAT-PNDGYKSYRCRTVNKITGESQASVFQTRLSITGF 59 (66)
Q Consensus 17 GeL~I~nv~-~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep 59 (66)
+.|.|.+|. .+| .+.|.|.+.|.+ |+. +. ...|.+.++
T Consensus 69 s~L~I~~v~~~~D-~G~Y~C~A~N~~-G~~--~~-~i~L~~~~~ 107 (109)
T cd05773 69 SILTIINVSAALD-YALFTCTAHNSL-GED--SL-DIQLVSTSR 107 (109)
T ss_pred eEEEECcCCccCC-CEEEEEEEEeCC-ccC--cE-EEEEEecCC
Confidence 579999998 477 589999999998 332 22 346666653
No 117
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=96.71 E-value=0.0016 Score=35.27 Aligned_cols=18 Identities=39% Similarity=0.739 Sum_probs=17.0
Q ss_pred EEEeecCCCCCCcceeEEe
Q psy10521 19 LYVFNATPNDGYKSYRCRT 37 (66)
Q Consensus 19 L~I~nv~~~D~~~~Y~C~~ 37 (66)
|.|.+|+++|+ +.|.|.+
T Consensus 47 L~i~~v~~~d~-G~Y~C~v 64 (64)
T PF00047_consen 47 LTISNVTPEDS-GTYTCVV 64 (64)
T ss_dssp EEESSCTGGGT-EEEEEEE
T ss_pred EEEccCCHHHC-EEEEEEC
Confidence 99999999996 9999986
No 118
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=96.69 E-value=0.0013 Score=38.46 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.8
Q ss_pred ecccEEEeecCCCCCCcceeEEeecccc
Q psy10521 15 SSGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 15 psGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
..+.|.|.+|..+| .+.|.|.+.|.+-
T Consensus 54 ~~~~L~I~~v~~~D-~g~Y~C~A~N~~G 80 (90)
T cd04972 54 DIYNLQLSNITSET-QTTVTCTAENPVG 80 (90)
T ss_pred CEEEEEEecCCccc-CEEEEEEEECCCC
Confidence 45789999999999 6999999999873
No 119
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=96.68 E-value=0.0026 Score=38.89 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=23.2
Q ss_pred ccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521 17 GDLYVFNATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 17 GeL~I~nv~~~D~~~~Y~C~~~~~lTge 44 (66)
..|.|.+++.+|. |.|.|.+.|.. |+
T Consensus 65 s~L~I~~v~~~D~-G~Ytc~A~N~~-g~ 90 (101)
T cd05859 65 SKLKLIRAKEEDS-GLYTALAQNED-AV 90 (101)
T ss_pred cEEEEeeCCHHHC-EEEEEEEEcCC-ce
Confidence 5799999999996 99999999985 44
No 120
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=96.66 E-value=0.0017 Score=40.84 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.9
Q ss_pred cEEEeecCCCCCCcceeEEeecc
Q psy10521 18 DLYVFNATPNDGYKSYRCRTVNK 40 (66)
Q Consensus 18 eL~I~nv~~~D~~~~Y~C~~~~~ 40 (66)
.|.|.||+.+|+ |.|.|++.+.
T Consensus 2 sL~i~~v~~~D~-G~Y~C~~~~~ 23 (139)
T cd05771 2 SLTLPGLTVHDE-GTYICSVSTP 23 (139)
T ss_pred eEEECCCCHHHC-EEEEEEEEcc
Confidence 489999999996 9999999875
No 121
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=96.66 E-value=0.0034 Score=39.50 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=28.6
Q ss_pred CeEEEee------cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521 9 GKYVVLS------SGDLYVFNATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 9 ~ry~ilp------sGeL~I~nv~~~D~~~~Y~C~~~~~lTge 44 (66)
+|+.+.. +..|.|.|++.+|. +.|+|.+.+-+-.+
T Consensus 60 ~R~sl~~~~~~~~~asL~I~nl~~sDs-G~Y~C~V~~g~~~~ 100 (112)
T cd05900 60 DRVSLPNYPAIPSDATLEITELRSNDS-GTYRCEVMHGIEDN 100 (112)
T ss_pred CeEEecccCCCCCCcEEEEeecccccC-EEEEEEEecCCCCc
Confidence 4777742 77899999999996 99999999875544
No 122
>KOG3513|consensus
Probab=96.65 E-value=0.0038 Score=52.25 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=44.3
Q ss_pred ccCccCC--eEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEe
Q psy10521 3 SDDFVGG--KYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57 (66)
Q Consensus 3 ps~~~~~--ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ 57 (66)
|.+..+. |+.+..+|+|||.||..+|. +.|.|-+.++.|..-+... +..|++.
T Consensus 177 ~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~-~~Y~C~a~~~~~~~~v~~~-~~~L~~~ 231 (1051)
T KOG3513|consen 177 PHFVQIDNRRVFSQENGNLYFSNVETSDF-GNYICSATFPSTQTIVQGP-PFPLIVR 231 (1051)
T ss_pred CcccccCcceeEecccceEEEeecchhhc-CceEEEEEchhhcccccCC-ceeEEEc
Confidence 4444444 88888999999999999997 9999999999998888877 7778773
No 123
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.56 E-value=0.0013 Score=36.45 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=24.0
Q ss_pred cCCeEEEeec-----ccEEEeecCCCCCCcceeEEe
Q psy10521 7 VGGKYVVLSS-----GDLYVFNATPNDGYKSYRCRT 37 (66)
Q Consensus 7 ~~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~ 37 (66)
..+|+.+... ..|.|.|++.+|. +.|.|++
T Consensus 47 ~~~R~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~v 81 (81)
T smart00406 47 YKGRVTISKDTSKNDVSLTISNLRVEDT-GTYYCAV 81 (81)
T ss_pred cCCcEEEEecCcCCEEEEEEcCCCHHHC-EEEEEcC
Confidence 3578877644 4589999999996 9999974
No 124
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=96.56 E-value=0.004 Score=38.55 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=29.2
Q ss_pred CCeEEEee-------cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521 8 GGKYVVLS-------SGDLYVFNATPNDGYKSYRCRTVNKITG 43 (66)
Q Consensus 8 ~~ry~ilp-------sGeL~I~nv~~~D~~~~Y~C~~~~~lTg 43 (66)
.+||.|.. .=+|.|.|+..+|-.+.|.|.+.|.+=.
T Consensus 48 ~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~ 90 (98)
T cd05898 48 SERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGS 90 (98)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCcc
Confidence 57998854 3379999999888668999999998743
No 125
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=96.54 E-value=0.0015 Score=38.39 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.7
Q ss_pred cccEEEeecCCCCCCcceeEEeeccc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
+++|.|.+++.+|. |.|+|++.+..
T Consensus 47 ~~~l~I~~~~~~ds-G~Y~C~~~~~~ 71 (83)
T cd05753 47 NSNLSIPQATLSDS-GSYHCSGIIGS 71 (83)
T ss_pred CceEEECccCHHHC-EEEEEEEEeCC
Confidence 57899999999996 99999999875
No 126
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.53 E-value=0.0054 Score=37.21 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=31.7
Q ss_pred CCeEEEeec-----ccEEEeecCCCCCCcceeEEeecccc--CcEEecccceeEEE
Q psy10521 8 GGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKIT--GESQASVFQTRLSI 56 (66)
Q Consensus 8 ~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~lT--ge~~~S~~~~~l~v 56 (66)
.+||.+..+ -.|.|.+++.+|. +.|.|++...-. .+..... +.+|.|
T Consensus 63 ~~r~~~~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~fg~-gt~l~V 116 (116)
T cd04982 63 KNKFEARKDVGKSTSTLTIQNLEKEDS-ATYYCAYWESGSSYYIKVFGS-GTKLIV 116 (116)
T ss_pred CCCEEEEEECCCCEEEEEEEECCHHHC-EEEEEEEecCCCCccceEECC-CEEEeC
Confidence 578887633 3699999999996 999999975311 2333333 555554
No 127
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=96.53 E-value=0.0056 Score=42.62 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=29.0
Q ss_pred CCeEEEeec-ccEEEeecCCCCCCcceeEEeeccccCcEE
Q psy10521 8 GGKYVVLSS-GDLYVFNATPNDGYKSYRCRTVNKITGESQ 46 (66)
Q Consensus 8 ~~ry~ilps-GeL~I~nv~~~D~~~~Y~C~~~~~lTge~~ 46 (66)
++++.+..+ +.|.|.||+.+|+ |.|.|.+....-|...
T Consensus 178 ~~r~~~~~~~~~L~I~~V~~~Ds-G~YtC~a~~~~~g~~y 216 (227)
T PHA02826 178 TDRIQLRNNNSTLVIKSATHDDS-GIYTCNLRFNKNSNNY 216 (227)
T ss_pred CCCEEEeCCCCEEEECcCCHHhC-EEEEEEEEEeECCEEE
Confidence 446666554 4799999999996 9999999987655443
No 128
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=96.40 E-value=0.0028 Score=38.89 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.8
Q ss_pred ccEEEeecCCCCCCcceeEEeecc
Q psy10521 17 GDLYVFNATPNDGYKSYRCRTVNK 40 (66)
Q Consensus 17 GeL~I~nv~~~D~~~~Y~C~~~~~ 40 (66)
..|.|.||+.+|+ +.|.|++.|.
T Consensus 80 ~sL~I~~v~~~D~-G~Y~C~v~~~ 102 (116)
T cd05715 80 ASIVIHNLQFTDN-GTYTCDVKNP 102 (116)
T ss_pred eEEEEeeCCcccC-EEEEEEEEeC
Confidence 4599999999996 9999999976
No 129
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.39 E-value=0.0072 Score=36.83 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=35.0
Q ss_pred CCeEEEe--ec---ccEEEeecCCCCCCcceeEEeecccc-----CcEEecccceeEEEe
Q psy10521 8 GGKYVVL--SS---GDLYVFNATPNDGYKSYRCRTVNKIT-----GESQASVFQTRLSIT 57 (66)
Q Consensus 8 ~~ry~il--ps---GeL~I~nv~~~D~~~~Y~C~~~~~lT-----ge~~~S~~~~~l~v~ 57 (66)
.+||.+. .+ -.|.|.+++.+|. +.|.|++..... .+..... +.+|.|.
T Consensus 58 ~~R~~~~~~~~~~~~sL~I~~~~~~Ds-g~Y~C~~~~~~~~~~~~~~~~fg~-gt~l~v~ 115 (116)
T cd07706 58 KGRYSVNFQKAQKSISLTISALQLEDS-AKYFCALSTLGMGSYDTDKLIFGK-GTRVTVE 115 (116)
T ss_pred CCeEEEEEeccCCEEEEEECCCCHHHC-EEEEEEEECCCCCcccccCCEECC-CeEEEEc
Confidence 4789885 22 2599999999996 999999996543 3344454 7788775
No 130
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=96.36 E-value=0.0077 Score=35.72 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=26.7
Q ss_pred CCeEEEe-ecc---cEEEeecCCCCCCcceeEEeeccccCc
Q psy10521 8 GGKYVVL-SSG---DLYVFNATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 8 ~~ry~il-psG---eL~I~nv~~~D~~~~Y~C~~~~~lTge 44 (66)
+++|.+. .+| .|.|.+++.+|. +.|.|.+.|.+-.+
T Consensus 45 ~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~G~~ 84 (92)
T cd05891 45 SEHYSVKLEQGKYASLTIKGVTSEDS-GKYSINVKNKYGGE 84 (92)
T ss_pred CCCEEEEEcCCCEEEEEECCCChhhC-EEEEEEEEeCCCce
Confidence 3455543 333 699999999996 99999999975443
No 131
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=96.35 E-value=0.0043 Score=43.20 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.3
Q ss_pred ecccEEEeecCCCCCCcceeEEeeccc
Q psy10521 15 SSGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 15 psGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
..+.|.|.+|+.+|+ |.|.|++.|..
T Consensus 96 r~~~L~I~~v~~~Ds-G~Y~C~a~N~~ 121 (227)
T PHA02826 96 RSENLWIGNVINIDE-GIYICTISSGN 121 (227)
T ss_pred CCCeEEECCCChHHC-EEEEEEEEECC
Confidence 367999999999996 99999999955
No 132
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=96.32 E-value=0.0054 Score=36.54 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=23.8
Q ss_pred cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge 44 (66)
+..|.|+||+.+|. +.|+|.+...-.|.
T Consensus 60 ~~sL~I~nv~~~D~-G~Y~C~~~~~p~g~ 87 (97)
T cd05846 60 STSITIWNVTLEDE-GCYKCIFNTFPDGS 87 (97)
T ss_pred ccEEEEeCCceeee-EEEEEEEEeCCCCC
Confidence 55699999999996 99999998766665
No 133
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.31 E-value=0.0019 Score=39.59 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.9
Q ss_pred EEEeecCCCCCCcceeEEeecc
Q psy10521 19 LYVFNATPNDGYKSYRCRTVNK 40 (66)
Q Consensus 19 L~I~nv~~~D~~~~Y~C~~~~~ 40 (66)
|.|.|++.+|. ++|.|.+-|+
T Consensus 67 L~I~~l~~sDs-gtY~C~v~~~ 87 (94)
T cd07690 67 LIIKNLKIEDS-DTYICEVEDK 87 (94)
T ss_pred EEECCCCHHHC-EEEEEEECCc
Confidence 99999999996 9999999887
No 134
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=96.16 E-value=0.007 Score=37.25 Aligned_cols=32 Identities=28% Similarity=0.236 Sum_probs=27.6
Q ss_pred cccEEEeecCCCCCCcceeEEeeccccCcEEec
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 48 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S 48 (66)
++.|.|+||+.+|. |.|+|.+...=+|.....
T Consensus 59 d~sI~i~nvt~~D~-G~Y~C~~~t~P~g~~~~~ 90 (96)
T cd05889 59 DMSLSFNNATEEDV-GLYCCSLVTYPQGSWEKV 90 (96)
T ss_pred ccEEEEcCCCcccC-EEEEEEEEeCCCCCeEEE
Confidence 68999999999996 999999998878776543
No 135
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=96.08 E-value=0.0059 Score=32.84 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=23.1
Q ss_pred EEEeecccEEEeecCCCCCCcceeEEeec
Q psy10521 11 YVVLSSGDLYVFNATPNDGYKSYRCRTVN 39 (66)
Q Consensus 11 y~ilpsGeL~I~nv~~~D~~~~Y~C~~~~ 39 (66)
..-..++.|.|.+|..+|. +.|.|++.|
T Consensus 48 ~~~~~~~~L~i~~v~~~~~-g~y~C~a~N 75 (75)
T PF13927_consen 48 GSSSSNSTLTISNVTRSDN-GTYTCIASN 75 (75)
T ss_dssp EEEEEEEEEEESSCCGGGT-EEEEEEEEE
T ss_pred eccceeeEEEEccCCHHhC-cEEEEEEEC
Confidence 3344588999999999995 889999976
No 136
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=96.06 E-value=0.0066 Score=33.92 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.4
Q ss_pred ccEEEeecCCCCCCcceeEEeeccc
Q psy10521 17 GDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 17 GeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
..|.|.+++.+|. +.|.|.+.|.+
T Consensus 51 ~~l~i~~~~~~d~-g~Y~C~~~n~~ 74 (85)
T cd05729 51 WTLILESVVPSDS-GKYTCIVENKY 74 (85)
T ss_pred EEEEEeECCcccC-EEEEEEEEECC
Confidence 4699999999995 99999999876
No 137
>KOG4222|consensus
Probab=96.05 E-value=0.01 Score=50.50 Aligned_cols=48 Identities=29% Similarity=0.478 Sum_probs=38.8
Q ss_pred CeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccc
Q psy10521 9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFR 60 (66)
Q Consensus 9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~ 60 (66)
.++.+...|.|.|.||..+|+ |+|.|.+.|. -||. .|. +++|.|.|.-
T Consensus 179 ~~~~lisgG~LlIsnvrksD~-GtY~CVatNm-vG~R-eS~-~A~lsv~e~P 226 (1281)
T KOG4222|consen 179 PIIALISGGNLLISNVRKSDE-GTYACVATNM-VGER-ESI-PARLSVQEKP 226 (1281)
T ss_pred eeEEEecCCcEEEeccccCCC-ceeeeeeccc-cccc-ccc-cceeeeccCC
Confidence 456667899999999999996 9999999885 4553 354 8899998753
No 138
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=95.97 E-value=0.011 Score=35.79 Aligned_cols=45 Identities=29% Similarity=0.427 Sum_probs=30.8
Q ss_pred CCeEEE--eecc---cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521 8 GGKYVV--LSSG---DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 56 (66)
Q Consensus 8 ~~ry~i--lpsG---eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v 56 (66)
.+||.+ .+++ .|.|.+++.+|. +.|.|...+. ......+ +.+|.|
T Consensus 58 ~~rf~~~~~~~~~~~~L~I~~~~~~Ds-g~YyCa~~~~--~~~~Fg~-gT~L~V 107 (107)
T cd07700 58 QEKFSIRVTSDSSRYRLHINRVKPEDS-GTYFCMTVGS--PELTFGT-GTQLSV 107 (107)
T ss_pred cCcEEEEEECCCCEEEEEECCCCHHHC-EEEEEeEcCC--CCCEECc-CEEEeC
Confidence 357765 3333 399999999996 9999998743 3344454 666654
No 139
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=95.88 E-value=0.01 Score=37.23 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=26.9
Q ss_pred CCeEEEee------cccEEEeecCCCCCCcceeEEeeccc
Q psy10521 8 GGKYVVLS------SGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 8 ~~ry~ilp------sGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
.||..+.. +..|.|.||+.+|. +.|+|.+.+-.
T Consensus 57 ~gRvsl~~~~~~~~~asL~i~nv~~~D~-G~Y~C~v~~g~ 95 (110)
T cd05902 57 QGRVSLPGYPKNRYNASLVLSRLRYSDS-GTYRCEVVLGI 95 (110)
T ss_pred ccEEEeecCCCCCceEEEEECCCCHHHC-EEEEEEEEECC
Confidence 46777743 55899999999996 99999999843
No 140
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=95.83 E-value=0.011 Score=34.77 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=26.9
Q ss_pred cCCeEEEeec-----ccEEEeecCCCCCCcceeEEeeccc
Q psy10521 7 VGGKYVVLSS-----GDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 7 ~~~ry~ilps-----GeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
..+|+.+..+ -.|.|.+|+.+|. +.|.|++....
T Consensus 49 ~~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~ 87 (98)
T cd05716 49 YEGRVSLTDDPDNGVFTVTLNQLRKEDA-GWYWCGVGDDG 87 (98)
T ss_pred cCCCEEEEecCCCCEEEEEEcCCCHHHC-EEEEEEcccCC
Confidence 3578887532 2599999999996 99999998764
No 141
>PHA02785 IL-beta-binding protein; Provisional
Probab=95.66 E-value=0.012 Score=42.48 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=22.9
Q ss_pred cccEEEeecCCCCCCcceeEEeeccc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
+|.|.|.+|+.+|. +.|.|.|.|..
T Consensus 291 ~~~L~I~~V~~~D~-G~Y~C~A~n~~ 315 (326)
T PHA02785 291 TSRLNINPVKEEDA-TTFTCMAFTIP 315 (326)
T ss_pred eEEEEECCcchhcC-eeeEEEEEecc
Confidence 57899999999996 99999999976
No 142
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=95.65 E-value=0.013 Score=37.63 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=28.2
Q ss_pred CCeEEEee------cccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521 8 GGKYVVLS------SGDLYVFNATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 8 ~~ry~ilp------sGeL~I~nv~~~D~~~~Y~C~~~~~lTge 44 (66)
.||-.+.. +..|.|.||+.+|. |.|+|.+.+....+
T Consensus 64 ~gRv~l~~~~~~~g~asL~i~~v~~sD~-G~Y~C~V~~g~~~~ 105 (117)
T cd05901 64 MGRVSVPSHPEDQGDASLTIVKLRASDA-GVYRCEVMHGIEDT 105 (117)
T ss_pred cCcEEeeccCCcCCceEEEEcccccccC-EEEEEEEEECCccc
Confidence 45666642 57899999999996 99999999876433
No 143
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=95.52 E-value=0.028 Score=30.68 Aligned_cols=24 Identities=33% Similarity=0.702 Sum_probs=20.3
Q ss_pred cEEEeecCCCCCCcceeEEeecccc
Q psy10521 18 DLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 18 eL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
.|+|.+++.+|. +.|.|++.+.-.
T Consensus 46 ~~~~~~~~~~~~-g~y~C~~~~~~~ 69 (80)
T PF13895_consen 46 GLFIPNVSPEDS-GNYTCRASNGSG 69 (80)
T ss_dssp EEEESSEEGGGT-EEEEEEEEETTE
T ss_pred eeeeeeeccccC-EEEEEEEEeCCC
Confidence 399999999985 999999988543
No 144
>PHA03376 BARF1; Provisional
Probab=95.27 E-value=0.057 Score=38.48 Aligned_cols=50 Identities=20% Similarity=0.174 Sum_probs=36.6
Q ss_pred CCeEEEee---cccEEEeecCCCCCCcceeEEeeccccCcEEeccc----ceeEEEec
Q psy10521 8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVF----QTRLSITG 58 (66)
Q Consensus 8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~----~~~l~v~e 58 (66)
.|++.|.. +=.|.|.|++.+|. |+|+|.+...-+|-.++.-. +-.|.|..
T Consensus 75 RGrtD~~~~~gnvsLvI~~l~lSDd-GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a 131 (221)
T PHA03376 75 RGFFDIHRSANTFFLVVTAANISHD-GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHS 131 (221)
T ss_pred ccEEEEEecCCeEEEEEEeeeecCC-ceEEEEEEcCCCceeeeeeeeeeecceEEEEe
Confidence 46677743 33589999999995 99999999988888887531 22366654
No 145
>KOG4221|consensus
Probab=94.98 E-value=0.055 Score=46.52 Aligned_cols=48 Identities=25% Similarity=0.437 Sum_probs=37.1
Q ss_pred CeEEEeecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccc
Q psy10521 9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRA 61 (66)
Q Consensus 9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~ 61 (66)
-|+.++-.++|+|.|++.+|. +.|.|++.| |.+.... .+.|.|..|-+
T Consensus 283 ~rivl~g~~slliS~a~~~dS-g~YtC~Atn--~~D~ida--saev~V~a~P~ 330 (1381)
T KOG4221|consen 283 YRIVLVGGSSLLISNATDDDS-GKYTCRATN--TNDSIDA--SAEVTVLAPPG 330 (1381)
T ss_pred eEEEEecccceEEeccccccC-ceEEEEecC--CCccccc--ceEEEEEcCCC
Confidence 477777899999999999995 999999999 5554433 45666665543
No 146
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=94.90 E-value=0.038 Score=31.27 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=19.2
Q ss_pred cccEEEeecCCCCCCcceeEEeeccc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
.+.|.|.|++ | .+.|.|.+.|.+
T Consensus 37 ~~~L~i~~~~--d-~G~Y~C~A~N~~ 59 (69)
T cd05739 37 RNVLELTNIY--E-SANYTCVAISSL 59 (69)
T ss_pred ccEEEEeccc--c-CeeEEEEEEeCC
Confidence 4579999986 4 379999999987
No 147
>KOG4194|consensus
Probab=94.86 E-value=0.056 Score=44.27 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=40.2
Q ss_pred CCeEEEee-cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec-cccccc
Q psy10521 8 GGKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG-FRAVYS 64 (66)
Q Consensus 8 ~~ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e-p~~~~~ 64 (66)
+.|-+++| .-..+|.||..||. |-|.|.+.|. .|+.+.+ |.|+|-| |.-+.|
T Consensus 659 eRRl~Vmpedd~f~Itnvk~eD~-GiYtC~A~n~-AG~isan---AtL~V~e~p~f~~P 712 (873)
T KOG4194|consen 659 ERRLHVMPEDDVFFITNVKIEDQ-GIYTCTAQNV-AGQISAN---ATLTVLETPSFSIP 712 (873)
T ss_pred hheeeecCCCCEEEEeccccccc-ceeEEeeecc-ccceeec---eEEEEecCCccccc
Confidence 34777888 66789999999995 9999999986 6776655 3777776 566655
No 148
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=94.82 E-value=0.026 Score=34.22 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=24.7
Q ss_pred CCeEEEee---cccEEEeecCCCCCCcceeEEeec
Q psy10521 8 GGKYVVLS---SGDLYVFNATPNDGYKSYRCRTVN 39 (66)
Q Consensus 8 ~~ry~ilp---sGeL~I~nv~~~D~~~~Y~C~~~~ 39 (66)
.+||.+.. .-.|.|.+++.+|. +.|.|++..
T Consensus 57 ~~rf~~~~~~~~~~L~I~~~~~sDs-gtY~Ca~~~ 90 (104)
T cd05720 57 SKRFSGSRSSNSFVLTLKNFQKENE-GYYFCSVAS 90 (104)
T ss_pred CceEEEEecCCEEEEEECCCCHHHC-EEEEEEEcc
Confidence 46788744 33599999999996 999999863
No 149
>PHA02633 hypothetical protein; Provisional
Probab=94.68 E-value=0.036 Score=32.73 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=22.7
Q ss_pred ecccEEEeecCCCCCCcceeEEeecc
Q psy10521 15 SSGDLYVFNATPNDGYKSYRCRTVNK 40 (66)
Q Consensus 15 psGeL~I~nv~~~D~~~~Y~C~~~~~ 40 (66)
-...|.|.++..+|. |.|.|+++|.
T Consensus 16 ~~~nLwilpa~~sDS-GiYiC~~rn~ 40 (63)
T PHA02633 16 NCNNMLILNPTQSDS-GIYMCITKNE 40 (63)
T ss_pred ccccEEEeccccccC-cEEEEEEcCC
Confidence 578899999999996 9999999975
No 150
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=94.47 E-value=0.038 Score=27.53 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=23.8
Q ss_pred EeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521 13 VLSSGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 13 ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
......|.|.+++.+|. +.|.|.+.+..
T Consensus 39 ~~~~~~l~i~~~~~~d~-g~y~C~~~~~~ 66 (74)
T cd00096 39 SSGSSTLTISNVTLEDS-GTYTCVASNSA 66 (74)
T ss_pred ceeEEEEEECccCcccC-cEEEEEEecCc
Confidence 44577799999999996 99999999876
No 151
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.05 E-value=0.08 Score=38.80 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=29.2
Q ss_pred CeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521 9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
++.-|.++|+|.+.|.+.++. |.|.|...++.
T Consensus 29 ~~~nIT~TG~L~~~~F~esmS-G~YTCtLsYk~ 60 (271)
T PF07354_consen 29 SYVNITETGKLMFKNFQESMS-GSYTCTLSYKP 60 (271)
T ss_pred CeEEEccCceEEeeccccccC-CceEEEEEEEe
Confidence 356778999999999999996 99999999998
No 152
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=93.55 E-value=0.091 Score=31.42 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.1
Q ss_pred cccEEEeecCCCCCCcceeEEeecc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNK 40 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~ 40 (66)
..++.|.+++.+|+ |.|+|+....
T Consensus 54 ~a~f~I~~~~~~~~-G~Y~C~~~~~ 77 (94)
T cd05711 54 QASFPLGPVTPAHA-GTYRCYGSYN 77 (94)
T ss_pred EEEEEecCCCcccC-EEEEEEEECC
Confidence 33689999999997 9999998644
No 153
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=93.53 E-value=0.1 Score=33.17 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=24.0
Q ss_pred eecccEEEeecCCCCCCcceeEEeeccc
Q psy10521 14 LSSGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 14 lpsGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
.-...|.|..+..||. |.|.|+++|.-
T Consensus 67 ~~~~~Lwf~Pa~~eDS-G~Y~C~~rN~t 93 (104)
T cd05896 67 KEEDSIWFRPAELQDS-GLYTCVLRNST 93 (104)
T ss_pred EeCCEEEEEeCChhhC-eEEEEEECCCC
Confidence 4578899999999996 99999999873
No 154
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=92.26 E-value=0.15 Score=29.29 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=21.4
Q ss_pred cCCeEEEeecccEEEeecCCCCCCcceeEEeeccccC
Q psy10521 7 VGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG 43 (66)
Q Consensus 7 ~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTg 43 (66)
.+|.|.+ ..-|.|....++| .+.|.|++.|.--.
T Consensus 54 ~~gt~~~--~s~l~v~~~~~~~-~~~y~C~v~h~~~~ 87 (95)
T cd00098 54 SDGTYSV--SSQLTVSPSDWNS-GDTYTCVVTHESLP 87 (95)
T ss_pred CCCCEEE--EEEEEECHHHhCC-CCCEEEEEEeCCCC
Confidence 3445554 3335555555556 59999999998554
No 155
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=91.90 E-value=0.17 Score=28.85 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=19.1
Q ss_pred cEEEeecCCCCCCcceeEEeeccccCc
Q psy10521 18 DLYVFNATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 18 eL~I~nv~~~D~~~~Y~C~~~~~lTge 44 (66)
.|.|....++| .+.|+|++.|+.-.+
T Consensus 47 ~L~i~~~~~~~-~~~y~C~a~n~~l~~ 72 (82)
T cd05759 47 TLPITPSDHDT-GRTFTCRARNEALPT 72 (82)
T ss_pred EEEEeCceecC-CCEEEEEEcCccCCC
Confidence 46677666666 489999999986433
No 156
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=91.16 E-value=0.24 Score=29.67 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=22.6
Q ss_pred ecccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521 15 SSGDLYVFNATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge 44 (66)
-+|.|.|.=+..+| .+.|.|++.|+...+
T Consensus 41 ~~s~L~~~~~~~Dd-g~~~~C~A~n~a~~~ 69 (80)
T cd05885 41 VSNTIRFPVDRKDD-GAILSCEASHPALVS 69 (80)
T ss_pred EEEEEEEEeeeccC-CcEEEEEEEChhhCC
Confidence 37889986666555 599999999997654
No 157
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=89.85 E-value=0.32 Score=28.56 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=19.3
Q ss_pred cccEEEeecCCCCCCcceeEEeecccc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
.+.|.|.++. | .+.|.|.+.|.+=
T Consensus 48 ~s~L~i~~~~--d-~g~Y~C~A~N~~G 71 (81)
T cd05749 48 PSVLNVPGLN--E-TSKFSCEAHNAKG 71 (81)
T ss_pred CCEEEEcccc--C-CeEEEEEEEeccC
Confidence 4679999985 4 3799999999854
No 158
>KOG4222|consensus
Probab=86.22 E-value=0.52 Score=40.58 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=30.4
Q ss_pred CccCCeEEEeecccEEEeecCCCCCCcceeEEeecc
Q psy10521 5 DFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 40 (66)
Q Consensus 5 ~~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~ 40 (66)
-...+|..+-+.|.|.|.||+.+|. +-|-|++.+-
T Consensus 364 ~~~~~r~svs~~g~L~it~v~~~d~-g~Yvcq~~~~ 398 (1281)
T KOG4222|consen 364 PSSNGRGSVSPTGTLTITNVRQSDE-GYYVCQTQTS 398 (1281)
T ss_pred CCcCccceecCCCCccccccccccc-ceEeeccccc
Confidence 3457899999999999999999995 9999997643
No 159
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=86.05 E-value=1.4 Score=30.81 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=27.7
Q ss_pred CeEEEe----ecccEEEeecCCCCCCcceeEEeeccccC
Q psy10521 9 GKYVVL----SSGDLYVFNATPNDGYKSYRCRTVNKITG 43 (66)
Q Consensus 9 ~ry~il----psGeL~I~nv~~~D~~~~Y~C~~~~~lTg 43 (66)
+|..++ -+-.|.|.||+.+|+ |-|+|.+.-.-.|
T Consensus 73 ~Rve~mS~s~~~StItIknVt~sDe-GcY~C~F~tfp~G 110 (189)
T PHA02987 73 NKIEYLSKSFNESTILIKNVSLKDN-GCYTCIFNTLLSK 110 (189)
T ss_pred CeEEEeccCCCcceEEEEeCChhhC-eEEEEEEEecCCC
Confidence 466642 267899999999996 9999999887777
No 160
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=85.83 E-value=1.6 Score=24.93 Aligned_cols=32 Identities=34% Similarity=0.385 Sum_probs=21.6
Q ss_pred ccCCeEEEeecccEEEeecCCCCCCcceeEEeeccccC
Q psy10521 6 FVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITG 43 (66)
Q Consensus 6 ~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTg 43 (66)
+.+|.|.+... |.|. +++ ...|.|++.|.-..
T Consensus 48 ~~dgty~~~s~--l~v~---~~~-~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 48 NSDGTYSVTSS--LTVT---WNS-GDEYSCRVTHESLP 79 (83)
T ss_dssp ETTSEEEEEEE--EEEE---TTT-TGGEEEEEEETTSS
T ss_pred ccccceeeeEE--EEec---CCC-CCEEEEEEEECCCC
Confidence 45778887544 4444 544 36999999997543
No 161
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=85.51 E-value=1.2 Score=25.58 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=16.5
Q ss_pred EEEeecCCCCCCcceeEEeeccccC
Q psy10521 19 LYVFNATPNDGYKSYRCRTVNKITG 43 (66)
Q Consensus 19 L~I~nv~~~D~~~~Y~C~~~~~lTg 43 (66)
|.| ....+|....|+|++.|+--.
T Consensus 47 l~~-~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 47 LRF-QVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEE-EcchhhCCCEEEEEEeChhcC
Confidence 444 445555558999999998554
No 162
>KOG4194|consensus
Probab=84.90 E-value=0.75 Score=37.99 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=30.3
Q ss_pred ecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521 15 SSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG 58 (66)
Q Consensus 15 psGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e 58 (66)
-.+.|+..||..+|+ +.|.|.+.|++-.. -|. -+||.|..
T Consensus 572 ~~~~L~L~nVt~td~-grYQCVvtN~FGSt--ysq-k~KltV~~ 611 (873)
T KOG4194|consen 572 YTAILHLDNVTFTDE-GRYQCVVTNHFGST--YSQ-KAKLTVNQ 611 (873)
T ss_pred hhheeeeeeeecccC-ceEEEEEecccCcc--hhh-eeEEEeec
Confidence 378999999999996 99999999986432 122 45676654
No 163
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=82.41 E-value=2.8 Score=23.69 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=13.8
Q ss_pred EEEeecCCCCCCcceeEEeeccc
Q psy10521 19 LYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 19 L~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
|.|.-..+.+ ...|.|++.|.-
T Consensus 50 L~v~~~~~~~-~~~~tC~V~H~~ 71 (75)
T smart00407 50 LTVSASTWES-GDTYTCQVTHEG 71 (75)
T ss_pred EEEccccCCC-CCEEEEEEEEcC
Confidence 3333334444 489999999873
No 164
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=80.54 E-value=1.7 Score=27.34 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=22.6
Q ss_pred ccEEEeecCCCCCCcceeEEeeccccC
Q psy10521 17 GDLYVFNATPNDGYKSYRCRTVNKITG 43 (66)
Q Consensus 17 GeL~I~nv~~~D~~~~Y~C~~~~~lTg 43 (66)
.+|.+..+..+|+ |.|.|++.|..-.
T Consensus 65 S~L~L~Rlk~~E~-G~YTf~a~N~~~~ 90 (101)
T cd05860 65 SELHLTRLKGTEG-GTYTFLVSNSDAS 90 (101)
T ss_pred EEEEEeecChhhC-cEEEEEEECCCCe
Confidence 5799999999996 9999999998643
No 165
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=78.14 E-value=5.5 Score=23.13 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=15.7
Q ss_pred cCCCCCCcceeEEeeccccCc
Q psy10521 24 ATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 24 v~~~D~~~~Y~C~~~~~lTge 44 (66)
+..+|....|.|++.|+--.+
T Consensus 52 ~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 52 VTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred ecchhCCCEEEEEEECcccCC
Confidence 555665699999999986444
No 166
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=77.20 E-value=2.5 Score=25.44 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=19.4
Q ss_pred cEEEeecCCCCCCcceeEEeecccc
Q psy10521 18 DLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 18 eL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
.|.+ .+..||....|+|++.|+.=
T Consensus 45 ~L~~-~p~~eDdG~~~~C~a~~~~l 68 (82)
T cd05883 45 QLML-KVTKEDDGVPVICLVDHPAV 68 (82)
T ss_pred EEEE-ECchhhCCCEEEEEEcCccc
Confidence 3444 78889888999999999864
No 167
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=74.94 E-value=6.5 Score=22.99 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=16.4
Q ss_pred EEEeecCCCCCCcceeEEeeccccCc
Q psy10521 19 LYVFNATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 19 L~I~nv~~~D~~~~Y~C~~~~~lTge 44 (66)
|.|. .+.+|....|+|++.|+--..
T Consensus 48 L~~~-~~~~d~g~~ytC~v~h~~l~~ 72 (83)
T cd05884 48 LDFR-VDRSDDGVAIICRVDHESLNA 72 (83)
T ss_pred EEEE-cccccCCCEEEEEEechhcCC
Confidence 4443 344455689999999985543
No 168
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=74.82 E-value=5.4 Score=24.75 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=14.5
Q ss_pred EEEeecCCCCCCcceeEEeeccc
Q psy10521 19 LYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 19 L~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
|-|. .+.+|....|.|++.|+-
T Consensus 110 L~v~-~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 110 LTLE-PGTEDAGATYTCRVSHVS 131 (139)
T ss_pred EEec-CCccCCCCEEEEEEEcCC
Confidence 4443 344454579999999963
No 169
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=73.13 E-value=3.6 Score=25.51 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=21.0
Q ss_pred CccCCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521 5 DFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 5 ~~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
.+.+|.|.+ +..|-|.-=+|+- ...|.|++.|+-
T Consensus 56 ~~~dgTys~--~S~L~v~~~~W~~-g~~ytC~V~H~~ 89 (99)
T cd04986 56 SDQCGCYSV--SSVLPGCAEEWNK-GEPFACTVTHPE 89 (99)
T ss_pred cCCCCCEEE--EEEEEeCHHHhcC-CCeEEEEEECCC
Confidence 345677777 3445444334443 367999999974
No 170
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=71.93 E-value=4.4 Score=24.49 Aligned_cols=10 Identities=10% Similarity=0.780 Sum_probs=9.1
Q ss_pred cceeEEeecc
Q psy10521 31 KSYRCRTVNK 40 (66)
Q Consensus 31 ~~Y~C~~~~~ 40 (66)
..|.|.+.|.
T Consensus 76 ~~ysC~V~H~ 85 (96)
T cd07696 76 DTFQCKVTHP 85 (96)
T ss_pred CcEEEEEECC
Confidence 6899999997
No 171
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=71.49 E-value=4.7 Score=24.27 Aligned_cols=12 Identities=25% Similarity=0.575 Sum_probs=9.9
Q ss_pred CcceeEEeeccc
Q psy10521 30 YKSYRCRTVNKI 41 (66)
Q Consensus 30 ~~~Y~C~~~~~l 41 (66)
...|.|++.|.-
T Consensus 75 ~~~ytC~V~H~~ 86 (94)
T cd05847 75 GKTYTCKVTHQG 86 (94)
T ss_pred CCeEEEEEEECC
Confidence 379999999973
No 172
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=68.89 E-value=5.2 Score=24.09 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=17.8
Q ss_pred CCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
+|-|.+ ...|-|.--.|.+ ...|.|++.|+-
T Consensus 59 dgty~~--~s~L~v~~~~w~~-~~~~sC~V~H~~ 89 (100)
T cd07699 59 DNTYSL--SSYLTLTKSDWNK-HKVYTCEVTHEG 89 (100)
T ss_pred CCCEEE--EEEEEEcHHHhCC-CCeEEEEEEecC
Confidence 444544 2334343333333 479999999974
No 173
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=64.85 E-value=7.5 Score=22.75 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=13.9
Q ss_pred eecCCCCCCcceeEEeeccc
Q psy10521 22 FNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 22 ~nv~~~D~~~~Y~C~~~~~l 41 (66)
..|..+|+ ..|.|++.|.-
T Consensus 65 l~v~~~~~-~~ytC~V~H~~ 83 (93)
T cd07698 65 LEVPPEDK-ARYSCRVEHSG 83 (93)
T ss_pred EEECCCCC-CEEEEEEEeCC
Confidence 44555564 89999999973
No 174
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=64.15 E-value=17 Score=21.92 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=11.8
Q ss_pred cCCCCCCcceeEEeecc
Q psy10521 24 ATPNDGYKSYRCRTVNK 40 (66)
Q Consensus 24 v~~~D~~~~Y~C~~~~~ 40 (66)
+.+++ ...|.|++.|.
T Consensus 67 ~~~~~-~~~ysC~V~H~ 82 (93)
T cd05770 67 FTPTK-GDEYACRVRHN 82 (93)
T ss_pred ECCCC-CCeEEEEEEEC
Confidence 34555 37899999996
No 175
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=62.24 E-value=9.8 Score=21.52 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=18.1
Q ss_pred eecCCCCCCcceeEEeeccccCc
Q psy10521 22 FNATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 22 ~nv~~~D~~~~Y~C~~~~~lTge 44 (66)
..++++|....++|++.|+...+
T Consensus 65 ~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 65 LTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp EETTGGGTTEEEEEEEEETTCCE
T ss_pred EEcChHHCCeEEEEEEECCccCC
Confidence 35677777899999999987654
No 176
>PHA03282 envelope glycoprotein E; Provisional
Probab=58.23 E-value=31 Score=27.67 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=29.3
Q ss_pred ccCccCCeEEEeecccEEEeecCCCCCCcceeEEeeccccCcE
Q psy10521 3 SDDFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGES 45 (66)
Q Consensus 3 ps~~~~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~ 45 (66)
|...+..|..+ -+|.|.|++++.+|. |.|.-.+.+.-+.+.
T Consensus 111 ~e~~~~~rvs~-~n~tl~l~~a~~~Ds-G~Y~L~~~~~~~~~~ 151 (540)
T PHA03282 111 PEFAWPPRVAV-VNGTLVLREARETDS-GMYVLSVSRAPNSTA 151 (540)
T ss_pred cccccCcceeE-ecceEEEeeccccCC-ceEEEEecCCCCchh
Confidence 44555444444 599999999999996 999988655544444
No 177
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=57.34 E-value=6.3 Score=25.41 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.4
Q ss_pred ccEEEeecCCCCCCcceeEEe
Q psy10521 17 GDLYVFNATPNDGYKSYRCRT 37 (66)
Q Consensus 17 GeL~I~nv~~~D~~~~Y~C~~ 37 (66)
=.|.|.|++.||. ..|.|..
T Consensus 74 v~L~l~~L~a~DT-a~Y~Ca~ 93 (115)
T cd05721 74 VNFTLQNLRANQT-DIYFCKI 93 (115)
T ss_pred EEEEEcCCCHHHC-eEEEEEe
Confidence 4699999999996 9999964
No 178
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=55.42 E-value=23 Score=21.04 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=11.8
Q ss_pred cCCCCCCcceeEEeeccc
Q psy10521 24 ATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 24 v~~~D~~~~Y~C~~~~~l 41 (66)
+..++ ...|.|++.|.-
T Consensus 67 ~~~~~-~~~ysC~V~H~~ 83 (94)
T cd05766 67 TTPSR-GDTYTCVVEHSS 83 (94)
T ss_pred EcCCC-CCEEEEEEEeCC
Confidence 33444 368999999973
No 179
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=54.92 E-value=14 Score=23.28 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=19.4
Q ss_pred CeEEEeecccEEEeecCCCCCCcceeEEeeccccCc
Q psy10521 9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge 44 (66)
|-|.+ +--|-|.-.+|.|....|.|++.|.--.+
T Consensus 62 gTYs~--~S~L~v~~~~w~~~~~~ytC~V~H~g~~~ 95 (115)
T cd05769 62 STYSI--SSRLRVSATEWFNPRNTFTCIVQFYGGTD 95 (115)
T ss_pred CeEEE--EEEEEEChHHhccCCCeEEEEEEEeCCcc
Confidence 44554 22344444344343479999999984433
No 180
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=51.00 E-value=16 Score=22.09 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=14.7
Q ss_pred CCCCCcceeEEeecccc
Q psy10521 26 PNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 26 ~~D~~~~Y~C~~~~~lT 42 (66)
.||-...|-|+++|+=|
T Consensus 58 kED~stDYAcIa~~kpt 74 (74)
T PF05083_consen 58 KEDPSTDYACIAKNKPT 74 (74)
T ss_pred ccCCCcCeeeeeccCCC
Confidence 88988899999999754
No 181
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=50.67 E-value=20 Score=21.57 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=17.2
Q ss_pred CCeEEEeecccEEEeecCCCCCCcceeEEeeccc
Q psy10521 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 8 ~~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
+|.|.+.. -|-|.--+|. ....|.|++.|.-
T Consensus 57 dgty~~~s--~L~v~~~~w~-~~~~ytC~V~H~~ 87 (95)
T cd04985 57 GGLYTASS--QLTVPASEWK-GKESFYCKVEHPS 87 (95)
T ss_pred CCCEEEEE--EEEEeHHHcC-CCCcEEEEEEeCC
Confidence 56666532 2223332332 2368999999973
No 182
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=50.05 E-value=54 Score=27.97 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=42.8
Q ss_pred CCccCccCCeEEEe---ecc-----cEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEE
Q psy10521 1 MTSDDFVGGKYVVL---SSG-----DLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSI 56 (66)
Q Consensus 1 ~~ps~~~~~ry~il---psG-----eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v 56 (66)
|-|.+..+||++.. ..| +|||+|+..+.. +..+-.+.+.-.=.+++...+..+||
T Consensus 353 ~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~-~~vkl~ve~aaiprwrv~e~gdt~iv 415 (912)
T TIGR02171 353 YHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGS-GLVKLPVENAAIPRWRVLENGDTVIV 415 (912)
T ss_pred ecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCC-CceEeecccccccceEecCCCCeEEE
Confidence 45888999999987 334 699999999985 88998888888878887664555544
No 183
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=46.06 E-value=45 Score=20.02 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=9.4
Q ss_pred CcceeEEeecc
Q psy10521 30 YKSYRCRTVNK 40 (66)
Q Consensus 30 ~~~Y~C~~~~~ 40 (66)
...|.|++.|.
T Consensus 73 ~~~ytC~V~H~ 83 (94)
T cd05767 73 GDIYSCIVEHW 83 (94)
T ss_pred CCeEEEEEEeC
Confidence 36999999997
No 184
>KOG2278|consensus
Probab=45.81 E-value=20 Score=25.41 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=16.2
Q ss_pred ccCCeEEE-eecccEEEeecCC
Q psy10521 6 FVGGKYVV-LSSGDLYVFNATP 26 (66)
Q Consensus 6 ~~~~ry~i-lpsGeL~I~nv~~ 26 (66)
|...||.+ ++.|+|+||..|-
T Consensus 63 ndKqRF~l~d~~~el~IrAnQG 84 (207)
T KOG2278|consen 63 NDKQRFSLIDEAGELLIRANQG 84 (207)
T ss_pred cccceEEeecCCCcEEEEecCC
Confidence 44578888 5899999997653
No 185
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=45.39 E-value=38 Score=23.25 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=28.6
Q ss_pred eEE-EeecccEEEeecCCCCCCcceeEEeecccc
Q psy10521 10 KYV-VLSSGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 10 ry~-ilpsGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
||- |.|.-+|+||.-...|..+.|-|...|.-+
T Consensus 90 rfr~miP~~alQVR~~n~ad~e~~~vwEliH~kS 123 (160)
T cd01255 90 RFRVLIPVTALQVRASSAADMESNFLWELIHLKS 123 (160)
T ss_pred eEEEeeceeeeeeecCCCcCcccceEEEEEeecc
Confidence 565 679999999999999999999999988643
No 186
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=43.91 E-value=85 Score=21.48 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=32.2
Q ss_pred CCeEEEeecccEEEeecCCCCC---CcceeEEeeccccCcEEecccceeEEEecccccc
Q psy10521 8 GGKYVVLSSGDLYVFNATPNDG---YKSYRCRTVNKITGESQASVFQTRLSITGFRAVY 63 (66)
Q Consensus 8 ~~ry~ilpsGeL~I~nv~~~D~---~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~~~ 63 (66)
+.|.+.+|+|.-.|+-.+..-. -++.+|.-.+ =..|++- ..|||.+++..|.+
T Consensus 119 G~k~i~~pnGq~ei~t~~~krreyPDGTvk~vy~d-G~qet~y--~~gr~r~kd~~g~~ 174 (179)
T PF07202_consen 119 GDKTITFPNGQKEIHTADFKRREYPDGTVKTVYPD-GRQETRY--ASGRVRIKDKDGNV 174 (179)
T ss_pred CcEEEEeCCCcEEEEccccEEEEcCCCCEEEEecC-CCEEEEe--CCCcEEEecCCCCE
Confidence 5677778888877765433210 1466666665 2334443 36799998877754
No 187
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=42.15 E-value=17 Score=22.08 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=15.4
Q ss_pred ecCCCCCCcceeEEeeccc
Q psy10521 23 NATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 23 nv~~~D~~~~Y~C~~~~~l 41 (66)
-...+|..+.|.|++.|+-
T Consensus 64 ~P~~~d~Gk~ltC~v~h~a 82 (95)
T cd07703 64 VPTPEANGKEVTCKVEHET 82 (95)
T ss_pred ecCHHHCCCEEEEEEeCcc
Confidence 4567777799999999984
No 188
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=41.83 E-value=18 Score=22.35 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=15.7
Q ss_pred cCCCCCCcceeEEeecccc
Q psy10521 24 ATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 24 v~~~D~~~~Y~C~~~~~lT 42 (66)
+..+|....|+|++.+.+-
T Consensus 68 ~~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 68 VDREDHGANFSCETELDLR 86 (100)
T ss_pred cchhhCCcEEEEEEEeccC
Confidence 6778878899999997753
No 189
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=40.55 E-value=24 Score=21.43 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=11.8
Q ss_pred ecCCCCCCcceeEEeecc
Q psy10521 23 NATPNDGYKSYRCRTVNK 40 (66)
Q Consensus 23 nv~~~D~~~~Y~C~~~~~ 40 (66)
.+.+++....|.|++.|.
T Consensus 67 ~vt~~~~~~~ysC~V~H~ 84 (96)
T cd07697 67 TVTKDSLGKKFRCIYKHE 84 (96)
T ss_pred EECchhCCCeEEEEEEEC
Confidence 344443335699999995
No 190
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=39.91 E-value=30 Score=20.92 Aligned_cols=11 Identities=9% Similarity=0.274 Sum_probs=9.4
Q ss_pred CcceeEEeecc
Q psy10521 30 YKSYRCRTVNK 40 (66)
Q Consensus 30 ~~~Y~C~~~~~ 40 (66)
...|.|++.|.
T Consensus 80 ~~~ytC~V~H~ 90 (102)
T cd05768 80 GDVFTCVVGHE 90 (102)
T ss_pred CCcEEEEeEeC
Confidence 36899999997
No 191
>PF04296 DUF448: Protein of unknown function (DUF448); InterPro: IPR007393 This entry represents a group of uncharacterised proteins. Some member sequences retain zinc-binding residues. The structure of the hypothetical cytosolic protein SP0554 from Streptococcus pneumoniae revealed an alpha+beta fold that could have evolved from a glucocorticoid receptor-like zinc finger domain [].; PDB: 1G2R_A.
Probab=39.66 E-value=32 Score=20.13 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=17.0
Q ss_pred eEEEeecccEEEeecCCCCCCcceeEEee
Q psy10521 10 KYVVLSSGDLYVFNATPNDGYKSYRCRTV 38 (66)
Q Consensus 10 ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~ 38 (66)
|+...++|++.+---....+.|.|-|.-.
T Consensus 18 R~v~~~~~~i~~D~~~k~~GRGaYvc~~~ 46 (78)
T PF04296_consen 18 RFVRTPDGEIVPDPSGKLPGRGAYVCPDP 46 (78)
T ss_dssp EEEE-TTS-EEEETTS---SEEEEEES-H
T ss_pred EEEEeCCCEEEECCCCCCCCCeEEEcCCH
Confidence 67788888866665555667789999764
No 192
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=39.57 E-value=30 Score=20.81 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=17.3
Q ss_pred ecCCCCCCcceeEEeeccccCc
Q psy10521 23 NATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 23 nv~~~D~~~~Y~C~~~~~lTge 44 (66)
...++|.-..|.|++.|+-..+
T Consensus 64 ~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 64 VPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred ecCHHHCCCEEEEEEeCcccCC
Confidence 5567777799999999986544
No 193
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=38.00 E-value=25 Score=16.56 Aligned_cols=11 Identities=45% Similarity=0.751 Sum_probs=8.9
Q ss_pred EeecccEEEee
Q psy10521 13 VLSSGDLYVFN 23 (66)
Q Consensus 13 ilpsGeL~I~n 23 (66)
+.++|+|+|.+
T Consensus 9 v~~~g~i~VaD 19 (28)
T PF01436_consen 9 VDSDGNIYVAD 19 (28)
T ss_dssp EETTSEEEEEE
T ss_pred EeCCCCEEEEE
Confidence 45889999988
No 194
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=37.53 E-value=21 Score=25.35 Aligned_cols=12 Identities=33% Similarity=0.492 Sum_probs=10.6
Q ss_pred EEeecccEEEee
Q psy10521 12 VVLSSGDLYVFN 23 (66)
Q Consensus 12 ~ilpsGeL~I~n 23 (66)
.++|+|+|.|+.
T Consensus 152 ~VlpNGNLvI~G 163 (230)
T PRK12700 152 GVLPNGNLQIAG 163 (230)
T ss_pred EECCCCCEEEEE
Confidence 478999999987
No 195
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=37.39 E-value=21 Score=25.20 Aligned_cols=12 Identities=33% Similarity=0.393 Sum_probs=10.5
Q ss_pred EEeecccEEEee
Q psy10521 12 VVLSSGDLYVFN 23 (66)
Q Consensus 12 ~ilpsGeL~I~n 23 (66)
.++|+|+|.|+.
T Consensus 142 ~VlpNGnL~I~G 153 (221)
T PRK12407 142 QVLPNGVLVIRG 153 (221)
T ss_pred EECCCCCEEEEE
Confidence 468999999987
No 196
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=36.67 E-value=29 Score=21.48 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=12.4
Q ss_pred cCCCCCCcceeEEeeccc
Q psy10521 24 ATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 24 v~~~D~~~~Y~C~~~~~l 41 (66)
.+.+|....|.|++.|.-
T Consensus 75 ~~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 75 LTEDDVHSQVTCEVQHRT 92 (111)
T ss_pred CccccccCceEEEEEeCC
Confidence 344444467999999973
No 197
>KOG3515|consensus
Probab=36.46 E-value=27 Score=28.97 Aligned_cols=34 Identities=29% Similarity=0.278 Sum_probs=29.4
Q ss_pred cCCeEEEeecccEE-EeecCCCCCCcceeEEeeccc
Q psy10521 7 VGGKYVVLSSGDLY-VFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 7 ~~~ry~ilpsGeL~-I~nv~~~D~~~~Y~C~~~~~l 41 (66)
.++.+.+.++|-|. +.||+..|. +.|.|.+.|--
T Consensus 447 ~g~~~~v~~~~~~~s~~~v~~~d~-g~y~~tatns~ 481 (741)
T KOG3515|consen 447 DGGVVRVGAGAGLGSGVNVSRSDG-GSYGLTATNSP 481 (741)
T ss_pred cCceEEeeccccccccceeeeccC-CcceeeeccCC
Confidence 46788999999998 999999996 99999998653
No 198
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=35.85 E-value=24 Score=25.14 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=10.6
Q ss_pred EEeecccEEEee
Q psy10521 12 VVLSSGDLYVFN 23 (66)
Q Consensus 12 ~ilpsGeL~I~n 23 (66)
.+||+|+|+|+.
T Consensus 151 ~VlpNGnL~I~G 162 (230)
T PRK12701 151 KVLANGNMVVQG 162 (230)
T ss_pred EECCCCCEEEEE
Confidence 478999999987
No 199
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=35.77 E-value=1.2e+02 Score=19.58 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=33.8
Q ss_pred CCccCccCCeEEEee---------cccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEec
Q psy10521 1 MTSDDFVGGKYVVLS---------SGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITG 58 (66)
Q Consensus 1 ~~ps~~~~~ry~ilp---------sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~e 58 (66)
|.|++..++..++.. .|++.+.....+. +.+.|.-.-.+-|++..-. .++|.|+.
T Consensus 30 M~Ptl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~~~~~--~~~~iKRVig~pGd~v~i~-~~~l~vNg 93 (163)
T TIGR02227 30 MEPTLKEGDRILVNKFAYGTSDPKRGDIVVFKDPDDN--KNIYVKRVIGLPGDKVEFR-DGKLYING 93 (163)
T ss_pred cccchhCCCEEEEEEeEcCCCCCCCCcEEEEecCCCC--CceeEEEEEecCCCEEEEE-CCEEEECC
Confidence 778888777666643 4888888764332 3344444445567776654 55666653
No 200
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=34.62 E-value=1.2e+02 Score=20.11 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=25.4
Q ss_pred CccCCeEEEee-----cccEEEeecCCCCCCcceeEEeeccccCcEEecc
Q psy10521 5 DFVGGKYVVLS-----SGDLYVFNATPNDGYKSYRCRTVNKITGESQASV 49 (66)
Q Consensus 5 ~~~~~ry~ilp-----sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~ 49 (66)
+.+.|+|+++. +|+|.|-|++... -.+...|..+....-|+
T Consensus 108 wsP~G~~l~~~g~~n~~G~l~~wd~~~~~----~i~~~~~~~~t~~~WsP 153 (194)
T PF08662_consen 108 WSPDGRFLVLAGFGNLNGDLEFWDVRKKK----KISTFEHSDATDVEWSP 153 (194)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCE----EeeccccCcEEEEEEcC
Confidence 35689999975 5789999988422 23333444444444465
No 201
>KOG3260|consensus
Probab=33.76 E-value=25 Score=25.10 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=18.4
Q ss_pred cccEEEeecCCCCCCcceeEEeecccc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
|=+|+|+|++- .+|+|++-|-+-
T Consensus 108 Sldl~v~dlqG----K~y~~~vnnLlk 130 (224)
T KOG3260|consen 108 SLDLKVHDLQG----KNYRMIVNNLLK 130 (224)
T ss_pred ceeeeeeecCC----cceeeehhhhcc
Confidence 67899999987 679999876443
No 202
>COG2063 FlgH Flagellar basal body L-ring protein [Cell motility and secretion]
Probab=33.51 E-value=27 Score=25.14 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=10.7
Q ss_pred EEeecccEEEee
Q psy10521 12 VVLSSGDLYVFN 23 (66)
Q Consensus 12 ~ilpsGeL~I~n 23 (66)
.|||+|+|+|+.
T Consensus 155 ~VLpNGNL~I~G 166 (230)
T COG2063 155 QVLPNGNLVIEG 166 (230)
T ss_pred EEcCCCCEEEEE
Confidence 478999999997
No 203
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=33.39 E-value=55 Score=21.07 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=26.3
Q ss_pred CeEEEee-cccEEEeecCCCCCCcceeEEeeccccCcEE
Q psy10521 9 GKYVVLS-SGDLYVFNATPNDGYKSYRCRTVNKITGESQ 46 (66)
Q Consensus 9 ~ry~ilp-sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~ 46 (66)
.||...+ +..|.|..++.+|. |.|.-.+.+ -+|.+.
T Consensus 62 ~r~~F~~enlaLlIkaAq~qDS-G~Y~LEvT~-~sG~V~ 98 (108)
T PF11465_consen 62 NRFNFTSENLALLIKAAQPQDS-GLYCLEVTN-ESGKVC 98 (108)
T ss_dssp HHEEEETTTTEEEESS-SGGG--EEEEEEEEE-TTSCEE
T ss_pred ceEeeeccCceEEEeecCcccC-ceEEEEEEc-CCCcEE
Confidence 4666654 89999999999996 888777766 566654
No 204
>PF09466 Yqai: Hypothetical protein Yqai; InterPro: IPR018474 The hypothetical protein YqaI is expressed in bacteria, particularly Bacillus subtilis. It forms a homo-dimer, with each monomer containing an alpha helix and four beta strands.; PDB: 2DSM_B.
Probab=33.15 E-value=43 Score=20.11 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=13.7
Q ss_pred CccCCeEEEeecccEEEee
Q psy10521 5 DFVGGKYVVLSSGDLYVFN 23 (66)
Q Consensus 5 ~~~~~ry~ilpsGeL~I~n 23 (66)
+.++..|++.|+|+...++
T Consensus 34 I~~~D~y~i~~~geIvL~e 52 (71)
T PF09466_consen 34 IFPGDDYFISPDGEIVLEE 52 (71)
T ss_dssp B-TTS-EEE-ETTEEEECC
T ss_pred cccCCeEEEeCCCcEEehh
Confidence 4568899999999998876
No 205
>PRK12697 flgH flagellar basal body L-ring protein; Reviewed
Probab=33.05 E-value=28 Score=24.80 Aligned_cols=12 Identities=42% Similarity=0.534 Sum_probs=10.6
Q ss_pred EEeecccEEEee
Q psy10521 12 VVLSSGDLYVFN 23 (66)
Q Consensus 12 ~ilpsGeL~I~n 23 (66)
.++|+|+|.|+.
T Consensus 148 ~VlpNGnL~I~G 159 (226)
T PRK12697 148 NVLPNGNLVVSG 159 (226)
T ss_pred EECCCCCEEEEE
Confidence 468999999987
No 206
>cd00279 YlxR Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation
Probab=32.56 E-value=63 Score=19.18 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=19.9
Q ss_pred eEEEeecccEEEeecCCCCCCcceeEEee
Q psy10521 10 KYVVLSSGDLYVFNATPNDGYKSYRCRTV 38 (66)
Q Consensus 10 ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~ 38 (66)
|+...|.|++.+---....+.|.|-|...
T Consensus 19 R~v~~~~g~i~~D~~~k~~GRGaYvc~~~ 47 (79)
T cd00279 19 RFVAGPEGEVVPDPTGKLPGRGAYVCADR 47 (79)
T ss_pred EEEEcCCCeEEECCCCCCCCCeEEEcCCH
Confidence 56677778766544444567889999764
No 207
>KOG4597|consensus
Probab=32.54 E-value=30 Score=27.89 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=27.2
Q ss_pred CeEEEeecccEEEeecCCCCCCcceeEEeecc
Q psy10521 9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNK 40 (66)
Q Consensus 9 ~ry~ilpsGeL~I~nv~~~D~~~~Y~C~~~~~ 40 (66)
+|-.+...+.|.|.|...+|+ +-|.|.+++-
T Consensus 249 e~p~vtstcql~ic~ewq~~a-~w~tCs~rcg 279 (560)
T KOG4597|consen 249 ENPVVTSTCQLVICNEWQADA-GWYTCSARCG 279 (560)
T ss_pred CCcceeeeeeEEEcchhhcCC-Cceeeccccc
Confidence 566778899999999999996 8999999974
No 208
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=32.42 E-value=29 Score=24.84 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=10.6
Q ss_pred EEeecccEEEee
Q psy10521 12 VVLSSGDLYVFN 23 (66)
Q Consensus 12 ~ilpsGeL~I~n 23 (66)
.++|+|+|.|..
T Consensus 156 ~VLPNGNLvI~G 167 (234)
T PRK12788 156 DVLPNGNLLISG 167 (234)
T ss_pred EEcCCCCEEEEE
Confidence 468999999987
No 209
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=32.35 E-value=54 Score=20.61 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=16.6
Q ss_pred EEeecCCCCCCcceeEEeecccc
Q psy10521 20 YVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 20 ~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
.-..+..||..+.|.|+|.=.+-
T Consensus 65 vtftptreD~g~~fsC~A~L~l~ 87 (99)
T cd07689 65 VTFTPTIEDIGKVLVCRAKLHID 87 (99)
T ss_pred EEEecchhhCCcEEEEEEEEeec
Confidence 33445688988899999975443
No 210
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=31.94 E-value=36 Score=27.01 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=14.7
Q ss_pred EEeecCCCCCCcceeEEee
Q psy10521 20 YVFNATPNDGYKSYRCRTV 38 (66)
Q Consensus 20 ~I~nv~~~D~~~~Y~C~~~ 38 (66)
-+.|++..| .|.|||.+.
T Consensus 84 ~~~Nvs~sd-EGrYrCIFY 101 (500)
T PHA02914 84 IEENIGEHE-DGDFKCIFY 101 (500)
T ss_pred EecCccccc-CCcEEEEEE
Confidence 456788888 599999997
No 211
>PRK00249 flgH flagellar basal body L-ring protein; Reviewed
Probab=31.83 E-value=30 Score=24.35 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=10.4
Q ss_pred EEeecccEEEee
Q psy10521 12 VVLSSGDLYVFN 23 (66)
Q Consensus 12 ~ilpsGeL~I~n 23 (66)
.++|+|+|.|+.
T Consensus 144 ~VlpNGnLvI~G 155 (222)
T PRK00249 144 QVLPNGNLVIRG 155 (222)
T ss_pred EECCCCcEEEEE
Confidence 468999999987
No 212
>PF02107 FlgH: Flagellar L-ring protein; InterPro: IPR000527 The flgH, flgI and fliF genes of Salmonella typhimurium encode the major proteins for the L, P and M rings of the flagellar basal body []. In fact, the basal body consists of four rings (L,P,S and M) surrounding the flagellar rod, which is believed to transmit motor rotation to the filament []. The M ring is integral to the inner membrane of the cell, and may be connected to the rod via the S (supramembrane) ring, which lies just distal to it. The L and P rings reside in the outer membrane and periplasmic space, respectively. FlgH and FlgI, which are exported across the cell membrane to their destinations in the outer membrane and periplasmic space, have typical N-terminal cleaved signal-peptide sequences. FlgH is predicted to have an extensive beta-sheet structure, in keeping with other outer membrane proteins [].; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0009427 bacterial-type flagellum basal body, distal rod, L ring
Probab=31.21 E-value=31 Score=23.27 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=10.2
Q ss_pred EEeecccEEEee
Q psy10521 12 VVLSSGDLYVFN 23 (66)
Q Consensus 12 ~ilpsGeL~I~n 23 (66)
.++|+|.|.|..
T Consensus 102 ~VlpNGnL~I~G 113 (179)
T PF02107_consen 102 EVLPNGNLVIEG 113 (179)
T ss_pred EECCCCcEEEEE
Confidence 368999999986
No 213
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=31.03 E-value=32 Score=24.33 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=10.5
Q ss_pred EEeecccEEEee
Q psy10521 12 VVLSSGDLYVFN 23 (66)
Q Consensus 12 ~ilpsGeL~I~n 23 (66)
.++|+|+|.|+.
T Consensus 145 ~VlpNGnL~I~G 156 (224)
T PRK12698 145 QVLPNGNLVIRG 156 (224)
T ss_pred EECCCCCEEEEE
Confidence 468999999987
No 214
>PRK12699 flgH flagellar basal body L-ring protein; Reviewed
Probab=30.89 E-value=32 Score=24.82 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=10.6
Q ss_pred EEeecccEEEee
Q psy10521 12 VVLSSGDLYVFN 23 (66)
Q Consensus 12 ~ilpsGeL~I~n 23 (66)
.++|+|+|.|+.
T Consensus 169 ~VLPNGNLvI~G 180 (246)
T PRK12699 169 DILPNGNLLVSG 180 (246)
T ss_pred EECCCCCEEEEE
Confidence 578999999987
No 215
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=30.67 E-value=96 Score=20.62 Aligned_cols=29 Identities=7% Similarity=0.257 Sum_probs=18.2
Q ss_pred CeEEEee--cccEEEeecCCCCCCcceeEEeeccccC
Q psy10521 9 GKYVVLS--SGDLYVFNATPNDGYKSYRCRTVNKITG 43 (66)
Q Consensus 9 ~ry~ilp--sGeL~I~nv~~~D~~~~Y~C~~~~~lTg 43 (66)
..|.++| +|..+|+++... +|...+...+
T Consensus 85 q~F~iiPtttgAVQIks~~~~------~Cl~~~~~~~ 115 (150)
T PF03498_consen 85 QVFSIIPTTTGAVQIKSLSTG------ECLQTFNNSR 115 (150)
T ss_dssp H-EEEEEBTTS-EEEEETTT--------EEEE-STTS
T ss_pred ceEEEEEcCCCcEEEEecCCC------ceEEecCCCc
Confidence 4567766 999999996653 7888766554
No 216
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=30.65 E-value=32 Score=24.52 Aligned_cols=12 Identities=33% Similarity=0.274 Sum_probs=10.6
Q ss_pred EEeecccEEEee
Q psy10521 12 VVLSSGDLYVFN 23 (66)
Q Consensus 12 ~ilpsGeL~I~n 23 (66)
.++|+|+|.|..
T Consensus 158 ~VLPNGNLvI~G 169 (236)
T PRK12696 158 RVLPGGLMQVEG 169 (236)
T ss_pred EECCCCCEEEEE
Confidence 478999999987
No 217
>COG1471 RPS4A Ribosomal protein S4E [Translation, ribosomal structure and biogenesis]
Probab=29.60 E-value=2e+02 Score=21.02 Aligned_cols=51 Identities=25% Similarity=0.427 Sum_probs=36.1
Q ss_pred CCeEEEee--cccEEEeecCCCCCCcceeEEeecccc---CcEEeccccee-EEEecc
Q psy10521 8 GGKYVVLS--SGDLYVFNATPNDGYKSYRCRTVNKIT---GESQASVFQTR-LSITGF 59 (66)
Q Consensus 8 ~~ry~ilp--sGeL~I~nv~~~D~~~~Y~C~~~~~lT---ge~~~S~~~~~-l~v~ep 59 (66)
+..|=++| .|-|..+-++.|.+ +.=-|++.|+.+ |..+...+.|+ +.+.++
T Consensus 95 gE~yRvl~d~~grl~l~~is~EeA-~~Kl~kV~nKt~vkgG~~QLn~hDGrni~~~d~ 151 (241)
T COG1471 95 GEHYRVLPDEKGRLVLHPISAEEA-SYKLCKVKNKTTVKGGRIQLNLHDGRNIRLEDD 151 (241)
T ss_pred CceEEEEecCCccEEEEecChhhc-cceEEEEEeEEEecCCEEEEEecCCceeeccCC
Confidence 55677776 79999999998775 334599999988 55665555555 666553
No 218
>PF04571 Lipin_N: lipin, N-terminal conserved region; InterPro: IPR007651 Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. This entry represents a conserved domain found at the N terminus of the member proteins [, ].
Probab=28.96 E-value=70 Score=20.62 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=25.8
Q ss_pred cccEEEeecCCCCCCcceeEEeeccccCcEEec
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQAS 48 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S 48 (66)
+|..=|.=|+..| ++|+|...|--=|.++.-
T Consensus 25 SGAiDVIVV~q~D--Gs~~sSPFhVRFGk~~vl 55 (110)
T PF04571_consen 25 SGAIDVIVVEQPD--GSLKSSPFHVRFGKLGVL 55 (110)
T ss_pred cCceeEEEEecCC--CCEecCccEEEEcceeee
Confidence 8888899999999 599999998777776653
No 219
>KOG1417|consensus
Probab=28.49 E-value=50 Score=25.50 Aligned_cols=18 Identities=17% Similarity=0.580 Sum_probs=15.6
Q ss_pred ccCCeEEEee-cccEEEee
Q psy10521 6 FVGGKYVVLS-SGDLYVFN 23 (66)
Q Consensus 6 ~~~~ry~ilp-sGeL~I~n 23 (66)
+++|.|+|.| .|.|.|.-
T Consensus 152 NsDGDFLiVPQ~G~L~I~T 170 (446)
T KOG1417|consen 152 NSDGDFLIVPQQGRLWITT 170 (446)
T ss_pred cCCCCEEEecccCcEEEEe
Confidence 6799999998 89999864
No 220
>PRK10626 hypothetical protein; Provisional
Probab=28.45 E-value=42 Score=24.24 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=14.0
Q ss_pred CCeEEEeecccEEEee
Q psy10521 8 GGKYVVLSSGDLYVFN 23 (66)
Q Consensus 8 ~~ry~ilpsGeL~I~n 23 (66)
.|+|.|.|+|+|+|.+
T Consensus 45 sg~l~I~~dg~L~inG 60 (239)
T PRK10626 45 SGNLVISPDGNVMRNG 60 (239)
T ss_pred CCceEEcCCCCEEECC
Confidence 5689999999999976
No 221
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=28.38 E-value=42 Score=18.42 Aligned_cols=20 Identities=10% Similarity=0.205 Sum_probs=16.9
Q ss_pred CeEEEeecccEEEeecCCCC
Q psy10521 9 GKYVVLSSGDLYVFNATPND 28 (66)
Q Consensus 9 ~ry~ilpsGeL~I~nv~~~D 28 (66)
+...+.+..+|+|++|..++
T Consensus 39 ~~irlT~~Q~l~l~~v~~~~ 58 (69)
T PF03460_consen 39 GEIRLTTRQNLQLRGVPEEN 58 (69)
T ss_dssp SEEEEETTSCEEEEEEEGGG
T ss_pred CeEEECCCCeEEEeCCCHHH
Confidence 67777889999999998876
No 222
>PF03287 Pox_C7_F8A: Poxvirus C7/F8A protein; InterPro: IPR004967 This family includes Poxvirus C7 and F8A proteins.; GO: 0016032 viral reproduction
Probab=27.40 E-value=2e+02 Score=19.53 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=37.1
Q ss_pred eEEE-eecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEecccccc
Q psy10521 10 KYVV-LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAVY 63 (66)
Q Consensus 10 ry~i-lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~~~ 63 (66)
++.+ +-+.+|=|+||+--.+ -+|=|...=+.++.-+.. -+.|.+|.|+.
T Consensus 6 e~dIfiVde~ialkn~~L~kG-dsYGC~I~lk~~~~K~i~----f~~Il~pdwse 55 (149)
T PF03287_consen 6 ELDIFIVDENIALKNVELHKG-DSYGCTIKLKSKETKKIN----FIFILRPDWSE 55 (149)
T ss_pred EEEEEEEeCceeeceeecccC-cccCEEEEEEeCCccEEE----EEEEEccChhh
Confidence 4556 5699999999998875 799999988877766554 46666677753
No 223
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=27.19 E-value=37 Score=20.18 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=13.5
Q ss_pred eecCCCCCCcceeEEeec
Q psy10521 22 FNATPNDGYKSYRCRTVN 39 (66)
Q Consensus 22 ~nv~~~D~~~~Y~C~~~~ 39 (66)
..-...|-.|.|.|+..+
T Consensus 37 LGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 37 LGSRINDPRGTYSCKESE 54 (69)
T ss_pred ccCcccCCCcceEecCcc
Confidence 334456888999998876
No 224
>COG5475 Uncharacterized small protein [Function unknown]
Probab=27.07 E-value=72 Score=18.59 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=21.3
Q ss_pred CCeEEEeecc--cEEEeecCCCCCCcceeEEeeccccCc
Q psy10521 8 GGKYVVLSSG--DLYVFNATPNDGYKSYRCRTVNKITGE 44 (66)
Q Consensus 8 ~~ry~ilpsG--eL~I~nv~~~D~~~~Y~C~~~~~lTge 44 (66)
.|.-+.+-+| ...|.+++. | ++|.|+-.+...-+
T Consensus 7 tgdvV~lKsGGP~Mtvs~~ss-~--Gmy~C~Wf~g~g~~ 42 (60)
T COG5475 7 TGDVVTLKSGGPRMTVSGYSS-D--GMYECRWFDGYGVK 42 (60)
T ss_pred cCcEEEeecCCceEEEecccc-C--CeEEEEEecCCCcc
Confidence 3444444444 245566655 3 79999999987644
No 225
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=24.74 E-value=62 Score=22.57 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=13.1
Q ss_pred CeEEEeecccEEEee
Q psy10521 9 GKYVVLSSGDLYVFN 23 (66)
Q Consensus 9 ~ry~ilpsGeL~I~n 23 (66)
.++.|.++|+|+|.+
T Consensus 24 ~~~~I~~~g~L~i~G 38 (229)
T PF11101_consen 24 EKLRIDPDGNLFING 38 (229)
T ss_pred ceEEEcCCCcEEECC
Confidence 389999999999975
No 226
>KOG1832|consensus
Probab=24.26 E-value=76 Score=28.05 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=25.4
Q ss_pred cCCeEEEee--cccEEEeecCCCCCCcceeEE
Q psy10521 7 VGGKYVVLS--SGDLYVFNATPNDGYKSYRCR 36 (66)
Q Consensus 7 ~~~ry~ilp--sGeL~I~nv~~~D~~~~Y~C~ 36 (66)
.+.+++++- +||+.|.||...-..++|.|-
T Consensus 1111 ~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH 1142 (1516)
T KOG1832|consen 1111 GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH 1142 (1516)
T ss_pred cCCceEEeeeccceEEEEEccCcccccccccc
Confidence 356788864 999999999998878999994
No 227
>PF11901 DUF3421: Protein of unknown function (DUF3421); InterPro: IPR024518 This domain of unknown function is found in the fish toxin Natterin [] and in uncharacterised proteins.
Probab=24.20 E-value=81 Score=19.77 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=9.8
Q ss_pred CCCCcceeEEeecc
Q psy10521 27 NDGYKSYRCRTVNK 40 (66)
Q Consensus 27 ~D~~~~Y~C~~~~~ 40 (66)
+|....|-||++|.
T Consensus 6 ~~g~~iYV~Ra~~~ 19 (119)
T PF11901_consen 6 SDGEPIYVGRAKHE 19 (119)
T ss_pred CCCCEEEEEEEEEC
Confidence 34567888888765
No 228
>cd00244 AlgLyase Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond.
Probab=23.95 E-value=19 Score=27.26 Aligned_cols=34 Identities=32% Similarity=0.337 Sum_probs=24.4
Q ss_pred EeecccEEEeecCCCCCCcceeEEee-ccccCcEEec
Q psy10521 13 VLSSGDLYVFNATPNDGYKSYRCRTV-NKITGESQAS 48 (66)
Q Consensus 13 ilpsGeL~I~nv~~~D~~~~Y~C~~~-~~lTge~~~S 48 (66)
+.|.|-+.=..-...+ +.|.|.+. .++||+++.-
T Consensus 8 ~~p~gy~~~~~~~~~~--~~~~C~~~p~py~g~l~~~ 42 (339)
T cd00244 8 VPPSGYYADVLKRKGP--KAYDCTAVPNPYTGELVFR 42 (339)
T ss_pred cCCccccccHHHhccC--CCCCCCCCCCCccCcccCc
Confidence 3466655544444444 78999998 9999999873
No 229
>PF00900 Ribosomal_S4e: Ribosomal family S4e; InterPro: IPR013845 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families includes yeast S7 (YS6); archaeal S4e; and mammalian and plant cytoplasmic S4 []. Two highly similar isoforms of mammalian S4 exist, one coded by a gene on chromosome Y, and the other on chromosome X. These proteins have 233 to 264 amino acids. This entry represents the central region of these proteins.; PDB: 2XZM_W 2XZN_W 3IZ6_D 3KBG_A 3U5G_E 3U5C_E 3IZB_D.
Probab=22.58 E-value=1.5e+02 Score=17.52 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=24.2
Q ss_pred CCeEEEee--cccEEEeecCCCCCCcceeEEeecccc
Q psy10521 8 GGKYVVLS--SGDLYVFNATPNDGYKSYRCRTVNKIT 42 (66)
Q Consensus 8 ~~ry~ilp--sGeL~I~nv~~~D~~~~Y~C~~~~~lT 42 (66)
+..|-+++ .|-|.++.+++|++ +.=-|++.++.+
T Consensus 3 ~e~yRvl~d~kgr~~l~~I~~eea-~~KLckV~~k~~ 38 (77)
T PF00900_consen 3 GEHYRVLYDTKGRFVLHPISEEEA-KYKLCKVRNKTT 38 (77)
T ss_dssp TEEEEEEE-TTS-EEEEEE-TTGG-GEEEEEEEEEEE
T ss_pred CcEEEEEECCCCcEEEEECCHHHc-cCeEEEEeEEEE
Confidence 44566765 79999999999985 333599998877
No 230
>PHA03269 envelope glycoprotein C; Provisional
Probab=22.30 E-value=1.7e+02 Score=23.79 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=28.7
Q ss_pred CCeEEEe-e--cc--cEEEeecCCCCCCcceeEEeeccccCcEEec
Q psy10521 8 GGKYVVL-S--SG--DLYVFNATPNDGYKSYRCRTVNKITGESQAS 48 (66)
Q Consensus 8 ~~ry~il-p--sG--eL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S 48 (66)
++||++- + .| -|.|++|++.++ |.|..+..+.-.+-...+
T Consensus 275 ~~~yi~p~~a~p~~~pL~I~sltaATe-GvY~Wrv~~~~n~t~~~~ 319 (566)
T PHA03269 275 KEKYIIPDRKTTSDFSLHILSLDASTE-GTYIWRVIHTANKNVINE 319 (566)
T ss_pred CceEEeccCCCCCccceEEeecccccC-ceEEEEEecCCCCceeee
Confidence 5788773 2 11 299999999996 999999887665444444
No 231
>PHA02854 putative host range protein; Provisional
Probab=21.25 E-value=2.5e+02 Score=19.63 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=36.3
Q ss_pred eEEE-eecccEEEeecCCCCCCcceeEEeeccccCcEEecccceeEEEeccccc
Q psy10521 10 KYVV-LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGFRAV 62 (66)
Q Consensus 10 ry~i-lpsGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~~S~~~~~l~v~ep~~~ 62 (66)
++.+ +.+++|=|.||+--.+ .+|=|...=+.+.+-+.. -+.|.+|.++
T Consensus 6 eldIflvdEnialKnv~L~kG-dSYGC~I~Lk~~~~K~~~----~i~Il~pdws 54 (178)
T PHA02854 6 ELDIFVTNEDLALKNVELFKG-NSYGCFINLKVKEEKKFN----IIFVLKPDWS 54 (178)
T ss_pred EEEEEEecCceeccccccccC-CccCEEEEEEeCCccEEE----EEEEEecChh
Confidence 3444 4599999999999875 799999988877765543 5667777664
No 232
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=20.84 E-value=77 Score=20.23 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=21.9
Q ss_pred cccEEEeecCCCCCCcceeEEeeccc
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKI 41 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~l 41 (66)
.+.|||.-|.|+|...++.++.....
T Consensus 11 ~s~lY~i~V~~sd~~~t~v~Rs~eeF 36 (101)
T cd06896 11 SSNLYLVQVTQSCNLVSLTEKSFEQF 36 (101)
T ss_pred cceEEEEEEEEeCCCcceeeecHHHH
Confidence 36899999999999899999987543
No 233
>KOG1460|consensus
Probab=20.38 E-value=60 Score=25.10 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=26.6
Q ss_pred cccEEEeecCCCCCCcceeEEeeccccCcEE
Q psy10521 16 SGDLYVFNATPNDGYKSYRCRTVNKITGESQ 46 (66)
Q Consensus 16 sGeL~I~nv~~~D~~~~Y~C~~~~~lTge~~ 46 (66)
.|-|+...|+.|++ ..|-|.+-++-|||+-
T Consensus 136 ~~tll~tkvs~e~a-snfG~lV~dP~t~evl 165 (407)
T KOG1460|consen 136 IGTLLVTKVSREQA-SNFGCLVEDPSTGEVL 165 (407)
T ss_pred ceEEEEEEecHhHh-hccCeeeecCCcCceE
Confidence 46788999999997 8999999999999974
No 234
>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease. Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.
Probab=20.16 E-value=1.5e+02 Score=16.89 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=9.6
Q ss_pred CCccCccCCeEEEee
Q psy10521 1 MTSDDFVGGKYVVLS 15 (66)
Q Consensus 1 ~~ps~~~~~ry~ilp 15 (66)
|.|.+..+...++.+
T Consensus 8 M~P~l~~GD~vlv~~ 22 (90)
T TIGR02754 8 MSPTLPPGDRIIVVP 22 (90)
T ss_pred ccCccCCCCEEEEEE
Confidence 677777666655553
Done!