RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10521
(66 letters)
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 53.8 bits (129), Expect = 1e-10
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
GKY+VL SG+L++ P DGYKSY+CRT +++TGE++ S + RL IT
Sbjct: 155 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVIT 204
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 51.5 bits (123), Expect = 7e-10
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 3 SDDFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
GKY+VL SG+L++ P DGYKSY+CRT +++TGE++ S + RL IT
Sbjct: 185 PGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVIT 239
Score = 32.2 bits (73), Expect = 0.005
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 1 MTSDDFVGGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASV 49
++ D + V L + + + C N G Q +
Sbjct: 661 ISEDLGITTSRVGRRGSVLTIEAVEASHAGN-FTCHARNLA-GHQQFTT 707
Score = 28.7 bits (64), Expect = 0.094
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASV 49
K V +G L + N N +Y C N+ ++ S+
Sbjct: 570 NRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSL 611
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 41.4 bits (97), Expect = 3e-06
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
++V +G+LY+ +D +Y C N +T +
Sbjct: 148 NRRFVSQETGNLYIAKVEKSDV-GNYTCVVTNTVTNHKVLGPPTPLILRN 196
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 39.9 bits (93), Expect = 9e-06
Identities = 10/41 (24%), Positives = 12/41 (29%)
Query: 10 KYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVF 50
+ +GDLY N D Y C T Q
Sbjct: 164 RVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNP 204
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 37.5 bits (87), Expect = 6e-05
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQ 46
G ++V ++G+LY+ +D +Y C + I ++
Sbjct: 149 GRRFVSQTTGNLYIAKTEASDL-GNYSCFATSHIDFITK 186
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 36.9 bits (85), Expect = 1e-04
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 9 GKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVF 50
G+ ++ + L + N ND Y + +A+
Sbjct: 63 GREIIYPNASLLIQNIIQNDT-GFYTLHVIKSDLVNEEATGQ 103
Score = 31.8 bits (72), Expect = 0.006
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 12 VVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQ 51
S+ +L++ N T N+ SY C+ N TG ++ +V
Sbjct: 243 FQQSTQELFIPNITVNNS-GSYTCQAHNSDTGLNRTTVTT 281
Score = 28.0 bits (62), Expect = 0.18
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 12 VVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASV 49
+ + L +FN T ND SY+C T N ++ SV
Sbjct: 159 LSNGNRTLTLFNVTRNDT-ASYKCETQNPVSARRSDSV 195
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 34.4 bits (79), Expect = 9e-04
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 9 GKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASVFQTRLSI 56
++ +L++ +L + N +D G YRC + GE +++
Sbjct: 145 NRFAMLANNNLQILNINKSDEGI--YRCEGRVEARGEIDFRDIIVIVNV 191
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 32.2 bits (73), Expect = 0.005
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSITGF 59
++V ++G+LY+ N +D +Y C + +S S F + I
Sbjct: 57 KRRFVSQTNGNLYIANVEASDK-GNYSCFVSSPSITKSVFSKFIPLIPIPER 107
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 31.3 bits (71), Expect = 0.010
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 8 GGKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASV 49
KY +L +L + N T +D G +Y C K AS
Sbjct: 266 SKKYSLLGGSNLLISNVTDDDSG--TYTCVVTYKN-ENISASA 305
Score = 31.0 bits (70), Expect = 0.015
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 9 GKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASVF 50
+ VVL SG L + P D G YRC N + +
Sbjct: 169 SRVVVLPSGALQISRLQPGDSG--VYRCSARNPASTRTGNEAE 209
Score = 30.2 bits (68), Expect = 0.027
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 8 GGKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASVF 50
+ ++ +L + +D G+ Y+C N+ G +Q+S
Sbjct: 356 SDYFQIVGGSNLRILGVVKSDEGF--YQCVAENEA-GNAQSSAQ 396
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 30.6 bits (69), Expect = 0.022
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 3 SDDFVGGKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASVF 50
++ S +L + N ND Y C NK GE AS+
Sbjct: 240 EEEDDEKHIFSDDSSELTIRNVDKNDEAE--YVCIAENKA-GEQDASIH 285
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 30.1 bits (68), Expect = 0.027
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 8 GGKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASVFQTRLSI 56
++ +L++ +L + N +D G YRC + GE +++
Sbjct: 142 DNRFAMLANNNLQILNINKSDEG--IYRCEGRVEARGEIDFRDIIVIVNV 189
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 30.1 bits (68), Expect = 0.028
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 8 GGKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQAS 48
+ VL SG L + N D G YRC N + G + +
Sbjct: 144 NSRIAVLESGSLRIHNVQKEDAGQ--YRCVAKNSL-GTAYSK 182
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 29.9 bits (67), Expect = 0.031
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 7 VGGKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASVF 50
V + L + N + D G Y CR N I G ++ + +
Sbjct: 172 SWISESVEADVRLRLANVSERDGGE--YLCRATNFI-GVAEKAFW 213
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 29.4 bits (66), Expect = 0.042
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 8 GGKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGES 45
+++VLS+ L + D G YRC GE
Sbjct: 146 DVRFIVLSNNYLQIRGIKKTDEGT--YRCEGRILARGEI 182
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 29.1 bits (65), Expect = 0.057
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 8 GGKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQAS 48
+ ++ G+L + N P D G +Y+C N + G ++S
Sbjct: 161 SSRVRIVDGGNLLISNVEPIDEG--NYKCIAQNLV-GTRESS 199
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 28.9 bits (64), Expect = 0.076
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 1 MTSDDFVGGKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASV 49
+ ++ + G L + T + G +Y N G++ AS+
Sbjct: 293 IFTEFLEPAANETVRHGCLRLNQPTHVNNG--NYTLLAANPF-GQASASI 339
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 28.2 bits (63), Expect = 0.14
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 8 GGKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASV 49
+ + + G L + +D G Y C N + GE ++ V
Sbjct: 156 KDERITIRGGKLMITYTRKSDAG--KYVCVGTNMV-GERESEV 195
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 27.6 bits (61), Expect = 0.23
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 2 TSDDFVGGKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASVFQ 51
G + +L++GDL + N T +D G +Y +
Sbjct: 46 MKPFLKSGAFEILANGDLKIKNLTRDDSG--TYNVTVYSTNGTRILNKALD 94
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 27.3 bits (60), Expect = 0.27
Identities = 10/50 (20%), Positives = 17/50 (34%)
Query: 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASVFQTRLSIT 57
G L + ATP D +S+ C ++ G+ L +
Sbjct: 132 GVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 181
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 27.1 bits (60), Expect = 0.29
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 8 GGKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQAS 48
L G L + N+ D G Y C N + G +
Sbjct: 154 SNPRYSLKDGFLQIENSREEDQG--KYECVAENSM-GTEHSK 192
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex,
beta trefoil, IG domain, growth factor/growth factor
receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 334
Score = 26.9 bits (59), Expect = 0.38
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 9 GKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASV 49
+ V++ L V NA+ D G +Y CR SV
Sbjct: 53 SERVLVGPQRLQVLNASHEDSG--AYSCRQRLTQRVLCHFSV 92
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 26.6 bits (58), Expect = 0.57
Identities = 6/42 (14%), Positives = 9/42 (21%), Gaps = 1/42 (2%)
Query: 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASV 49
K L + + C N G A +
Sbjct: 268 ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTH-GIDAAYI 308
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 26.0 bits (57), Expect = 0.74
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 15 SSGDLYVFNATPND-GYKSYRCRTVNKITGESQASV 49
+ D Y+ AT D G SY CR + S +V
Sbjct: 135 HNSDFYIPKATLKDSG--SYFCRGLVGSKNVSSETV 168
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 26.0 bits (56), Expect = 0.85
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 19 LYVFNATPNDGYKSYRCRTVNKITGESQASVF 50
L + T D +SY C + GE +
Sbjct: 298 LSIKKVTSEDLKRSYVCHARSAK-GEVAKAAK 328
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 25.6 bits (55), Expect = 1.2
Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 3/52 (5%)
Query: 7 VGGKYVVLSSGDLYVFNATPND-GYKSYRCRTVNKITGESQASVFQTRLSIT 57
+ G S +L + N D G Y C V +T
Sbjct: 172 IDGTKYSQSGQNLIIHNPELEDSGR--YDCYVHYDDVRIKNDIVVSRCKILT 221
Score = 24.0 bits (51), Expect = 5.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 14 LSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASV 49
+ +GDL++ N T ND ++ Y C K Q V
Sbjct: 86 VKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIV 121
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 25.2 bits (55), Expect = 1.4
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 15 SSGDLYVFNATPND-GYKSYRCRTVNKITGESQASV 49
+ D ++ AT D G SY CR + S +V
Sbjct: 135 HNSDFHIPKATLKDSG--SYFCRGLVGSKNVSSETV 168
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA
synthetase, tyrrs, ligase, tyrosine, RNA-binding,
ATP-binding; 2.9A {Mycobacterium tuberculosis}
Length = 432
Score = 24.1 bits (53), Expect = 3.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 2 TSDDFVGGKYVVLSSG 17
S DF+ G+++VL G
Sbjct: 398 QSSDFLHGRWLVLRRG 413
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E*
1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Length = 419
Score = 24.1 bits (53), Expect = 4.1
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 2 TSDDFVGGKYVVLSSG 17
T++ + G++ V+ G
Sbjct: 394 TAEHRLEGRFTVIRRG 409
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design,
ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP:
c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Length = 420
Score = 24.1 bits (53), Expect = 4.5
Identities = 3/16 (18%), Positives = 9/16 (56%)
Query: 2 TSDDFVGGKYVVLSSG 17
+D + G++ ++ G
Sbjct: 395 APEDKIDGEFTIIRRG 410
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 23.8 bits (51), Expect = 4.5
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 8 GGKYVVLSSGDLYVFNATPNDGYKSYRCRTVNKITGESQASV 49
G+ ++ + L + N ND Y + +A+
Sbjct: 63 SGREIIYPNASLLIQNIIQNDA-GFYTLHVIKSDLVNEEATG 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.384
Gapped
Lambda K H
0.267 0.0469 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 951,468
Number of extensions: 40375
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 38
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)