Query psy10530
Match_columns 141
No_of_seqs 205 out of 1206
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 20:40:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_Y L33, YL33, 60S ribosoma 100.0 5.9E-61 2E-65 361.7 8.4 126 14-140 2-127 (127)
2 4a17_S RPL26, 60S ribosomal pr 100.0 1.2E-60 3.9E-65 363.1 6.7 125 14-139 1-125 (135)
3 3iz5_Y 60S ribosomal protein L 100.0 7.1E-60 2.4E-64 364.0 5.3 126 14-140 1-126 (150)
4 2zkr_t 60S ribosomal protein L 100.0 1E-53 3.4E-58 328.3 6.9 127 14-140 1-127 (145)
5 3j21_U 50S ribosomal protein L 100.0 8.3E-53 2.9E-57 315.0 9.0 116 20-136 4-120 (121)
6 1vq8_T 50S ribosomal protein L 100.0 2E-52 7E-57 312.5 8.6 118 20-138 1-119 (120)
7 3bbo_W Ribosomal protein L24; 99.9 1.3E-28 4.5E-33 195.9 -2.1 92 42-134 43-154 (191)
8 2zjr_R 50S ribosomal protein L 99.9 6.7E-25 2.3E-29 162.5 3.4 75 53-128 7-93 (115)
9 3v2d_Y 50S ribosomal protein L 99.9 2.8E-24 9.7E-29 158.2 4.0 75 59-134 4-92 (110)
10 2ftc_N Mitochondrial ribosomal 99.9 4.6E-22 1.6E-26 143.3 5.4 69 65-134 1-82 (96)
11 3r8s_U 50S ribosomal protein L 99.8 1.5E-22 5.1E-27 147.3 2.6 72 60-134 2-88 (102)
12 1nz9_A Transcription antitermi 98.7 6.3E-08 2.2E-12 62.3 6.5 54 60-118 3-56 (58)
13 3p8b_B Transcription antitermi 98.1 7.2E-06 2.5E-10 61.3 7.3 60 59-123 89-148 (152)
14 2e6z_A Transcription elongatio 97.5 4E-05 1.4E-09 49.8 2.5 36 59-95 5-40 (59)
15 2jvv_A Transcription antitermi 97.2 0.00071 2.4E-08 51.5 6.3 54 59-117 125-178 (181)
16 2ckk_A KIN17; beta barrel, rib 96.8 0.0013 4.6E-08 48.6 4.8 34 61-96 71-104 (127)
17 2do3_A Transcription elongatio 96.8 0.0013 4.3E-08 44.6 3.8 27 62-89 18-44 (69)
18 2xhc_A Transcription antitermi 96.1 0.011 3.8E-07 50.2 6.6 54 59-117 296-349 (352)
19 1m1h_A Transcription antitermi 95.5 0.0023 8E-08 52.0 0.0 55 58-117 191-245 (248)
20 2e70_A Transcription elongatio 91.9 0.24 8.2E-06 33.5 4.5 30 64-96 20-49 (71)
21 4a18_F RPL14; ribosome, eukary 91.4 0.5 1.7E-05 35.1 6.2 54 62-125 7-61 (126)
22 3iz5_N 60S ribosomal protein L 90.5 0.29 1E-05 36.6 4.2 55 62-125 7-61 (134)
23 3izc_N 60S ribosomal protein R 89.0 0.38 1.3E-05 36.2 3.9 57 62-125 15-71 (138)
24 3j21_5 50S ribosomal protein L 88.8 0.45 1.6E-05 32.6 3.8 58 62-125 4-61 (83)
25 2xzm_W 40S ribosomal protein S 88.0 1.2 3.9E-05 36.7 6.4 71 59-137 174-256 (260)
26 4a18_N RPL27, ribosomal protei 87.1 1.1 3.6E-05 34.1 5.3 62 62-124 5-87 (144)
27 1yfb_A Transition state regula 82.1 1 3.6E-05 28.8 2.8 24 45-73 24-47 (59)
28 2joy_A 50S ribosomal protein L 81.7 1 3.5E-05 31.4 2.9 59 62-125 4-62 (96)
29 1qp2_A Protein (PSAE protein); 81.2 1.2 4.1E-05 30.1 2.9 39 62-101 2-46 (70)
30 2l66_A SSO7C4, transcriptional 75.8 2.9 9.8E-05 25.6 3.4 25 45-74 14-38 (53)
31 2oug_A Transcriptional activat 75.6 0.0085 2.9E-07 44.4 -10.0 31 59-90 107-137 (162)
32 3iz6_D 40S ribosomal protein S 75.0 4.4 0.00015 33.4 5.2 56 59-122 172-230 (265)
33 4a17_P RPL21, 60S ribosomal pr 71.8 2.2 7.5E-05 32.7 2.5 44 44-96 24-77 (157)
34 2glw_A PHS018, 92AA long hypot 71.3 2.9 9.9E-05 28.8 2.8 22 46-72 63-84 (92)
35 1vq8_Q 50S ribosomal protein L 70.4 7.3 0.00025 27.5 4.8 53 32-96 15-77 (96)
36 3u5c_E RP5, S7, YS6, 40S ribos 67.3 4.3 0.00015 33.3 3.5 56 59-122 172-230 (261)
37 3iz5_U 60S ribosomal protein L 67.1 3.3 0.00011 31.9 2.6 44 44-96 24-77 (164)
38 3j21_R 50S ribosomal protein L 65.0 7.2 0.00025 27.5 3.8 43 44-95 25-77 (97)
39 3izc_U 60S ribosomal protein R 62.1 2.5 8.5E-05 32.5 1.0 44 44-96 24-77 (160)
40 1jb0_E Photosystem 1 reaction 61.5 11 0.00036 25.7 4.0 38 62-100 1-45 (75)
41 3j20_E 30S ribosomal protein S 57.1 9.4 0.00032 30.9 3.7 57 58-122 175-235 (243)
42 1mvf_D MAZE protein, PEMI-like 56.2 7.7 0.00026 25.4 2.6 25 43-72 13-37 (82)
43 3kbg_A 30S ribosomal protein S 54.1 11 0.00039 29.9 3.7 38 58-96 135-176 (213)
44 2ftc_K 39S ribosomal protein L 53.6 41 0.0014 23.6 6.2 64 62-128 4-76 (98)
45 2w1t_A Spovt, stage V sporulat 52.3 9.4 0.00032 29.5 2.8 24 46-74 17-40 (178)
46 2jz2_A SSL0352 protein; SH3-li 49.3 19 0.00063 23.9 3.5 57 61-124 1-59 (66)
47 1jt8_A EIF-1A, probable transl 49.0 18 0.00062 25.5 3.7 42 43-90 45-87 (102)
48 3dcl_A TM1086; SAD, structural 47.9 25 0.00084 29.2 4.8 31 64-95 86-116 (284)
49 2ew3_A SH3-containing GRB2-lik 46.9 12 0.00043 23.3 2.4 19 59-77 19-37 (68)
50 3r8s_P 50S ribosomal protein L 46.9 65 0.0022 23.2 6.5 71 49-122 5-85 (114)
51 1zuy_A Myosin-5 isoform; SH3 d 46.5 17 0.00059 21.3 2.9 19 59-77 17-35 (58)
52 2d9r_A Conserved hypothetical 46.4 11 0.00036 26.6 2.1 21 46-71 80-100 (104)
53 2zjr_M 50S ribosomal protein L 46.1 68 0.0023 24.6 6.8 74 47-122 7-93 (166)
54 4e8b_A Ribosomal RNA small sub 45.6 40 0.0014 26.5 5.7 48 46-95 19-66 (251)
55 1z85_A Hypothetical protein TM 45.4 69 0.0024 25.1 7.0 48 46-96 27-74 (234)
56 2g6f_X RHO guanine nucleotide 44.6 15 0.00051 21.9 2.4 19 59-77 20-38 (59)
57 4a18_E RPL6; ribosome, eukaryo 44.5 21 0.00071 28.1 3.7 55 62-120 45-110 (191)
58 2zkr_q 60S ribosomal protein L 44.5 4.8 0.00017 30.9 0.1 53 32-96 15-77 (160)
59 2bzy_A CRK-like protein, CRKL 43.6 15 0.00052 22.5 2.4 19 59-77 19-37 (67)
60 3kw2_A Probable R-RNA methyltr 43.4 66 0.0023 25.5 6.7 50 44-96 16-66 (257)
61 1zuu_A BZZ1 protein; SH3 domai 43.0 22 0.00074 20.9 2.9 17 59-75 17-33 (58)
62 1at0_A 17-hedgehog; developmen 42.7 43 0.0015 24.0 5.0 31 57-87 87-117 (145)
63 2ege_A Uncharacterized protein 42.6 16 0.00054 23.1 2.4 14 59-72 30-43 (75)
64 3udc_A Small-conductance mecha 42.4 18 0.00063 28.7 3.2 23 61-89 128-150 (285)
65 2qgv_A Hydrogenase-1 operon pr 41.0 18 0.00062 26.4 2.8 26 48-73 80-109 (140)
66 2qsi_A Putative hydrogenase ex 40.3 19 0.00066 26.2 2.8 29 46-74 76-108 (137)
67 1hmj_A RPB5, protein (subunit 40.1 27 0.00091 23.7 3.3 34 41-74 13-61 (78)
68 1j3t_A Intersectin 2; beta bar 39.3 19 0.00064 22.5 2.3 14 60-73 27-40 (74)
69 2yuo_A CIP85, RUN and TBC1 dom 38.6 20 0.00068 22.6 2.4 16 59-74 23-38 (78)
70 2eyx_A V-CRK sarcoma virus CT1 38.2 20 0.0007 22.0 2.3 19 59-77 24-42 (67)
71 2gnc_A SLIT-ROBO RHO GTPase-ac 38.2 21 0.00073 21.3 2.4 17 59-75 22-38 (60)
72 3zzx_A Thioredoxin; oxidoreduc 37.9 27 0.00091 23.1 3.0 18 44-61 58-75 (105)
73 2oqk_A Putative translation in 37.8 51 0.0018 23.3 4.7 44 41-90 55-98 (117)
74 1d7q_A Translation initiation 37.8 39 0.0013 25.2 4.2 43 43-91 56-98 (143)
75 1vhy_A Hypothetical protein HI 37.2 60 0.0021 25.6 5.5 48 46-96 21-69 (257)
76 1ruw_A Myosin-3 isoform, MYO3; 36.9 29 0.00098 21.2 2.9 19 59-77 19-37 (69)
77 3c0c_A Endophilin-A2; endocyto 36.8 22 0.00076 22.1 2.4 19 59-77 29-47 (73)
78 2vv5_A MSCS, small-conductance 36.6 42 0.0015 26.6 4.5 23 61-89 129-151 (286)
79 2a28_A BZZ1 protein; SH3 domai 36.1 37 0.0013 19.6 3.2 16 59-74 16-31 (54)
80 2ydl_A SH3 domain-containing k 36.0 23 0.0008 22.1 2.4 16 59-74 18-33 (69)
81 1uhc_A KIAA1010 protein; beta 35.7 25 0.00085 22.2 2.5 17 59-75 29-45 (79)
82 1vhk_A Hypothetical protein YQ 35.7 69 0.0024 25.4 5.6 47 47-95 23-69 (268)
83 1x2k_A OSTF1, osteoclast stimu 35.6 25 0.00085 21.5 2.4 17 59-75 23-39 (68)
84 2vxe_A CG10686-PA; EDC3, CAR-1 35.4 84 0.0029 21.7 5.3 54 64-118 12-65 (88)
85 2x3w_D Syndapin I, protein kin 35.4 29 0.00099 20.5 2.6 15 59-73 19-33 (60)
86 2dl8_A SLIT-ROBO RHO GTPase-ac 35.3 24 0.00083 21.9 2.4 16 59-74 25-40 (72)
87 1k1z_A VAV; SH3, proto-oncogen 35.1 36 0.0012 21.3 3.2 16 59-74 34-49 (78)
88 3v2d_T 50S ribosomal protein L 34.9 1.4E+02 0.0049 22.3 7.7 73 48-122 7-88 (146)
89 1csk_A C-SRC SH3 domain; phosp 34.6 27 0.00093 21.4 2.5 14 59-72 27-40 (71)
90 3eg3_A Proto-oncogene tyrosine 34.6 26 0.0009 20.7 2.4 14 59-72 21-34 (63)
91 2epd_A RHO GTPase-activating p 34.0 25 0.00085 22.1 2.3 17 59-75 26-42 (76)
92 2iim_A Proto-oncogene tyrosine 33.5 31 0.001 20.6 2.6 16 59-74 22-37 (62)
93 1w1f_A Tyrosine-protein kinase 32.9 26 0.0009 21.0 2.2 16 59-74 23-38 (65)
94 4ayb_H DNA-directed RNA polyme 31.8 43 0.0015 22.7 3.3 35 40-74 20-69 (84)
95 1gcq_C VAV proto-oncogene; SH3 31.3 47 0.0016 20.2 3.2 15 59-73 26-40 (70)
96 2dmo_A Neutrophil cytosol fact 31.3 27 0.00094 21.4 2.1 16 60-75 24-39 (68)
97 2enm_A Sorting nexin-9; SH3-li 30.8 42 0.0014 20.9 3.0 16 59-74 26-41 (77)
98 1uhf_A Intersectin 2; beta bar 30.8 33 0.0011 21.1 2.4 15 59-73 24-38 (69)
99 2ysq_A RHO guanine nucleotide 30.5 33 0.0011 21.8 2.4 19 59-77 26-44 (81)
100 3tee_A Flagella basal BODY P-r 29.8 81 0.0028 24.4 5.0 36 61-98 140-187 (219)
101 2lcs_A NAP1-binding protein 2; 29.4 37 0.0013 21.3 2.5 17 59-75 21-37 (73)
102 2d8h_A SH3YL1 protein; SH3 dom 28.5 52 0.0018 20.6 3.1 17 59-75 33-49 (80)
103 2dlp_A KIAA1783 protein; SH3 d 28.4 33 0.0011 22.0 2.2 15 59-73 24-38 (85)
104 2fhd_A RAD9 homolog, DNA repai 28.2 21 0.00072 27.2 1.3 29 56-87 58-86 (153)
105 3mp6_A MBP, SGF29, maltose-bin 28.1 1.1E+02 0.0039 25.5 6.0 41 58-98 384-427 (522)
106 2bz8_A SH3-domain kinase bindi 27.9 40 0.0014 19.8 2.4 19 59-77 17-35 (58)
107 2vkn_A Protein SSU81; membrane 27.1 50 0.0017 20.2 2.8 14 59-72 23-36 (70)
108 2lj0_A Sorbin and SH3 domain-c 26.8 63 0.0022 20.1 3.3 20 59-78 22-41 (65)
109 1hr0_W Translation initiation 26.6 52 0.0018 21.0 2.9 38 41-83 30-67 (71)
110 1gxi_E Photosystem I reaction 26.5 20 0.00067 24.2 0.8 33 62-95 2-38 (73)
111 1nm7_A Peroxisomal membrane pr 26.2 54 0.0019 20.7 2.9 17 59-75 24-40 (69)
112 2dgy_A MGC11102 protein; EIF-1 25.9 55 0.0019 23.2 3.1 42 44-90 41-82 (111)
113 2oi3_A Tyrosine-protein kinase 25.7 39 0.0013 21.5 2.1 16 59-74 41-56 (86)
114 3fdr_A Tudor and KH domain-con 25.7 1.1E+02 0.0038 19.9 4.5 47 47-95 10-60 (94)
115 3izc_a 60S ribosomal protein R 25.6 4.8 0.00017 30.2 -2.6 38 62-100 5-48 (136)
116 1cka_A C-CRK N-terminal SH3 do 25.6 47 0.0016 19.3 2.4 17 59-75 17-33 (57)
117 1u5s_A Cytoplasmic protein NCK 25.4 48 0.0016 20.2 2.5 15 59-73 22-36 (71)
118 1sem_A SEM-5; SRC-homology 3 ( 25.2 48 0.0016 19.3 2.4 19 59-77 18-36 (58)
119 2fb7_A SM-like protein, LSM-14 25.1 68 0.0023 22.5 3.4 53 64-117 18-70 (95)
120 1cz4_A VCP-like ATPase; double 25.0 48 0.0016 25.0 2.8 49 44-103 23-77 (185)
121 1gh2_A Thioredoxin-like protei 25.0 58 0.002 20.4 2.9 19 43-61 58-76 (107)
122 1jo8_A ABP1P, actin binding pr 24.8 49 0.0017 19.4 2.3 19 59-77 16-34 (58)
123 2v1r_A Peroxisomal membrane pr 24.8 50 0.0017 20.6 2.5 17 59-75 31-47 (80)
124 2egv_A UPF0088 protein AQ_165; 24.8 47 0.0016 25.8 2.8 45 46-95 15-60 (229)
125 1k4u_S Phagocyte NADPH oxidase 24.2 48 0.0016 19.7 2.2 19 59-77 21-39 (62)
126 1ugv_A KIAA0621, olygophrenin- 24.2 25 0.00084 21.9 0.9 14 59-72 26-39 (72)
127 3i4o_A Translation initiation 23.9 79 0.0027 21.1 3.5 38 42-84 38-75 (79)
128 1v6z_A Hypothetical protein TT 23.7 1.4E+02 0.005 22.9 5.5 48 45-96 13-60 (228)
129 1uti_A GRB2-related adaptor pr 23.6 53 0.0018 19.1 2.3 19 59-77 17-35 (58)
130 3cqt_A P59-FYN, proto-oncogene 23.4 1.3E+02 0.0045 18.9 4.4 19 59-77 21-39 (79)
131 2v1q_A SLA1, cytoskeleton asse 23.4 42 0.0014 19.7 1.8 15 59-73 18-32 (60)
132 2j5u_A MREC protein; bacterial 23.3 1.2E+02 0.0041 23.9 5.0 34 57-91 165-202 (255)
133 2drm_A Acanthamoeba myosin IB; 23.2 55 0.0019 19.0 2.3 19 59-77 19-37 (58)
134 3rnj_A Brain-specific angiogen 23.1 64 0.0022 19.4 2.7 14 60-73 25-38 (67)
135 2d8j_A FYN-related kinase; SH3 23.1 1.1E+02 0.0037 18.7 3.9 19 59-77 23-41 (77)
136 1iq6_A (R)-hydratase, (R)-spec 23.1 1.6E+02 0.0056 19.2 5.9 37 61-107 87-123 (134)
137 1dj7_B Ferredoxin thioredoxin 23.0 63 0.0022 21.8 2.8 25 63-88 2-40 (75)
138 2oyn_A Hypothetical protein MJ 22.9 57 0.0019 24.4 2.8 29 44-79 111-139 (146)
139 3fo8_D Tail sheath protein GP1 22.8 74 0.0025 26.3 3.7 30 62-91 28-57 (283)
140 2zzd_A Thiocyanate hydrolase s 22.7 66 0.0022 23.6 3.1 26 61-87 36-71 (126)
141 1gbq_A GRB2; complex (signal t 22.7 56 0.0019 20.3 2.4 16 59-74 25-40 (74)
142 2fpe_A C-JUN-amino-terminal ki 22.7 54 0.0018 19.5 2.2 16 60-75 20-35 (62)
143 2nwm_A Vinexin; cell adhesion; 22.7 56 0.0019 20.0 2.4 19 59-77 17-35 (65)
144 2vwf_A Growth factor receptor- 22.5 57 0.002 18.9 2.3 18 59-76 18-35 (58)
145 2pqh_A Spectrin alpha chain, b 22.5 1.5E+02 0.0051 18.5 4.7 19 59-77 18-36 (80)
146 1eik_A RNA polymerase subunit 22.5 37 0.0013 22.9 1.6 35 40-74 14-63 (77)
147 1uj0_A Signal transducing adap 22.4 57 0.0019 19.4 2.3 19 59-77 21-39 (62)
148 1oot_A Hypothetical 40.4 kDa p 22.4 45 0.0015 19.6 1.8 16 59-74 19-34 (60)
149 1jqq_A PEX13P, peroxisomal mem 22.3 58 0.002 21.0 2.5 17 59-75 31-47 (92)
150 1gl5_A Tyrosine-protein kinase 22.3 57 0.002 19.7 2.4 19 59-77 18-36 (67)
151 1y0m_A 1-phosphatidylinositol- 22.0 59 0.002 19.2 2.3 19 59-77 19-37 (61)
152 2f51_A Thioredoxin; electron t 21.8 1.1E+02 0.0039 19.7 4.0 32 46-85 63-94 (118)
153 2fpf_A C-JUN-amino-terminal ki 21.8 56 0.0019 20.0 2.2 18 60-77 23-40 (71)
154 3iz5_a 60S ribosomal protein L 21.7 5 0.00017 30.1 -3.2 38 62-100 5-48 (136)
155 2k52_A Uncharacterized protein 21.7 1.2E+02 0.0042 19.0 4.0 25 61-96 45-69 (80)
156 3o27_A Putative uncharacterize 21.5 48 0.0017 22.0 1.9 24 45-73 27-50 (68)
157 2oaw_A Spectrin alpha chain, b 21.5 1.1E+02 0.0038 17.9 3.6 19 59-77 17-35 (65)
158 2ak5_A RHO guanine nucleotide 21.4 62 0.0021 19.2 2.3 19 59-77 22-40 (64)
159 2j6f_A CD2-associated protein; 21.2 62 0.0021 19.2 2.3 15 59-73 17-31 (62)
160 1zx6_A YPR154WP; SH3 domain, p 21.2 60 0.0021 18.9 2.2 19 59-77 18-36 (58)
161 2j05_A RAS GTPase-activating p 21.2 59 0.002 19.5 2.2 19 59-77 22-40 (65)
162 3qyh_B CO-type nitrIle hydrata 21.1 69 0.0024 25.3 3.1 27 60-87 129-165 (219)
163 1yn8_A NBP2, NAP1-binding prot 21.0 43 0.0015 19.5 1.5 16 59-74 17-32 (59)
164 2qf4_A Cell shape determining 20.9 1.3E+02 0.0045 22.2 4.6 38 53-91 100-141 (172)
165 1wx6_A Cytoplasmic protein NCK 20.8 80 0.0027 20.2 3.0 15 59-73 33-47 (91)
166 2rf0_A Mitogen-activated prote 20.8 62 0.0021 21.3 2.4 16 59-74 45-60 (89)
167 1v1c_A Obscurin; muscle, sarco 20.8 47 0.0016 22.1 1.8 24 56-79 20-43 (71)
168 3qwz_A Transitional endoplasmi 20.7 98 0.0034 24.0 3.9 51 44-103 41-95 (211)
169 1w70_A Neutrophil cytosol fact 20.6 63 0.0021 19.1 2.2 19 59-77 20-38 (60)
170 4glm_A Dynamin-binding protein 20.6 63 0.0022 19.5 2.3 19 59-77 29-47 (72)
171 1ue9_A Intersectin 2; beta bar 20.5 94 0.0032 19.3 3.2 19 59-77 23-41 (80)
172 3i5r_A Phosphatidylinositol 3- 20.5 90 0.0031 19.7 3.1 14 59-72 21-34 (83)
173 2es7_A Q8ZP25_salty, putative 20.5 42 0.0014 23.6 1.6 14 48-61 80-93 (142)
174 1b07_A Protein (proto-oncogene 20.5 66 0.0022 19.6 2.4 18 59-76 19-36 (65)
175 2vc8_A Enhancer of mRNA-decapp 20.3 2.2E+02 0.0074 19.5 5.9 40 64-106 8-47 (84)
176 2dl5_A KIAA0769 protein; SH3 d 20.2 70 0.0024 20.0 2.5 17 59-75 29-45 (78)
177 1x6b_A RHO guanine exchange fa 20.2 46 0.0016 21.0 1.6 15 59-73 33-47 (79)
178 2xmf_A Myosin 1E SH3; motor pr 20.2 65 0.0022 18.9 2.2 19 59-77 21-39 (60)
No 1
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=100.00 E-value=5.9e-61 Score=361.67 Aligned_cols=126 Identities=52% Similarity=0.828 Sum_probs=124.1
Q ss_pred eeecccccCCcccccccccCCCCccceeeeeccCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEccCCEE
Q psy10530 14 MKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVI 93 (141)
Q Consensus 14 mk~~~~vss~~rKqRK~~~nAp~h~r~k~msapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V 93 (141)
|||||+||||||||||+|||||+|+|+++||||||+|||++||+|+|+|++||+|+||+|+|||++ |+|++|++++++|
T Consensus 2 ~k~~~~vss~~rKqRK~~f~Ap~h~r~k~msa~LSkeLr~ky~vrs~~IkkgD~V~Vi~GkdKGk~-GkV~~V~~kk~~V 80 (127)
T 3u5e_Y 2 AKQSLDVSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQE-GKISSVYRLKFAV 80 (127)
T ss_dssp CCCCSSCCCCHHHHHHHHHTCCHHHHHHHTEEEBCHHHHHHHTCCEEECCTTCEEEECSSTTTTCE-EEEEEEEGGGTEE
T ss_pred CccCCccCCCchhhHHHhhcCCcchhhhheeCcCCHHHHHHhCcCcccccCCCEEEEeecCCCCcc-ceEEEEECCCCEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEeeeeEeccCCcEEEecccccceEEEeCCCChhHHHHhhhhhhccc
Q psy10530 94 YIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIERRAKGRA 140 (141)
Q Consensus 94 ~VEgvn~~K~~G~~v~~pIhpSNV~i~~l~ldk~R~k~Le~k~~~~~ 140 (141)
+|||||++|++|.++|+|||||||+|+||+||++|+++||+++++++
T Consensus 81 ~VEgVn~~K~~G~~~e~pIh~SNV~i~~~~~dk~R~~~lerk~~~~~ 127 (127)
T 3u5e_Y 81 QVDKVTKEKVNGASVPINLHPSKLVITKLHLDKDRKALIQRKGGKLE 127 (127)
T ss_dssp EEETCEEECSSSCEEECCBCGGGEEEEECCCCHHHHHHHHHTTCCCC
T ss_pred EEeCeEEECCCCcEEEcccchHHEEEEccccCcHHHHHhhhhhhcCC
Confidence 99999999999999999999999999999999999999999998874
No 2
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=100.00 E-value=1.2e-60 Score=363.12 Aligned_cols=125 Identities=55% Similarity=0.873 Sum_probs=122.5
Q ss_pred eeecccccCCcccccccccCCCCccceeeeeccCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEccCCEE
Q psy10530 14 MKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVI 93 (141)
Q Consensus 14 mk~~~~vss~~rKqRK~~~nAp~h~r~k~msapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V 93 (141)
|||||+||||||||||+|||||+|+|+++||||||+|||++||+|+|+|++||+|+||+|+|||++ |+|++|++++++|
T Consensus 1 mk~n~~vss~~rKqRK~~f~Ap~h~rrk~msa~LSkeLr~ky~vRs~~IkkgD~V~Vi~GkdKGk~-GkV~~V~~kk~~V 79 (135)
T 4a17_S 1 MKTHVEVSSARRKQRKAHFASPSHLRQTLMSAHLSKDLRSKYNVRSMPVRKDDEVLIVRGKFKGNK-GKVTQVYRKKWAI 79 (135)
T ss_dssp -CCCTTSCCCHHHHHHHHHTCCHHHHHHHSEEEECHHHHHHHTCSEEECCTTCEEEECSSTTTTCE-EEEEEEETTTTEE
T ss_pred CCcCCccCCCchhhHHHhhcCCcchhhheeeCcCCHHHHHHhCCCcccccCCCEEEEeecCCCCce-eeEEEEEcCCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEeeeeEeccCCcEEEecccccceEEEeCCCChhHHHHhhhhhhcc
Q psy10530 94 YIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIERRAKGR 139 (141)
Q Consensus 94 ~VEgvn~~K~~G~~v~~pIhpSNV~i~~l~ldk~R~k~Le~k~~~~ 139 (141)
+|||||++|++|.++|+|||||||+|+||+||++|+++||++++++
T Consensus 80 ~VEgVn~~K~~G~~~e~pIh~SNV~i~~~k~dk~R~~~lerk~~~~ 125 (135)
T 4a17_S 80 HVEKISKNKLNGAPYQIPLSASQLVLTKLKLDKSRQSLLTRKAASL 125 (135)
T ss_dssp EETTCCEEETTTEEECCCBCGGGEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEeCeEEEcCCCCEEEcccchHHEEEEcccCCcHHHHHhhhhcccc
Confidence 9999999999999999999999999999999999999999998876
No 3
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=100.00 E-value=7.1e-60 Score=363.96 Aligned_cols=126 Identities=70% Similarity=1.059 Sum_probs=124.2
Q ss_pred eeecccccCCcccccccccCCCCccceeeeeccCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEccCCEE
Q psy10530 14 MKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVI 93 (141)
Q Consensus 14 mk~~~~vss~~rKqRK~~~nAp~h~r~k~msapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V 93 (141)
|||||+||||||||||+|||||+|+|+++||||||+|||++||+|+|+|++||+|+||+|+|||++ |+|++|++++++|
T Consensus 1 mk~n~~vss~~rKqRK~~f~Ap~h~Rrk~msa~LSkELR~ky~vRs~~IkKGD~V~Vi~GkdKGk~-GkVl~V~~kk~~V 79 (150)
T 3iz5_Y 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRGSYKGRE-GKVVQVYRRRWVI 79 (150)
T ss_dssp CCCCSSSCCCHHHHHHHHHHCCHHHHHHTTEEEECHHHHTTTTCSEEECCSSSEEEECSSTTTTCE-EEEEEEETTTTEE
T ss_pred CCcCCccCCCchHHHHHhhcCCcchhhhheeCcCCHHHHHHhCCcccccCCCCEEEEeecCCCCcc-ceEEEEEcCCCEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEeeeeEeccCCcEEEecccccceEEEeCCCChhHHHHhhhhhhccc
Q psy10530 94 YIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIERRAKGRA 140 (141)
Q Consensus 94 ~VEgvn~~K~~G~~v~~pIhpSNV~i~~l~ldk~R~k~Le~k~~~~~ 140 (141)
+|||||++|++|.++|+|||||||+|+||+||++|+++||+++++++
T Consensus 80 ~VEGVN~~K~~G~~~eapIh~SNV~i~~~k~dk~R~~~lerk~~~~~ 126 (150)
T 3iz5_Y 80 HVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGRA 126 (150)
T ss_dssp EETTCEEECTTSCEEECCBCGGGEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred EEeCcEEEeCCCCEEecccchHHEEEEcccCChHHHHHhccchhhhh
Confidence 99999999999999999999999999999999999999999998875
No 4
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1e-53 Score=328.32 Aligned_cols=127 Identities=80% Similarity=1.215 Sum_probs=107.8
Q ss_pred eeecccccCCcccccccccCCCCccceeeeeccCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEccCCEE
Q psy10530 14 MKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVI 93 (141)
Q Consensus 14 mk~~~~vss~~rKqRK~~~nAp~h~r~k~msapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V 93 (141)
||||++||+|||||||+|||||+|+|+++|+||||+|||++||+|+++|++||+|+||+|+|||++.|+|++|++++++|
T Consensus 1 mk~~~~~s~~~rKqRk~~~~Ap~h~Rrk~msa~LSkelr~ky~vr~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V 80 (145)
T 2zkr_t 1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVI 80 (145)
T ss_dssp -------CCCHHHHHHHHHTCCHHHHGGGGBC-CCHHHHHC-CC-CCBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEE
T ss_pred CCccccccCCchHhHHHHhcCcHHHHHHHHhcccChhHHhhcCccccccCCCCEEEEeecCCCCcceeEEEEEECCCCEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999659999999999999
Q ss_pred EEeeeeEeccCCcEEEecccccceEEEeCCCChhHHHHhhhhhhccc
Q psy10530 94 YIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIERRAKGRA 140 (141)
Q Consensus 94 ~VEgvn~~K~~G~~v~~pIhpSNV~i~~l~ldk~R~k~Le~k~~~~~ 140 (141)
+|||||+.+++|.++|+|||+|||+|+|++|+++++++||+++++++
T Consensus 81 ~VEgvn~~Kp~G~~~e~PIh~SNV~lv~~~~~k~~k~~le~k~~~r~ 127 (145)
T 2zkr_t 81 YIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQ 127 (145)
T ss_dssp EETTCEEECSSCCEEECCBCGGGEEECC-CCCHHHHHHHHC------
T ss_pred EEeeeEeEcCCCceEEeccCHHHEEEEcCcCCchHHHHhhcccccch
Confidence 99999999999999999999999999999999987899999987764
No 5
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.3e-53 Score=314.97 Aligned_cols=116 Identities=52% Similarity=0.885 Sum_probs=113.2
Q ss_pred ccCCcccccccccCCCCccceeeeeccCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeee
Q psy10530 20 VTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQ 99 (141)
Q Consensus 20 vss~~rKqRK~~~nAp~h~r~k~msapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn 99 (141)
.|||||||||+|||||+|+|+++||||||+|||++||+|+++|++||+|+||+|+|||++ |+|++|++++++|+|||||
T Consensus 4 ~s~~~rK~Rk~~f~Ap~h~r~k~msa~LSkeLR~ky~~r~~~IkkGD~V~Vi~GkdKGk~-GkV~~V~~k~~~V~VEgvn 82 (121)
T 3j21_U 4 SSKQPRKQRKFLYNAPLHVRQKLMSAPLSRELREKYKVRNLPVRVGDKVRIMRGDYKGHE-GKVVEVDLKRYRIYVEGAT 82 (121)
T ss_dssp CCCCHHHHHHHHHHCCTTGGGGGSEEEBCHHHHHHTCCSEEECCSSSEEEECSSSCSSEE-EEEEEEETTTTEEEETTCE
T ss_pred ccCCchhhHHHhhcCCcchhhhhhcCcCCHHHHHHhCCcccccccCCEEEEeecCCCCcE-eEEEEEEecCCEEEEeCeE
Confidence 589999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred EeccCCcEEEecccccceEEEeCCC-ChhHHHHhhhhh
Q psy10530 100 RDKVNGATVYVGIHPSKCVIVKLKM-DKDRKKIIERRA 136 (141)
Q Consensus 100 ~~K~~G~~v~~pIhpSNV~i~~l~l-dk~R~k~Le~k~ 136 (141)
+++.+|.++|+|||||||+|+|++| |++|.++||+++
T Consensus 83 ~~k~~G~~~e~pIh~SNV~l~~~~~~d~~R~~~lerk~ 120 (121)
T 3j21_U 83 LRKTNGTEVFYPIHPSNVMIIELNLEDEKRKKIIERRA 120 (121)
T ss_dssp EECSSSCEEECCBCGGGEEEEECCCCCHHHHHHHHTTT
T ss_pred EEecCCcEEEcccCHHHeEEEcCccCCcHHHHHhhhcc
Confidence 9999999999999999999999999 559999999985
No 6
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=100.00 E-value=2e-52 Score=312.53 Aligned_cols=118 Identities=29% Similarity=0.496 Sum_probs=114.0
Q ss_pred ccCCcccccccccCCCCccceeeeeccCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeee
Q psy10530 20 VTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQ 99 (141)
Q Consensus 20 vss~~rKqRK~~~nAp~h~r~k~msapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn 99 (141)
||||||||||+|||||+|+|+++|+||||+|||++||+|+++|++||+|+||+|+|||++ |+|++|++++++|+|||||
T Consensus 1 ~s~~~rK~Rk~~~~Ap~h~rrk~msa~LskeLr~ky~vr~~~IkkGD~V~Vi~G~dKGk~-GkV~~V~~k~~~V~VEgvn 79 (120)
T 1vq8_T 1 MSKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEE-GEVINVDLDKAVIHVEDVT 79 (120)
T ss_dssp -CCCHHHHHHHHHTCCGGGSGGGGEEEECHHHHHHHTCSEEECCTTCEEEECSSTTTTCE-EEEEEEETTTTEEEETTCE
T ss_pred CCCCcchhhHHhhcCCcchhhheeeCcCCHHHHHhhccccccccCCCEEEEEecCCCCCE-EEEEEEECCCCEEEEeCeE
Confidence 699999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred EeccCCcEEEecccccceEEEeCCCCh-hHHHHhhhhhhc
Q psy10530 100 RDKVNGATVYVGIHPSKCVIVKLKMDK-DRKKIIERRAKG 138 (141)
Q Consensus 100 ~~K~~G~~v~~pIhpSNV~i~~l~ldk-~R~k~Le~k~~~ 138 (141)
+.|++|.++|+|||+|||+|+|++|++ +|..+||+++++
T Consensus 80 ~kK~~Gg~~e~pIh~SNV~i~~~~~~k~~Rv~~l~rk~~~ 119 (120)
T 1vq8_T 80 LEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDDS 119 (120)
T ss_dssp EECSSSCEEECCBCGGGEEEEECCCCCHHHHHHHHCSSCC
T ss_pred eEcCCCCEEEeeechHHEEEEeccCCCchhheehhccccC
Confidence 999999999999999999999999988 899999998754
No 7
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.93 E-value=1.3e-28 Score=195.87 Aligned_cols=92 Identities=23% Similarity=0.425 Sum_probs=64.7
Q ss_pred eeeccCCHHHHHhhCCcccc------eecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEecc---------CCc
Q psy10530 42 IMSAPLSKELRQKYNVRSMP------VRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKV---------NGA 106 (141)
Q Consensus 42 ~msapLSkeLr~ky~~rs~~------IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K~---------~G~ 106 (141)
++.++|+++||++||+|++| |++||+|+||+|+|||++ |+|++|++++++|+|||||+.+. +|.
T Consensus 43 ~~~~~l~~~lr~k~~~rslP~~~kmkIkKGD~V~VIaGkDKGK~-GkVl~V~~k~~rViVEGVN~vkKH~Kp~~~~~~Gg 121 (191)
T 3bbo_W 43 LIVMRIKRWERKDCKPNSLPKLHKRHVKVGDTVKVISGGEKGKI-GEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQ 121 (191)
T ss_dssp --------------------CTTSCCSCCSSCEEECSSSSTTCC-CSCCCCCSSSCCCCCSSCCCCCCBCCSCCSSSCCB
T ss_pred eeEecccHHHHHHhCCCCCCccccCeeecCCEEEEeecCCCCce-EEEEEEECCCCEEEEeCCEEEEEecCCcccCCCCC
Confidence 35789999999999999999 999999999999999999 99999999999999999999863 465
Q ss_pred --EEEecccccceEEEeCCCCh-hH--HHHhhh
Q psy10530 107 --TVYVGIHPSKCVIVKLKMDK-DR--KKIIER 134 (141)
Q Consensus 107 --~v~~pIhpSNV~i~~l~ldk-~R--~k~Le~ 134 (141)
++|+|||+|||+|+|+++++ +| ++++|+
T Consensus 122 Iv~kEaPIhiSNV~Lvdp~~gkptRVg~k~~ed 154 (191)
T 3bbo_W 122 IIKIEAAIHSSNVMLILKEQEVADRVGHKILED 154 (191)
T ss_dssp SSCCCCCCCGGGEEECSSSSCCCCCCCCCSSSC
T ss_pred EEEEecCcCHHHeEEEeccCCCceEEEEEEccC
Confidence 56999999999999999987 77 566653
No 8
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=99.90 E-value=6.7e-25 Score=162.50 Aligned_cols=75 Identities=25% Similarity=0.364 Sum_probs=68.9
Q ss_pred HhhCCcccceecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEec----cC-----Cc--EEEecccccceEEEe
Q psy10530 53 QKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDK----VN-----GA--TVYVGIHPSKCVIVK 121 (141)
Q Consensus 53 ~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K----~~-----G~--~v~~pIhpSNV~i~~ 121 (141)
.+|++|+|+|++||+|+||+|+|||++ |+|++|++++++|+|||||+.+ ++ |. ++|+|||+|||+|++
T Consensus 7 ~~~~~rkm~IkkGD~V~Vi~GkdKGk~-GkV~~V~~~~~~V~VEGvN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~lv~ 85 (115)
T 2zjr_R 7 GSHHNDKLHFKKGDTVIVLSGKHKGQT-GKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVD 85 (115)
T ss_dssp STTTTSCCSSCTTSEEECCSSSSTTCE-EEEEEEETTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBS
T ss_pred ccccceeCcccCCCEEEEeEcCCCCcE-EEEEEEECCCCEEEEeCcEeEEEecCCCcCCCCCCEEEEEcccCHHHEEEEe
Confidence 379999999999999999999999999 9999999999999999999986 22 43 689999999999999
Q ss_pred CCCCh-hH
Q psy10530 122 LKMDK-DR 128 (141)
Q Consensus 122 l~ldk-~R 128 (141)
+++++ +|
T Consensus 86 p~~~k~tR 93 (115)
T 2zjr_R 86 PETGKATR 93 (115)
T ss_dssp SSSBCCCC
T ss_pred ccCCCceE
Confidence 99987 67
No 9
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=99.89 E-value=2.8e-24 Score=158.23 Aligned_cols=75 Identities=35% Similarity=0.477 Sum_probs=67.9
Q ss_pred ccceecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEec---------cCC--cEEEecccccceEEEeCCCCh-
Q psy10530 59 SMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDK---------VNG--ATVYVGIHPSKCVIVKLKMDK- 126 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K---------~~G--~~v~~pIhpSNV~i~~l~ldk- 126 (141)
.++|++||+|+||+|+|||++ |+|++|++++++|+|||||+.+ .+| .++|+|||+|||+|+|+++++
T Consensus 4 k~~IkkGD~V~Vi~GkdKGk~-GkV~~V~~~~~~ViVEGvN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~ 82 (110)
T 3v2d_Y 4 KMHVKKGDTVLVASGKYKGRV-GKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKP 82 (110)
T ss_dssp CCSCCTTSEEEECSSTTTTCE-EEEEEEEGGGTEEEETTSSEEEEECCSSSSSTTCCEEEEECCEEGGGEEEBCTTTCSB
T ss_pred ccccCCCCEEEEeEcCCCCeE-eEEEEEECCCCEEEEeCEEEEEEEeCCCccCCCCCEEEEECCcCHHHeEEEcCcCCCc
Confidence 589999999999999999999 9999999999999999999986 356 578999999999999999987
Q ss_pred hH--HHHhhh
Q psy10530 127 DR--KKIIER 134 (141)
Q Consensus 127 ~R--~k~Le~ 134 (141)
+| ++++|+
T Consensus 83 tRvg~~~~ed 92 (110)
T 3v2d_Y 83 TRVRKKFLEN 92 (110)
T ss_dssp CCEEEEECSS
T ss_pred cEEEEEECCC
Confidence 77 666665
No 10
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=99.85 E-value=4.6e-22 Score=143.30 Aligned_cols=69 Identities=22% Similarity=0.300 Sum_probs=61.8
Q ss_pred CCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEec----cC----Cc--EEEecccccceEEEeCCCCh-hH--HHH
Q psy10530 65 DDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDK----VN----GA--TVYVGIHPSKCVIVKLKMDK-DR--KKI 131 (141)
Q Consensus 65 GD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K----~~----G~--~v~~pIhpSNV~i~~l~ldk-~R--~k~ 131 (141)
||+|+||+|+|||++ |+|++|++++++|+|||||+.+ ++ |. +.|+|||+|||+|+++++++ +| +++
T Consensus 1 GD~V~Vi~GkdKGk~-GkV~~V~~~~~~ViVeGvN~~kkh~kp~~~~~Ggiv~~e~pIh~SNV~lv~p~~~k~tRvg~~~ 79 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQ-GKVVQVIRQRNWVVVGGLNTHYRYIGKTMDYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRF 79 (96)
T ss_pred CCEEEEeEcCCCCcE-EEEEEEECCCCEEEEeCCEEEEEEcCCCCCCCCCEEEEecCcCHHHEEEEeCcCCCceEEEEEE
Confidence 899999999999999 9999999999999999999986 43 65 56999999999999999987 77 566
Q ss_pred hhh
Q psy10530 132 IER 134 (141)
Q Consensus 132 Le~ 134 (141)
+|+
T Consensus 80 ~~d 82 (96)
T 2ftc_N 80 TEA 82 (96)
T ss_pred ccC
Confidence 554
No 11
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=99.85 E-value=1.5e-22 Score=147.31 Aligned_cols=72 Identities=32% Similarity=0.412 Sum_probs=63.2
Q ss_pred cceecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEeccC----------C--cEEEecccccceEEEeCCCCh-
Q psy10530 60 MPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVN----------G--ATVYVGIHPSKCVIVKLKMDK- 126 (141)
Q Consensus 60 ~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K~~----------G--~~v~~pIhpSNV~i~~l~ldk- 126 (141)
.+|++||+|+||+|+|||++ |+|++|+++ ++|+|||||+.+.+ | .+.|+|||+|||+|+|+++++
T Consensus 2 ~~IkkGD~V~Vi~GkdKGk~-GkV~~V~~~-~~ViVeGvN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~ 79 (102)
T 3r8s_U 2 AKIRRDDEVIVLTGKDKGKR-GKVKNVLSS-GKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKA 79 (102)
T ss_dssp CSSCSSCEEEECSSSSTTCE-EEEEEEETT-TEEEETTCSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEEEETTTTEE
T ss_pred CCccCCCEEEEeEcCCCCee-eEEEEEEeC-CEEEEeCeEEEEeccccCcccCCCCCEEEEECCcCHHHEEEEcCcCCCc
Confidence 47999999999999999999 999999999 99999999998632 2 267899999999999999988
Q ss_pred hH--HHHhhh
Q psy10530 127 DR--KKIIER 134 (141)
Q Consensus 127 ~R--~k~Le~ 134 (141)
+| ++ +|+
T Consensus 80 trvg~~-~ed 88 (102)
T 3r8s_U 80 DRVGFR-FED 88 (102)
T ss_dssp ECEEEE-EET
T ss_pred eEEEEE-eCC
Confidence 77 44 554
No 12
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=98.66 E-value=6.3e-08 Score=62.30 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=46.6
Q ss_pred cceecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEeccCCcEEEecccccceE
Q psy10530 60 MPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCV 118 (141)
Q Consensus 60 ~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K~~G~~v~~pIhpSNV~ 118 (141)
++++.||.|.|++|+|+|.+ |.|.++++++.++.|+ ...-|.+.+++|+.++|.
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~-g~v~~v~~~k~~v~V~----v~~~Gr~t~v~l~~~~ve 56 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFT-GTVTEINPERGKVKVM----VTIFGRETPVELDFSQVV 56 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCE-EEEEEEETTTTEEEEE----EESSSSEEEEEECGGGEE
T ss_pred cccCCCCEEEEeecCCCCcE-EEEEEEcCCCCEEEEE----EEeCCCEEEEEECHHHEE
Confidence 56889999999999999999 9999999998888776 334588888889988874
No 13
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=98.12 E-value=7.2e-06 Score=61.28 Aligned_cols=60 Identities=23% Similarity=0.243 Sum_probs=52.3
Q ss_pred ccceecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEeccCCcEEEecccccceEEEeCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLK 123 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K~~G~~v~~pIhpSNV~i~~l~ 123 (141)
...+..||.|.|+.|.|+|-+ |.|.+|+..+.++.|+-. .-|...++.|++|+|..++..
T Consensus 89 ~~~~~~Gd~VrI~~Gpf~g~~-g~V~~vd~~k~~v~V~v~----~~gr~tpvel~~~~v~~i~~~ 148 (152)
T 3p8b_B 89 VSGLEPGDLVEVIAGPFKGQK-AKVVKIDESKDEVVVQFI----DAIVPIPVTIKGDYVRLISKL 148 (152)
T ss_dssp TTTCCTTCEEEECSSTTTTCE-EEEEEEETTTTEEEEEES----SCSSCCEEEEEGGGEEEEECC
T ss_pred cccCCCCCEEEEeeecCCCCE-EEEEEEeCCCCEEEEEEE----ecceeEEEEECHHHEEEeccc
Confidence 457899999999999999999 999999999999988733 348888899999999988754
No 14
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.54 E-value=4e-05 Score=49.80 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=29.8
Q ss_pred ccceecCCeEEEeecCCCCeeeceEEEEEccCCEEEE
Q psy10530 59 SMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYI 95 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~V 95 (141)
...+..||.|+|+.|+|+|-+ |+|.+|+.++-+|.|
T Consensus 5 ~~~f~~GD~V~V~~Gpf~g~~-G~V~evd~e~v~V~v 40 (59)
T 2e6z_A 5 SSGFQPGDNVEVCEGELINLQ-GKILSVDGNKITIMP 40 (59)
T ss_dssp CSSCCTTSEEEECSSTTTTCE-EEECCCBTTEEEEEE
T ss_pred cccCCCCCEEEEeecCCCCCE-EEEEEEeCCEEEEEE
Confidence 456889999999999999999 999999986333333
No 15
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=97.20 E-value=0.00071 Score=51.48 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=40.1
Q ss_pred ccceecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEeccCCcEEEecccccce
Q psy10530 59 SMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKC 117 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K~~G~~v~~pIhpSNV 117 (141)
...+..||.|.|+.|.|+|-+ |.|.+|+..+.++.|. |+ -=|...++-+..+.|
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~-G~v~~v~~~k~r~~V~-v~---ifgr~t~vel~~~qv 178 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFN-GVVEEVDYEKSRLKVS-VS---IFGRATPVELDFSQV 178 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEE-EEEEEEETTTTEEEEE-EE---ETTEEEEEEECTTTE
T ss_pred cccCCCCCEEEEeccCCCCcE-EEEEEEeCCCCEEEEE-EE---ECCCCEEEEECHHHE
Confidence 457889999999999999999 9999999988777553 11 125555555555544
No 16
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=96.83 E-value=0.0013 Score=48.59 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=31.6
Q ss_pred ceecCCeEEEeecCCCCeeeceEEEEEccCCEEEEe
Q psy10530 61 PVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIE 96 (141)
Q Consensus 61 ~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VE 96 (141)
| ++||.|.|+.|.|+|.. |+++.++.+++.+.|+
T Consensus 71 P-~~g~~V~Iv~G~~rG~~-g~L~~id~~~~~~~V~ 104 (127)
T 2ckk_A 71 P-APGKRILVLNGGYRGNE-GTLESINEKTFSATIV 104 (127)
T ss_dssp C-CTTCEEEECSSTTTTCE-EEEEEEEGGGTEEEEE
T ss_pred C-CCCCEEEEEecccCCcE-EEEEEEeCCCcEEEEE
Confidence 5 79999999999999999 9999999998888876
No 17
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=96.77 E-value=0.0013 Score=44.62 Aligned_cols=27 Identities=26% Similarity=0.598 Sum_probs=24.9
Q ss_pred eecCCeEEEeecCCCCeeeceEEEEEcc
Q psy10530 62 VRKDDEVQVVRGHYKGQQVGKVVQSYRK 89 (141)
Q Consensus 62 IrkGD~V~Vi~G~~KGk~~GkV~~V~rk 89 (141)
++.||-|+||.|.|.|.. |-|++|+..
T Consensus 18 F~~GDHVkVi~G~~~get-GlVV~v~~d 44 (69)
T 2do3_A 18 FKMGDHVKVIAGRFEGDT-GLIVRVEEN 44 (69)
T ss_dssp CCTTCEEEESSSTTTTCE-EEEEEECSS
T ss_pred ccCCCeEEEeccEEcCce-EEEEEEeCC
Confidence 679999999999999999 999999843
No 18
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=96.09 E-value=0.011 Score=50.21 Aligned_cols=54 Identities=15% Similarity=0.300 Sum_probs=39.4
Q ss_pred ccceecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEeccCCcEEEecccccce
Q psy10530 59 SMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKC 117 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K~~G~~v~~pIhpSNV 117 (141)
...+..||.|.|+.|.|+|-+ |.|.+++..+.++.|. |+ -=|...++-+..+.|
T Consensus 296 ~~~f~~Gd~VrV~~GPF~G~~-G~V~evd~ek~rv~V~-V~---ifGR~tpVeL~~~qV 349 (352)
T 2xhc_A 296 ELGFKVGDMVKIISGPFEDFA-GVIKEIDPERQELKVN-VT---IFGRETPVVLHVSEV 349 (352)
T ss_dssp -CCCCTTCEEEECSSTTTTCE-EEEEEEETTTTEEEEE-EE---ETTEEEEEEEEGGGE
T ss_pred cccCCCCCEEEEeccCCCCcE-EEEEEEcCCCCEEEEE-EE---ECCCcEEEEEchHHE
Confidence 346789999999999999999 9999999988777664 21 125544444444444
No 19
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=95.50 E-value=0.0023 Score=52.01 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred cccceecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEeccCCcEEEecccccce
Q psy10530 58 RSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKC 117 (141)
Q Consensus 58 rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K~~G~~v~~pIhpSNV 117 (141)
..+.+..||.|.|+.|.|.|-+ |.|.+|+..+.++.|. |+ -=|...++-++.|.|
T Consensus 191 ~~~~~~~Gd~V~I~~Gpf~g~~-G~v~ev~~~k~~~~V~-v~---ifgr~tpv~l~~~~v 245 (248)
T 1m1h_A 191 SKVEFEKGDQVRVIEGPFMNFT-GTVEEVHPEKRKLTVM-IS---IFGRMTPVELDFDQV 245 (248)
T ss_dssp ------------------------------------------------------------
T ss_pred ccccCCCCCEEEEeccCCCCcE-EEEEEEeCCCCEEEEE-EE---eCCCcEEEEEcHHHE
Confidence 3667889999999999999999 9999999988776654 11 125444444554443
No 20
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.87 E-value=0.24 Score=33.48 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=25.4
Q ss_pred cCCeEEEeecCCCCeeeceEEEEEccCCEEEEe
Q psy10530 64 KDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIE 96 (141)
Q Consensus 64 kGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VE 96 (141)
.|-+|.|..|.|||.. |.|..+... .+.||
T Consensus 20 iGktV~I~kGpyKG~~-GiVkd~t~~--~~RVE 49 (71)
T 2e70_A 20 IGQTVRISQGPYKGYI-GVVKDATES--TARVE 49 (71)
T ss_dssp TTSEEEECSSTTTTCE-EEEEEECSS--CEEEE
T ss_pred CCCEEEEeccCCCCeE-EEEEECCCC--eEEEE
Confidence 5779999999999999 999988764 56666
No 21
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=91.37 E-value=0.5 Score=35.06 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=45.5
Q ss_pred eecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEeccCCcEEE-ecccccceEEEeCCCC
Q psy10530 62 VRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVY-VGIHPSKCVIVKLKMD 125 (141)
Q Consensus 62 IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K~~G~~v~-~pIhpSNV~i~~l~ld 125 (141)
|..|=.|.|..|.|.|+. ..|+.|.-. +++.|+|.. ++ -.|+.+.+.+|++.++
T Consensus 7 vevGRVv~i~~G~~aGkl-avIVdIID~-nrvLVdGp~--------V~Rq~~n~k~l~LT~~~v~ 61 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKL-AVIVNIINQ-NRILIDGEH--------IVRQVIPIRRVHLTKFQID 61 (126)
T ss_dssp EETTEEEEECSSTTTTEE-EEEEEEETT-TEEEEEETT--------EEEEEEEGGGEEEEEEECT
T ss_pred eecceEEEEccCCccCCE-EEEEEEecC-CeEEEeCCC--------cccceeeccceEEcceecc
Confidence 678989999999999999 899999775 689999864 22 2588899999999887
No 22
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=90.48 E-value=0.29 Score=36.64 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=44.0
Q ss_pred eecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEeccCCcEEEecccccceEEEeCCCC
Q psy10530 62 VRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMD 125 (141)
Q Consensus 62 IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K~~G~~v~~pIhpSNV~i~~l~ld 125 (141)
|..|-.|.|..|.|.|+. ..|+.|.-. +.+.|+|..+.. -.++...+++|+..++
T Consensus 7 vevGRVV~i~~Gr~aGk~-avIV~iiD~-~rvLVdG~~v~R-------k~~n~khL~lT~~~v~ 61 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRL-VVIVDVVDQ-NRALVDAPDMVR-------CQINFKRLSLTDIKID 61 (134)
T ss_dssp CCSSEEEECSCCSSSCCE-EEEEEECSS-SEEEEEETTEEE-------EEEECTTSEEEEEECC
T ss_pred cccCeEEEEeeCCCCCCE-EEEEEEcCC-CeEEEeCCCccc-------eeechhHeEEeCEEEe
Confidence 778999999999999999 999999775 689999874111 2577888888887664
No 23
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=89.02 E-value=0.38 Score=36.22 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=44.8
Q ss_pred eecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEeccCCcEEEecccccceEEEeCCCC
Q psy10530 62 VRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMD 125 (141)
Q Consensus 62 IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K~~G~~v~~pIhpSNV~i~~l~ld 125 (141)
+..|-.|.|..|.|.|+. ..|+.|.-. +.|.|+|-. .|... --++...+++|+..++
T Consensus 15 ve~GrVV~i~~Gr~aGk~-avIV~iiD~-~rVLVDGp~----~gV~R-~~~n~khL~lT~~~v~ 71 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKL-AAIVEIIDQ-KKVLIDGPK----AGVPR-QAINLGQVVLTPLTFA 71 (138)
T ss_dssp SSTTEEEECCSCSSSCCE-EEEEEECSS-SEEEEECSS----SSCCC-EEEECSSSEEEEEECC
T ss_pred cccCeEEEEeeCCCCCCE-EEEEEEecC-CEEEEEcCC----CCccc-ceechhHeEEecEEEE
Confidence 788999999999999999 899999774 789999873 23222 2478888899887664
No 24
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=88.76 E-value=0.45 Score=32.64 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=43.3
Q ss_pred eecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEeccCCcEEEecccccceEEEeCCCC
Q psy10530 62 VRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMD 125 (141)
Q Consensus 62 IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K~~G~~v~~pIhpSNV~i~~l~ld 125 (141)
+..|-.|.+..|.|+|+. ..|+.+.-. +.++|.|... +|. .+--+....+.+|+..++
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~-~vIv~iiD~-~~vlV~g~~~---~~v-~rk~kn~khl~lt~~~i~ 61 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQK-VVVVDIIDK-NFVLVTGAGL---NKV-KRRRMNIKHIEPLPQKID 61 (83)
T ss_dssp CCTTEEEECSSSSSSCCC-EEEEEECSS-SCEEEECCTT---TTC-CCEEESCSSCEEEEEECC
T ss_pred cccCEEEEEeecCCCCCE-EEEEEEcCC-CEEEEECCcc---Ccc-CCeEechHHEEEeeEEEE
Confidence 678999999999999999 899998654 6788887621 233 244577778888876654
No 25
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=88.04 E-value=1.2 Score=36.75 Aligned_cols=71 Identities=11% Similarity=0.242 Sum_probs=50.5
Q ss_pred ccceecCCeEEEeecCCCCeeeceEEEEEccC---CEEEEeeeeEeccCCcEEEecccccceEEEeCC------C--Ch-
Q psy10530 59 SMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKK---FVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLK------M--DK- 126 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk---~~V~VEgvn~~K~~G~~v~~pIhpSNV~i~~l~------l--dk- 126 (141)
-+++..|-.+.|+.|.+-|.. |+|..+.+.. +.|+|+ .++|.+++-.+ |||+++.-. + ++
T Consensus 174 ~ikfe~G~l~mvtgG~n~Gri-G~I~~~e~~~gs~~iV~vk-----d~~g~~F~T~~--~~vfvIG~~~kp~Islp~~kg 245 (260)
T 2xzm_W 174 FAHLESGNVCYIQQGNNIGRV-GIIQHIEKHQGSFDICHVK-----DAKGNAFATRL--GNIFVLGQGKKSWIELPSGDG 245 (260)
T ss_dssp CCBCCSSCEEEECSSTTTTCE-EEEEEEECCCSSCCEEEEE-----CTTCCCEEEEG--GGEEEEESTTCCSSCCSSSSS
T ss_pred EEEecCCCEEEEECCccceeE-EEEEEEEecCCCCcEEEEE-----eCCCCeEEEEE--eeEEEECCCCceeEecCCCCC
Confidence 457889999999999999999 9999876553 345554 46776665555 888887543 3 33
Q ss_pred hHHHHhhhhhh
Q psy10530 127 DRKKIIERRAK 137 (141)
Q Consensus 127 ~R~k~Le~k~~ 137 (141)
-|..++|.+.+
T Consensus 246 i~l~i~eer~~ 256 (260)
T 2xzm_W 246 VRETILEERKR 256 (260)
T ss_dssp CCCCHHHHHHH
T ss_pred eecchhhhhhh
Confidence 35677776654
No 26
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=87.13 E-value=1.1 Score=34.07 Aligned_cols=62 Identities=11% Similarity=0.250 Sum_probs=45.7
Q ss_pred eecCCeEEEeecCCCCeeeceEEEEEccC------CEEEEeeeeEec--cCC---c----------EEEecccccceEEE
Q psy10530 62 VRKDDEVQVVRGHYKGQQVGKVVQSYRKK------FVIYIEKIQRDK--VNG---A----------TVYVGIHPSKCVIV 120 (141)
Q Consensus 62 IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk------~~V~VEgvn~~K--~~G---~----------~v~~pIhpSNV~i~ 120 (141)
++.|-.|.|++|.|.|+. ..|+++.-.. +.+.|.||..-- .+| . ..---++.+-++.|
T Consensus 5 ~kpGrVvivl~Gr~aGkk-aVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl~pT 83 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKK-AVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHIMPT 83 (144)
T ss_dssp CCTTEEEEECSSTTTTCE-EEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGEEEE
T ss_pred ccCCeEEEEecCCcCCCE-EEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeEEEe
Confidence 678889999999999999 8999887653 799999987642 222 1 11123677888888
Q ss_pred eCCC
Q psy10530 121 KLKM 124 (141)
Q Consensus 121 ~l~l 124 (141)
...+
T Consensus 84 ry~v 87 (144)
T 4a18_N 84 RYSV 87 (144)
T ss_dssp EEEC
T ss_pred eEEe
Confidence 7665
No 27
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=82.12 E-value=1 Score=28.82 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=20.3
Q ss_pred ccCCHHHHHhhCCcccceecCCeEEEeec
Q psy10530 45 APLSKELRQKYNVRSMPVRKDDEVQVVRG 73 (141)
Q Consensus 45 apLSkeLr~ky~~rs~~IrkGD~V~Vi~G 73 (141)
-.|++|+|+++| |+.||.|.+.--
T Consensus 24 ItIPkeiR~~Lg-----i~~Gd~l~i~~~ 47 (59)
T 1yfb_A 24 VVIPIELRRTLG-----IAEKDALEIYVD 47 (59)
T ss_dssp EECCHHHHHHTT-----CCTTCEEEEEEE
T ss_pred EEeCHHHHHHcC-----CCCCCEEEEEEE
Confidence 358999999998 899999988763
No 28
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=81.73 E-value=1 Score=31.44 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=42.3
Q ss_pred eecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEeccCCcEEEecccccceEEEeCCCC
Q psy10530 62 VRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMD 125 (141)
Q Consensus 62 IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K~~G~~v~~pIhpSNV~i~~l~ld 125 (141)
+..|-.|.+.+|.|+|+. -.|+++.- .+.++|.|.... ++ ..+--++...|++|+...|
T Consensus 4 v~~GrVv~~~~Gr~~Gk~-~VIv~~iD-~~~vLV~gp~~~--~~-~~rk~~n~khl~~T~~~vd 62 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSK-CVIVDIID-DNFVLVTGPKDI--TG-VKRRRVNILHLEPTDKKID 62 (96)
T ss_dssp SSTTEEEECSSSSTTCCE-EEEEEECS-SSCEEEECCTTT--TC-CCCEEESCSSCEEEEEECC
T ss_pred cccCEEEEEeecCCCCCE-EEEEEEeC-CCEEEEECCccc--CC-cCCEEEchHHEEEeeEEEe
Confidence 678999999999999999 88888864 468888876311 11 1224577778888776554
No 29
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=81.24 E-value=1.2 Score=30.07 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=30.4
Q ss_pred eecCCeEEEeecC--CCCeeeceEEEEEccC----CEEEEeeeeEe
Q psy10530 62 VRKDDEVQVVRGH--YKGQQVGKVVQSYRKK----FVIYIEKIQRD 101 (141)
Q Consensus 62 IrkGD~V~Vi~G~--~KGk~~GkV~~V~rkk----~~V~VEgvn~~ 101 (141)
|.+|+.|.|++=. +=+.+ |.|..|+..+ -.|..|++|..
T Consensus 2 i~rGs~VrIlr~eSywy~~v-G~V~~Vd~~~~~ypV~VrFekvNy~ 46 (70)
T 1qp2_A 2 VQRGSKVRILRPESYWFQDV-GTVASVDQSGIKYPVIVRFEKVNYS 46 (70)
T ss_dssp CCTTCEEEECCTTSTTTTCE-EEEEEECCSSCSCSEEEECSSCCSS
T ss_pred cCCCCEEEEcCccceeecce-eEEEEEeCCCcEeeEEEEecccccc
Confidence 7899999999976 45777 9999999975 34555777663
No 30
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=75.84 E-value=2.9 Score=25.63 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=20.6
Q ss_pred ccCCHHHHHhhCCcccceecCCeEEEeecC
Q psy10530 45 APLSKELRQKYNVRSMPVRKDDEVQVVRGH 74 (141)
Q Consensus 45 apLSkeLr~ky~~rs~~IrkGD~V~Vi~G~ 74 (141)
-.|++|+|+++| |..||+|.+.--.
T Consensus 14 i~IPk~ir~~lg-----i~~Gd~v~i~~~~ 38 (53)
T 2l66_A 14 VTIPAKVRQKFQ-----IKEGDLVKVTFDE 38 (53)
T ss_dssp BCCCHHHHHHSC-----CCTTCEEEEEECS
T ss_pred EEeCHHHHHHcC-----cCCCCEEEEEEEC
Confidence 358999999998 8899999887543
No 31
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=75.58 E-value=0.0085 Score=44.43 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=21.4
Q ss_pred ccceecCCeEEEeecCCCCeeeceEEEEEccC
Q psy10530 59 SMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKK 90 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk 90 (141)
...+..||.|.|+.|.|+|-+ |.|.+++.++
T Consensus 107 ~~~~~~Gd~V~V~~Gpf~g~~-g~v~~v~~~k 137 (162)
T 2oug_A 107 PATPYPGDKVIITEGAFEGFQ-AIFTEPDGEA 137 (162)
T ss_dssp --------CTTHHHHHHHHHH-HHTTCSSHHH
T ss_pred cCCCCCCCEEEEcccCCCCcE-EEEEEECCCC
Confidence 355789999999999999999 9999998764
No 32
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=75.03 E-value=4.4 Score=33.39 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=41.6
Q ss_pred ccceecCCeEEEeecCCCCeeeceEEEEEccCC---EEEEeeeeEeccCCcEEEecccccceEEEeC
Q psy10530 59 SMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKF---VIYIEKIQRDKVNGATVYVGIHPSKCVIVKL 122 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~---~V~VEgvn~~K~~G~~v~~pIhpSNV~i~~l 122 (141)
.+++..|-.+.|+.|.+-|.. |+|..+.+..+ .|+|+ -++|.++ --..|||+++.-
T Consensus 172 ~ikfe~Gnl~mvtgG~n~Gri-G~I~~ie~~~gs~~iV~vk-----d~~g~~F--~T~~~nvfvIGk 230 (265)
T 3iz6_D 172 FIKFDVGNVVMVTGGRNTGRV-GVIKNREKHKGSFETIHVE-----DALGHQF--ATRLGNVFTIGK 230 (265)
T ss_dssp EECCSTTCEEEECSSSSCSCE-EEEEEEECCSSSCCEEEEC-----CCSSCCE--EEEGGGEEEEEC
T ss_pred EEEccCCCEEEEEcCCcceEE-EEEEEEEEecCCCcEEEEE-----ECCCCeE--EEEeCeEEEEcc
Confidence 467888999999999999999 99999988544 55554 4456543 345677777654
No 33
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P
Probab=71.76 E-value=2.2 Score=32.70 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=31.0
Q ss_pred eccCCHHHHHhhCCcccceecCCeEEEee----------cCCCCeeeceEEEEEccCCEEEEe
Q psy10530 44 SAPLSKELRQKYNVRSMPVRKDDEVQVVR----------GHYKGQQVGKVVQSYRKKFVIYIE 96 (141)
Q Consensus 44 sapLSkeLr~ky~~rs~~IrkGD~V~Vi~----------G~~KGk~~GkV~~V~rkk~~V~VE 96 (141)
..|||.-|+. .++||.|-|.- -.|-|++ |.|..|...-.-|+|+
T Consensus 24 ~~plstym~~--------yk~GD~VdIk~~gsVqKGmPHk~YHGkT-GrV~nvtq~AvgiiVn 77 (157)
T 4a17_P 24 HVRISRYLTT--------YKVGEYVDIMVDGSQHKGMPYKLYHGRT-GKVFNVNPRSIGVIVH 77 (157)
T ss_dssp CCCHHHHHCC--------CCTTCEEEECCCSSCCTTCCCGGGTTEE-EEEEEECSSEEEEEEE
T ss_pred CCCHHHHHHH--------hcCCCEEEEeccCceecCCCCccccCCc-ccEeeecCeEEEEEEE
Confidence 3688887777 78999998742 1256898 9999887654444443
No 34
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=71.33 E-value=2.9 Score=28.84 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=18.6
Q ss_pred cCCHHHHHhhCCcccceecCCeEEEee
Q psy10530 46 PLSKELRQKYNVRSMPVRKDDEVQVVR 72 (141)
Q Consensus 46 pLSkeLr~ky~~rs~~IrkGD~V~Vi~ 72 (141)
.|++|+|+.+| |+.||.|.++.
T Consensus 63 tIPkeiR~~lg-----i~~Gd~l~~~~ 84 (92)
T 2glw_A 63 IIPKALRDVIG-----IKPGEVIEVLL 84 (92)
T ss_dssp ECCHHHHHHHT-----CCTTCEEEEEE
T ss_pred ECcHHHHHHcC-----CCCCCEEEEEE
Confidence 46899999998 89999998753
No 35
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=70.44 E-value=7.3 Score=27.47 Aligned_cols=53 Identities=17% Similarity=0.358 Sum_probs=37.6
Q ss_pred cCCCCccceeeeeccCCHHHHHhhCCcccceecCCeEEEee------cC----CCCeeeceEEEEEccCCEEEEe
Q psy10530 32 FNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVR------GH----YKGQQVGKVVQSYRKKFVIYIE 96 (141)
Q Consensus 32 ~nAp~h~r~k~msapLSkeLr~ky~~rs~~IrkGD~V~Vi~------G~----~KGk~~GkV~~V~rkk~~V~VE 96 (141)
|.-|.-.+. ..|||.-|+. .++||.|-|.- |- |-|++ |.|..|...-.-|.|.
T Consensus 15 fsr~fR~~G---~~pls~~m~~--------yk~Gd~VdIk~~~svqKGmPhk~yHGkT-G~V~~v~~~AvgV~Vn 77 (96)
T 1vq8_Q 15 LKNKPRDRG---TSPPQRAVEE--------FDDGEKVHLKIDPSVPNGRFHPRFDGQT-GTVEGKQGDAYKVDIV 77 (96)
T ss_dssp TSCCGGGCS---SCCSHHHHCC--------CCTTCEEEECCCTTCCSSCCCGGGTTCE-EEEEEEETTEEEEEEE
T ss_pred hCCCccccC---CCCHHHHHHH--------cCCCCEEEEEecCCccCCCCcccCCCCC-eEEEeECCCEEEEEEe
Confidence 444443333 5689998887 78999998763 32 45888 9999998876666664
No 36
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=67.35 E-value=4.3 Score=33.33 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=42.1
Q ss_pred ccceecCCeEEEeecCCCCeeeceEEEEEccCC---EEEEeeeeEeccCCcEEEecccccceEEEeC
Q psy10530 59 SMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKF---VIYIEKIQRDKVNGATVYVGIHPSKCVIVKL 122 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~---~V~VEgvn~~K~~G~~v~~pIhpSNV~i~~l 122 (141)
.+++..|-.+.|+.|.+-|.. |+|..+.+..+ .|+|+ -++|.++ --..|||+++.-
T Consensus 172 ~ikfe~Gnl~mvtgG~n~Gri-G~I~~ie~~~gs~~iV~vk-----d~~g~~F--~T~~~nvfvIGk 230 (261)
T 3u5c_E 172 FIKFDAGKLVYVTGGRNLGRI-GTIVHKERHDGGFDLVHIK-----DSLDNTF--VTRLNNVFVIGE 230 (261)
T ss_dssp EECCCSSCCEEECSSTTTTCB-CCCCEEECCTTSCCEEEEE-----CTTSCEE--EEEGGGEEECCS
T ss_pred EEEccCCCEEEEEcCCcceEE-EEEEEEEEecCCCcEEEEE-----ECCCCeE--EEEeCeEEEEcc
Confidence 467888999999999999999 99999988544 45554 4567643 345678887654
No 37
>3iz5_U 60S ribosomal protein L21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_U
Probab=67.12 E-value=3.3 Score=31.92 Aligned_cols=44 Identities=27% Similarity=0.474 Sum_probs=33.1
Q ss_pred eccCCHHHHHhhCCcccceecCCeEEEee------c----CCCCeeeceEEEEEccCCEEEEe
Q psy10530 44 SAPLSKELRQKYNVRSMPVRKDDEVQVVR------G----HYKGQQVGKVVQSYRKKFVIYIE 96 (141)
Q Consensus 44 sapLSkeLr~ky~~rs~~IrkGD~V~Vi~------G----~~KGk~~GkV~~V~rkk~~V~VE 96 (141)
..|||.-|+. .++||.|-|.- | .|-|++ |.|..|...-.-|.|.
T Consensus 24 ~~plstym~~--------yk~GD~VdIk~~gsVqKGmPHk~YHGkT-GrV~nvt~~AvgV~Vn 77 (164)
T 3iz5_U 24 YIPLTTYLRT--------YKVGEHVDVKVNGAVHKGMPHKFYHGRT-GRVWNVTKRAIGVEIN 77 (164)
T ss_dssp CCCTHHHHCC--------CCTTCEEEECCCTTCCSSCCCGGGTTEE-EEEEEECSSSEEEEEE
T ss_pred CCCHHHHHHH--------hCCCCEEEEEccCcccCCCCCcccCCCC-eeEEeecCCEEEEEEE
Confidence 4689988877 78999998752 2 256898 9999998766666654
No 38
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.01 E-value=7.2 Score=27.54 Aligned_cols=43 Identities=26% Similarity=0.546 Sum_probs=31.8
Q ss_pred eccCCHHHHHhhCCcccceecCCeEEEee------c----CCCCeeeceEEEEEccCCEEEE
Q psy10530 44 SAPLSKELRQKYNVRSMPVRKDDEVQVVR------G----HYKGQQVGKVVQSYRKKFVIYI 95 (141)
Q Consensus 44 sapLSkeLr~ky~~rs~~IrkGD~V~Vi~------G----~~KGk~~GkV~~V~rkk~~V~V 95 (141)
..|||.-|+. .++||.|-|.- | .|-|++ |.|..|...-.-|.|
T Consensus 25 ~~pls~~m~~--------yk~Gd~VdIk~~gsvqKGmPhk~yHGkT-G~V~~vt~~Avgv~V 77 (97)
T 3j21_R 25 LPPLTRFLQE--------FEVGQRVHIVIEPSYHKGMPDPRFHGRT-GTVVGKRGEAYIVEI 77 (97)
T ss_dssp SCCHHHHHCC--------CCTTCEEEECCCTTCCSSCCCGGGTTCE-EEEEEEETTEEEEEE
T ss_pred CCcHHHHHHH--------hcCCCEEEEEecCceEcCCCCcccCCCC-eEEEeecCcEEEEEE
Confidence 4789988877 78999998742 2 256898 999999876555554
No 39
>3izc_U 60S ribosomal protein RPL21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_U 3o58_T 3o5h_T 3u5e_T 3u5i_T 4b6a_T
Probab=62.10 E-value=2.5 Score=32.51 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=31.8
Q ss_pred eccCCHHHHHhhCCcccceecCCeEEEee------c----CCCCeeeceEEEEEccCCEEEEe
Q psy10530 44 SAPLSKELRQKYNVRSMPVRKDDEVQVVR------G----HYKGQQVGKVVQSYRKKFVIYIE 96 (141)
Q Consensus 44 sapLSkeLr~ky~~rs~~IrkGD~V~Vi~------G----~~KGk~~GkV~~V~rkk~~V~VE 96 (141)
..|||.-|+. .++||.|-|.- | .|-|++ |.|..|...-.-|+|+
T Consensus 24 ~~plstym~~--------yk~GD~VdIk~~gsVqKGmPHk~YHGkT-GrV~nvtq~AvgiiVn 77 (160)
T 3izc_U 24 AVHLSTYLKV--------YKVGDIVDIKANGSIQKGMPHKFYQGKT-GVVYNVTKSSVGVIIN 77 (160)
T ss_dssp CCCHHHHHCC--------CCTTCEEEECCCTTCCSSCCCGGGTTCE-EEEEEECSSSEEEEEC
T ss_pred CCCHHHHHHH--------hcCCCEEEEeccCccCCCCCCcccCCCC-eEEEeeCCcEEEEEEE
Confidence 3688887777 78999998742 1 256898 9999987765445553
No 40
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=61.53 E-value=11 Score=25.66 Aligned_cols=38 Identities=18% Similarity=0.469 Sum_probs=27.5
Q ss_pred eecCCeEEEeecC--CCCeeeceEEEEEcc---CCEEEE--eeeeE
Q psy10530 62 VRKDDEVQVVRGH--YKGQQVGKVVQSYRK---KFVIYI--EKIQR 100 (141)
Q Consensus 62 IrkGD~V~Vi~G~--~KGk~~GkV~~V~rk---k~~V~V--Egvn~ 100 (141)
|++||.|.|+|=. +=... |+|..||.. ++-|+| |.||-
T Consensus 1 i~RGskVrIlR~ESYWyn~v-GtVasVD~s~gi~YPV~VRFdkVNY 45 (75)
T 1jb0_E 1 VQRGSKVKILRPESYWYNEV-GTVASVDQTPGVKYPVIVRFDKVNY 45 (75)
T ss_dssp CCTTCEEEECCTTCTTBTCE-EEEEEECCCTTCSCCEEEECSSCCS
T ss_pred CCCCCEEEEccccceeecCc-ceEEEEecCCCccccEEEEEeeecc
Confidence 5789999999976 33555 999999996 454554 44543
No 41
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.07 E-value=9.4 Score=30.94 Aligned_cols=57 Identities=23% Similarity=0.281 Sum_probs=42.8
Q ss_pred cccceecCCeEEEeecCCCCeeeceEEEEEcc----CCEEEEeeeeEeccCCcEEEecccccceEEEeC
Q psy10530 58 RSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRK----KFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKL 122 (141)
Q Consensus 58 rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rk----k~~V~VEgvn~~K~~G~~v~~pIhpSNV~i~~l 122 (141)
--+++..|-.+.|+.|.+-|.. |+|..+.+. -+.|+|++ ++|.+++ ...|||+++.-
T Consensus 175 d~ikf~~G~l~mvtgG~n~Gri-G~I~~ie~~~gs~~~~V~v~d-----~~g~~F~--T~~~~vfvIGk 235 (243)
T 3j20_E 175 EVLPFEKGAYVFVTQGKNVARK-GRIVEIKRFPMGWPDVVTIED-----EEGELFD--TLKEYAFVVGT 235 (243)
T ss_dssp EEEECCTTCEEEECSSSSTTCE-EEEEECCCCCSSSCCEEEEEE-----SSCCCEE--EETTTEEEEES
T ss_pred eEEeccCCCEEEEECCccceEE-EEEEEEEEecCCCceEEEEEc-----CCCCEEE--EEeceEEEECC
Confidence 3467889999999999999999 999999763 35677764 3565443 44678887763
No 42
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=56.19 E-value=7.7 Score=25.36 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.0
Q ss_pred eeccCCHHHHHhhCCcccceecCCeEEEee
Q psy10530 43 MSAPLSKELRQKYNVRSMPVRKDDEVQVVR 72 (141)
Q Consensus 43 msapLSkeLr~ky~~rs~~IrkGD~V~Vi~ 72 (141)
..-.|++++++++| |..||+|.|..
T Consensus 13 ~~v~iPk~~~~~lg-----l~~gd~v~i~~ 37 (82)
T 1mvf_D 13 PAVRIPATLMQALN-----LNIDDEVKIDL 37 (82)
T ss_dssp EEEECCHHHHHHTT-----CCTTCBEEEEE
T ss_pred cEEEECHHHHHHcC-----CCCCCEEEEEE
Confidence 45579999999888 78999998876
No 43
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=54.06 E-value=11 Score=29.90 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=31.8
Q ss_pred cccceecCCeEEEeecCCCCeeeceEEEEEccC----CEEEEe
Q psy10530 58 RSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKK----FVIYIE 96 (141)
Q Consensus 58 rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk----~~V~VE 96 (141)
--+++..|-.+.|+.|..-|.. |+|..+.+.. +.|+|+
T Consensus 135 d~ikf~~G~l~mvtgG~n~Gri-G~I~~ie~~~gs~~~iV~v~ 176 (213)
T 3kbg_A 135 EIIKMQPGNKAYITAGSHVNQT-GTISKIEAKEGSSANLVHFQ 176 (213)
T ss_dssp EEECCSTTCEEEECSSTTTTCE-EEEEEECCCSCC--CEEEET
T ss_pred eEEEcCCCCEEEEECCCcceEE-EEEEEEEEccCCCCCEEEEE
Confidence 3468889999999999999999 9999998643 457776
No 44
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=53.60 E-value=41 Score=23.61 Aligned_cols=64 Identities=9% Similarity=0.166 Sum_probs=36.8
Q ss_pred eecCCeEEEeecCC--CC----eeeceEEEEEccC--CEEEEeeeeEeccCCcEEEecccccceEEEeCC-CChhH
Q psy10530 62 VRKDDEVQVVRGHY--KG----QQVGKVVQSYRKK--FVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLK-MDKDR 128 (141)
Q Consensus 62 IrkGD~V~Vi~G~~--KG----k~~GkV~~V~rkk--~~V~VEgvn~~K~~G~~v~~pIhpSNV~i~~l~-ldk~R 128 (141)
++.||+|.|----- |. - .|.|++..... ..+.|..+ ...-|-+.-+|+|..++.=++.- .++.|
T Consensus 4 f~~GDtv~V~~~i~g~k~R~q~F-~GvvI~~~~~G~~~tftvRki--~~gvGVEr~fpl~SP~I~~IeV~r~gkvR 76 (98)
T 2ftc_K 4 FYVGSILRVTTADPYASGKISQF-LGICIQRSGRGLGATFILRNV--IEGQGVEICFELYNPRVQEIQVVKLEKRL 76 (98)
T ss_pred cCCCCEEEEEEEECCCceEeeeE-EEEEEEEECCCCCcEEEEEEe--ccCceEEEEEecCCCceeEEEEEEcCccc
Confidence 67899998864322 22 2 37777765543 23444433 11224566789999988755543 34443
No 45
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=52.32 E-value=9.4 Score=29.51 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=20.1
Q ss_pred cCCHHHHHhhCCcccceecCCeEEEeecC
Q psy10530 46 PLSKELRQKYNVRSMPVRKDDEVQVVRGH 74 (141)
Q Consensus 46 pLSkeLr~ky~~rs~~IrkGD~V~Vi~G~ 74 (141)
.|++|+|+.+| |+.||.|.+..-.
T Consensus 17 tIPkeiR~~Lg-----I~~GD~l~~~~~~ 40 (178)
T 2w1t_A 17 VIPKEIRRTLR-----IREGDPLEIFVDR 40 (178)
T ss_dssp ECCHHHHHHTT-----CCTTCEEEEEECT
T ss_pred EEcHHHHHHcC-----cCCCCEEEEEEeC
Confidence 58999999998 7899999887643
No 46
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=49.31 E-value=19 Score=23.90 Aligned_cols=57 Identities=23% Similarity=0.163 Sum_probs=42.0
Q ss_pred ceecCCeEEEeecC--CCCeeeceEEEEEccCCEEEEeeeeEeccCCcEEEecccccceEEEeCCC
Q psy10530 61 PVRKDDEVQVVRGH--YKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKM 124 (141)
Q Consensus 61 ~IrkGD~V~Vi~G~--~KGk~~GkV~~V~rkk~~V~VEgvn~~K~~G~~v~~pIhpSNV~i~~l~l 124 (141)
+|-.|-.|.|+.-. |-|-+ |.|.+|...+--|..||=|+.| -+-+.+|.+...+..+
T Consensus 1 ~ilPG~~V~V~np~~~Yy~y~-G~VQRvsdgkaaVLFEGGnWDK------LVTf~L~eLe~~~~~~ 59 (66)
T 2jz2_A 1 MIFPGATVRVTNVDDTYYRFE-GLVQRVSDGKAAVLFENGNWDK------LVTFRLSELEAVKPIL 59 (66)
T ss_dssp CCCTTCEEEECCTTSTTBTCE-EEEEEEETTEEEEEEESSSCEE------EEEEESTTEEECCCCC
T ss_pred CccCCCEEEEeCCCCccccee-EEEEEecCCcEEEEecCCCcee------EEEEEhhHceeccccc
Confidence 36678899998776 67898 9999999988889999766654 3445556665555443
No 47
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=49.00 E-value=18 Score=25.45 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=33.4
Q ss_pred eeccCCHHHHHhhCCcccceecCCeEEEeecCCC-CeeeceEEEEEccC
Q psy10530 43 MSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYK-GQQVGKVVQSYRKK 90 (141)
Q Consensus 43 msapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~K-Gk~~GkV~~V~rkk 90 (141)
.-|.+|--+|+ .+.|+.||.|.|---+|- -.. |.|+.++...
T Consensus 45 ~la~i~GKmRk-----~IwI~~GD~VlVe~~~yd~~~K-g~Iv~r~~~d 87 (102)
T 1jt8_A 45 RLGRIPGRLKN-----RIWVREGDVVIVKPWEVQGDQK-CDIIWRYTKT 87 (102)
T ss_dssp EEEECCHHHHH-----HHCCCSCEEEEECCBCCTTSEE-EEEEEESSCS
T ss_pred EEEEEccccee-----eEEecCCCEEEEEeccCCCCce-EEEEEEeCHH
Confidence 45888888886 578999999999877776 566 9998887653
No 48
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=47.95 E-value=25 Score=29.22 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=25.2
Q ss_pred cCCeEEEeecCCCCeeeceEEEEEccCCEEEE
Q psy10530 64 KDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYI 95 (141)
Q Consensus 64 kGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~V 95 (141)
.|.+..|++|+-||.. |.|+.=-=--+.|+|
T Consensus 86 iGN~A~VvSG~AKG~~-G~VtGkHGGieHVlV 116 (284)
T 3dcl_A 86 IGNEVIVMSGDAKGSR-GFVTGKHGGVNHVLV 116 (284)
T ss_dssp BTCEEEECSSTTTTCE-EEEEEEETTTTEEEE
T ss_pred cCceeEEeecccCCCc-ceEecccCCeeeEEE
Confidence 6999999999999999 999875554455655
No 49
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=46.90 E-value=12 Score=23.31 Aligned_cols=19 Identities=5% Similarity=0.148 Sum_probs=14.4
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-.+.|
T Consensus 19 eLsf~~Gd~i~v~~~~~~~ 37 (68)
T 2ew3_A 19 ELGFKEGDIITLTNQIDEN 37 (68)
T ss_dssp BCCBCTTCEEEEEEESSSS
T ss_pred ccCCCCCCEEEEEEecCCC
Confidence 3568999999999855444
No 50
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=46.85 E-value=65 Score=23.20 Aligned_cols=71 Identities=23% Similarity=0.278 Sum_probs=42.2
Q ss_pred HHHHHhhCCcccc-eecCCeEEEee----cCCC---CeeeceEEEEEccC--CEEEEeeeeEeccCCcEEEecccccceE
Q psy10530 49 KELRQKYNVRSMP-VRKDDEVQVVR----GHYK---GQQVGKVVQSYRKK--FVIYIEKIQRDKVNGATVYVGIHPSKCV 118 (141)
Q Consensus 49 keLr~ky~~rs~~-IrkGD~V~Vi~----G~~K---Gk~~GkV~~V~rkk--~~V~VEgvn~~K~~G~~v~~pIhpSNV~ 118 (141)
+++.+++-...+| ++.||+|.|-- |.-. -- .|.|++..... ..+.|..+ ...-|-+.-+|+|..++.
T Consensus 5 ~~~e~~~~~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F-~GvvI~~~~~G~~~tftvRki--~~gvGVEr~fpl~SP~I~ 81 (114)
T 3r8s_P 5 KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAF-EGVVIAIRNRGLHSAFTVRKI--SNGEGVERVFQTHSPVVD 81 (114)
T ss_dssp HHHHGGGCCSCCCCCCTTCEEEEEEEEEETTEEEEEEE-EEEEEEEECCGGGCEEEEEEE--ETTEEEEEEEETTCTTEE
T ss_pred HHHHHHHhccCCCccCCCCEEEEEEEEecCCceeeeeE-EEEEEEEECCCCCeEEEEEEe--cCCccEEEEEecCCCccc
Confidence 4455555555553 89999998853 3211 12 37787776543 24555544 112245666899999987
Q ss_pred EEeC
Q psy10530 119 IVKL 122 (141)
Q Consensus 119 i~~l 122 (141)
=++.
T Consensus 82 ~IeV 85 (114)
T 3r8s_P 82 SISV 85 (114)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5554
No 51
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=46.49 E-value=17 Score=21.29 Aligned_cols=19 Identities=26% Similarity=0.590 Sum_probs=14.8
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
.+.+++||.|.|+.-...|
T Consensus 17 eLs~~~Gd~i~v~~~~~~g 35 (58)
T 1zuy_A 17 ELPLKKGDVIYITREEPSG 35 (58)
T ss_dssp BCCBCTTCEEEEEEECTTS
T ss_pred cCCCCCCCEEEEEEecCCC
Confidence 4668999999999876544
No 52
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe protein, PSI, protein structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: b.129.2.1
Probab=46.36 E-value=11 Score=26.65 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=15.3
Q ss_pred cCCHHHHHhhCCcccceecCCeEEEe
Q psy10530 46 PLSKELRQKYNVRSMPVRKDDEVQVV 71 (141)
Q Consensus 46 pLSkeLr~ky~~rs~~IrkGD~V~Vi 71 (141)
||++++|++-| +..||+|.|.
T Consensus 80 pvk~~vRka~g-----~~~GD~V~V~ 100 (104)
T 2d9r_A 80 GLRQDIRRAIG-----KQPGDSVYVT 100 (104)
T ss_dssp EECHHHHHHHT-----CCTTSEEEEE
T ss_pred EecHHHHHHcC-----CCCCCEEEEE
Confidence 67788887766 6678877763
No 53
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=46.08 E-value=68 Score=24.61 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=42.8
Q ss_pred CCHHHHHhhCC----ccc-ceecCCeEEEeecCCCCe------eeceEEEEEccC--CEEEEeeeeEeccCCcEEEeccc
Q psy10530 47 LSKELRQKYNV----RSM-PVRKDDEVQVVRGHYKGQ------QVGKVVQSYRKK--FVIYIEKIQRDKVNGATVYVGIH 113 (141)
Q Consensus 47 LSkeLr~ky~~----rs~-~IrkGD~V~Vi~G~~KGk------~~GkV~~V~rkk--~~V~VEgvn~~K~~G~~v~~pIh 113 (141)
|-++|-+++-. +.+ .++.||+|.|--=---|. -.|.|+...... ..+.|..+ ...-|-+.-+|+|
T Consensus 7 li~~le~eqlk~l~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRki--s~GvGVER~Fplh 84 (166)
T 2zjr_M 7 INRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKI--SFGEGVERVFPFA 84 (166)
T ss_dssp CCHHHHHHHTTGGGCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEE--ETTEEEEEEEETT
T ss_pred HHHHHHHHHHhhccccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEe--cCCeeEEEEEecC
Confidence 56666555533 344 389999999874322221 137777665432 24555443 1112456678999
Q ss_pred ccceEEEeC
Q psy10530 114 PSKCVIVKL 122 (141)
Q Consensus 114 pSNV~i~~l 122 (141)
..+|.=++.
T Consensus 85 SP~I~kIEV 93 (166)
T 2zjr_M 85 SPLVNQVTI 93 (166)
T ss_dssp CTTEEEEEE
T ss_pred CCccceEEE
Confidence 999875554
No 54
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=45.58 E-value=40 Score=26.50 Aligned_cols=48 Identities=10% Similarity=0.161 Sum_probs=34.9
Q ss_pred cCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEccCCEEEE
Q psy10530 46 PLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYI 95 (141)
Q Consensus 46 pLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~V 95 (141)
.|+.| ...|=.+-++++.||.|.|.-|...=- .++|..+.++.-.+.|
T Consensus 19 ~L~~~-~~~Hl~~VLR~~~Gd~v~l~dg~g~~~-~a~I~~i~~~~~~~~i 66 (251)
T 4e8b_A 19 ALCED-AANHIGRVLRMGPGQALQLFDGSNQVF-DAEITSASKKSVEVKV 66 (251)
T ss_dssp ECCHH-HHHHHHTTSCCCSCCEEEEECSSSEEE-EEEEEEECSSCEEEEE
T ss_pred EeCHH-HHHHHHHhCcCCCCCEEEEEeCCCcEE-EEEEEEeecceEEEEE
Confidence 46655 455667888999999999998873323 4889999877655544
No 55
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=45.35 E-value=69 Score=25.07 Aligned_cols=48 Identities=10% Similarity=0.049 Sum_probs=33.9
Q ss_pred cCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEccCCEEEEe
Q psy10530 46 PLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIE 96 (141)
Q Consensus 46 pLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VE 96 (141)
.|+.|--. |= +-++++.||.|.|.-|.-.-- .++|..+.++.-.+.|.
T Consensus 27 ~L~~~~~~-Hl-~VLRl~~Gd~v~l~dg~G~~~-~a~I~~~~~~~~~~~i~ 74 (234)
T 1z85_A 27 IFDEREAH-HM-RVVRLKEGDVIEATDGNGFSY-TCILKSLKKKTAAAKIV 74 (234)
T ss_dssp EECHHHHH-HH-HHTTCCTTCEEEEECSBSEEE-EEEEEEECSSCEEEEEE
T ss_pred EeCHHHHH-HH-HhhcCCCCCEEEEEeCCCCEE-EEEEEEecCCEEEEEEE
Confidence 46665544 44 889999999999998763323 37888888776555554
No 56
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=44.58 E-value=15 Score=21.87 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=14.3
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-.+.|
T Consensus 20 eLs~~~Gd~i~v~~~~~~~ 38 (59)
T 2g6f_X 20 ELSFSKGDVIHVTRVEEGG 38 (59)
T ss_dssp BCCBCTTCEEEEEEECTTS
T ss_pred CcCCCCCCEEEEEEecCCC
Confidence 4568999999999855443
No 57
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=44.49 E-value=21 Score=28.07 Aligned_cols=55 Identities=11% Similarity=0.240 Sum_probs=38.4
Q ss_pred eecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEeccCCc-----------EEEecccccceEEE
Q psy10530 62 VRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGA-----------TVYVGIHPSKCVIV 120 (141)
Q Consensus 62 IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K~~G~-----------~v~~pIhpSNV~i~ 120 (141)
|..|..|+|++|.|.|+. ..+++... .+.+.|-|- .+-||. .-..-|+.|||-+.
T Consensus 45 i~pGtVlIiL~Gr~~GKr-vV~LKql~-sgllLVtGP--~~vn~vplrrvn~~~vi~TstkvDis~vki~ 110 (191)
T 4a18_E 45 IAPGTVLILLAGRFRGKR-VVFLKQLK-SGLLLVTGP--YKVNGVPLKRVNQAYTLSTSTKVDLTGVNTA 110 (191)
T ss_dssp CCTTEEEEECSSTTTTBE-EEEEEECT-TSCEEEECC--TTTSSCCSEEECGGGEEEEEEECCCTTCCGG
T ss_pred ccCCCEEEEeccccCCCE-EEEEEecC-CCeEEEecC--ccccCCceEEEeeeeEEeeeeEeeccccccc
Confidence 778999999999999999 77777765 477888772 112221 12345778888763
No 58
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=44.46 E-value=4.8 Score=30.87 Aligned_cols=53 Identities=26% Similarity=0.464 Sum_probs=37.0
Q ss_pred cCCCCccceeeeeccCCHHHHHhhCCcccceecCCeEEEee------c----CCCCeeeceEEEEEccCCEEEEe
Q psy10530 32 FNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVR------G----HYKGQQVGKVVQSYRKKFVIYIE 96 (141)
Q Consensus 32 ~nAp~h~r~k~msapLSkeLr~ky~~rs~~IrkGD~V~Vi~------G----~~KGk~~GkV~~V~rkk~~V~VE 96 (141)
|.=|.-.+. ..|||.-|+. .++||.|-|.- | .|-|++ |.|..|...-..|+|.
T Consensus 15 fsr~fRk~G---~~plst~m~~--------yk~GD~VdIk~~~svqKGmPhk~yHGkT-GrV~~v~~~AvgViVn 77 (160)
T 2zkr_q 15 FSRPFRKHG---VVPLATYMRI--------YKKGDIVDIKGMGTVQKGMPHKCYHGKT-GRVYNVTQHAVGIIVN 77 (160)
T ss_dssp HSCCTTTCS---CCCHHHHHCC--------CCTTCEEEECCCTTCCSSCCCGGGTTCE-EEECCCCSSSEEEEEE
T ss_pred hCCCccccC---CCcHHHHHHH--------cCCCCEEEEEecCCcccCCCCcccCCCC-eEEEeEcCCEEEEEEE
Confidence 444444444 5689988877 78999997653 3 255888 9998887766666665
No 59
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=43.59 E-value=15 Score=22.53 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=14.3
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-...|
T Consensus 19 eLsf~~Gd~i~v~~~~~~~ 37 (67)
T 2bzy_A 19 ALALEVGDIVKVTRMNING 37 (67)
T ss_dssp BCCBCTTCEEEEEEECSSS
T ss_pred ccccCCCCEEEEEEecCCC
Confidence 4668999999998754443
No 60
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=43.42 E-value=66 Score=25.47 Aligned_cols=50 Identities=16% Similarity=0.227 Sum_probs=35.6
Q ss_pred eccCCHHHHHhhCCcccceecCCeEEEeecCCCCee-eceEEEEEccCCEEEEe
Q psy10530 44 SAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQ-VGKVVQSYRKKFVIYIE 96 (141)
Q Consensus 44 sapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~-~GkV~~V~rkk~~V~VE 96 (141)
...|+.|- ..|=.+-++++.||.|.|.-|. |.. .++|..++++.-.+.|.
T Consensus 16 ~~~L~~~~-~~Hl~~VLRl~~Gd~v~l~dg~--g~~~~a~I~~i~~~~~~~~i~ 66 (257)
T 3kw2_A 16 SDRLPDDE-AGHILRVLRMQAGDRLRLTDGR--GSFFDAVIETADRKSCYVSVC 66 (257)
T ss_dssp CSBCCHHH-HHHHHTTSCCCTTCEEEEECSB--SEEEEEEEEEECSSCEEEEEE
T ss_pred eEEeCHHH-HHHHHHhccCCCCCEEEEEECC--CCEEEEEEEEeeCCEEEEEEE
Confidence 45576543 4565688899999999999887 432 48888888766555443
No 61
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=42.97 E-value=22 Score=20.89 Aligned_cols=17 Identities=12% Similarity=0.325 Sum_probs=13.4
Q ss_pred ccceecCCeEEEeecCC
Q psy10530 59 SMPVRKDDEVQVVRGHY 75 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~ 75 (141)
-+.+++||.|.|+.-.+
T Consensus 17 eLs~~~Gd~i~v~~~~~ 33 (58)
T 1zuu_A 17 EITITPGDKISLVARDT 33 (58)
T ss_dssp BCCBCTTCCEEEEECCS
T ss_pred cccCCCCCEEEEeEcCC
Confidence 45589999999997554
No 62
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=42.72 E-value=43 Score=24.02 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=19.4
Q ss_pred CcccceecCCeEEEeecCCCCeeeceEEEEE
Q psy10530 57 VRSMPVRKDDEVQVVRGHYKGQQVGKVVQSY 87 (141)
Q Consensus 57 ~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~ 87 (141)
+..-.|+.||.|.+..|..-.-..-+|++|.
T Consensus 87 v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~ 117 (145)
T 1at0_A 87 VFADRIEEKNQVLVRDVETGELRPQRVVKVG 117 (145)
T ss_dssp EEGGGCCTTCEEEEECTTTCCEEEEEEEEEE
T ss_pred EEHHHCcCCCEEEEecCCCCCEEEEEEEEEE
Confidence 3455799999999998742112224555554
No 63
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.61 E-value=16 Score=23.11 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=11.8
Q ss_pred ccceecCCeEEEee
Q psy10530 59 SMPVRKDDEVQVVR 72 (141)
Q Consensus 59 s~~IrkGD~V~Vi~ 72 (141)
-+.+++||.|.|+.
T Consensus 30 eLsf~~Gd~i~v~~ 43 (75)
T 2ege_A 30 RLALRAGDVVMVYG 43 (75)
T ss_dssp BCCBCTTCEEEEES
T ss_pred cceECCCCEEEEeE
Confidence 45689999999996
No 64
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=42.36 E-value=18 Score=28.70 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.0
Q ss_pred ceecCCeEEEeecCCCCeeeceEEEEEcc
Q psy10530 61 PVRKDDEVQVVRGHYKGQQVGKVVQSYRK 89 (141)
Q Consensus 61 ~IrkGD~V~Vi~G~~KGk~~GkV~~V~rk 89 (141)
|++.||.|++ .|.+ |.|.++..-
T Consensus 128 pf~vGD~I~i-----~~~~-G~V~~I~l~ 150 (285)
T 3udc_A 128 QFSVGDYVTI-----NGIS-GTVEEIGLR 150 (285)
T ss_dssp SCCTTCEEEE-----TTEE-EEEEEECSS
T ss_pred CccCCCEEEE-----CCEE-EEEEEeeee
Confidence 7899999998 3677 999988653
No 65
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=40.96 E-value=18 Score=26.43 Aligned_cols=26 Identities=15% Similarity=0.357 Sum_probs=18.9
Q ss_pred CHHHHHhhCCcccc----eecCCeEEEeec
Q psy10530 48 SKELRQKYNVRSMP----VRKDDEVQVVRG 73 (141)
Q Consensus 48 SkeLr~ky~~rs~~----IrkGD~V~Vi~G 73 (141)
..+|-++|||+++| ++-|..|.-+.|
T Consensus 80 ~~~lA~~ygV~sIPTlilFk~G~~v~~~~G 109 (140)
T 2qgv_A 80 SEAIGDRFGAFRFPATLVFTGGNYRGVLNG 109 (140)
T ss_dssp HHHHHHHHTCCSSSEEEEEETTEEEEEEES
T ss_pred CHHHHHHcCCccCCEEEEEECCEEEEEEec
Confidence 56789999999998 455555555555
No 66
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=40.35 E-value=19 Score=26.21 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=20.9
Q ss_pred cCCHHHHHhhCCcccc----eecCCeEEEeecC
Q psy10530 46 PLSKELRQKYNVRSMP----VRKDDEVQVVRGH 74 (141)
Q Consensus 46 pLSkeLr~ky~~rs~~----IrkGD~V~Vi~G~ 74 (141)
--..+|-.+|||+++| ++-|..|.-+.|-
T Consensus 76 De~~~la~~ygV~siPTlilFkdG~~v~~~vG~ 108 (137)
T 2qsi_A 76 EAERGLMARFGVAVCPSLAVVQPERTLGVIAKI 108 (137)
T ss_dssp GGHHHHHHHHTCCSSSEEEEEECCEEEEEEESC
T ss_pred CCCHHHHHHcCCccCCEEEEEECCEEEEEEeCC
Confidence 3356788999999998 5666666666654
No 67
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=40.06 E-value=27 Score=23.69 Aligned_cols=34 Identities=24% Similarity=0.506 Sum_probs=19.9
Q ss_pred eeeeccCCHHHHHhhCCc---------------ccceecCCeEEEeecC
Q psy10530 41 RIMSAPLSKELRQKYNVR---------------SMPVRKDDEVQVVRGH 74 (141)
Q Consensus 41 k~msapLSkeLr~ky~~r---------------s~~IrkGD~V~Vi~G~ 74 (141)
.+|+.-=-++|-++|++. .+-++.||.|+|++-.
T Consensus 13 ~iLs~eEk~~lL~~y~i~~~qLPrI~~~DPvar~~G~k~GdVvkI~R~S 61 (78)
T 1hmj_A 13 EIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRKS 61 (78)
T ss_pred EECCHHHHHHHHHHcCCCHHHCCeeeCcCHhhHHhCCCCCCEEEEEECC
Confidence 455555556677788854 3335566666666544
No 68
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=39.32 E-value=19 Score=22.55 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=12.0
Q ss_pred cceecCCeEEEeec
Q psy10530 60 MPVRKDDEVQVVRG 73 (141)
Q Consensus 60 ~~IrkGD~V~Vi~G 73 (141)
+.+++||.|.|+.-
T Consensus 27 Ls~~~Gd~i~v~~~ 40 (74)
T 1j3t_A 27 LNFSKHDIITVLEQ 40 (74)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCCCCCEEEEEec
Confidence 56899999999875
No 69
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.57 E-value=20 Score=22.60 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=12.7
Q ss_pred ccceecCCeEEEeecC
Q psy10530 59 SMPVRKDDEVQVVRGH 74 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~ 74 (141)
-+.+++||.|.|+.-.
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (78)
T 2yuo_A 23 ELGFRKNDIITIISQK 38 (78)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CccCCCCCEEEEEEec
Confidence 3568999999999743
No 70
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=38.19 E-value=20 Score=21.98 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=14.5
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-...|
T Consensus 24 eLs~~~Gd~i~v~~~~~~g 42 (67)
T 2eyx_A 24 ALALEVGELVKVTKINVSG 42 (67)
T ss_dssp BCCBCSSEEEEEEEECTTS
T ss_pred ccccCCCCEEEEEEecCCC
Confidence 5668999999998755444
No 71
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=38.16 E-value=21 Score=21.27 Aligned_cols=17 Identities=6% Similarity=0.143 Sum_probs=13.1
Q ss_pred ccceecCCeEEEeecCC
Q psy10530 59 SMPVRKDDEVQVVRGHY 75 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~ 75 (141)
.+.+++||.|.|+.-.+
T Consensus 22 eLs~~~Gd~i~v~~~~~ 38 (60)
T 2gnc_A 22 ELSFKKGASLLLYHRAS 38 (60)
T ss_dssp BCCBCTTCEEEEEEEEE
T ss_pred CcCCCCCCEEEEEEecC
Confidence 35689999999987543
No 72
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=37.86 E-value=27 Score=23.14 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=14.8
Q ss_pred eccCCHHHHHhhCCcccc
Q psy10530 44 SAPLSKELRQKYNVRSMP 61 (141)
Q Consensus 44 sapLSkeLr~ky~~rs~~ 61 (141)
..-=..+|.++||++++|
T Consensus 58 d~d~~~~l~~~~~V~~~P 75 (105)
T 3zzx_A 58 DVDECEDIAQDNQIACMP 75 (105)
T ss_dssp ETTTCHHHHHHTTCCBSS
T ss_pred ecccCHHHHHHcCCCeec
Confidence 344467899999999999
No 73
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=37.83 E-value=51 Score=23.31 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=31.7
Q ss_pred eeeeccCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEccC
Q psy10530 41 RIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKK 90 (141)
Q Consensus 41 k~msapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk 90 (141)
...-+.++--+|. .+.|..||.|.|-.-+|-... |.|+.+++..
T Consensus 55 ~~~l~~i~GK~Rk-----~I~i~~GD~V~ve~~~~~~~k-G~I~~~~~r~ 98 (117)
T 2oqk_A 55 QKRLCHIRGKMRK-----KVWVNPGDIVLVSLRDFQDSK-GDIILKYTPD 98 (117)
T ss_dssp CEEEEECCHHHHH-----HSCCCTTCEEEEEECTTCTTE-EEEEEECCHH
T ss_pred CEEEEEEcCceec-----CCcCCCCCEEEEEEEcCCCCe-EEEEEEechH
Confidence 3456778877776 355679999999766555556 8898887643
No 74
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=37.80 E-value=39 Score=25.19 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=32.8
Q ss_pred eeccCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEccCC
Q psy10530 43 MSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKF 91 (141)
Q Consensus 43 msapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~ 91 (141)
.-|++|--+|+ .+.|+.||.|.|---.|--.. |.|+.++....
T Consensus 56 ~La~I~GKmRk-----~IwI~~GD~VlVe~~~yd~~K-G~Ii~r~~~de 98 (143)
T 1d7q_A 56 RLCHIRGKLRK-----KVWINTSDIILVGLRDYQDNK-ADVILKYNADE 98 (143)
T ss_dssp EEEECCSGGGG-----SCCCCTTCEEEEECSSSSSSC-CEEEEEECTTT
T ss_pred EEEEeccccee-----eEEecCCCEEEEeeccCCCCe-EEEEEEeCHHH
Confidence 34667766664 678999999999877777666 99998886554
No 75
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=37.19 E-value=60 Score=25.61 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=34.6
Q ss_pred cCCHHHHHhhCCcccceecCCeEEEeecCCCCee-eceEEEEEccCCEEEEe
Q psy10530 46 PLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQ-VGKVVQSYRKKFVIYIE 96 (141)
Q Consensus 46 pLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~-~GkV~~V~rkk~~V~VE 96 (141)
.|+.|- ..|=.+-++++.||.|.|.-|. |.. .++|..+.++.-.+.|.
T Consensus 21 ~L~~~~-~~Hl~~VLRl~~Gd~v~l~dg~--g~~~~a~I~~~~~~~~~~~i~ 69 (257)
T 1vhy_A 21 YLSEDA-ANHVARVLRMTEGEQLELFDGS--NHIYPAKIIESNKKSVKVEIL 69 (257)
T ss_dssp ECCHHH-HHHHHTTSCCCTTCEEEEECSS--SEEEEEEEEEECSSCEEEEEC
T ss_pred EeCHHH-HHHHHHHhccCCCCEEEEEcCC--CCEEEEEEEEeeCCeEEEEEE
Confidence 466653 4566688899999999998885 433 47898888776555554
No 76
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=36.88 E-value=29 Score=21.22 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=14.3
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-...|
T Consensus 19 eLs~~~Gd~i~v~~~~~~~ 37 (69)
T 1ruw_A 19 ELPLKKGDIVFISRDEPSG 37 (69)
T ss_dssp BCCBCTTCEEEEEEECTTS
T ss_pred cccCCCCCEEEEEEecCCC
Confidence 4568999999999765433
No 77
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=36.78 E-value=22 Score=22.12 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=14.4
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-.+.|
T Consensus 29 eLs~~~Gd~i~v~~~~~~~ 47 (73)
T 3c0c_A 29 ELGFREGDLITLTNQIDEN 47 (73)
T ss_dssp BCCBCTTCEEEEEEECSSS
T ss_pred CccCcCCCEEEEEEecCCC
Confidence 3568999999999865444
No 78
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=36.60 E-value=42 Score=26.60 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=18.8
Q ss_pred ceecCCeEEEeecCCCCeeeceEEEEEcc
Q psy10530 61 PVRKDDEVQVVRGHYKGQQVGKVVQSYRK 89 (141)
Q Consensus 61 ~IrkGD~V~Vi~G~~KGk~~GkV~~V~rk 89 (141)
|++.||.|+| .|.+ |.|.++..-
T Consensus 129 pf~vGD~I~i-----~g~~-G~V~~I~l~ 151 (286)
T 2vv5_A 129 PFRAGEYVDL-----GGVA-GTVLSVQIF 151 (286)
T ss_dssp SSCTTCEEES-----SSCE-EEEEEECSS
T ss_pred CccCCCEEEE-----CCEE-EEEEEEEeE
Confidence 7899999987 2677 999998763
No 79
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=36.10 E-value=37 Score=19.61 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=13.0
Q ss_pred ccceecCCeEEEeecC
Q psy10530 59 SMPVRKDDEVQVVRGH 74 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~ 74 (141)
-+.+++||.|.|+.-.
T Consensus 16 eLs~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 16 EISIDPGDIITVIRGD 31 (54)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CccCCCCCEEEEEEec
Confidence 3568999999999855
No 80
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=35.98 E-value=23 Score=22.12 Aligned_cols=16 Identities=13% Similarity=0.420 Sum_probs=12.8
Q ss_pred ccceecCCeEEEeecC
Q psy10530 59 SMPVRKDDEVQVVRGH 74 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~ 74 (141)
-+.+++||.|.|+.-.
T Consensus 18 eLs~~~Gd~i~vl~~~ 33 (69)
T 2ydl_A 18 ELTIKEGDIVTLINKD 33 (69)
T ss_dssp BCCBCTTCEEEEEESC
T ss_pred ccccCCCCEEEEEEcC
Confidence 3568999999999753
No 81
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=35.75 E-value=25 Score=22.24 Aligned_cols=17 Identities=6% Similarity=0.231 Sum_probs=13.2
Q ss_pred ccceecCCeEEEeecCC
Q psy10530 59 SMPVRKDDEVQVVRGHY 75 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~ 75 (141)
-+.+++||.|.|+.=.+
T Consensus 29 eLs~~~Gd~i~vl~~~~ 45 (79)
T 1uhc_A 29 ELSVSANQKLKILEFKD 45 (79)
T ss_dssp BCCBCTTCEEEEEESCC
T ss_pred ccCCCCCCEEEEEECCC
Confidence 35689999999997443
No 82
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=35.68 E-value=69 Score=25.43 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=32.4
Q ss_pred CCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEccCCEEEE
Q psy10530 47 LSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYI 95 (141)
Q Consensus 47 LSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~V 95 (141)
|+.| ...|=.+-++++.||.|.|.-|.-.-- .++|..+.++.-.+.|
T Consensus 23 L~~~-~~~Hl~~VLRl~~Gd~i~l~dg~G~~~-~a~I~~~~~~~~~~~i 69 (268)
T 1vhk_A 23 ITGE-EVHHIVNVMRMNEGDQIICCSQDGFEA-KCELQSVSKDKVSCLV 69 (268)
T ss_dssp EESH-HHHHHHTTTCCCTTCEEEEECTTSCEE-EEEEEEECSSEEEEEE
T ss_pred eCHH-HHHHHHHhhcCCCCCEEEEEeCCCCEE-EEEEEEecCCEEEEEE
Confidence 4443 345656788999999999998864333 3788888776544444
No 83
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.60 E-value=25 Score=21.52 Aligned_cols=17 Identities=6% Similarity=0.030 Sum_probs=13.2
Q ss_pred ccceecCCeEEEeecCC
Q psy10530 59 SMPVRKDDEVQVVRGHY 75 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~ 75 (141)
-+.+++||.|.|+.-.+
T Consensus 23 eLs~~~Gd~i~v~~~~~ 39 (68)
T 1x2k_A 23 ELYFEEGDIIYITDMSD 39 (68)
T ss_dssp BCCCCSSCEEEEEECSC
T ss_pred cccCCCCCEEEEEEcCC
Confidence 45689999999997543
No 84
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=35.40 E-value=84 Score=21.73 Aligned_cols=54 Identities=7% Similarity=0.128 Sum_probs=41.5
Q ss_pred cCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEeccCCcEEEecccccceE
Q psy10530 64 KDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCV 118 (141)
Q Consensus 64 kGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K~~G~~v~~pIhpSNV~ 118 (141)
.|-.+.+|+=.+---+ |.+-.|+..+.+|...+|-.--..|-....+|.||+-.
T Consensus 12 IGs~iSLISk~dIRYe-GiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~v 65 (88)
T 2vxe_A 12 LGSKISLISKADIRYE-GRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQI 65 (88)
T ss_dssp TTCEEEEEETTTEEEE-EEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSC
T ss_pred cCCeEEEEECCCceEE-EEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCce
Confidence 5777888888877788 99999999999999998866544443334678888743
No 85
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=35.40 E-value=29 Score=20.47 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=12.2
Q ss_pred ccceecCCeEEEeec
Q psy10530 59 SMPVRKDDEVQVVRG 73 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G 73 (141)
.+.+++||.|.|+.-
T Consensus 19 eLs~~~Gd~i~v~~~ 33 (60)
T 2x3w_D 19 ELSFKAGDELTKLGE 33 (60)
T ss_dssp BCCBCTTCEEEECSC
T ss_pred cccCCCCCEEEEEEc
Confidence 456899999999874
No 86
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.28 E-value=24 Score=21.87 Aligned_cols=16 Identities=6% Similarity=0.210 Sum_probs=12.6
Q ss_pred ccceecCCeEEEeecC
Q psy10530 59 SMPVRKDDEVQVVRGH 74 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~ 74 (141)
-+.+++||.|.|+.-.
T Consensus 25 eLs~~~Gd~i~v~~~~ 40 (72)
T 2dl8_A 25 ELSFKKGASLLLYQRA 40 (72)
T ss_dssp BCCBCTTCEEEEEEEE
T ss_pred EeccCCCCEEEEEeec
Confidence 3568999999998743
No 87
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=35.13 E-value=36 Score=21.33 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=13.4
Q ss_pred ccceecCCeEEEeecC
Q psy10530 59 SMPVRKDDEVQVVRGH 74 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~ 74 (141)
-+.+++||.|.|+.-.
T Consensus 34 eLsf~~Gd~i~v~~~~ 49 (78)
T 1k1z_A 34 FLRLNPGDIVELTKAE 49 (78)
T ss_dssp CCCBCTTCEEEEEECC
T ss_pred ccCCCCCCEEEEEEcC
Confidence 4668999999999874
No 88
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=34.88 E-value=1.4e+02 Score=22.34 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=43.2
Q ss_pred CHHHHHhhCCcccc-eecCCeEEEeecCCCCe------eeceEEEEEccC--CEEEEeeeeEeccCCcEEEecccccceE
Q psy10530 48 SKELRQKYNVRSMP-VRKDDEVQVVRGHYKGQ------QVGKVVQSYRKK--FVIYIEKIQRDKVNGATVYVGIHPSKCV 118 (141)
Q Consensus 48 SkeLr~ky~~rs~~-IrkGD~V~Vi~G~~KGk------~~GkV~~V~rkk--~~V~VEgvn~~K~~G~~v~~pIhpSNV~ 118 (141)
-+++-+++-...+| ++.||+|.|--=---|. -.|.|+.+.... ..+.|..+ ...-|.+.-+|+|..+|.
T Consensus 7 i~~ie~~~~~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRki--s~gvGVEr~Fpl~SP~I~ 84 (146)
T 3v2d_T 7 IKLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKV--SYGVGVERIFPLHSPLIQ 84 (146)
T ss_dssp HHHHHHTTCCCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEE--ETTEEEEEEEETTCTTEE
T ss_pred HHHHHHHHhhccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEe--cCCccEEEEEecCCCccc
Confidence 34555555555554 89999998754221121 138888876543 25555544 112245667899999887
Q ss_pred EEeC
Q psy10530 119 IVKL 122 (141)
Q Consensus 119 i~~l 122 (141)
=++.
T Consensus 85 ~IeV 88 (146)
T 3v2d_T 85 KIDI 88 (146)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5443
No 89
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1
Probab=34.59 E-value=27 Score=21.45 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=11.9
Q ss_pred ccceecCCeEEEee
Q psy10530 59 SMPVRKDDEVQVVR 72 (141)
Q Consensus 59 s~~IrkGD~V~Vi~ 72 (141)
-+.+++||.|.|+.
T Consensus 27 eLs~~~Gd~i~v~~ 40 (71)
T 1csk_A 27 DLPFCKGDVLTIVA 40 (71)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred cCCCCCCCEEEEeE
Confidence 35589999999998
No 90
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=34.58 E-value=26 Score=20.74 Aligned_cols=14 Identities=14% Similarity=0.532 Sum_probs=11.9
Q ss_pred ccceecCCeEEEee
Q psy10530 59 SMPVRKDDEVQVVR 72 (141)
Q Consensus 59 s~~IrkGD~V~Vi~ 72 (141)
-+.+++||.|.|+.
T Consensus 21 eLs~~~Gd~i~v~~ 34 (63)
T 3eg3_A 21 TLSITKGEKLRVLG 34 (63)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred ccCCCCCCEEEEEE
Confidence 35689999999997
No 91
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.97 E-value=25 Score=22.12 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=13.1
Q ss_pred ccceecCCeEEEeecCC
Q psy10530 59 SMPVRKDDEVQVVRGHY 75 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~ 75 (141)
-+.+++||.|.|+.-.+
T Consensus 26 eLs~~~Gd~i~v~~~~~ 42 (76)
T 2epd_A 26 ELSFRRGDVLRLHERAS 42 (76)
T ss_dssp BCEECTTCEEEEEEEEE
T ss_pred ccCCCCCCEEEEEEeCC
Confidence 35689999999987543
No 92
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=33.48 E-value=31 Score=20.61 Aligned_cols=16 Identities=6% Similarity=0.362 Sum_probs=13.0
Q ss_pred ccceecCCeEEEeecC
Q psy10530 59 SMPVRKDDEVQVVRGH 74 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~ 74 (141)
-+.+++||.|.|+.-.
T Consensus 22 eLs~~~Gd~i~v~~~~ 37 (62)
T 2iim_A 22 DLGFEKGEQLRILEQS 37 (62)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CcCCCCCCEEEEEEcC
Confidence 4558999999999864
No 93
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=32.93 E-value=26 Score=21.01 Aligned_cols=16 Identities=19% Similarity=0.576 Sum_probs=12.9
Q ss_pred ccceecCCeEEEeecC
Q psy10530 59 SMPVRKDDEVQVVRGH 74 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~ 74 (141)
-+.+++||.|.|+.-.
T Consensus 23 eLs~~~Gd~i~v~~~~ 38 (65)
T 1w1f_A 23 DLSFKKGEKMKVLEEH 38 (65)
T ss_dssp CCCBCTTCEEEEEEEC
T ss_pred cCCCCCCCEEEEEEcC
Confidence 3568999999998865
No 94
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=31.82 E-value=43 Score=22.73 Aligned_cols=35 Identities=14% Similarity=0.371 Sum_probs=21.6
Q ss_pred eeeeeccCCHHHHHhhCCc---------------ccceecCCeEEEeecC
Q psy10530 40 RRIMSAPLSKELRQKYNVR---------------SMPVRKDDEVQVVRGH 74 (141)
Q Consensus 40 ~k~msapLSkeLr~ky~~r---------------s~~IrkGD~V~Vi~G~ 74 (141)
+..|+.-=.++|-++|++. .+-++.||.|+|+|=.
T Consensus 20 H~vLs~eE~~~ll~~y~i~~~qLP~I~~~DPva~~~g~k~GdVvkI~R~S 69 (84)
T 4ayb_H 20 HEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKS 69 (84)
T ss_dssp EEECCHHHHHHHHHHHTCCGGGSCCEESSSHHHHHHTCCTTCEEEEEEEE
T ss_pred eEECCHHHHHHHHHHhcCCHhHCCeecccCHhHHhhCCCCCCEEEEEEcC
Confidence 3455555556778889864 2226677777777644
No 95
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=31.32 E-value=47 Score=20.19 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=12.9
Q ss_pred ccceecCCeEEEeec
Q psy10530 59 SMPVRKDDEVQVVRG 73 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G 73 (141)
-+.+++||.|.|+.-
T Consensus 26 eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 26 FLRLNPGDIVELTKA 40 (70)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred cCCcCCCCEEEEEeC
Confidence 456899999999987
No 96
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.32 E-value=27 Score=21.36 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=12.5
Q ss_pred cceecCCeEEEeecCC
Q psy10530 60 MPVRKDDEVQVVRGHY 75 (141)
Q Consensus 60 ~~IrkGD~V~Vi~G~~ 75 (141)
+.+++||.|.|+.-.+
T Consensus 24 Ls~~~Gd~i~v~~~~~ 39 (68)
T 2dmo_A 24 LQVMPGNIVFVLKKGN 39 (68)
T ss_dssp CCCCTTCEEEECEECS
T ss_pred CCCCCCCEEEEEEeCC
Confidence 5689999999986443
No 97
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.83 E-value=42 Score=20.89 Aligned_cols=16 Identities=13% Similarity=0.293 Sum_probs=13.0
Q ss_pred ccceecCCeEEEeecC
Q psy10530 59 SMPVRKDDEVQVVRGH 74 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~ 74 (141)
-+.+++||.|.|+.-.
T Consensus 26 eLs~~~Gd~i~v~~~~ 41 (77)
T 2enm_A 26 ELTVTEGEIITVTNPN 41 (77)
T ss_dssp BCCCCTTCEEEEEESC
T ss_pred eecCCCCCEEEEeEcc
Confidence 4568999999999854
No 98
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=30.79 E-value=33 Score=21.09 Aligned_cols=15 Identities=13% Similarity=0.361 Sum_probs=12.0
Q ss_pred ccceecCCeEEEeec
Q psy10530 59 SMPVRKDDEVQVVRG 73 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G 73 (141)
-+.+++||.|.|+.-
T Consensus 24 eLs~~~Gd~i~v~~~ 38 (69)
T 1uhf_A 24 DLTFTEGEEILVTQK 38 (69)
T ss_dssp BCCBCTTCEEEECEE
T ss_pred ccCCCCCCEEEEEEe
Confidence 356899999999864
No 99
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.50 E-value=33 Score=21.76 Aligned_cols=19 Identities=16% Similarity=0.358 Sum_probs=14.2
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-.+-|
T Consensus 26 eLs~~~Gd~i~v~~~~~~~ 44 (81)
T 2ysq_A 26 ELAFKAGDVIKVLDASNKD 44 (81)
T ss_dssp SCCCCTTCEEEEEECCSSS
T ss_pred cCCCCCCCEEEEEEEcCcC
Confidence 3568999999999754433
No 100
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=29.80 E-value=81 Score=24.40 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=24.0
Q ss_pred ceecCCeEEEeecCC------------CCeeeceEEEEEccCCEEEEeee
Q psy10530 61 PVRKDDEVQVVRGHY------------KGQQVGKVVQSYRKKFVIYIEKI 98 (141)
Q Consensus 61 ~IrkGD~V~Vi~G~~------------KGk~~GkV~~V~rkk~~V~VEgv 98 (141)
-|++||.|.|+.... -|.. |..++|....++ +|.|+
T Consensus 140 lV~rG~~V~i~~~~~g~~i~~~G~AL~~G~~-Gd~IrVr~~Sgk-iv~g~ 187 (219)
T 3tee_A 140 RVKAGQRVQVIANGEGFSVNAEGQAMNNAAV-AQNARVRMTSGQ-IVSGT 187 (219)
T ss_dssp SBCTTCEEEEEEECSSCEEEEEEEECSCBCT-TSEEEEEETTSC-EEEEE
T ss_pred EEcCCCEEEEEEecCCEEEEEEEEEccccCC-CCEEEEECCCCC-EEEEE
Confidence 499999999987553 2666 777777655444 34444
No 101
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=29.43 E-value=37 Score=21.34 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=13.0
Q ss_pred ccceecCCeEEEeecCC
Q psy10530 59 SMPVRKDDEVQVVRGHY 75 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~ 75 (141)
-+.+++||.|.|+.-..
T Consensus 21 eLs~~~Gd~i~v~~~~~ 37 (73)
T 2lcs_A 21 ELRLAEGDIVFISYKHG 37 (73)
T ss_dssp BCCBCTTCEEEEEEEET
T ss_pred ccCCcCCCEEEEEEEcC
Confidence 35689999999987543
No 102
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.51 E-value=52 Score=20.65 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=13.7
Q ss_pred ccceecCCeEEEeecCC
Q psy10530 59 SMPVRKDDEVQVVRGHY 75 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~ 75 (141)
-+.+++||.|.|+.-.+
T Consensus 33 eLsf~~Gd~i~v~~~~~ 49 (80)
T 2d8h_A 33 DLNFQAGDRITVISKTD 49 (80)
T ss_dssp BCEECTTCEEEEEECCS
T ss_pred eeeEcCCCEEEEeECcC
Confidence 46799999999998553
No 103
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.41 E-value=33 Score=21.98 Aligned_cols=15 Identities=7% Similarity=0.235 Sum_probs=12.2
Q ss_pred ccceecCCeEEEeec
Q psy10530 59 SMPVRKDDEVQVVRG 73 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G 73 (141)
-+.+++||.|.|+.-
T Consensus 24 eLsf~~Gd~i~v~~~ 38 (85)
T 2dlp_A 24 LLSFHRGDLIKLLPV 38 (85)
T ss_dssp BCCBCTTCEEEECCC
T ss_pred CccCcCCCEEEEEEc
Confidence 356899999999973
No 104
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=28.16 E-value=21 Score=27.20 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=19.6
Q ss_pred CCcccceecCCeEEEeecCCCCeeeceEEEEE
Q psy10530 56 NVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSY 87 (141)
Q Consensus 56 ~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~ 87 (141)
.+|++-+|.||.|+|- |--|-. =.|+..-
T Consensus 58 ~vk~LeLRiGD~VKVd-~vpK~~--hiVvGf~ 86 (153)
T 2fhd_A 58 QIKRFFLKKGDVVQST-RLGKIK--HTVVKTF 86 (153)
T ss_dssp SEEESCCCTTCEEEET-TSTTCC--EEEEEEE
T ss_pred hceeeeeecCCEEEEC-CCCCcc--EEEEEec
Confidence 4788999999999998 333322 2455554
No 105
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=28.10 E-value=1.1e+02 Score=25.49 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=29.6
Q ss_pred cccceecCCeEEEe--ecCCCCee-eceEEEEEccCCEEEEeee
Q psy10530 58 RSMPVRKDDEVQVV--RGHYKGQQ-VGKVVQSYRKKFVIYIEKI 98 (141)
Q Consensus 58 rs~~IrkGD~V~Vi--~G~~KGk~-~GkV~~V~rkk~~V~VEgv 98 (141)
.++.|++||.|-.. ++..-+.. .++|++++...++..|+++
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~~~y~v~d~ 427 (522)
T 3mp6_A 384 PNAPILVGSEVAYKPRRGSADGEWIQCEVLKVVADGTRFEVRDP 427 (522)
T ss_dssp CCCCBCTTCEEEECCC-----CCEEEEEEEEEETTTTEEEEEEC
T ss_pred cccccCCCCEEEEecCCCCCCCCEEEEEEEEEeCCCCEEEEeCC
Confidence 47889999998875 23222332 5899999999988999877
No 106
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=27.88 E-value=40 Score=19.76 Aligned_cols=19 Identities=11% Similarity=0.267 Sum_probs=14.6
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-.+.|
T Consensus 17 eLs~~~Gd~i~v~~~~~~~ 35 (58)
T 2bz8_A 17 ELTISVGEIITNIRKEDGG 35 (58)
T ss_dssp BCCBCTTCEEEEEECCTTT
T ss_pred EeeECCCCEEEEEEeCCCC
Confidence 3568999999999865444
No 107
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=27.07 E-value=50 Score=20.18 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=11.6
Q ss_pred ccceecCCeEEEee
Q psy10530 59 SMPVRKDDEVQVVR 72 (141)
Q Consensus 59 s~~IrkGD~V~Vi~ 72 (141)
-+.+++||.|.|+.
T Consensus 23 eLsf~~Gd~i~v~~ 36 (70)
T 2vkn_A 23 EISFEQNEILQVSD 36 (70)
T ss_dssp BCCBCTTCEEEEEC
T ss_pred cccCCCCCEEEEEE
Confidence 45689999999986
No 108
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=26.79 E-value=63 Score=20.11 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=15.2
Q ss_pred ccceecCCeEEEeecCCCCe
Q psy10530 59 SMPVRKDDEVQVVRGHYKGQ 78 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KGk 78 (141)
-+.+++||.|.|+.-.+.|=
T Consensus 22 ELs~~~Gd~i~v~~~~~~gW 41 (65)
T 2lj0_A 22 ELELRDGDIVDVMEKCDDGW 41 (65)
T ss_dssp BCCBCTTCEEEEEEECTTSE
T ss_pred CcCCCCCCEEEEeEeCCCCE
Confidence 35699999999997655553
No 109
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=26.61 E-value=52 Score=21.02 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=25.3
Q ss_pred eeeeccCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceE
Q psy10530 41 RIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKV 83 (141)
Q Consensus 41 k~msapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV 83 (141)
...-+.++--+|+ ..+.|..||.|.|--=+|.... |.|
T Consensus 30 ~~~~~~i~Gk~Rk----~~i~i~~GD~V~ve~~~~~~~k-g~I 67 (71)
T 1hr0_W 30 PEILAYISGKMRM----HYIRILPGDRVVVEITPYDPTR-GRI 67 (71)
T ss_dssp CBCCCEECHHHHH----TCCCCCTTCEEEEECCTTCTTC-CEE
T ss_pred CEEEEEEcceEec----cCcCCCCCCEEEEEEEcCCCCE-EEE
Confidence 3446888888887 4667889999998654333333 544
No 110
>1gxi_E Photosystem I reaction center subunit IV; photosynthesis, PSAE SUB-UNIT, thylakoid; NMR {Synechocystis SP} SCOP: b.34.4.2 PDB: 1pse_A 1psf_A
Probab=26.52 E-value=20 Score=24.21 Aligned_cols=33 Identities=18% Similarity=0.469 Sum_probs=25.2
Q ss_pred eecCCeEEEeecC--CCCeeeceEEEEEccC--CEEEE
Q psy10530 62 VRKDDEVQVVRGH--YKGQQVGKVVQSYRKK--FVIYI 95 (141)
Q Consensus 62 IrkGD~V~Vi~G~--~KGk~~GkV~~V~rkk--~~V~V 95 (141)
|++||.|.|+|=. +=... |+|..||... +-|+|
T Consensus 2 i~RGskVrIlR~ESYWyn~v-GtVasVD~sgi~YPVvV 38 (73)
T 1gxi_E 2 LNRGDKVRIKRTESYWYGDV-GTVASVEKSGILYPVIV 38 (73)
T ss_dssp CCTTCCEEECCSSSTTTTEE-ECBCCTTTCCSSSCEEE
T ss_pred ccCCCEEEEccccceeecCc-ceEEEEcCCCCEeeEEE
Confidence 7899999999976 34555 9999999853 44555
No 111
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=26.22 E-value=54 Score=20.68 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=13.2
Q ss_pred ccceecCCeEEEeecCC
Q psy10530 59 SMPVRKDDEVQVVRGHY 75 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~ 75 (141)
-+.+++||.|.|+.=.+
T Consensus 24 ELsf~~Gd~i~Vl~~~~ 40 (69)
T 1nm7_A 24 EVALKKGDLMAILSKKD 40 (69)
T ss_dssp CCCCCTTCEEEECCSSS
T ss_pred ccCCCCCCEEEEEecCC
Confidence 45689999999997543
No 112
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.85 E-value=55 Score=23.19 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=29.9
Q ss_pred eccCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEccC
Q psy10530 44 SAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKK 90 (141)
Q Consensus 44 sapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk 90 (141)
-|++|--+|+ .+.|+.||.|.|---.|-....|.|+.+++..
T Consensus 41 la~i~GK~Rk-----~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~ 82 (111)
T 2dgy_A 41 LVSMPSKYRK-----NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKD 82 (111)
T ss_dssp EEECCTTCCS-----CCCCCSSCEEEEEECSSCSSCCEEEEEECCHH
T ss_pred EEEechhhcc-----cEEEcCCCEEEEEecccCCcceEEEEEEeCHH
Confidence 3777766662 68899999999987776523338888877653
No 113
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A
Probab=25.72 E-value=39 Score=21.47 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=12.9
Q ss_pred ccceecCCeEEEeecC
Q psy10530 59 SMPVRKDDEVQVVRGH 74 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~ 74 (141)
.+.+++||.|.|+.-.
T Consensus 41 eLs~~~Gd~i~v~~~~ 56 (86)
T 2oi3_A 41 DLSFQKGDQMVVLEES 56 (86)
T ss_dssp CCCCCTTCEEEEEEES
T ss_pred cCcCCCCCEEEEEEcC
Confidence 3568999999998755
No 114
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=25.71 E-value=1.1e+02 Score=19.92 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=30.9
Q ss_pred CCHHHHHhhCCc---ccceecCCeEEEeecCCCCee-eceEEEEEccCCEEEE
Q psy10530 47 LSKELRQKYNVR---SMPVRKDDEVQVVRGHYKGQQ-VGKVVQSYRKKFVIYI 95 (141)
Q Consensus 47 LSkeLr~ky~~r---s~~IrkGD~V~Vi~G~~KGk~-~GkV~~V~rkk~~V~V 95 (141)
|..||++-|+-. ...++.||.+.+.--. -|.. +++|+++.. .+.+.|
T Consensus 10 Lm~~m~~~y~~~~~~~~~~~~G~~c~a~~~~-d~~wyRA~I~~~~~-~~~~~V 60 (94)
T 3fdr_A 10 LVNEMTQHYENSVPEDLTVHVGDIVAAPLPT-NGSWYRARVLGTLE-NGNLDL 60 (94)
T ss_dssp HHHHHHHHHTTCCCCCCCCCTTCEEEEEETT-TTEEEEEEEEEECT-TSCEEE
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCEEEEEECC-CCeEEEEEEEEECC-CCeEEE
Confidence 557788888754 3468999999776322 2444 589999864 344444
No 115
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=25.64 E-value=4.8 Score=30.15 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=30.3
Q ss_pred eecCCeEEEeecCCCCeeeceEEEEEccC------CEEEEeeeeE
Q psy10530 62 VRKDDEVQVVRGHYKGQQVGKVVQSYRKK------FVIYIEKIQR 100 (141)
Q Consensus 62 IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk------~~V~VEgvn~ 100 (141)
++.|-.|.|++|.|.|+. ..|++...+. +.+.|-||..
T Consensus 5 ~kpGkVvivl~GryaGkK-aVivk~~d~gt~d~py~halVaGIdr 48 (136)
T 3izc_a 5 LKAGKVAVVVRGRYAGKK-VVIVKPHDEGSKSHPFGHALVAGIER 48 (136)
T ss_dssp CCCCCCCBCCCSSSSCCB-CBCCCCSSSCSCCSSSCCSCCBCCSS
T ss_pred ccCCEEEEEeccccCCcE-EEEEEecCCCCCCCccceEEEEeccc
Confidence 678999999999999999 8888775543 2678888765
No 116
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=25.62 E-value=47 Score=19.32 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=13.4
Q ss_pred ccceecCCeEEEeecCC
Q psy10530 59 SMPVRKDDEVQVVRGHY 75 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~ 75 (141)
.+.+++||.|.|+.-.+
T Consensus 17 eLs~~~Gd~i~v~~~~~ 33 (57)
T 1cka_A 17 DLPFKKGDILRIRDKPE 33 (57)
T ss_dssp BCCBCTTCEEEEEECSS
T ss_pred CCCCCCCCEEEEEEecC
Confidence 35689999999998544
No 117
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Probab=25.41 E-value=48 Score=20.19 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=12.4
Q ss_pred ccceecCCeEEEeec
Q psy10530 59 SMPVRKDDEVQVVRG 73 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G 73 (141)
-+.+++||.|.|+.-
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (71)
T 1u5s_A 22 ELNFEKGETMEVIEK 36 (71)
T ss_dssp BCCCCSSCCEEEEEC
T ss_pred cccCCCCCEEEEEEC
Confidence 355899999999985
No 118
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=25.20 E-value=48 Score=19.28 Aligned_cols=19 Identities=5% Similarity=0.288 Sum_probs=14.3
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-..-|
T Consensus 18 eLs~~~Gd~i~v~~~~~~~ 36 (58)
T 1sem_A 18 ELAFKRGDVITLINKDDPN 36 (58)
T ss_dssp BCCBCTTCEEEEEECSSSS
T ss_pred CcCCCCCCEEEEEEecCCC
Confidence 4568999999999865433
No 119
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=25.06 E-value=68 Score=22.52 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=39.1
Q ss_pred cCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEeccCCcEEEecccccce
Q psy10530 64 KDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKC 117 (141)
Q Consensus 64 kGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K~~G~~v~~pIhpSNV 117 (141)
.|-.+.+|+=.+---+ |.+-.|+....+|.+.+|-.--..|-....||.||+-
T Consensus 18 IGs~ISLISk~dIRYe-GiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~ 70 (95)
T 2fb7_A 18 IGSKISLISKAEIRYE-GILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDE 70 (95)
T ss_dssp SSEEEEEEETTTEEEE-EEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCC
T ss_pred cCCeEEEEECCCceEE-EEEecccCccCEEEEEeeeEecccCCCCCCccCCCCc
Confidence 4667778887777778 9999999999999998875443334333456888764
No 120
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=25.02 E-value=48 Score=25.03 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=34.0
Q ss_pred eccCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEcc------CCEEEEeeeeEecc
Q psy10530 44 SAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRK------KFVIYIEKIQRDKV 103 (141)
Q Consensus 44 sapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rk------k~~V~VEgvn~~K~ 103 (141)
.+.|+.+.-+++| |..||.|.|. |+ . ..+..+++. .+.|.++++.+.+.
T Consensus 23 ivrl~p~~m~~Lg-----l~~GD~V~I~-G~----r-~t~a~v~~~~~ed~~~g~Irid~~~R~N~ 77 (185)
T 1cz4_A 23 RVRLDESSRRLLD-----AEIGDVVEIE-KV----R-KTVGRVYRARPEDENKGIVRIDSVMRNNC 77 (185)
T ss_dssp EEEECHHHHHTTC-----CCTTCEEEEE-SS----S-EEEEEEEECSSTTTTTSEEECCHHHHHHH
T ss_pred EEEECHHHHHHcC-----CCCCCEEEEE-cC----C-eEEEEEEEcCcCcCCCCEEEeCHHHHhcc
Confidence 3668999999888 8899999884 43 2 344444433 46888887766553
No 121
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=24.95 E-value=58 Score=20.38 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=14.7
Q ss_pred eeccCCHHHHHhhCCcccc
Q psy10530 43 MSAPLSKELRQKYNVRSMP 61 (141)
Q Consensus 43 msapLSkeLr~ky~~rs~~ 61 (141)
+...-..+|.++|+++++|
T Consensus 58 vd~~~~~~~~~~~~v~~~P 76 (107)
T 1gh2_A 58 VDVHQCQGTAATNNISATP 76 (107)
T ss_dssp EETTTSHHHHHHTTCCSSS
T ss_pred EECccCHHHHHhcCCCccc
Confidence 3344457899999999998
No 122
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=24.84 E-value=49 Score=19.38 Aligned_cols=19 Identities=5% Similarity=0.065 Sum_probs=14.2
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-.+-|
T Consensus 16 eLs~~~Gd~i~v~~~~~~~ 34 (58)
T 1jo8_A 16 ELTFVENDKIINIEFVDDD 34 (58)
T ss_dssp BCCBCTTCEEEEEECCSSS
T ss_pred CcccCCCCEEEEEEecCCC
Confidence 3568999999999854433
No 123
>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=24.83 E-value=50 Score=20.62 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=13.5
Q ss_pred ccceecCCeEEEeecCC
Q psy10530 59 SMPVRKDDEVQVVRGHY 75 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~ 75 (141)
-+.+++||.|.|+.-.+
T Consensus 31 eLs~~~Gd~i~v~~~~~ 47 (80)
T 2v1r_A 31 EVALKKGDLMAILSKKD 47 (80)
T ss_dssp BCCBCTTCEEEEEEEEC
T ss_pred EecCCCCCEEEEEECCC
Confidence 45689999999998553
No 124
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=24.76 E-value=47 Score=25.76 Aligned_cols=45 Identities=27% Similarity=0.228 Sum_probs=30.5
Q ss_pred cCCHHHHHhhCCcccceecCCeEEEeecCCCCee-eceEEEEEccCCEEEE
Q psy10530 46 PLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQ-VGKVVQSYRKKFVIYI 95 (141)
Q Consensus 46 pLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~-~GkV~~V~rkk~~V~V 95 (141)
.|+.|-- .|= +-++++.||.|.| -|. |.. .++|..+.++.-.+.|
T Consensus 15 ~L~~~~~-~Hl-~VlRl~~Gd~v~l-dg~--g~~~~a~i~~~~~~~~~~~i 60 (229)
T 2egv_A 15 ILREGEV-KHF-RVRRIEKDEEFGV-IHE--GKIYVCKVRREDKREISCEI 60 (229)
T ss_dssp EEETHHH-HHH-HHTTCCTTCCEEE-EET--TEEEEEEEEEECSSEEEEEE
T ss_pred EeCHHHH-HHH-HhhcCCCCCEEEE-eCC--CCEEEEEEEEecCCEEEEEE
Confidence 3555544 344 8899999999999 776 443 3788888766444443
No 125
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=24.21 E-value=48 Score=19.69 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=14.3
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-.+.|
T Consensus 21 eLs~~~Gd~i~v~~~~~~~ 39 (62)
T 1k4u_S 21 DLEFQEGDIILVLSKVNEE 39 (62)
T ss_dssp BCCBCSSCEEEEEEESSSS
T ss_pred CccCCCCCEEEEEEeCCCC
Confidence 3568999999999864443
No 126
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=24.15 E-value=25 Score=21.90 Aligned_cols=14 Identities=7% Similarity=0.095 Sum_probs=11.5
Q ss_pred ccceecCCeEEEee
Q psy10530 59 SMPVRKDDEVQVVR 72 (141)
Q Consensus 59 s~~IrkGD~V~Vi~ 72 (141)
-+.+++||.|.|+.
T Consensus 26 eLsf~~Gd~i~v~~ 39 (72)
T 1ugv_A 26 ELSFTAGTVFDNVH 39 (72)
T ss_dssp BCCBCTTCEEBSCC
T ss_pred EeCCcCCCEEEEEE
Confidence 35689999999886
No 127
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=23.95 E-value=79 Score=21.10 Aligned_cols=38 Identities=26% Similarity=0.390 Sum_probs=28.1
Q ss_pred eeeccCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEE
Q psy10530 42 IMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVV 84 (141)
Q Consensus 42 ~msapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~ 84 (141)
..-+.+|--+|. ..+.|..||.|.|--=+|--.. |.|+
T Consensus 38 ~~~c~i~GK~Rk----~~I~Il~GD~V~ve~~~yd~~k-grIi 75 (79)
T 3i4o_A 38 KVLAHISGKMRQ----HYIRILPEDRVVVELSPYDLSR-GRIV 75 (79)
T ss_dssp EEEEEECHHHHH----TTCCCCTTCEEEEEEETTEEEE-EEEE
T ss_pred EEEEEeCcceec----CCccCCCCCEEEEEECccCCCc-EEEE
Confidence 346888888887 3456999999999777776555 7765
No 128
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=23.68 E-value=1.4e+02 Score=22.88 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=34.0
Q ss_pred ccCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEccCCEEEEe
Q psy10530 45 APLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIE 96 (141)
Q Consensus 45 apLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VE 96 (141)
-.|+.|- ..|=.+-++++.||.|.|.-|.- ...++|..+.+ .-.+.|.
T Consensus 13 ~~L~~~~-~~Hl~~VlRl~~Gd~v~l~dg~g--~~~a~i~~~~~-~~~~~i~ 60 (228)
T 1v6z_A 13 GVLPLRE-TRHLVEVLRARVGDRFTVFDGER--EALAEVVDLGP-PLRYRVL 60 (228)
T ss_dssp SBCCHHH-HHHHHTTSCCCTTCEEEEECSSC--EEEEEEEECCS-SCEEEEE
T ss_pred EEeCHHH-HHHHHHhccCCCCCEEEEEeCCc--EEEEEEEECCC-eEEEEEE
Confidence 3466643 35656888999999999998874 22478888877 6555554
No 129
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=23.55 E-value=53 Score=19.13 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=14.0
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-.+-|
T Consensus 17 eLs~~~Gd~i~v~~~~~~~ 35 (58)
T 1uti_A 17 ELGFRSGEVVEVLDSSNPS 35 (58)
T ss_dssp BCCBCTTCEEEEEECCSSS
T ss_pred CCCCCCCCEEEEEEECCCC
Confidence 3558999999999854433
No 130
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A
Probab=23.45 E-value=1.3e+02 Score=18.89 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=14.2
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-...|
T Consensus 21 eLs~~~Gd~i~vl~~~~~~ 39 (79)
T 3cqt_A 21 DLSFHKGEKFQILNSSEGD 39 (79)
T ss_dssp BCCBCTTCEEEEEECTTSS
T ss_pred cCCCCCCCEEEEEEecCCC
Confidence 4568999999999755433
No 131
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=23.41 E-value=42 Score=19.66 Aligned_cols=15 Identities=13% Similarity=0.476 Sum_probs=12.5
Q ss_pred ccceecCCeEEEeec
Q psy10530 59 SMPVRKDDEVQVVRG 73 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G 73 (141)
-+.+++||.|.|+.-
T Consensus 18 eLs~~~Gd~i~v~~~ 32 (60)
T 2v1q_A 18 ELTIKSGDKVYILDD 32 (60)
T ss_dssp BCCBCTTCEEEEEES
T ss_pred CccCCCCCEEEEEeC
Confidence 356899999999984
No 132
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.26 E-value=1.2e+02 Score=23.88 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=26.1
Q ss_pred CcccceecCCeEEEeecC----CCCeeeceEEEEEccCC
Q psy10530 57 VRSMPVRKDDEVQVVRGH----YKGQQVGKVVQSYRKKF 91 (141)
Q Consensus 57 ~rs~~IrkGD~V~Vi~G~----~KGk~~GkV~~V~rkk~ 91 (141)
.+..+|++||.| |.+|- .+|-.+|+|.+|.+..+
T Consensus 165 ~~~~~i~~GD~V-vTSGl~gifP~GipVG~V~~V~~~~~ 202 (255)
T 2j5u_A 165 PYDMKFKKGQKV-VTSGLGGKFPAGIFIGTIEKVETDKM 202 (255)
T ss_dssp ETTSCCCTTCEE-EECCTTSSSCTTCEEEEEEEEEECTT
T ss_pred CCCCCCCCCCEE-EECCCCCcCCCCCEEEEEEEEeeCCC
Confidence 345679999985 56664 46887899999998764
No 133
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=23.25 E-value=55 Score=19.02 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=14.2
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
.+.+++||.|.|+.-...|
T Consensus 19 eLs~~~Gd~i~v~~~~~~~ 37 (58)
T 2drm_A 19 ELTFKEGDTIIVHQKDPAG 37 (58)
T ss_dssp BCCBCTTCEEEEEECCTTS
T ss_pred CcCCCCCCEEEEEEecCCC
Confidence 3568999999998764433
No 134
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=23.08 E-value=64 Score=19.42 Aligned_cols=14 Identities=7% Similarity=0.294 Sum_probs=12.0
Q ss_pred cceecCCeEEEeec
Q psy10530 60 MPVRKDDEVQVVRG 73 (141)
Q Consensus 60 ~~IrkGD~V~Vi~G 73 (141)
+.+++||.+.|+..
T Consensus 25 Lsf~~Gd~i~v~~~ 38 (67)
T 3rnj_A 25 LSFKEGDLITLLVP 38 (67)
T ss_dssp CCBCTTCEEEECSS
T ss_pred ccCCCCCEEEEeec
Confidence 56899999999965
No 135
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.07 E-value=1.1e+02 Score=18.75 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=14.4
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-.+.|
T Consensus 23 eLs~~~Gd~i~v~~~~~~~ 41 (77)
T 2d8j_A 23 DLSFRAGDKLQVLDTSHEG 41 (77)
T ss_dssp BCCBCTTCCEEEEECCSSS
T ss_pred ccCCCCCCEEEEEECCCCC
Confidence 3558999999999865444
No 136
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=23.05 E-value=1.6e+02 Score=19.21 Aligned_cols=37 Identities=24% Similarity=0.165 Sum_probs=21.3
Q ss_pred ceecCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEeccCCcE
Q psy10530 61 PVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGAT 107 (141)
Q Consensus 61 ~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K~~G~~ 107 (141)
|+..||++.+. ++|+.+..+++.+.++. .....+|..
T Consensus 87 Pv~~Gd~l~~~---------~~v~~~~~~~~~v~~~~-~~~n~~g~~ 123 (134)
T 1iq6_A 87 PVFVGDEVTAE---------VEVTALREDKPIATLTT-RIFTQGGAL 123 (134)
T ss_dssp CCBTTCEEEEE---------EEEEEECSSSSEEEEEE-EEECTTSCE
T ss_pred CCCCCCEEEEE---------EEEEEEECCCCEEEEEE-EEEeCCCCE
Confidence 78899987762 56666655445444442 233445543
No 137
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=22.96 E-value=63 Score=21.79 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=17.8
Q ss_pred ecCCeEEEeec--------------CCCCeeeceEEEEEc
Q psy10530 63 RKDDEVQVVRG--------------HYKGQQVGKVVQSYR 88 (141)
Q Consensus 63 rkGD~V~Vi~G--------------~~KGk~~GkV~~V~r 88 (141)
+.||.|.|.+. +.+|.+ |.|.++..
T Consensus 2 k~GdrVrV~~sv~Vyh~P~~r~~~fDl~GmE-GeV~~~v~ 40 (75)
T 1dj7_B 2 NVGDRVRVTSSVVVYHHPEHKKTAFDLQGME-GEVAAVLT 40 (75)
T ss_dssp CTTCEEEECSCCEESCCTTSTTSCEECTTCE-EEEEEECS
T ss_pred CCCCEEEEcccEEEEeCCccCCCCcccccCE-EEEEEEEe
Confidence 56888888642 246888 99988764
No 138
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=22.91 E-value=57 Score=24.39 Aligned_cols=29 Identities=24% Similarity=0.556 Sum_probs=21.3
Q ss_pred eccCCHHHHHhhCCcccceecCCeEEEeecCCCCee
Q psy10530 44 SAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQ 79 (141)
Q Consensus 44 sapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~ 79 (141)
-||.. ||+..| ++-||+|+|.-....+.+
T Consensus 111 IAp~~--LR~~L~-----LkDGD~V~I~v~~~~~~~ 139 (146)
T 2oyn_A 111 IAPMK--LREQFN-----LKDGDVIKILIKGDKDEE 139 (146)
T ss_dssp ECSSC--HHHHHT-----CCTTCEEEEEEECCTTC-
T ss_pred EcCcc--hhhhcC-----CCCCCEEEEEEeCCCCcc
Confidence 34444 888877 899999999877766655
No 139
>3fo8_D Tail sheath protein GP18; mostly beta, viral structural protein, bacteriophage T4, viral protein; 1.80A {Enterobacteria phage T4}
Probab=22.77 E-value=74 Score=26.32 Aligned_cols=30 Identities=13% Similarity=0.018 Sum_probs=22.8
Q ss_pred eecCCeEEEeecCCCCeeeceEEEEEccCC
Q psy10530 62 VRKDDEVQVVRGHYKGQQVGKVVQSYRKKF 91 (141)
Q Consensus 62 IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~ 91 (141)
-..||+|.|.-+..-=.+.|+|+.||....
T Consensus 28 Y~VGD~i~Vky~~~vve~~GkVT~VD~dGk 57 (283)
T 3fo8_D 28 YAVGDKITVKYVSDDIETEGKITEVDADGK 57 (283)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEEEECTTCC
T ss_pred ceeCCEEEEEEcCcEEecCceEEEEcCCCC
Confidence 578999999877644333599999999654
No 140
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=22.73 E-value=66 Score=23.59 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=20.6
Q ss_pred ceecCCeEEEe----------ecCCCCeeeceEEEEE
Q psy10530 61 PVRKDDEVQVV----------RGHYKGQQVGKVVQSY 87 (141)
Q Consensus 61 ~IrkGD~V~Vi----------~G~~KGk~~GkV~~V~ 87 (141)
+...||.|.|. .|.-.|++ |.|..+.
T Consensus 36 rF~vGDrVrvr~~~p~gHtRlP~YvRGk~-G~I~~~~ 71 (126)
T 2zzd_A 36 KFNVGDRVRIKDLPDLFYTRTMTYTRGAT-GTIVRLV 71 (126)
T ss_dssp SSCTTCEEEECCCCCSSCCSSCGGGTTCE-EEEEEEE
T ss_pred ccCCCCEEEEccCCCCCceeccHHhCCCE-EEEEEEe
Confidence 47899999995 45567898 9998775
No 141
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A
Probab=22.71 E-value=56 Score=20.29 Aligned_cols=16 Identities=13% Similarity=0.405 Sum_probs=12.9
Q ss_pred ccceecCCeEEEeecC
Q psy10530 59 SMPVRKDDEVQVVRGH 74 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~ 74 (141)
-+.+++||.|.|+.-.
T Consensus 25 eLs~~~Gd~i~v~~~~ 40 (74)
T 1gbq_A 25 ELSFKRGDILKVLNEE 40 (74)
T ss_dssp BCCBCTTCEEECCBCS
T ss_pred eeeEcCCCEEEEeEec
Confidence 4568999999999754
No 142
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=22.67 E-value=54 Score=19.46 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=12.5
Q ss_pred cceecCCeEEEeecCC
Q psy10530 60 MPVRKDDEVQVVRGHY 75 (141)
Q Consensus 60 ~~IrkGD~V~Vi~G~~ 75 (141)
+.+++||.|.|+.-.+
T Consensus 20 Ls~~~Gd~i~v~~~~~ 35 (62)
T 2fpe_A 20 LELEVDDPLLVELQAE 35 (62)
T ss_dssp CCBCTTCEEEEEEECT
T ss_pred CcCCCCCEEEEEEecC
Confidence 5589999999986544
No 143
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=22.67 E-value=56 Score=19.97 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=14.3
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-.+.|
T Consensus 17 eLs~~~Gd~i~v~~~~~~~ 35 (65)
T 2nwm_A 17 ELTLQKGDIVYIHKEVDKN 35 (65)
T ss_dssp BCCBCTTCEEEEEECCTTT
T ss_pred ccCCcCCCEEEEEEecCCC
Confidence 3568999999999765444
No 144
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=22.54 E-value=57 Score=18.92 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=13.7
Q ss_pred ccceecCCeEEEeecCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYK 76 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~K 76 (141)
-+.+++||.|.|+.-...
T Consensus 18 eLs~~~Gd~i~v~~~~~~ 35 (58)
T 2vwf_A 18 ELGFRRGDFIHVMDNSDP 35 (58)
T ss_dssp BCCBCTTCEEEEEECCSS
T ss_pred CcCCCCCCEEEEEEcCCC
Confidence 356899999999985443
No 145
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural protein; 1.75A {Gallus gallus}
Probab=22.52 E-value=1.5e+02 Score=18.49 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=14.6
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-.+.|
T Consensus 18 eLs~~~Gd~i~v~~~~~~~ 36 (80)
T 2pqh_A 18 EVTMKKGDILTLLNSTNKD 36 (80)
T ss_dssp BCCBCTTCEEEEEECCSSS
T ss_pred ccCCCCCCEEEEEEecCCC
Confidence 4568999999999865444
No 146
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=22.50 E-value=37 Score=22.87 Aligned_cols=35 Identities=14% Similarity=0.362 Sum_probs=22.5
Q ss_pred eeeeeccCCHHHHHhhCCc---------------ccceecCCeEEEeecC
Q psy10530 40 RRIMSAPLSKELRQKYNVR---------------SMPVRKDDEVQVVRGH 74 (141)
Q Consensus 40 ~k~msapLSkeLr~ky~~r---------------s~~IrkGD~V~Vi~G~ 74 (141)
+.+|+.-=-++|-++|++. .+-++.||.|+|++-.
T Consensus 14 H~iLs~eEk~~lL~~y~i~~~qLP~I~~~DPvar~~G~k~GdVvkI~R~S 63 (77)
T 1eik_A 14 HVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKS 63 (77)
T ss_dssp EEEECHHHHHHHHHHTTCCTTTSCCCBTTSHHHHGGGCCTTCEEEEEEEE
T ss_pred EEEcCHHHHHHHHHHcCCCHHHCCeeeCcCHhhHHhCCCCCCEEEEEECC
Confidence 4566666666777888853 3346677777777654
No 147
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=22.42 E-value=57 Score=19.39 Aligned_cols=19 Identities=5% Similarity=0.205 Sum_probs=14.0
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-.+.|
T Consensus 21 eLs~~~Gd~i~v~~~~~~~ 39 (62)
T 1uj0_A 21 ELTFKHGELITVLDDSDAN 39 (62)
T ss_dssp BCCBCTTCEEEEEECCSSS
T ss_pred CcCCCCCCEEEEEEeCCCC
Confidence 3568999999999854433
No 148
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=22.40 E-value=45 Score=19.64 Aligned_cols=16 Identities=25% Similarity=0.650 Sum_probs=13.1
Q ss_pred ccceecCCeEEEeecC
Q psy10530 59 SMPVRKDDEVQVVRGH 74 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~ 74 (141)
-+.+++||.|.|+.-.
T Consensus 19 eLs~~~Gd~i~v~~~~ 34 (60)
T 1oot_A 19 DLPFRKGDVITILKKS 34 (60)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred EeeEcCCCEEEEEEeC
Confidence 3568999999999764
No 149
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A
Probab=22.34 E-value=58 Score=20.99 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=13.6
Q ss_pred ccceecCCeEEEeecCC
Q psy10530 59 SMPVRKDDEVQVVRGHY 75 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~ 75 (141)
-+.+++||.|.|+.-.+
T Consensus 31 eLsf~~Gd~i~v~~~~~ 47 (92)
T 1jqq_A 31 EVALKKGDLMAILSKKD 47 (92)
T ss_dssp BCCBCTTCEEEEEEEEC
T ss_pred CcCCCCCCEEEEEECCC
Confidence 45689999999998654
No 150
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Probab=22.26 E-value=57 Score=19.70 Aligned_cols=19 Identities=5% Similarity=0.142 Sum_probs=14.5
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-.+.|
T Consensus 18 eLs~~~Gd~i~v~~~~~~~ 36 (67)
T 1gl5_A 18 DLRLERGQEYIILEKNDLH 36 (67)
T ss_dssp BCCBCTTCEEEEEECSSSS
T ss_pred eecCCcCCEEEEEEccCCC
Confidence 4568999999999865443
No 151
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=22.03 E-value=59 Score=19.20 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=14.4
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-..-|
T Consensus 19 eLs~~~Gd~i~v~~~~~~~ 37 (61)
T 1y0m_A 19 ELTFTKSAIIQNVEKQDGG 37 (61)
T ss_dssp BCCBCTTCEEEEEECCSSS
T ss_pred CcCCcCCCEEEEEEecCCC
Confidence 4568999999999865444
No 152
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=21.83 E-value=1.1e+02 Score=19.75 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=21.4
Q ss_pred cCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEE
Q psy10530 46 PLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQ 85 (141)
Q Consensus 46 pLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~ 85 (141)
.-..+|.++|+++++| ++.++.+ .|+. |+++.
T Consensus 63 ~~~~~~~~~~~i~~~P-----t~~~~~~--~~~~-G~~~~ 94 (118)
T 2f51_A 63 DKNGNAADAYGVSSIP-----ALFFVKK--EGNE-IKTLD 94 (118)
T ss_dssp TTCHHHHHHTTCCSSS-----EEEEEEE--ETTE-EEEEE
T ss_pred CCCHHHHHhcCCCCCC-----EEEEEeC--CCCc-ceEEE
Confidence 3357899999999998 3455543 2555 66654
No 153
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=21.81 E-value=56 Score=20.00 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=13.5
Q ss_pred cceecCCeEEEeecCCCC
Q psy10530 60 MPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 60 ~~IrkGD~V~Vi~G~~KG 77 (141)
+.+++||.|.|+.-.+.|
T Consensus 23 Ls~~~Gd~i~v~~~~~~g 40 (71)
T 2fpf_A 23 LELEVDDPLLVELQAEDY 40 (71)
T ss_dssp CCBCTTCEEEEEEECTTS
T ss_pred ccCcCCcEEEEeEecCCC
Confidence 568999999998654433
No 154
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=21.74 E-value=5 Score=30.08 Aligned_cols=38 Identities=11% Similarity=0.378 Sum_probs=29.9
Q ss_pred eecCCeEEEeecCCCCeeeceEEEEEccC------CEEEEeeeeE
Q psy10530 62 VRKDDEVQVVRGHYKGQQVGKVVQSYRKK------FVIYIEKIQR 100 (141)
Q Consensus 62 IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk------~~V~VEgvn~ 100 (141)
++.|-.|.|++|.|.|+. ..|++...+. +.+.|-||..
T Consensus 5 ~kpGkVvivl~GryaGkK-aVivk~~d~gt~drpy~halVaGIdr 48 (136)
T 3iz5_a 5 LKPGKAVILLQGRFAGRK-AVIVRVFEEGTRDRPYGHCLVAGLAK 48 (136)
T ss_dssp CCCCCSCCCCCSSSSCCC-CBCSCCSSSSSCSCSSCCSCCBCCST
T ss_pred ccCCEEEEEeccccCCcE-EEEEEecCCCCCCCccceEEEEeecc
Confidence 678999999999999999 7887765543 2677888754
No 155
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=21.66 E-value=1.2e+02 Score=19.04 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=19.0
Q ss_pred ceecCCeEEEeecCCCCeeeceEEEEEccCCEEEEe
Q psy10530 61 PVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIE 96 (141)
Q Consensus 61 ~IrkGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VE 96 (141)
.++.||+|. .+|+.|+..+++|.+.
T Consensus 45 ~~~~Gd~V~-----------v~V~~vd~~~~~i~ls 69 (80)
T 2k52_A 45 NLNVGDEII-----------VQAIDVRPEKREIDFK 69 (80)
T ss_dssp GCCTTCEEE-----------EEEEEEETTTTEEEEE
T ss_pred eeCCCCEEE-----------EEEEEEECCCCEEEEE
Confidence 478999986 4788888877777654
No 156
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=21.50 E-value=48 Score=22.01 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=18.4
Q ss_pred ccCCHHHHHhhCCcccceecCCeEEEeec
Q psy10530 45 APLSKELRQKYNVRSMPVRKDDEVQVVRG 73 (141)
Q Consensus 45 apLSkeLr~ky~~rs~~IrkGD~V~Vi~G 73 (141)
-.++.|.+++.| |++||++++.--
T Consensus 27 InIPaeI~kaLg-----Ik~gD~fel~ve 50 (68)
T 3o27_A 27 LLIPKDIAEALD-----IKPDDTFILNME 50 (68)
T ss_dssp EEECHHHHHHTT-----CCTTCCEEEEEE
T ss_pred EeCcHHHHHHhC-----CCCCCEEEEEEe
Confidence 356678888777 899999887654
No 157
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=21.46 E-value=1.1e+02 Score=17.89 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=14.4
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-...|
T Consensus 17 eLs~~~Gd~i~v~~~~~~~ 35 (65)
T 2oaw_A 17 EVTMKKGDILTLLNSTNKD 35 (65)
T ss_dssp BCCBCTTCEEEEEECCSSS
T ss_pred CCCCCCCCEEEEEEcCCCC
Confidence 4568999999999854433
No 158
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=21.38 E-value=62 Score=19.24 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=14.3
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-.+.|
T Consensus 22 eLs~~~Gd~i~v~~~~~~~ 40 (64)
T 2ak5_A 22 ELSFSKGDVIHVTRVEEGG 40 (64)
T ss_dssp BCCBCTTCEEEEEECCTTS
T ss_pred cccCCCCCEEEEeEecCCC
Confidence 4568999999999755443
No 159
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=21.24 E-value=62 Score=19.22 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=12.6
Q ss_pred ccceecCCeEEEeec
Q psy10530 59 SMPVRKDDEVQVVRG 73 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G 73 (141)
-+.+++||.|.|+.-
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (62)
T 2j6f_A 17 ELTIRVGEIIRNVKK 31 (62)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCcCCCEEEEEEe
Confidence 356899999999986
No 160
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=21.22 E-value=60 Score=18.94 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=14.1
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-..-|
T Consensus 18 eLs~~~Gd~i~v~~~~~~~ 36 (58)
T 1zx6_A 18 DLGLKPGDKVQLLEKLSPE 36 (58)
T ss_dssp BCCBCTTCEEEEEEECSSS
T ss_pred CccCCCCCEEEEEEecCCC
Confidence 3568999999999754433
No 161
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=21.19 E-value=59 Score=19.50 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=14.0
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.+.|+.-.+-|
T Consensus 22 eLs~~~Gd~i~v~~~~~~g 40 (65)
T 2j05_A 22 EISFLKGDMFIVHNELEDG 40 (65)
T ss_dssp BCCBCTTCEEEEEEECTTS
T ss_pred cCcCCCCCEEEEeEecCCC
Confidence 3558999999999754433
No 162
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=21.13 E-value=69 Score=25.30 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=21.2
Q ss_pred cceecCCeEEEe----------ecCCCCeeeceEEEEE
Q psy10530 60 MPVRKDDEVQVV----------RGHYKGQQVGKVVQSY 87 (141)
Q Consensus 60 ~~IrkGD~V~Vi----------~G~~KGk~~GkV~~V~ 87 (141)
-+...||.|.|. .|.-.|++ |.|..+.
T Consensus 129 ~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~-G~I~~~~ 165 (219)
T 3qyh_B 129 ARFAVGDKVRVLNKNPVGHTRMPRYTRGKV-GTVVIDH 165 (219)
T ss_dssp CCCCTTCEEEECCCCCSSCCCSCGGGTTCE-EEEEEEE
T ss_pred CCCCCCCEEEECCCCCCCcccccHHHCCCe-eEEEEEe
Confidence 458899999994 45667898 9997774
No 163
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=21.00 E-value=43 Score=19.51 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=12.5
Q ss_pred ccceecCCeEEEeecC
Q psy10530 59 SMPVRKDDEVQVVRGH 74 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~ 74 (141)
.+.+++||.|.|+.-.
T Consensus 17 eLs~~~Gd~i~v~~~~ 32 (59)
T 1yn8_A 17 ELRLAEGDIVFISYKH 32 (59)
T ss_dssp BCCBCTTCEEEEEEEE
T ss_pred CcCCCCCCEEEEEEcC
Confidence 3568999999998643
No 164
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=20.94 E-value=1.3e+02 Score=22.17 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=27.2
Q ss_pred HhhCCcccceecCCeEEEeecC----CCCeeeceEEEEEccCC
Q psy10530 53 QKYNVRSMPVRKDDEVQVVRGH----YKGQQVGKVVQSYRKKF 91 (141)
Q Consensus 53 ~ky~~rs~~IrkGD~V~Vi~G~----~KGk~~GkV~~V~rkk~ 91 (141)
=+|=-+...|++||.| |.+|- .+|-..|+|.+|.+..+
T Consensus 100 l~~i~~~~~i~~GD~v-vTSGl~g~fP~GipVG~V~~v~~~~~ 141 (172)
T 2qf4_A 100 ISQLNSNSDISAGDKV-TTGGLGNFNVADIPVGEVVATTHSTD 141 (172)
T ss_dssp EECCSCCCCCCTTCEE-EEECCSSSCCEEEEEEEEEEEESTTC
T ss_pred EEECCCCCCCCCCCEE-EECCCCCcCCCCCEEEEEEEEecCCC
Confidence 3344456689999985 56664 46777899999988754
No 165
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=20.85 E-value=80 Score=20.23 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=12.5
Q ss_pred ccceecCCeEEEeec
Q psy10530 59 SMPVRKDDEVQVVRG 73 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G 73 (141)
-+.+++||.|.|+.-
T Consensus 33 eLs~~~Gd~i~v~~~ 47 (91)
T 1wx6_A 33 ELNFEKGETMEVIEK 47 (91)
T ss_dssp BCCCCTTCEEEEEEC
T ss_pred cccCCCCCEEEEEEC
Confidence 356899999999985
No 166
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=20.85 E-value=62 Score=21.28 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=12.9
Q ss_pred ccceecCCeEEEeecC
Q psy10530 59 SMPVRKDDEVQVVRGH 74 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~ 74 (141)
-+.+++||.|.|+.-.
T Consensus 45 ELsf~~GD~I~Vl~~~ 60 (89)
T 2rf0_A 45 ELTLRRGDRVQVLSQD 60 (89)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred ccccCCCCEEEEEecc
Confidence 3568999999999863
No 167
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=20.83 E-value=47 Score=22.13 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=18.7
Q ss_pred CCcccceecCCeEEEeecCCCCee
Q psy10530 56 NVRSMPVRKDDEVQVVRGHYKGQQ 79 (141)
Q Consensus 56 ~~rs~~IrkGD~V~Vi~G~~KGk~ 79 (141)
+.-.+.++.||.|+|+.=.+-|-.
T Consensus 20 ~~~ei~lk~Gd~VeVl~k~~~gwW 43 (71)
T 1v1c_A 20 EQDAITLREGQYVEVLDAAHPLRW 43 (71)
T ss_dssp CTTBCCBCTTCEEEEEEEEETTEE
T ss_pred CcceeeecCCCEEEEEEcCCCCEE
Confidence 455778999999999986666644
No 168
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=20.70 E-value=98 Score=23.99 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=35.1
Q ss_pred eccCCHHHHHhhCCcccceecCCeEEEeecCCCCeeeceEEEEEc----cCCEEEEeeeeEecc
Q psy10530 44 SAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYR----KKFVIYIEKIQRDKV 103 (141)
Q Consensus 44 sapLSkeLr~ky~~rs~~IrkGD~V~Vi~G~~KGk~~GkV~~V~r----kk~~V~VEgvn~~K~ 103 (141)
.+.|+.+-.+++| |..||.|.|. |+ ++++ .|..|.+ ..+.|.++++.+.+.
T Consensus 41 ivrl~p~~m~~Lg-----l~~GD~V~I~-Gk-r~k~--Tva~v~~~~~~~~g~Irid~~~R~N~ 95 (211)
T 3qwz_A 41 VVSLSQPKMDELQ-----LFRGDTVLLK-GX-KRRE--AVCIVLSDDTCSDEKIRMNRVVRNNL 95 (211)
T ss_dssp EEEECHHHHHHHT-----CCBTCEEEEE-CS-TTCE--EEEEEEECTTSCTTEEEECHHHHHHT
T ss_pred EEEECHHHHHHcC-----CCCCCEEEEe-CC-CCCc--EEEEEEeCCCCCCCEEEeCHHHHhhc
Confidence 4679999999888 8899988776 65 3322 2333333 246888888877664
No 169
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=20.64 E-value=63 Score=19.06 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=14.4
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
.+.+++||.|.|+.-.+.|
T Consensus 20 eLs~~~Gd~i~v~~~~~~~ 38 (60)
T 1w70_A 20 ELNFKAGDVIFLLSRINKD 38 (60)
T ss_dssp BCCBCTTCEEEEEEECSSS
T ss_pred CccCCCCCEEEEEEeCCCC
Confidence 3568999999999865444
No 170
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=20.62 E-value=63 Score=19.50 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=14.7
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
.+.+++||.|.|+.-.+.|
T Consensus 29 eLs~~~Gd~i~v~~~~~~~ 47 (72)
T 4glm_A 29 ELDFEVGDKIRILATLEDG 47 (72)
T ss_dssp BCCBCTTCEEEEEEECSTT
T ss_pred cCCCCCCCEEEEEEccCCC
Confidence 3568999999999865554
No 171
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=20.53 E-value=94 Score=19.31 Aligned_cols=19 Identities=5% Similarity=0.286 Sum_probs=14.7
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-..-|
T Consensus 23 eLs~~~Gd~i~v~~~~~~g 41 (80)
T 1ue9_A 23 QLSLAPGQLILILKKNTSG 41 (80)
T ss_dssp BCCCCTTCEEEEEEECSSS
T ss_pred CCCCCCCCEEEEEEecCCC
Confidence 3568999999999865544
No 172
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A
Probab=20.48 E-value=90 Score=19.67 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=11.8
Q ss_pred ccceecCCeEEEee
Q psy10530 59 SMPVRKDDEVQVVR 72 (141)
Q Consensus 59 s~~IrkGD~V~Vi~ 72 (141)
-+.+++||.|.|+.
T Consensus 21 eLs~~~Gd~I~V~~ 34 (83)
T 3i5r_A 21 DIDLHLGDILTVNK 34 (83)
T ss_dssp BCCBCTTCEEEEEH
T ss_pred ccccCCCCEEEEee
Confidence 45689999999995
No 173
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=20.47 E-value=42 Score=23.57 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=11.5
Q ss_pred CHHHHHhhCCcccc
Q psy10530 48 SKELRQKYNVRSMP 61 (141)
Q Consensus 48 SkeLr~ky~~rs~~ 61 (141)
..+|.++||++++|
T Consensus 80 ~~~la~~~~V~~iP 93 (142)
T 2es7_A 80 SEAIGDRFNVRRFP 93 (142)
T ss_dssp HHHHHHTTTCCSSS
T ss_pred CHHHHHhcCCCcCC
Confidence 35788899999988
No 174
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=20.46 E-value=66 Score=19.57 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=13.7
Q ss_pred ccceecCCeEEEeecCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYK 76 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~K 76 (141)
-+.+++||.|.|+.-.+.
T Consensus 19 eLsf~~Gd~i~v~~~~~~ 36 (65)
T 1b07_A 19 DLPFKKGDILRIRDKPEE 36 (65)
T ss_dssp BCCBCTTCEEEEEECSSS
T ss_pred ccCCcCCCEEEEEEecCC
Confidence 356899999999985543
No 175
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=20.27 E-value=2.2e+02 Score=19.51 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=32.8
Q ss_pred cCCeEEEeecCCCCeeeceEEEEEccCCEEEEeeeeEeccCCc
Q psy10530 64 KDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGA 106 (141)
Q Consensus 64 kGD~V~Vi~G~~KGk~~GkV~~V~rkk~~V~VEgvn~~K~~G~ 106 (141)
-|-.|-+..|++-|---|+|..|+..++.|.+..+- .||-
T Consensus 8 iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f---~NG~ 47 (84)
T 2vc8_A 8 LGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF---HNGV 47 (84)
T ss_dssp TTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE---ETTE
T ss_pred cCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh---hCCC
Confidence 477899999999986559999999999999988773 4553
No 176
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.22 E-value=70 Score=20.02 Aligned_cols=17 Identities=6% Similarity=0.302 Sum_probs=13.4
Q ss_pred ccceecCCeEEEeecCC
Q psy10530 59 SMPVRKDDEVQVVRGHY 75 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~ 75 (141)
-+.+++||.|.|+.-.+
T Consensus 29 eLs~~~Gd~i~v~~~~~ 45 (78)
T 2dl5_A 29 ELTIEEHEVLEVIEDGD 45 (78)
T ss_dssp BCCBCSSEEEEEEECCS
T ss_pred CCCCCCCCEEEEEeccC
Confidence 35689999999998653
No 177
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.19 E-value=46 Score=20.97 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=12.2
Q ss_pred ccceecCCeEEEeec
Q psy10530 59 SMPVRKDDEVQVVRG 73 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G 73 (141)
-+.+++||.|.|+.-
T Consensus 33 eLs~~~Gd~i~v~~~ 47 (79)
T 1x6b_A 33 EVTLQQADVVLVLQQ 47 (79)
T ss_dssp BCCCCTTEEEEEEEE
T ss_pred CcCCCCCCEEEEEEe
Confidence 356899999999875
No 178
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=20.17 E-value=65 Score=18.92 Aligned_cols=19 Identities=11% Similarity=0.417 Sum_probs=14.3
Q ss_pred ccceecCCeEEEeecCCCC
Q psy10530 59 SMPVRKDDEVQVVRGHYKG 77 (141)
Q Consensus 59 s~~IrkGD~V~Vi~G~~KG 77 (141)
-+.+++||.|.|+.-.+.|
T Consensus 21 eLs~~~Gd~i~v~~~~~~~ 39 (60)
T 2xmf_A 21 ELSFNANDIIDIIKEDPSG 39 (60)
T ss_dssp BCCBCTTCEEEEEEECTTS
T ss_pred CcCCCCCCEEEEEEecCCC
Confidence 3568999999999865443
Done!