RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10530
(141 letters)
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 145
Score = 151 bits (383), Expect = 2e-48
Identities = 102/128 (79%), Positives = 115/128 (89%)
Query: 14 MKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRG 73
MK N VTS R KNRKRHFNAPSHIRR+IMS+PLSKELRQKYNVRSMP+RKDDEVQVVRG
Sbjct: 1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60
Query: 74 HYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIE 133
HYKGQQ+GKVVQ YRKK+VIYIE++QR+K NG TV+VGIHPSK VI +LK+DKDRKKI+E
Sbjct: 61 HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120
Query: 134 RRAKGRAA 141
R+AK R
Sbjct: 121 RKAKSRQV 128
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_S 4a1c_S 4a1e_S
Length = 135
Score = 137 bits (345), Expect = 7e-43
Identities = 69/128 (53%), Positives = 95/128 (74%), Gaps = 1/128 (0%)
Query: 14 MKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRG 73
MK + V+S+RRK RK HF +PSH+R+ +MSA LSK+LR KYNVRSMPVRKDDEV +VRG
Sbjct: 1 MKTHVEVSSARRKQRKAHFASPSHLRQTLMSAHLSKDLRSKYNVRSMPVRKDDEVLIVRG 60
Query: 74 HYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIE 133
+KG + GKV Q YRKK+ I++EKI ++K+NGA + + S+ V+ KLK+DK R+ ++
Sbjct: 61 KFKGNK-GKVTQVYRKKWAIHVEKISKNKLNGAPYQIPLSASQLVLTKLKLDKSRQSLLT 119
Query: 134 RRAKGRAA 141
R+A
Sbjct: 120 RKAASLKT 127
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Y
Length = 150
Score = 136 bits (344), Expect = 2e-42
Identities = 89/128 (69%), Positives = 108/128 (84%), Gaps = 1/128 (0%)
Query: 14 MKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRG 73
MK N VTSSRRK RK HF APS +RR +MSA LS ELR KYNVRS+P+RKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 74 HYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIE 133
YKG++ GKVVQ YR+++VI++E+I R+KVNG+TV VGIHPSK V+ KLK+DKDRK I++
Sbjct: 61 SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119
Query: 134 RRAKGRAA 141
R+A GRAA
Sbjct: 120 RKASGRAA 127
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L
2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 1s1i_U 3izc_Y 3izs_Y
3jyw_U
Length = 127
Score = 135 bits (341), Expect = 3e-42
Identities = 65/125 (52%), Positives = 92/125 (73%), Gaps = 1/125 (0%)
Query: 15 KLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGH 74
K + V+S RRK RK +F APS RR ++SAPLSKELR +Y ++++P+R+DDEV VVRG
Sbjct: 3 KQSLDVSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGS 62
Query: 75 YKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDKDRKKIIER 134
KGQ+ GK+ YR KF + ++K+ ++KVNGA+V + +HPSK VI KL +DKDRK +I+R
Sbjct: 63 KKGQE-GKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLDKDRKALIQR 121
Query: 135 RAKGR 139
+
Sbjct: 122 KGGKL 126
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T*
1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T*
1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T*
1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Length = 120
Score = 132 bits (333), Expect = 5e-41
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 20 VTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQ 79
++ K RK AP H R + + A LS +LR++Y R++ V D V+V+RG + G++
Sbjct: 1 MSKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEE 60
Query: 80 VGKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKM-DKDRKKIIERRAK 137
G+V+ K VI++E + +K +G V + S + L + D+ R+ +E
Sbjct: 61 -GEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDD 118
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 191
Score = 31.7 bits (72), Expect = 0.051
Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 3/98 (3%)
Query: 1 MNAATRSSGTEVKMKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSM 60
+ + SS + + +L T+ + K +R +
Sbjct: 10 FTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKP--NSLPKLHKR 67
Query: 61 PVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKI 98
V+ D V+V+ G KG+ G++ + ++ + I+ +
Sbjct: 68 HVKVGDTVKVISGGEKGKI-GEISKIHKHNSTVIIKDL 104
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y
2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y
2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Length = 110
Score = 30.6 bits (70), Expect = 0.067
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 60 MPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKI 98
M V+K D V V G YKG+ GKV + KK+ + +E +
Sbjct: 5 MHVKKGDTVLVASGKYKGRV-GKVKEVLPKKYAVIVEGV 42
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S*
1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R*
3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V
1vow_V 1voy_V 1vp0_V
Length = 115
Score = 30.3 bits (69), Expect = 0.10
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 60 MPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKI 98
+ +K D V V+ G +KGQ GKV+ + + + +E +
Sbjct: 14 LHFKKGDTVIVLSGKHKGQT-GKVLLALPRDQKVVVEGV 51
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
2j28_U* 3fik_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U
3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U
1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U 3i20_U ...
Length = 102
Score = 27.9 bits (63), Expect = 0.61
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 59 SMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVI 93
+ +R+DDEV V+ G KG++ GKV VI
Sbjct: 1 AAKIRRDDEVIVLTGKDKGKR-GKVKNVLSSGKVI 34
>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 317
Score = 27.3 bits (60), Expect = 1.9
Identities = 11/97 (11%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 8 SGTEVKMKLNKLVTSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDE 67
G + ++ + + +++ + S ++R +++AP + ++ + + + +
Sbjct: 84 MGYNFSILIDLQQLPATDEEKEQLAMSISMLKRNVLAAPFHRAFTKQAELADLARKDPEN 143
Query: 68 VQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVN 104
++ Q++ + YR + I + + D+V
Sbjct: 144 APMLDKQATSQELMAIH--YRDEETIVLWP-EHDRVT 177
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 26.1 bits (58), Expect = 2.2
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 48 SKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEK 97
+++ +YN+ SMP ++ G +V + + K+ I+
Sbjct: 63 CEDIAMEYNISSMPT-----FVFLK---NGVKVEEFAGANAKRLEDVIKA 104
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome,
large ribosomal subunit, ribosomal R ribosome; 12.10A
{Bos taurus} PDB: 3iy9_N
Length = 96
Score = 26.0 bits (58), Expect = 2.2
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 66 DEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKI 98
D V+++ G G+Q GKVVQ R++ + + +
Sbjct: 2 DTVEILEGKDAGKQ-GKVVQVIRQRNWVVVGGL 33
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 26.2 bits (58), Expect = 2.3
Identities = 6/49 (12%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 49 KELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEK 97
E+ + + + ++P ++ G + ++ + K++V +E
Sbjct: 66 SEISELFEISAVPY-----FIIIHK---GTILKELSGADPKEYVSLLED 106
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 26.1 bits (58), Expect = 2.6
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 49 KELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKI 98
++ ++ V +MP + + GQ +GK++ + I+ +
Sbjct: 73 PDIAKECEVTAMPT-----FVLGKD---GQLIGKIIGANPTALEKGIKDL 114
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 25.7 bits (57), Expect = 3.8
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 49 KELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEK 97
++ QK V +MP + + + G++V KVV + I
Sbjct: 67 GDVAQKNEVSAMPT-----LLLFKN---GKEVAKVVGANPAAIKQAIAA 107
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 25.4 bits (56), Expect = 4.5
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 49 KELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEK 97
++ Q+ +R+MP + GQ++ VV + K I +
Sbjct: 78 SQIAQEVGIRAMPT-----FVFFKN---GQKIDTVVGADPSKLQAAITQ 118
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 25.5 bits (56), Expect = 4.9
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 48 SKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQR 100
S+ + ++NVR P V G+ G + + + ++
Sbjct: 80 SEAIGDRFNVRRFPA-----TLVFTD---GKLRGALSGIHPWA--ELLTLMRS 122
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 25.4 bits (56), Expect = 5.4
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 49 KELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEK 97
K L ++ +R +P ++++ VG+V + K + I+
Sbjct: 68 KTLAKELGIRVVPT-----FKILKE---NSVVGEVTGAKYDKLLEAIQA 108
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 25.4 bits (56), Expect = 5.6
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 49 KELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEK 97
K L ++ +R +P ++++ VG+V + K + I+
Sbjct: 81 KTLAKELGIRVVPT-----FKILKE---NSVVGEVTGAKYDKLLEAIQA 121
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 25.0 bits (55), Expect = 5.8
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 49 KELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEK 97
+E +KYN+ +MP ++ G++VG VV + K I+K
Sbjct: 75 EETARKYNISAMPT-----FIAIK---NGEKVGDVVGASIAKVEDMIKK 115
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 25.0 bits (55), Expect = 5.8
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 49 KELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEK 97
+++ + V+SMP Q + KGQ+VG+ + ++K I +
Sbjct: 74 QDVASECEVKSMPT-----FQFFK---KGQKVGEFSGANKEKLEATINE 114
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 24.9 bits (55), Expect = 5.9
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 49 KELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEK 97
+++ + V+SMP Q + KGQ+VG+ + ++K I +
Sbjct: 63 QDVASESEVKSMPT-----FQFFK---KGQKVGEFSGANKEKLEATINE 103
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 25.1 bits (55), Expect = 6.0
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 10/52 (19%)
Query: 49 KELRQKYNVRSMP---VRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEK 97
Y V S+P K + + + + V + + IEK
Sbjct: 66 GNAADAYGVSSIPALFFVKK-------EGNEIKTLDQFVGADVSRIKADIEK 110
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 25.0 bits (55), Expect = 6.2
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 49 KELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEK 97
K++ + YNV +MP ++ G++V VV + I
Sbjct: 71 KDVAEAYNVEAMPT-----FLFIKD---GEKVDSVVGGRKDDIHTKIVA 111
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 25.1 bits (55), Expect = 6.9
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 8/36 (22%)
Query: 49 KELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVV 84
KE+ +KYNV +MP ++ G + KVV
Sbjct: 79 KEVAEKYNVEAMPT-----FLFIKD---GAEADKVV 106
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 25.2 bits (55), Expect = 7.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 47 LSKELRQKYNVRSMPVRKDDEVQV 70
L KEL + YN +P ++D V V
Sbjct: 6 LYKELVKNYNPDVIPTQRDRPVTV 29
>1gh2_A Thioredoxin-like protein; redox-active center, electron
transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 24.6 bits (54), Expect = 8.6
Identities = 4/36 (11%), Positives = 10/36 (27%), Gaps = 8/36 (22%)
Query: 49 KELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVV 84
+ N+ + P Q R ++ +
Sbjct: 64 QGTAATNNISATPT-----FQFFR---NKVRIDQYQ 91
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 24.6 bits (54), Expect = 9.3
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 49 KELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEK 97
E+ +K N+ SMP +V + G V ++ + IEK
Sbjct: 69 SEVTEKENITSMPT-----FKVYKN---GSSVDTLLGANDSALKQLIEK 109
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula}
SCOP: c.47.1.1
Length = 113
Score = 24.6 bits (54), Expect = 9.3
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 8/36 (22%)
Query: 49 KELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVV 84
K + +++NV +MP ++ G+ V K V
Sbjct: 69 KAVAEEWNVEAMPT-----FIFLKD---GKLVDKTV 96
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 24.8 bits (54), Expect = 9.6
Identities = 6/49 (12%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 49 KELRQKYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEK 97
E+ +KY + S+P + Q++ ++ ++ + +++
Sbjct: 75 PEVSEKYEISSVPT-----FLFFKN---SQKIDRLDGAHAPELTKKVQR 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.362
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,070,142
Number of extensions: 115995
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 50
Length of query: 141
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,356,429
Effective search space: 248316453
Effective search space used: 248316453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.8 bits)