RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10530
         (141 letters)



>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 119

 Score =  123 bits (310), Expect = 5e-38
 Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 2/118 (1%)

Query: 21  TSSRRKNRKRHFNAPSHIRRRIMSAPLSKELRQKYNVRSMPVRKDDEVQVVRGHYKGQQV 80
           +    K RK    AP H R + + A LS +LR++Y  R++ V   D V+V+RG + G++ 
Sbjct: 1   SKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEE- 59

Query: 81  GKVVQSYRKKFVIYIEKIQRDKVNGATVYVGIHPSKCVIVKLKMDK-DRKKIIERRAK 137
           G+V+     K VI++E +  +K +G  V   +  S   +  L ++   R+  +E    
Sbjct: 60  GEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDD 117


>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p)
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 110

 Score = 30.9 bits (70), Expect = 0.021
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 54  KYNVRSMPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQR 100
            ++   +  +K D V V+ G +KGQ  GKV+ +  +   + +E +  
Sbjct: 5   SHHNDKLHFKKGDTVIVLSGKHKGQT-GKVLLALPRDQKVVVEGVNV 50


>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus
           thermophilus [TaxId: 274]}
          Length = 101

 Score = 28.5 bits (64), Expect = 0.12
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 60  MPVRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQR 100
           M V+K D V V  G YKG+  GKV +   KK+ + +E +  
Sbjct: 4   MHVKKGDTVLVASGKYKGRV-GKVKEVLPKKYAVIVEGVNI 43


>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p)
           {Escherichia coli [TaxId: 562]}
          Length = 99

 Score = 25.0 bits (55), Expect = 1.8
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 62  VRKDDEVQVVRGHYKGQQVGKVVQSYRKKFVIYIEKIQRDKVNGAT 107
           +R+DDEV V+ G  KG++ GKV        VI        K     
Sbjct: 2   IRRDDEVIVLTGKDKGKR-GKVKNVLSSGKVIVEGINLVKKHQKPV 46


>d2rdea2 b.45.2.2 (A:24-137) Hypothetical protein VCA0042,
           N-terminal domain {Vibrio cholerae O395 [TaxId: 345073]}
          Length = 114

 Score = 24.0 bits (52), Expect = 5.9
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 102 KVNGATVYVGIHPSKCVIVKLKMDKDRKK 130
           K    T ++G H  K ++V++        
Sbjct: 30  KFVCRTPFIGTHTDKFLLVEMPKISADDL 58


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.362 

Gapped
Lambda     K      H
   0.267   0.0670    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 505,030
Number of extensions: 22909
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 15
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)