BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10531
(564 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GG4|A Chain A, The Crystal Structure Of Glycerol Kinase From Yersinia
Pseudotuberculosis
pdb|3GG4|B Chain B, The Crystal Structure Of Glycerol Kinase From Yersinia
Pseudotuberculosis
pdb|3L0Q|A Chain A, The Crystal Structure Of Xlylulose Kinase From Yersinia
Pseudotuberculosis
pdb|3L0Q|B Chain B, The Crystal Structure Of Xlylulose Kinase From Yersinia
Pseudotuberculosis
Length = 554
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/429 (48%), Positives = 279/429 (65%), Gaps = 10/429 (2%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y + VDVGT S RA + +G+ A R I + PK EQSSE+IW +VC A+RD
Sbjct: 6 YFIGVDVGTGSARAGVFDLQGRXVGQASREITXFKPKADFVEQSSENIWQAVCNAVRDAV 65
Query: 63 K--DVNPAQIKGVGVDATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINA 120
D+NP Q+KG+G DATCSLV LD PLT+SP+G + +NV++W DHRA+++A++INA
Sbjct: 66 NQADINPIQVKGLGFDATCSLVVLDKEGNPLTVSPSGRNEQNVIVWXDHRAITQAERINA 125
Query: 121 TKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQSLC 180
TKH VL+ VGG ISPE +TPKLLWLK++ P+T W G FDLPDFLTW+ T DET+SLC
Sbjct: 126 TKHPVLEFVGGVISPEXQTPKLLWLKQHXPNT-WSNVGHLFDLPDFLTWRATKDETRSLC 184
Query: 181 SLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVARALG 240
S VCKWTY ++ RW+ YF+ +GL DL N IG TVK G P+GHG+S A G
Sbjct: 185 STVCKWTYLGHEDRWDPSYFKLVGLADLLDNNAAKIGATVKPXGAPLGHGLSQRAASEXG 244
Query: 241 LNPGTPVSVSMIDAHAGALALL-ATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQVPG 299
L PGT VSVS+IDAHAG + +L A+ G + D ++ LI GTST H A S + G
Sbjct: 245 LIPGTAVSVSIIDAHAGTIGILGASGVTGENANFDRRIALIGGTSTAHXAXSRSAHFISG 304
Query: 300 VWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVI 359
+WGPYY ILP L E GQSATG L+DHII +HP +++++ + + + LN+++
Sbjct: 305 IWGPYYSAILPEYWLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKG-ETIYEALNYIL 363
Query: 360 -----DTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQ 414
+ ++ LT D H P FHGNRSP A+ ++ G+I GL L ++ YLATIQ
Sbjct: 364 RQXAGEPENIAFLTNDIHXLPYFHGNRSPRANPNLTGIITGLKLSTTPEDXALRYLATIQ 423
Query: 415 ALADVTKDV 423
ALA T+ +
Sbjct: 424 ALALGTRHI 432
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 64/102 (62%), Gaps = 2/102 (1%)
Query: 462 LTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDA 521
LT D H P FHGNRSP A+ ++ G+I GL L ++ YLATIQALA GTRHI++
Sbjct: 376 LTNDIHXLPYFHGNRSPRANPNLTGIITGLKLSTTPEDXALRYLATIQALALGTRHIIET 435
Query: 522 MHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563
+ G I T SGG KNP++VQ HA+ TGC L P+E
Sbjct: 436 XNQNGYN--IDTXXASGGGTKNPIFVQEHANATGCAXLLPEE 475
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 399 DSSETSLVTLYLATIQALADVTK--DVNPAQIKGVGVDATCSLVALDTNHQPLTISPTDT 456
D E S ++ A A+ D D+NP Q+KG+G DATCSLV LD PLT+SP+
Sbjct: 44 DFVEQSSENIWQAVCNAVRDAVNQADINPIQVKGLGFDATCSLVVLDKEGNPLTVSPSGR 103
Query: 457 RHSTELTADFHVWPD 471
+ VW D
Sbjct: 104 NEQNVI-----VWXD 113
>pdb|3QDK|A Chain A, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
pdb|3QDK|B Chain B, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
pdb|3QDK|C Chain C, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
pdb|3QDK|D Chain D, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
Length = 572
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 129/463 (27%), Positives = 213/463 (46%), Gaps = 58/463 (12%)
Query: 2 EYLLSVDVGTSSVRAALVS-TRGK-----VSPIAVRPIALWCPKPQL---YE---QSSED 49
+Y + VD GT S RA L+ + G+ V+P I + P + +E Q D
Sbjct: 5 KYTIGVDYGTESGRAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLD 64
Query: 50 IWNSVCLAIRDVTKD--VNPAQIKGVGVDAT-CSLVALDTNHQPLTISPTGDDSRN--VL 104
+ ++ V K+ V+ + G+GVD T C+++ +D QPL + D+ + V
Sbjct: 65 YVEVLTTSVPAVMKESGVDADDVIGIGVDFTACTMLPVDEEGQPLCLLAQYKDNPHSWVK 124
Query: 105 LWMDHRAVSEADQINATKH----SVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLF 160
LW H A +A+ IN + L GGKIS E K+ W + + + R F
Sbjct: 125 LWKHHAAQDKANAINEMAEKRGEAFLPRYGGKISSEWMIAKV-WQILDEAEDVYNRTDQF 183
Query: 161 FDLPDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYFEKIG--LGDLKQNGWRAIGN 218
+ D++ ++TG ++ C+ K + + + ++F+ + L L R G+
Sbjct: 184 LEATDWIVSQMTGKIVKNSCTAGYKAIWHKREGYPSNEFFKALDPRLEHLTTTKLR--GD 241
Query: 219 TVKNPGQPIGH---GVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDS 275
V P+G G+ E+A +GLNPG V+V +DAHA A+ + + PG
Sbjct: 242 IV-----PLGERAGGLLPEMAEKMGLNPGIAVAVGNVDAHA-AVPAVGVTTPG------- 288
Query: 276 KLGLICGTSTCHMALSAKKVQVPGVWGPYYEVILPNTHLLESGQSATGKLL----DHIIN 331
KL + GTS CHM L K+ +V G+ G + I+P E+GQSA G + H ++
Sbjct: 289 KLVMAMGTSICHMLLGEKEQEVEGMCGVVEDGIIPGYLGYEAGQSAVGDIFAWFVKHGVS 348
Query: 332 NHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKG 391
++ K +N L ++ + S L D+ ++GNRS L D ++ G
Sbjct: 349 AATFDEAQEKGVNVHAL---LEEKASQLRPGESGLLALDW-----WNGNRSILVDTELSG 400
Query: 392 MICGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVD 434
M+ G TL +T +Y A ++A A T+ + A G GV+
Sbjct: 401 MLLGYTL---QTKPEEIYRALLEATAFGTRAIVDA-FHGRGVE 439
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 472 FHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAI 531
++GNRS L D ++ GM+ G TL +T +Y A ++A A+GTR I+DA H G+ +
Sbjct: 386 WNGNRSILVDTELSGMLLGYTL---QTKPEEIYRALLEATAFGTRAIVDAFH--GRGVEV 440
Query: 532 STLLVSGGL-AKNPLYVQTHADVTGCNVLCPQEK 564
L GGL KN L +Q ADVT + K
Sbjct: 441 HELYACGGLPQKNHLLMQIFADVTNREIKVAASK 474
>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
pdb|2ZF5|Y Chain Y, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
Length = 497
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 100/451 (22%), Positives = 177/451 (39%), Gaps = 63/451 (13%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61
+++LS+D GT+S RA + + I P+P E + E+IW++ AI+D
Sbjct: 3 KFVLSLDEGTTSARAIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDA 62
Query: 62 TKD--VNPAQIKGVGV-DATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQI 118
+ + P QI +GV + + + D + +PL N ++W R ++I
Sbjct: 63 IQSARIEPNQIAAIGVTNQRETTLVWDKDGKPLY---------NAIVWQCRRTAEMVEEI 113
Query: 119 NATKHSVLDTVGGKI-SPEMETPKLLWLKKNLP---DTCWRRAGLFFDLPDFLTWKLTGD 174
+++ G + KL WL N+P + + +F + FL ++LTG+
Sbjct: 114 KREYGTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKAEKGEVMFGTVDTFLIYRLTGE 173
Query: 175 ETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTE 234
+ ++ W+++ E L D+ + ++ V+ + G+ E
Sbjct: 174 HVTDYSNASRTMLFNIKKLDWDDELLE---LFDIPE----SVLPEVRESSEVYGY-TKKE 225
Query: 235 VARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKK 294
+ L PVS D A A A + + G +T M L +
Sbjct: 226 L-----LGAEIPVSGDAGDQQAALFGQAAFEAGMVKATYGT--GSFILVNTDKMVLYSDN 278
Query: 295 VQVPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQY 354
+ WG V ++ LE TG + + + I TEELA
Sbjct: 279 LLTTIAWGLNGRV----SYALEGSIFVTGAAVQWL---RDGIKIIKHASETEELA----- 326
Query: 355 LNHVIDTQHSTELTADFHVW--PDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLAT 412
T+L ++ V+ P F G +P D +G+I G+T + L AT
Sbjct: 327 ----------TKLESNEGVYFVPAFVGLGAPYWDQFARGIIIGITRGTGREHLAR---AT 373
Query: 413 IQALADVTKDV-----NPAQIKGVGVDATCS 438
++A+A +T+DV QIK + VD +
Sbjct: 374 LEAIAYLTRDVVDEMEKLVQIKELRVDGGAT 404
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P F G +P D +G+I G+T + L AT++A+AY TR ++D M K
Sbjct: 339 PAFVGLGAPYWDQFARGIIIGITRGTGREHLAR---ATLEAIAYLTRDVVDEME---KLV 392
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCP 561
I L V GG N +Q AD+ V+ P
Sbjct: 393 QIKELRVDGGATANDFLMQFQADILNRKVIRP 424
>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|O Chain O, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|C Chain C, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|D Chain D, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H46|X Chain X, Glycerol Kinase H232e With Glycerol
pdb|3H46|O Chain O, Glycerol Kinase H232e With Glycerol
Length = 506
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 101/455 (22%), Positives = 171/455 (37%), Gaps = 80/455 (17%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSV--CLAIRD 60
Y++++D GT+S RA + GK + + + PK E ++ +IWNSV +A
Sbjct: 6 YVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAF 65
Query: 61 VTKDVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEADQ 117
+ + P I G+G+ TN + T+ TG N ++W ++ ADQ
Sbjct: 66 IESGIRPEAIAGIGI----------TNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQ 115
Query: 118 INATKHSVL--DTVGGKISPEMETPKLLWLKKNLPDTCWRRAG---LFFDLPDFLTWKLT 172
+ H+ + + G I K+ WL N+ + LF + +L WKLT
Sbjct: 116 LKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT 175
Query: 173 GDETQ--SLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHG 230
+ + Y+ + W+++ + + + ++ VK+ + GH
Sbjct: 176 DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPS-------SMLPEVKSNSEVYGHT 228
Query: 231 VSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMAL 290
S E P++ D A +A G+I T +
Sbjct: 229 RSYEF-----YGSEVPIAGMAGDQQAALFGQMAFEK-----------GMIKNTYGTGAFI 272
Query: 291 SAKKVQVPGVWGPYYEVILPNTHLLES-GQSATGK----LLDHIINNHPATQSIMKKLNT 345
+ P L + LL + G GK L I A Q + L
Sbjct: 273 VMNTGEEPQ---------LSDNDLLTTIGYGINGKVYYALEGSIFVAGSAIQWLRDGLRM 323
Query: 346 EELAPVIQYLNHVIDTQHSTELTA------DFHVWPDFHGNRSPLADADMKGMICGLTLD 399
E +P S EL A + +V P F G +P D++ +G + GLT
Sbjct: 324 IETSP------------QSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRG 371
Query: 400 SSETSLVTLYLATIQALADVTKDVNPAQIKGVGVD 434
+++ V AT+QA+A +KDV K G+D
Sbjct: 372 TTKEDFVR---ATLQAVAYQSKDVIDTMKKDSGID 403
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 458 HSTELTA------DFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQAL 511
S EL A + +V P F G +P D + +G + GLT +++ V AT+QA+
Sbjct: 329 QSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVR---ATLQAV 385
Query: 512 AYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNV 558
AY ++ ++D M I L V GG AKN L +Q AD+ +V
Sbjct: 386 AYQSKDVIDTMKKDSGID-IPLLKVDGGAAKNDLLMQFQADILDIDV 431
>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
pdb|3FLC|X Chain X, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
Length = 518
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 101/457 (22%), Positives = 171/457 (37%), Gaps = 84/457 (18%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSV--CLAIRD 60
Y++++D GT+S RA + GK + + + PK E ++ +IWNSV +A
Sbjct: 18 YVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAF 77
Query: 61 VTKDVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEADQ 117
+ + P I G+G+ TN + T+ TG N ++W ++ ADQ
Sbjct: 78 IESGIRPEAIAGIGI----------TNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQ 127
Query: 118 INATKHSVL--DTVGGKISPEMETPKLLWLKKNLPDTCWRRAG---LFFDLPDFLTWKLT 172
+ H+ + + G I K+ WL N+ + LF + +L WKLT
Sbjct: 128 LKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT 187
Query: 173 GDETQ--SLCSLVCKWTYDAYDRRWNEDYFEKIG-----LGDLKQN--------GWRAIG 217
+ + Y+ + W+++ + + L ++K N +R G
Sbjct: 188 DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYRFYG 247
Query: 218 NTVKNPGQPIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKL 277
+ V PI + A G MI G A + + P+ D+ L
Sbjct: 248 SEV-----PIAGMAGDQQAALFGQ---MAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDL 299
Query: 278 GLICGTSTCHMALSAKKVQVPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQ 337
G G+ G Y + LE G + + +
Sbjct: 300 LTTIGY---------------GINGKVY-------YALEGSIFVAGSAIQWL---RDGLR 334
Query: 338 SIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLT 397
I +EELA + N V +V P F G +P D++ +G + GLT
Sbjct: 335 MIETSPQSEELAAKAKGDNEV-------------YVVPAFTGLGAPYWDSEARGAVFGLT 381
Query: 398 LDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVD 434
+++ V AT+QA+A +KDV K G+D
Sbjct: 382 RGTTKEDFVR---ATLQAVAYQSKDVIDTMKKDSGID 415
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 458 HSTELTA------DFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQAL 511
S EL A + +V P F G +P D + +G + GLT +++ V AT+QA+
Sbjct: 341 QSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVR---ATLQAV 397
Query: 512 AYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNV 558
AY ++ ++D M I L V GG AKN L +Q AD+ +V
Sbjct: 398 AYQSKDVIDTMKKDSGID-IPLLKVDGGAAKNDLLMQFQADILDIDV 443
>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol
pdb|3H3N|O Chain O, Glycerol Kinase H232r With Glycerol
pdb|3H3O|O Chain O, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|X Chain X, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|B Chain B, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|C Chain C, Glycerol Kinase H232r With Ethylene Glycol
Length = 506
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 101/457 (22%), Positives = 171/457 (37%), Gaps = 84/457 (18%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSV--CLAIRD 60
Y++++D GT+S RA + GK + + + PK E ++ +IWNSV +A
Sbjct: 6 YVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAF 65
Query: 61 VTKDVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEADQ 117
+ + P I G+G+ TN + T+ TG N ++W ++ ADQ
Sbjct: 66 IESGIRPEAIAGIGI----------TNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQ 115
Query: 118 INATKHSVL--DTVGGKISPEMETPKLLWLKKNLPDTCWRRAG---LFFDLPDFLTWKLT 172
+ H+ + + G I K+ WL N+ + LF + +L WKLT
Sbjct: 116 LKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT 175
Query: 173 GDETQ--SLCSLVCKWTYDAYDRRWNEDYFEKIG-----LGDLKQN--------GWRAIG 217
+ + Y+ + W+++ + + L ++K N +R G
Sbjct: 176 DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYRFYG 235
Query: 218 NTVKNPGQPIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKL 277
+ V PI + A G MI G A + + P+ D+ L
Sbjct: 236 SEV-----PIAGMAGDQQAALFGQ---MAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDL 287
Query: 278 GLICGTSTCHMALSAKKVQVPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQ 337
G G+ G Y + LE G + + +
Sbjct: 288 LTTIGY---------------GINGKVY-------YALEGSIFVAGSAIQWL---RDGLR 322
Query: 338 SIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLT 397
I +EELA + N V +V P F G +P D++ +G + GLT
Sbjct: 323 MIETSPQSEELAAKAKGDNEV-------------YVVPAFTGLGAPYWDSEARGAVFGLT 369
Query: 398 LDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVD 434
+++ V AT+QA+A +KDV K G+D
Sbjct: 370 RGTTKEDFVR---ATLQAVAYQSKDVIDTMKKDSGID 403
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 458 HSTELTA------DFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQAL 511
S EL A + +V P F G +P D + +G + GLT +++ V AT+QA+
Sbjct: 329 QSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVR---ATLQAV 385
Query: 512 AYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNV 558
AY ++ ++D M I L V GG AKN L +Q AD+ +V
Sbjct: 386 AYQSKDVIDTMKKDSGID-IPLLKVDGGAAKNDLLMQFQADILDIDV 431
>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
pdb|2DPN|B Chain B, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
Length = 495
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 26/219 (11%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRD 60
M +LL++D GT+S RA L + G+ +A R PKP E +IW + A R+
Sbjct: 1 MAFLLALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAARE 60
Query: 61 VTKDVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRA--VSEA 115
V ++ G +A L TN + T+ TG N ++W D R + EA
Sbjct: 61 V--------LRRAGAEAGEVLALGITNQRETTLLWDRKTGKPLHNAIVWQDRRTTPLCEA 112
Query: 116 DQINATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAG---LFFDLPDFLTWKLT 172
+ + + G P KL+WL +N+P R G F + +L W LT
Sbjct: 113 LRAKGLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAEGGGVAFGTVDTWLIWNLT 172
Query: 173 G------DETQSLCSLVCKWTYDAYDRRWNEDYFEKIGL 205
G D T + +L+ ++ + W+ + E +G+
Sbjct: 173 GGKVHATDPTNASRTLL----FNLHTLAWDPELLEALGI 207
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 459 STELTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHI 518
S E T D + P F G +P D +G + GLT +S L A ++ +A+ R +
Sbjct: 331 SVEDTGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLAR---AALEGVAFQVRDV 387
Query: 519 MDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
+ AM + L GG+A+N L+++ AD+ G V P+
Sbjct: 388 VLAMEEEAGV-RLKVLKADGGMAQNRLFLKIQADLLGVPVAVPE 430
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 364 STELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDV 423
S E T D + P F G +P D +G + GLT +S L A ++ +A +DV
Sbjct: 331 SVEDTGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLAR---AALEGVAFQVRDV 387
Query: 424 NPAQIKGVGV 433
A + GV
Sbjct: 388 VLAMEEEAGV 397
>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|B Chain B, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|C Chain C, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|D Chain D, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3GE1|A Chain A, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|B Chain B, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|C Chain C, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|D Chain D, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
Length = 501
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61
+Y+LS+D GT+S RA L + +G+++ +A R + P+ E + +IW SV +V
Sbjct: 6 KYILSIDQGTTSSRAILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVXTEV 65
Query: 62 --TKDVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEAD 116
DV QI G+G+ TN + T+ TG + ++W + S
Sbjct: 66 INENDVRADQIAGIGI----------TNQRETTVVWDKHTGRPIYHAIVWQSRQTQSICS 115
Query: 117 QI--NATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAG---LFFDLPDFLTWKL 171
++ + + D G + P K+ W+ N+ + LF + +L WKL
Sbjct: 116 ELKQQGYEQTFRDKTGLLLDPYFAGTKVKWILDNVEGAREKAENGDLLFGTIDTWLVWKL 175
Query: 172 TG 173
+G
Sbjct: 176 SG 177
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 452 SPTDTRHSTEL--TADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQ 509
+P ++T + T +V P F G +P D + +G I GLT + + + AT++
Sbjct: 328 APQSESYATRVDSTEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFIR---ATLE 384
Query: 510 ALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
+L Y TR + +A + +L V GG KN Q AD+ +V P+
Sbjct: 385 SLCYQTRDVXEAXSKDSGID-VQSLRVDGGAVKNNFIXQFQADIVNTSVERPE 436
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 368 TADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDVNPAQ 427
T +V P F G +P D++ +G I GLT + + + AT+++L T+DV A
Sbjct: 341 TEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFIR---ATLESLCYQTRDVXEAX 397
Query: 428 IKGVGVD 434
K G+D
Sbjct: 398 SKDSGID 404
>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
pdb|1XUP|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
Length = 487
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 20/180 (11%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSV--CLAIRD 60
Y++++D GT+S RA + GK + + + PK E ++ +IWNSV +A
Sbjct: 1 YVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAF 60
Query: 61 VTKDVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEADQ 117
+ + P I G+G+ TN + T+ TG N ++W ++ ADQ
Sbjct: 61 IESGIRPEAIAGIGI----------TNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQ 110
Query: 118 INATKHSVL--DTVGGKISPEMETPKLLWLKKNLPDTCWRRAG---LFFDLPDFLTWKLT 172
+ H+ + + G I K+ WL N+ + LF + +L WKLT
Sbjct: 111 LKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT 170
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 458 HSTELTA------DFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQAL 511
S EL A + +V P F G +P D + +G + GLT +++ V AT+QA+
Sbjct: 324 QSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVR---ATLQAV 380
Query: 512 AYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNV 558
AY ++ ++D M I L V GG AKN L +Q AD+ +V
Sbjct: 381 AYQSKDVIDTMKKDSGID-IPLLKVDGGAAKNDLLMQFQADILDIDV 426
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 352 IQYLN---HVIDTQ-HSTELTA------DFHVWPDFHGNRSPLADADMKGMICGLTLDSS 401
IQ+L +I+T S EL A + +V P F G +P D++ +G + GLT ++
Sbjct: 309 IQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTT 368
Query: 402 ETSLVTLYLATIQALADVTKDVNPAQIKGVGVD 434
+ V AT+QA+A +KDV K G+D
Sbjct: 369 KEDFVR---ATLQAVAYQSKDVIDTMKKDSGID 398
>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|B Chain B, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|C Chain C, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|D Chain D, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
Length = 520
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 18/182 (9%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y+L++D GT+S RA + K++ + + PK E E+IW +V +++
Sbjct: 27 YILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEA- 85
Query: 63 KDVNPAQIKGVGVDATCSLVALDTNHQPLTI----SPTGDDSRNVLLWMDHRAVSEADQI 118
I+ G+ A + A+ +Q T+ TG N ++W D R + D++
Sbjct: 86 -------IEKSGITAN-DIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKL 137
Query: 119 NAT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAG---LFFDLPDFLTWKLTG 173
+ + + G + P KL WL N+ R A F + FL W+LTG
Sbjct: 138 KKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTG 197
Query: 174 DE 175
E
Sbjct: 198 GE 199
>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase
pdb|1R59|X Chain X, Enterococcus Casseliflavus Glycerol Kinase
Length = 505
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 20/180 (11%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSV--CLAIRD 60
Y++++D GT+S RA + GK + + + PK E ++ +IWNSV +A
Sbjct: 5 YVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAF 64
Query: 61 VTKDVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEADQ 117
+ + P I G+G+ TN + T+ TG N ++W ++ ADQ
Sbjct: 65 IESGIRPEAIAGIGI----------TNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQ 114
Query: 118 INATKHSVL--DTVGGKISPEMETPKLLWLKKNLPDTCWRRAG---LFFDLPDFLTWKLT 172
+ H+ + + G I K+ WL N+ + LF + +L WKLT
Sbjct: 115 LKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT 174
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 458 HSTELTA------DFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQAL 511
S EL A + +V P F G +P D + +G + GLT +++ V AT+QA+
Sbjct: 328 QSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVR---ATLQAV 384
Query: 512 AYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNV 558
AY ++ ++D M I L V GG AKN L +Q AD+ +V
Sbjct: 385 AYQSKDVIDTMKKDSGID-IPLLKVDGGAAKNDLLMQFQADILDIDV 430
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 352 IQYLN---HVIDTQ-HSTELTA------DFHVWPDFHGNRSPLADADMKGMICGLTLDSS 401
IQ+L +I+T S EL A + +V P F G +P D++ +G + GLT ++
Sbjct: 313 IQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTT 372
Query: 402 ETSLVTLYLATIQALADVTKDVNPAQIKGVGVD 434
+ V AT+QA+A +KDV K G+D
Sbjct: 373 KEDFVR---ATLQAVAYQSKDVIDTMKKDSGID 402
>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
pdb|3D7E|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
Length = 505
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 20/180 (11%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSV--CLAIRD 60
Y++++D GT+S RA + GK + + + PK E ++ +IWNSV +A
Sbjct: 5 YVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAF 64
Query: 61 VTKDVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEADQ 117
+ + P I G+G+ TN + T+ TG N ++W ++ ADQ
Sbjct: 65 IESGIRPEAIAGIGI----------TNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQ 114
Query: 118 INATKHSVL--DTVGGKISPEMETPKLLWLKKNLPDTCWRRAG---LFFDLPDFLTWKLT 172
+ H+ + + G I K+ WL N+ + LF + +L WKLT
Sbjct: 115 LKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT 174
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 458 HSTELTA------DFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQAL 511
S EL A + +V P F G +P D + +G + GLT +++ V AT+QA+
Sbjct: 328 QSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVR---ATLQAV 384
Query: 512 AYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNV 558
AY ++ ++D M I L V GG AKN L +Q AD+ +V
Sbjct: 385 AYQSKDVIDTMKKDSGID-IPLLKVDGGAAKNDLLMQFQADILDIDV 430
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 352 IQYLN---HVIDTQ-HSTELTA------DFHVWPDFHGNRSPLADADMKGMICGLTLDSS 401
IQ+L +I+T S EL A + +V P F G +P D++ +G + GLT ++
Sbjct: 313 IQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTT 372
Query: 402 ETSLVTLYLATIQALADVTKDVNPAQIKGVGVD 434
+ V AT+QA+A +KDV K G+D
Sbjct: 373 KEDFVR---ATLQAVAYQSKDVIDTMKKDSGID 402
>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2ITM|B Chain B, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2NLX|A Chain A, Crystal Structure Of The Apo E. Coli Xylulose Kinase
pdb|2NLX|B Chain B, Crystal Structure Of The Apo E. Coli Xylulose Kinase
Length = 484
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 96/439 (21%), Positives = 155/439 (35%), Gaps = 69/439 (15%)
Query: 5 LSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKD 64
+ +D+GTS V+ L++ +G+V + + P P EQ E W + A++ +
Sbjct: 3 IGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQ 62
Query: 65 VNPAQIKGVGVDATC-SLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINATKH 123
+ +K +G+ LD + L R +LW D R E + A
Sbjct: 63 HSLQDVKALGIAGQMHGATLLDAQQRVL---------RPAILWNDGRCAQECTLLEARVP 113
Query: 124 SVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQSLCSLV 183
G + P PKLLW++++ P+ +R+ D+L ++TG+ +
Sbjct: 114 QSRVITGNLMMPGFTAPKLLWVQRHEPE-IFRQIDKVLLPKDYLRLRMTGEFASDMSDAA 172
Query: 184 CKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVARALGLNP 243
D R W++ + DL ++ A+ G I + EVA+A G+
Sbjct: 173 GTMWLDVAKRDWSDVMLQAC---DLSRDQMPALYE-----GSEITGALLPEVAKAWGMAT 224
Query: 244 GTPVS------------VSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALS 291
PV V M+DA+ L+L GTS + A+S
Sbjct: 225 -VPVVAGGGDNAAGAVGVGMVDANQAMLSL--------------------GTSGVYFAVS 263
Query: 292 AKKVQVPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPV 351
+ P + LP L S + LD KL P
Sbjct: 264 EGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWA-----------AKLTGLSNVPA 312
Query: 352 IQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLA 411
+ + Q + E P G R+P + KG+ GLT L L
Sbjct: 313 L-----IAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLE 367
Query: 412 TI-QALADVTKDVNPAQIK 429
+ ALAD V+ IK
Sbjct: 368 GVGYALADGMDVVHACGIK 386
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 468 VW--PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAA 525
VW P G R+P + KG+ GLT L A ++ + Y MD +HA
Sbjct: 327 VWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELAR---AVLEGVGYALADGMDVVHAC 383
Query: 526 GKTPAISTLLVSGGLAKNPLYVQTHADVTG 555
G P TL+ GG A++ + Q AD++G
Sbjct: 384 GIKPQSVTLI--GGGARSEYWRQMLADISG 411
>pdb|3HZ6|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
pdb|3KZB|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
Length = 511
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 119/285 (41%), Gaps = 35/285 (12%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIAL--WCPKPQLYEQSSEDIWNSVC-LAIR 59
Y+ + D+GT+ V+AAL G + R IAL + EQ + D +++V +A
Sbjct: 6 YIATFDIGTTEVKAALADRDGGLH--FQRSIALETYGDGNGPVEQDAGDWYDAVQRIASS 63
Query: 60 DVTKDVNPAQIKGVGVDATC-SLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQI 118
V+ ++ + + + + LD +H+PL +L+ D R + EA++I
Sbjct: 64 WWQSGVDARRVSAIVLSGQXQNFLPLDQDHEPL---------HRAVLYSDKRPLKEAEEI 114
Query: 119 NATKHSVLDTVGGKISPEMET---PKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDE 175
NA +H + +P PKL++ + + P R + D++ +LTG
Sbjct: 115 NA-RHGADNLWSALENPXTAASILPKLVFWRASFPQAFGRLRHVVLGAKDYVVLRLTGRH 173
Query: 176 TQSLCSLVCKWTYDAYDRRWNEDYFEKIGLG-DLKQNGWRAIGNTVKNPGQPIGHGVSTE 234
+ Y D W+ + G DL + PG+ +G GVS
Sbjct: 174 ATDRTNASTTGLYRPKDDAWHVELLADYGFSLDLXPR--------LLEPGEQVG-GVSAL 224
Query: 235 VARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGL 279
AR G GTPV + DA A L + G+ +D D+ L L
Sbjct: 225 AARQTGFVSGTPVLCGLGDAGAATLGV------GVLDDEDAYLHL 263
>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
pdb|2D4W|B Chain B, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
Length = 504
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 101/470 (21%), Positives = 171/470 (36%), Gaps = 101/470 (21%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61
+Y+L++D GT+S RA + G++ P+ E + E IWN+V R+V
Sbjct: 2 DYVLAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNV----REV 57
Query: 62 TKDVNPAQIKGVGVDATCSLVALDTNHQPLTI--SPTGDDSRNVLLWMDHRAVSEADQIN 119
V A +G + V + + + TG N ++W D R D++
Sbjct: 58 ---VGLALTRGNLTHEDIAAVGITNQRETAVVWDKTTGKPVYNAIVWQDTRTQKIVDELG 114
Query: 120 ATK--HSVLDTVGGKISPEMETPKLLWLKKNLPDTCWR--RAGLFFDLPD-FLTWKLTG- 173
+ VG ++ PK+ W+ N+ + + L F D ++ W +TG
Sbjct: 115 GDEGAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDTWVLWNMTGG 174
Query: 174 --------DETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQ 225
D T + +++ D W ED +G+ ++ +++ +
Sbjct: 175 TEGGVHVTDVTNASRTMLM----DLDTLSWREDIAADMGIP-------LSMLPDIRSSSE 223
Query: 226 PIGHGVSTEVARALGLNPGTPVSVSMIDAHA-------------------GALALLATSA 266
GHG R GL PG P++ + D A G LL T
Sbjct: 224 VYGHG------RPRGLVPGVPIAGILGDQQAATFGQACFEVGQAKNTYGTGNFLLLNTGT 277
Query: 267 PGIPEDIDSKLGLICGTSTCHMALSAKKVQVPGVWGPYYEVILPNTHLLESGQSATGKLL 326
E + SK GL+ T+ C+ A P + LE + TG L+
Sbjct: 278 ----EKVMSKNGLL--TTVCYKIGDA-----------------PAVYALEGSIAVTGSLV 314
Query: 327 DHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLAD 386
+ +N L E AP +++L + P F G +P
Sbjct: 315 QWLRDN----------LGMFEDAPDVEWLAGKVQDNGGAYFV------PAFSGLFAPYWR 358
Query: 387 ADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDAT 436
D +G + GLT + + A ++A A +++V A GVD T
Sbjct: 359 PDARGALVGLTRYVNRNHIAR---AALEATAFQSREVVDAMNADSGVDLT 405
>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|B Chain B, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|E Chain E, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|G Chain G, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|C Chain C, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|D Chain D, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|F Chain F, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|H Chain H, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
Length = 526
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 463 TADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAM 522
T +V P F G +P D +G I GLT + ++ AT++++AY TR +++AM
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIR---ATLESIAYQTRDVLEAM 395
Query: 523 HAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
A + L V GG N +Q +D+ G V P+
Sbjct: 396 QADSGI-RLHALRVDGGAVANNFLMQFQSDILGTRVERPE 434
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 20/181 (11%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61
+Y++++D GT+S RA ++ + ++ R PKP E +IW + + +V
Sbjct: 4 KYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEV 63
Query: 62 --TKDVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRA--VSE 114
D++ QI +G+ TN + TI TG N ++W R + E
Sbjct: 64 LAKADISSDQIAAIGI----------TNQRETTIVWEKETGKPIYNAIVWQCRRTAEICE 113
Query: 115 ADQINATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCW--RRAGLFFDLPD-FLTWKL 171
+ + + + G I P K+ W+ ++ + RR L F D +L WK+
Sbjct: 114 HLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKM 173
Query: 172 T 172
T
Sbjct: 174 T 174
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 339 IMKKLNTEELAPVIQYLNHVIDTQH---STELTADFHVWPDFHGNRSPLADADMKGMICG 395
M + + L ++ +N D+++ + T +V P F G +P D +G I G
Sbjct: 307 FMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFG 366
Query: 396 LTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGV 433
LT + ++ AT++++A T+DV A G+
Sbjct: 367 LTRGVNANHIIR---ATLESIAYQTRDVLEAMQADSGI 401
>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 463 TADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAM 522
T +V P F G +P D +G I GLT + ++ AT++++AY TR +++AM
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIR---ATLESIAYQTRDVLEAM 395
Query: 523 HAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
A + L V GG N +Q +D+ G V P+
Sbjct: 396 QADSGIR-LHALRVDGGAVANNFLMQFQSDILGTRVERPE 434
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 20/181 (11%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61
+Y++++D GT+S RA ++ + ++ R PKP E +IW + + +V
Sbjct: 4 KYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSWTLVEV 63
Query: 62 --TKDVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRA--VSE 114
D++ QI +G+ TN + TI TG N ++W R + E
Sbjct: 64 LAKADISSDQIAAIGI----------TNQRETTIVWEKETGKPIYNAIVWQCRRTAEICE 113
Query: 115 ADQINATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCW--RRAGLFFDLPD-FLTWKL 171
+ + + + G I P K+ W+ ++ + RR L F D +L WK+
Sbjct: 114 HLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKM 173
Query: 172 T 172
T
Sbjct: 174 T 174
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 339 IMKKLNTEELAPVIQYLNHVIDTQH---STELTADFHVWPDFHGNRSPLADADMKGMICG 395
M + + L ++ +N D+++ + T +V P F G +P D +G I G
Sbjct: 307 FMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFG 366
Query: 396 LTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGV 433
LT + ++ AT++++A T+DV A G+
Sbjct: 367 LTRGVNANHIIR---ATLESIAYQTRDVLEAMQADSGI 401
>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLB|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLC|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLD|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLE|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate
Length = 501
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 463 TADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAM 522
T +V P F G +P D +G I GLT + ++ AT++++AY TR +++AM
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIR---ATLESIAYQTRDVLEAM 395
Query: 523 HAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
A + L V GG N +Q +D+ G V P+
Sbjct: 396 QADSGIR-LHALRVDGGAVANNFLMQFQSDILGTRVERPE 434
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 20/181 (11%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61
+Y++++D GT+S RA ++ + ++ R PKP E +IW + + +V
Sbjct: 4 KYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEV 63
Query: 62 --TKDVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRA--VSE 114
D++ QI +G+ TN + TI TG N ++W R + E
Sbjct: 64 LAKADISSDQIAAIGI----------TNQRETTIVWEKETGKPIYNAIVWQCRRTAEICE 113
Query: 115 ADQINATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCW--RRAGLFFDLPD-FLTWKL 171
+ + + + G I P K+ W+ ++ + RR L F D +L WK+
Sbjct: 114 HLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKM 173
Query: 172 T 172
T
Sbjct: 174 T 174
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 339 IMKKLNTEELAPVIQYLNHVIDTQH---STELTADFHVWPDFHGNRSPLADADMKGMICG 395
M + + L ++ +N D+++ + T +V P F G +P D +G I G
Sbjct: 307 FMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFG 366
Query: 396 LTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGV 433
LT + ++ AT++++A T+DV A G+
Sbjct: 367 LTRGVNANHIIR---ATLESIAYQTRDVLEAMQADSGI 401
>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 463 TADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAM 522
T +V P F G +P D +G I GLT + ++ AT++++AY TR +++AM
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIR---ATLESIAYQTRDVLEAM 395
Query: 523 HAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
A + L V GG N +Q +D+ G V P+
Sbjct: 396 QADSGIR-LHALRVDGGAVANNFLMQFQSDILGTRVERPE 434
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 20/181 (11%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61
+Y++++D GT+S RA ++ + ++ R PKP E +IW + + +V
Sbjct: 4 KYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEV 63
Query: 62 --TKDVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRA--VSE 114
D++ QI +G+ TN + TI TG N ++W R + E
Sbjct: 64 LTKADISSDQIAAIGI----------TNQRETTIVWEKETGKPIYNAIVWQCRRTAEICE 113
Query: 115 ADQINATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCW--RRAGLFFDLPD-FLTWKL 171
+ + + + G I P K+ W+ ++ + RR L F D +L WK+
Sbjct: 114 HLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKM 173
Query: 172 T 172
T
Sbjct: 174 T 174
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 339 IMKKLNTEELAPVIQYLNHVIDTQH---STELTADFHVWPDFHGNRSPLADADMKGMICG 395
M + + L ++ +N D+++ + T +V P F G +P D +G I G
Sbjct: 307 FMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFG 366
Query: 396 LTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGV 433
LT + ++ AT++++A T+DV A G+
Sbjct: 367 LTRGVNANHIIR---ATLESIAYQTRDVLEAMQADSGI 401
>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus
Acidophilus
pdb|3LL3|A Chain A, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
pdb|3LL3|B Chain B, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
Length = 504
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 88/452 (19%), Positives = 173/452 (38%), Gaps = 48/452 (10%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRD 60
++Y++ DVGT++ + L GK + L K E+ + I+++V I D
Sbjct: 3 LKYIIGXDVGTTATKGVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFD 62
Query: 61 VTKDVNPAQIKGVGVDATC-SLVALDTNHQPLTISPTGDDSRNVLLWMDH--RAVSEADQ 117
+T+ ++ +I + + SL+ L ++ + LT N + W D+ +++ + +
Sbjct: 63 LTQKID-GKIAAISWSSQXHSLIGLGSDDELLT---------NSITWADNCAKSIVQDAK 112
Query: 118 INATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQ 177
+ G P KLLWL KN + +A + + +++ ++LTG
Sbjct: 113 NRGFAQQIYRKTGXPXHPXAPIYKLLWL-KNKKTEVFSQAQKWIGIKEYIIFRLTGKLVT 171
Query: 178 SLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVAR 237
+ W+++ + + +K+ I K + + TE +
Sbjct: 172 DTTXAAGTGILNLKTLTWDQELLDIL---KIKKEQLPKIAQPTK-----VIFPIKTEYVK 223
Query: 238 ALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSK-LGLICGTSTCHMALSAKKVQ 296
LG++ T + ++ A G L+ + +A IDS L GTS + +
Sbjct: 224 KLGIDSDTKI---ILGASDGYLSTIGVNA------IDSDHCALNVGTSGAIRTIVDQPKI 274
Query: 297 VPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLN 356
P Y+ TH L G G ++ + A Q++ T + +
Sbjct: 275 DPS--ASYFCYPADKTHYLLGGPVNNGGIVFNW-----ARQTLFDADETPQ--------D 319
Query: 357 HVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYL-ATIQA 415
+ Q + + + P G R+P+ DA+ +G GLT + + I
Sbjct: 320 FLDVAQTAPAGSRNLIFLPYLGGERAPIWDANARGSFVGLTRXHQKPEXARAVIEGIIFN 379
Query: 416 LADVTKDVNPAQIKGVGVDATCSLVALDTNHQ 447
L D ++ K V ++AT + D Q
Sbjct: 380 LYDAASNLIKNTKKPVAINATGGFLKSDFVRQ 411
>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
pdb|3IFR|B Chain B, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
Length = 508
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 97/425 (22%), Positives = 160/425 (37%), Gaps = 60/425 (14%)
Query: 4 LLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTK 63
++ +D+GT+S A LV V +A RP L P P E+ W++ + ++
Sbjct: 9 VIGLDIGTTSTIAILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKT 68
Query: 64 DVNPAQIKGVGVDATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT-- 121
+ + G+ T L A+ + + G R + D R E ++ A
Sbjct: 69 TAGESDWRPGGICVTGXLPAV------VLLDDRGAVLRPSIQQSDGRCGDEVAELRAEVD 122
Query: 122 KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQSLCS 181
+ L G ++ ++ T KL W++++ P A + D++ LTG+
Sbjct: 123 SEAFLARTGNGVTQQLVTAKLRWIERHEPAVFGAIATVCGSY-DYINXLLTGERV----- 176
Query: 182 LVCKWTYDAYDRRWN-EDYFEKIGLGDLKQN--GWRAIGNTVKNPGQP---IGHGVSTEV 235
DR W E F + G ++ + I + P P + V+ E
Sbjct: 177 ---------VDRNWALEGGFIDLASGTVEADLVALAHIPPSAVPPAHPTHRVLGAVTAEA 227
Query: 236 ARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKV 295
A GL G PV D A ALA T P D+ K G G +A SA
Sbjct: 228 AALTGLPTGLPVYGGAADHIASALAAGITR----PGDVLLKFG---GAGDIIVA-SATAK 279
Query: 296 QVPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYL 355
P ++ Y+ ++P + +ATG L+ + KL LAP
Sbjct: 280 SDPRLYLDYH--LVPGLYAPNGCXAATGSALNW-----------LAKL----LAPEAGEA 322
Query: 356 NHVIDTQHSTELTA---DFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLAT 412
H + E+ A P F G ++P+ D G GL+L + L+ A
Sbjct: 323 AHAQLDALAAEVPAGADGLVCLPYFLGEKTPIHDPFASGTFTGLSLSHTRGH---LWRAL 379
Query: 413 IQALA 417
++A+A
Sbjct: 380 LEAVA 384
>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
pdb|2W41|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
Length = 507
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 454 TDTRHSTELTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAY 513
+D E T P F G +P D + I G+T ++ + +V A ++ +A+
Sbjct: 338 SDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVR---ALLEGIAF 394
Query: 514 GTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQEK 564
I+D++ + + L GG+ KN ++Q ++D+ + + K
Sbjct: 395 QLNEIVDSLTSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYK 445
>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|C Chain C, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|D Chain D, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
Length = 503
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 454 TDTRHSTELTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAY 513
+D E T P F G +P D + I G+T ++ + +V A ++ +A+
Sbjct: 334 SDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVR---ALLEGIAF 390
Query: 514 GTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQEK 564
I+D++ + + L GG+ KN ++Q ++D+ + + K
Sbjct: 391 QLNEIVDSLTSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYK 441
>pdb|3URB|A Chain A, Crystal Structure Of Pte Mutant
H254gH257WL303TM317LI106CF132IL271IK185RI274NA80VR67H
pdb|3URB|B Chain B, Crystal Structure Of Pte Mutant
H254gH257WL303TM317LI106CF132IL271IK185RI274NA80VR67H
pdb|3URQ|A Chain A, Crystal Structure Of Pte Mutant
H254gH257WL303TM317LI106CF132IL271IK185RI274NA80VR67H
WITH Cyclohexyl Methylphosphonate Inhibitor
pdb|3URQ|B Chain B, Crystal Structure Of Pte Mutant
H254gH257WL303TM317LI106CF132IL271IK185RI274NA80VR67H
WITH Cyclohexyl Methylphosphonate Inhibitor
Length = 327
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 342 KLNTEELAPVIQYLNHVIDTQHSTELTADF-HVWPDFHGNRSPLADADMKGM 392
++NT I + +H +A F H WP+F G+R L + ++G+
Sbjct: 2 RINTVRGPITISEAGFTLTHEHICGSSAGFLHAWPEFFGSRKALVEKAVRGL 53
>pdb|2E7W|A Chain A, Crystal Structure Of The LrpASNC LIKE TRANSCRIPTIONAL
REGULATORS FROM Sulfolobus Tokodaii 7
pdb|2E7X|A Chain A, Structure Of The LrpASNC LIKE TRANSCRIPTIONAL REGULATOR
FROM Sulfolobus Tokodaii 7 Complexed With Its Cognate
Ligand
Length = 150
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 287 HMALSAKKVQVPGVWGPYY 305
H+ L K Q+PGVWG Y+
Sbjct: 78 HVELGNKLAQIPGVWGVYF 96
>pdb|2YX7|A Chain A, Crystals Structure Of T132a Mutant Of St1022 From
Sulfolobus Tokodaii 7
pdb|2PMH|A Chain A, Crystal Structure Of Thr132ala Of St1022 From Sulfolobus
Tokodaii
Length = 150
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 287 HMALSAKKVQVPGVWGPYY 305
H+ L K Q+PGVWG Y+
Sbjct: 78 HVELGNKLAQIPGVWGVYF 96
>pdb|2EFQ|A Chain A, Crystal Structure Of Thr134 To Ala Of St1022-Glutamine
Complex From Sulfolobus Tokodaii 7
pdb|2YX4|A Chain A, Crystal Structure Of T134a Of St1022 From Sulfolobus
Tokodaii
Length = 150
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 287 HMALSAKKVQVPGVWGPYY 305
H+ L K Q+PGVWG Y+
Sbjct: 78 HVELGNKLAQIPGVWGVYF 96
>pdb|2EFO|A Chain A, Crystal Structure Of Tyr77 To Ala Of St1022 From
Sulfolobus Tokodaii 7
pdb|2EFP|A Chain A, Crystal Structure Of Tyr77 To Ala Of St1022-Glutamine
Complex From Sulolobus Tokodaii 7
Length = 150
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 287 HMALSAKKVQVPGVWGPYY 305
H+ L K Q+PGVWG Y+
Sbjct: 78 HVELGNKLAQIPGVWGVYF 96
>pdb|2EFN|A Chain A, Crystal Structure Of Ser 32 To Ala Of St1022 From
Sulfolobus Tokodaii 7
pdb|2PN6|A Chain A, Crystal Structure Of S32a Of St1022-Gln Complex From
Sulfolobus Tokodaii
Length = 150
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 287 HMALSAKKVQVPGVWGPYY 305
H+ L K Q+PGVWG Y+
Sbjct: 78 HVELGNKLAQIPGVWGVYF 96
>pdb|3I8B|A Chain A, The Crystal Structure Of Xylulose Kinase From
Bifidobacterium Adolescentis
Length = 515
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 21/119 (17%)
Query: 74 GVDATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEA------------------ 115
G+D +L H + + G+ R+ LW D + +A
Sbjct: 61 GLDDVSALAVGGQQHGXVILDNQGNVIRDAXLWNDTSSAPQAAALIEKLGAAPAQDGEPE 120
Query: 116 DQINATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLP-DFLTWKLTG 173
D I K + VG K+ W+ +N P+ + A + LP D+L+W++ G
Sbjct: 121 DPIARGKQRWVKAVGSSPVASYTLTKVAWVAENEPENVKKIAAIC--LPHDWLSWRIAG 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,442,271
Number of Sequences: 62578
Number of extensions: 742399
Number of successful extensions: 1827
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1712
Number of HSP's gapped (non-prelim): 71
length of query: 564
length of database: 14,973,337
effective HSP length: 104
effective length of query: 460
effective length of database: 8,465,225
effective search space: 3894003500
effective search space used: 3894003500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)