Query psy10531
Match_columns 564
No_of_seqs 268 out of 1720
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 20:41:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01315 5C_CHO_kinase FGGY-f 100.0 8.3E-83 1.8E-87 704.4 40.8 464 3-563 1-476 (541)
2 PRK15027 xylulokinase; Provisi 100.0 5.8E-82 1.3E-86 690.1 41.7 416 3-561 1-417 (484)
3 TIGR01314 gntK_FGGY gluconate 100.0 1.9E-80 4.1E-85 681.6 43.6 428 3-563 1-434 (505)
4 PRK04123 ribulokinase; Provisi 100.0 8.3E-79 1.8E-83 674.9 42.8 441 1-563 2-472 (548)
5 PRK00047 glpK glycerol kinase; 100.0 8.6E-79 1.9E-83 667.3 40.3 415 2-562 5-435 (498)
6 TIGR01234 L-ribulokinase L-rib 100.0 1.5E-78 3.4E-83 670.4 42.3 430 3-562 2-468 (536)
7 PLN02295 glycerol kinase 100.0 1.4E-78 3.1E-83 667.1 38.6 412 3-563 1-445 (512)
8 PTZ00294 glycerol kinase-like 100.0 4.6E-78 9.9E-83 662.3 40.8 417 1-563 1-439 (504)
9 COG1070 XylB Sugar (pentulose 100.0 1.8E-77 3.8E-82 656.0 40.7 424 1-562 3-433 (502)
10 PRK10331 L-fuculokinase; Provi 100.0 2.7E-77 5.9E-82 651.0 41.7 412 2-563 2-422 (470)
11 PRK10939 autoinducer-2 (AI-2) 100.0 2E-77 4.3E-82 659.6 39.1 428 1-563 2-442 (520)
12 COG0554 GlpK Glycerol kinase [ 100.0 6.2E-77 1.3E-81 613.6 34.2 415 1-563 4-435 (499)
13 COG1069 AraB Ribulose kinase [ 100.0 1.5E-76 3.3E-81 619.0 35.7 459 1-563 2-464 (544)
14 TIGR01311 glycerol_kin glycero 100.0 6.1E-76 1.3E-80 644.0 40.4 413 2-562 1-431 (493)
15 TIGR02628 fuculo_kin_coli L-fu 100.0 1.6E-75 3.4E-80 636.2 41.1 416 2-563 1-426 (465)
16 TIGR01312 XylB D-xylulose kina 100.0 4.1E-75 8.8E-80 636.6 39.9 417 5-563 1-423 (481)
17 PLN02669 xylulokinase 100.0 1.6E-72 3.5E-77 621.6 38.9 427 2-563 8-478 (556)
18 TIGR02627 rhamnulo_kin rhamnul 100.0 1.9E-68 4E-73 579.2 31.4 401 5-562 1-419 (454)
19 PRK10640 rhaB rhamnulokinase; 100.0 3.3E-62 7.3E-67 531.4 29.8 389 17-563 3-408 (471)
20 KOG2517|consensus 100.0 1E-59 2.2E-64 497.2 33.5 414 2-563 6-447 (516)
21 PF00370 FGGY_N: FGGY family o 100.0 2.8E-51 6.1E-56 409.7 19.8 240 3-260 1-245 (245)
22 KOG2531|consensus 100.0 1.4E-39 3.1E-44 331.3 28.2 435 3-562 10-474 (545)
23 PF02782 FGGY_C: FGGY family o 100.0 5.6E-28 1.2E-32 233.4 16.3 179 277-563 1-182 (198)
24 COG1069 AraB Ribulose kinase [ 99.0 1.5E-09 3.3E-14 115.6 9.3 103 351-456 351-466 (544)
25 KOG2517|consensus 98.9 2.6E-09 5.6E-14 114.6 9.3 83 369-452 352-445 (516)
26 TIGR01315 5C_CHO_kinase FGGY-f 98.7 3.4E-08 7.3E-13 110.1 9.6 83 369-453 379-475 (541)
27 PF02782 FGGY_C: FGGY family o 98.7 2.5E-08 5.5E-13 96.1 6.5 84 369-453 87-181 (198)
28 PRK00047 glpK glycerol kinase; 98.6 5E-08 1.1E-12 107.7 7.8 83 369-452 341-434 (498)
29 PRK04123 ribulokinase; Provisi 98.6 5.3E-08 1.1E-12 108.8 8.1 86 369-456 377-475 (548)
30 TIGR01311 glycerol_kin glycero 98.6 6.6E-08 1.4E-12 106.6 7.8 83 369-452 337-430 (493)
31 PLN02295 glycerol kinase 98.6 1.1E-07 2.4E-12 105.3 7.7 81 371-452 347-443 (512)
32 PTZ00294 glycerol kinase-like 98.5 1.7E-07 3.8E-12 103.5 7.9 81 371-452 346-437 (504)
33 PRK15027 xylulokinase; Provisi 98.5 1.7E-07 3.8E-12 103.0 7.7 82 369-452 325-417 (484)
34 TIGR01314 gntK_FGGY gluconate 98.5 2.1E-07 4.6E-12 102.9 7.7 83 369-452 339-432 (505)
35 TIGR01234 L-ribulokinase L-rib 98.5 2.4E-07 5.3E-12 103.2 7.5 82 369-452 374-467 (536)
36 COG1070 XylB Sugar (pentulose 98.5 4.4E-07 9.5E-12 100.2 9.0 102 369-475 339-452 (502)
37 TIGR00241 CoA_E_activ CoA-subs 98.4 2.9E-07 6.3E-12 92.3 6.4 60 494-563 176-236 (248)
38 TIGR01312 XylB D-xylulose kina 98.3 8.7E-07 1.9E-11 97.4 7.7 84 369-453 328-422 (481)
39 COG0554 GlpK Glycerol kinase [ 98.0 1.1E-05 2.4E-10 85.4 7.3 83 370-453 341-434 (499)
40 TIGR02259 benz_CoA_red_A benzo 98.0 6.2E-05 1.3E-09 78.6 12.6 62 494-563 353-419 (432)
41 TIGR02627 rhamnulo_kin rhamnul 98.0 5E-06 1.1E-10 90.8 4.6 75 378-453 327-419 (454)
42 PRK10640 rhaB rhamnulokinase; 97.9 4.7E-06 1E-10 91.4 3.0 75 378-455 317-409 (471)
43 PRK10939 autoinducer-2 (AI-2) 97.9 2E-05 4.3E-10 87.6 7.1 79 374-453 349-441 (520)
44 PRK10331 L-fuculokinase; Provi 97.7 5.6E-05 1.2E-09 83.0 7.0 75 369-452 335-420 (470)
45 COG1940 NagC Transcriptional r 97.6 0.00026 5.6E-09 73.4 9.8 76 1-87 5-81 (314)
46 smart00732 YqgFc Likely ribonu 97.2 0.00025 5.3E-09 60.2 3.2 57 3-76 2-58 (99)
47 TIGR00241 CoA_E_activ CoA-subs 97.2 0.00053 1.2E-08 68.7 5.3 66 3-83 1-69 (248)
48 TIGR02628 fuculo_kin_coli L-fu 97.1 0.00074 1.6E-08 74.1 6.3 66 386-452 348-424 (465)
49 PRK13311 N-acetyl-D-glucosamin 97.0 0.0049 1.1E-07 62.0 10.6 63 3-76 1-63 (256)
50 PRK09698 D-allose kinase; Prov 97.0 0.0059 1.3E-07 62.9 11.2 73 2-87 4-76 (302)
51 COG2971 Predicted N-acetylgluc 96.9 0.0026 5.6E-08 64.4 7.5 67 1-74 4-73 (301)
52 PRK09557 fructokinase; Reviewe 96.9 0.0063 1.4E-07 62.7 10.7 75 3-91 1-76 (301)
53 PF00480 ROK: ROK family; Int 96.9 0.0051 1.1E-07 58.1 9.0 86 6-115 1-87 (179)
54 PRK13310 N-acetyl-D-glucosamin 96.8 0.007 1.5E-07 62.4 10.2 63 3-76 1-63 (303)
55 TIGR00744 ROK_glcA_fam ROK fam 96.7 0.011 2.3E-07 61.3 10.8 63 5-77 1-65 (318)
56 PRK00292 glk glucokinase; Prov 96.7 0.0047 1E-07 64.1 7.9 33 1-33 1-34 (316)
57 TIGR03192 benz_CoA_bzdQ benzoy 96.7 0.0065 1.4E-07 61.8 8.5 58 494-560 212-269 (293)
58 PLN02669 xylulokinase 96.4 0.0071 1.5E-07 67.8 7.6 82 369-452 372-476 (556)
59 PRK13321 pantothenate kinase; 96.4 0.011 2.3E-07 59.6 8.0 63 4-77 2-64 (256)
60 PF01869 BcrAD_BadFG: BadF/Bad 96.3 0.0084 1.8E-07 60.8 7.0 65 5-75 1-67 (271)
61 PF14574 DUF4445: Domain of un 96.3 0.011 2.4E-07 63.2 7.9 76 2-77 1-91 (412)
62 PF05378 Hydant_A_N: Hydantoin 96.2 0.0055 1.2E-07 58.2 4.5 75 5-91 2-79 (176)
63 PRK13318 pantothenate kinase; 96.2 0.021 4.5E-07 57.6 8.7 62 4-76 2-63 (258)
64 TIGR03286 methan_mark_15 putat 96.2 0.018 3.8E-07 61.1 8.3 61 495-563 328-388 (404)
65 TIGR02261 benz_CoA_red_D benzo 96.1 0.02 4.4E-07 57.5 7.9 54 494-555 183-236 (262)
66 PRK05082 N-acetylmannosamine k 95.8 0.064 1.4E-06 54.9 10.7 63 1-77 1-63 (291)
67 PRK12408 glucokinase; Provisio 95.3 0.021 4.5E-07 60.0 4.9 22 3-24 17-38 (336)
68 PRK14101 bifunctional glucokin 95.3 0.027 5.9E-07 64.3 6.1 31 3-33 19-49 (638)
69 PF00349 Hexokinase_1: Hexokin 94.7 0.11 2.4E-06 50.5 7.8 71 3-76 64-138 (206)
70 COG1924 Activator of 2-hydroxy 94.7 0.11 2.4E-06 54.1 8.0 62 494-563 314-375 (396)
71 PRK13317 pantothenate kinase; 94.6 0.71 1.5E-05 47.1 13.7 77 481-563 174-259 (277)
72 smart00842 FtsA Cell division 93.3 0.56 1.2E-05 44.7 9.5 71 4-78 1-77 (187)
73 KOG1794|consensus 91.7 0.85 1.8E-05 46.1 8.5 69 1-75 2-73 (336)
74 PRK13317 pantothenate kinase; 91.7 0.2 4.4E-06 51.0 4.3 29 1-29 1-29 (277)
75 COG1924 Activator of 2-hydroxy 91.5 1.1 2.5E-05 46.9 9.5 36 312-362 254-289 (396)
76 TIGR03192 benz_CoA_bzdQ benzoy 91.3 0.48 1E-05 48.4 6.5 62 3-78 33-96 (293)
77 TIGR02707 butyr_kinase butyrat 91.3 0.43 9.4E-06 50.3 6.4 28 4-31 2-29 (351)
78 PRK15080 ethanolamine utilizat 91.0 1.1 2.3E-05 45.5 8.8 52 504-562 202-253 (267)
79 TIGR01174 ftsA cell division p 90.9 1.1 2.3E-05 47.7 9.1 71 4-78 2-78 (371)
80 PTZ00288 glucokinase 1; Provis 90.9 1.4 3.1E-05 47.3 9.9 55 2-63 26-83 (405)
81 TIGR03123 one_C_unchar_1 proba 90.8 0.53 1.1E-05 48.8 6.3 31 5-35 1-31 (318)
82 PRK09472 ftsA cell division pr 90.4 1.7 3.7E-05 47.0 10.3 72 3-78 9-86 (420)
83 PF11104 PilM_2: Type IV pilus 90.3 0.59 1.3E-05 49.1 6.4 57 504-562 248-306 (340)
84 PRK13320 pantothenate kinase; 89.7 1.2 2.6E-05 44.5 7.7 28 1-29 1-28 (244)
85 TIGR00749 glk glucokinase, pro 89.4 0.66 1.4E-05 48.1 5.9 25 5-29 1-25 (316)
86 PF03702 UPF0075: Uncharacteri 88.8 1.1 2.3E-05 47.5 6.9 58 496-561 258-316 (364)
87 PF13941 MutL: MutL protein 88.7 1.6 3.4E-05 47.6 8.2 49 4-62 2-53 (457)
88 TIGR02529 EutJ ethanolamine ut 88.5 1.1 2.4E-05 44.6 6.6 52 504-562 175-226 (239)
89 PLN02914 hexokinase 88.5 1.1 2.4E-05 49.2 7.0 58 3-63 96-156 (490)
90 PRK09585 anmK anhydro-N-acetyl 88.0 1.1 2.4E-05 47.4 6.4 58 495-560 259-316 (365)
91 PLN02362 hexokinase 86.6 1.5 3.3E-05 48.5 6.7 57 3-62 96-155 (509)
92 COG2377 Predicted molecular ch 86.2 2.4 5.3E-05 44.3 7.5 56 496-559 264-320 (371)
93 COG0145 HyuA N-methylhydantoin 86.0 1.8 3.9E-05 49.5 7.2 34 1-34 1-34 (674)
94 PRK13326 pantothenate kinase; 85.8 3.1 6.7E-05 42.1 8.0 42 495-542 186-228 (262)
95 TIGR03286 methan_mark_15 putat 85.7 2 4.4E-05 45.8 6.9 21 313-333 267-287 (404)
96 TIGR00555 panK_eukar pantothen 85.3 17 0.00037 37.1 13.1 69 481-555 181-256 (279)
97 COG4820 EutJ Ethanolamine util 85.1 2.3 5.1E-05 40.8 6.2 29 2-30 29-57 (277)
98 PRK15080 ethanolamine utilizat 84.9 2.4 5.2E-05 42.9 6.8 57 2-61 24-80 (267)
99 PLN02596 hexokinase-like 84.8 1.9 4.1E-05 47.4 6.3 58 3-63 97-157 (490)
100 PF11104 PilM_2: Type IV pilus 84.5 4.2 9.1E-05 42.6 8.6 47 403-450 253-303 (340)
101 PLN02405 hexokinase 84.3 2.1 4.6E-05 47.2 6.4 57 3-62 96-155 (497)
102 PTZ00107 hexokinase; Provision 84.2 3.1 6.6E-05 45.6 7.6 61 3-63 75-142 (464)
103 PRK13324 pantothenate kinase; 84.1 4.7 0.0001 40.6 8.4 63 4-76 2-64 (258)
104 TIGR00555 panK_eukar pantothen 83.1 5.3 0.00012 40.7 8.3 26 4-29 2-27 (279)
105 PRK03011 butyrate kinase; Prov 83.1 2.7 5.8E-05 44.5 6.4 50 504-555 270-320 (358)
106 TIGR02529 EutJ ethanolamine ut 82.9 2.3 5E-05 42.3 5.6 52 6-60 1-52 (239)
107 COG0849 ftsA Cell division ATP 82.8 7.2 0.00016 42.1 9.5 72 3-77 7-83 (418)
108 TIGR01175 pilM type IV pilus a 82.6 7.7 0.00017 40.6 9.7 56 504-561 256-313 (348)
109 TIGR00671 baf pantothenate kin 80.7 6.1 0.00013 39.5 7.7 43 495-543 176-219 (243)
110 CHL00094 dnaK heat shock prote 80.6 4 8.6E-05 46.6 7.1 41 520-560 317-358 (621)
111 TIGR01175 pilM type IV pilus a 79.5 4.1 8.9E-05 42.6 6.4 72 3-78 4-78 (348)
112 PTZ00340 O-sialoglycoprotein e 79.5 8.8 0.00019 40.4 8.6 75 3-79 2-80 (345)
113 PLN02666 5-oxoprolinase 78.9 4.5 9.7E-05 49.7 7.1 81 2-90 9-98 (1275)
114 TIGR01174 ftsA cell division p 78.1 4 8.7E-05 43.3 5.8 63 496-562 281-346 (371)
115 PRK13410 molecular chaperone D 77.5 5 0.00011 46.2 6.7 61 496-559 296-357 (668)
116 PRK09472 ftsA cell division pr 77.5 7.1 0.00015 42.3 7.6 66 496-561 289-359 (420)
117 PRK13928 rod shape-determining 77.3 4.9 0.00011 42.0 6.1 66 496-562 240-307 (336)
118 PRK14878 UGMP family protein; 77.3 6.6 0.00014 40.9 7.0 61 496-562 213-276 (323)
119 COG4972 PilM Tfp pilus assembl 77.0 7.3 0.00016 40.3 6.9 58 504-561 261-318 (354)
120 PRK13331 pantothenate kinase; 76.8 6.4 0.00014 39.5 6.4 42 495-542 174-215 (251)
121 PRK09604 UGMP family protein; 76.2 11 0.00024 39.4 8.4 76 3-78 2-81 (332)
122 TIGR02261 benz_CoA_red_D benzo 74.9 7.1 0.00015 39.4 6.2 66 3-78 2-70 (262)
123 PRK10854 exopolyphosphatase; P 74.7 9.4 0.0002 42.5 7.8 73 2-77 11-91 (513)
124 PRK00976 hypothetical protein; 74.2 8.4 0.00018 40.0 6.6 60 3-78 2-62 (326)
125 PRK09604 UGMP family protein; 74.2 8.7 0.00019 40.2 7.0 61 496-562 226-289 (332)
126 COG5026 Hexokinase [Carbohydra 74.0 6.6 0.00014 42.1 5.9 57 3-62 76-134 (466)
127 TIGR00329 gcp_kae1 metallohydr 73.9 10 0.00022 39.2 7.3 61 496-562 230-293 (305)
128 PRK00290 dnaK molecular chaper 73.5 7.3 0.00016 44.5 6.7 63 495-560 293-356 (627)
129 PRK00290 dnaK molecular chaper 73.5 2.9 6.4E-05 47.7 3.5 23 1-24 1-23 (627)
130 TIGR03723 bact_gcp putative gl 73.2 9.9 0.00021 39.5 7.0 60 496-562 231-294 (314)
131 TIGR03706 exo_poly_only exopol 73.0 13 0.00029 38.2 8.0 69 4-75 2-78 (300)
132 CHL00094 dnaK heat shock prote 72.8 3.1 6.8E-05 47.4 3.5 24 423-446 329-354 (621)
133 COG3894 Uncharacterized metal- 72.7 5.1 0.00011 43.5 4.7 31 1-31 163-194 (614)
134 PRK09605 bifunctional UGMP fam 72.3 13 0.00028 41.6 8.2 74 3-78 2-78 (535)
135 TIGR01991 HscA Fe-S protein as 72.0 8.5 0.00018 43.7 6.7 63 494-559 278-341 (599)
136 PLN02920 pantothenate kinase 1 71.8 64 0.0014 34.5 12.5 53 495-553 268-321 (398)
137 PTZ00340 O-sialoglycoprotein e 71.7 11 0.00024 39.6 6.9 59 497-562 236-298 (345)
138 PRK05183 hscA chaperone protei 71.5 9.5 0.0002 43.5 7.0 61 496-559 296-357 (616)
139 PRK13929 rod-share determining 70.4 7.1 0.00015 40.9 5.3 31 531-561 278-309 (335)
140 COG3426 Butyrate kinase [Energ 70.3 15 0.00033 37.2 7.1 55 505-561 272-329 (358)
141 PF05035 DGOK: 2-keto-3-deoxy- 70.2 4.8 0.0001 41.2 3.8 28 8-35 1-28 (287)
142 PF07318 DUF1464: Protein of u 69.9 4.7 0.0001 42.1 3.7 56 6-78 1-56 (343)
143 COG4020 Uncharacterized protei 69.8 17 0.00037 36.2 7.2 25 2-26 3-27 (332)
144 PF00871 Acetate_kinase: Aceto 69.7 12 0.00027 40.0 7.0 48 506-555 297-346 (388)
145 PRK13410 molecular chaperone D 69.5 5.9 0.00013 45.6 4.8 23 423-445 329-353 (668)
146 COG3734 DgoK 2-keto-3-deoxy-ga 69.3 6.4 0.00014 39.9 4.3 31 2-32 5-35 (306)
147 COG0533 QRI7 Metal-dependent p 69.1 16 0.00035 38.1 7.3 61 495-562 232-296 (342)
148 TIGR02350 prok_dnaK chaperone 69.1 9.8 0.00021 43.2 6.4 63 495-560 291-354 (595)
149 PRK00039 ruvC Holliday junctio 68.8 28 0.00061 32.5 8.4 25 1-25 1-25 (164)
150 PF00012 HSP70: Hsp70 protein; 68.6 7 0.00015 44.2 5.1 62 496-560 296-358 (602)
151 PRK11031 guanosine pentaphosph 68.0 18 0.00038 40.2 8.0 73 2-77 6-86 (496)
152 PF03652 UPF0081: Uncharacteri 67.5 13 0.00029 33.5 5.7 23 3-25 2-24 (135)
153 PRK11678 putative chaperone; P 67.3 21 0.00047 39.0 8.3 64 492-561 366-431 (450)
154 TIGR03722 arch_KAE1 universal 66.4 17 0.00037 37.8 7.2 60 497-562 215-277 (322)
155 PRK13930 rod shape-determining 65.9 9.4 0.0002 39.7 5.1 67 496-562 245-312 (335)
156 PRK01433 hscA chaperone protei 65.4 17 0.00036 41.3 7.3 61 496-560 278-338 (595)
157 PF14450 FtsA: Cell division p 65.0 7.3 0.00016 34.2 3.5 56 4-61 1-59 (120)
158 PRK13411 molecular chaperone D 64.8 5.4 0.00012 45.8 3.2 24 1-25 1-24 (653)
159 PRK13927 rod shape-determining 64.5 11 0.00024 39.1 5.4 66 496-562 241-308 (334)
160 PTZ00400 DnaK-type molecular c 64.5 14 0.0003 42.6 6.5 63 494-559 333-396 (663)
161 PTZ00186 heat shock 70 kDa pre 64.0 14 0.00031 42.4 6.5 61 495-558 320-381 (657)
162 COG0443 DnaK Molecular chapero 63.8 7.8 0.00017 43.8 4.2 40 521-560 299-339 (579)
163 TIGR00329 gcp_kae1 metallohydr 62.9 27 0.00058 36.1 7.7 74 5-78 1-78 (305)
164 TIGR03723 bact_gcp putative gl 62.8 28 0.0006 36.1 7.9 75 4-78 1-79 (314)
165 COG1521 Pantothenate kinase ty 62.6 20 0.00043 36.0 6.3 44 494-542 181-224 (251)
166 TIGR00904 mreB cell shape dete 61.5 16 0.00034 38.1 5.8 30 533-562 282-311 (333)
167 TIGR03722 arch_KAE1 universal 61.4 23 0.00051 36.8 7.0 72 5-78 1-75 (322)
168 COG0248 GppA Exopolyphosphatas 59.0 22 0.00048 39.3 6.5 73 2-77 3-83 (492)
169 PRK09605 bifunctional UGMP fam 56.8 29 0.00063 38.8 7.2 59 497-562 218-280 (535)
170 TIGR03725 bact_YeaZ universal 56.0 22 0.00047 34.3 5.3 63 4-78 1-63 (202)
171 COG4972 PilM Tfp pilus assembl 55.9 45 0.00098 34.7 7.6 58 3-61 11-71 (354)
172 TIGR00143 hypF [NiFe] hydrogen 55.5 28 0.00061 40.4 6.9 62 495-562 629-693 (711)
173 PLN03184 chloroplast Hsp70; Pr 54.7 23 0.0005 40.9 6.1 39 521-559 355-394 (673)
174 PTZ00186 heat shock 70 kDa pre 54.4 13 0.00028 42.8 3.9 31 420-450 350-383 (657)
175 PRK01433 hscA chaperone protei 53.0 13 0.00028 42.3 3.6 23 423-445 309-333 (595)
176 PTZ00400 DnaK-type molecular c 52.3 13 0.00027 42.9 3.5 27 420-446 364-393 (663)
177 PRK11678 putative chaperone; P 52.1 11 0.00025 41.1 2.9 23 423-445 400-424 (450)
178 TIGR01319 glmL_fam conserved h 52.1 37 0.00079 37.1 6.6 29 7-35 1-30 (463)
179 COG0816 Predicted endonuclease 52.0 89 0.0019 28.5 8.2 23 1-23 1-23 (141)
180 KOG1369|consensus 51.6 25 0.00054 38.5 5.3 57 3-62 87-145 (474)
181 COG1548 Predicted transcriptio 50.8 37 0.0008 34.1 5.8 23 3-27 4-26 (330)
182 PF02075 RuvC: Crossover junct 49.9 48 0.001 30.4 6.3 61 4-75 1-64 (149)
183 COG1214 Inactive homolog of me 49.1 35 0.00075 33.5 5.6 68 3-81 2-71 (220)
184 COG5012 Predicted cobalamin bi 48.8 35 0.00075 33.5 5.3 50 506-557 163-213 (227)
185 COG0533 QRI7 Metal-dependent p 48.1 59 0.0013 34.1 7.1 79 3-82 2-84 (342)
186 PF03630 Fumble: Fumble ; Int 47.8 75 0.0016 33.5 8.1 50 495-551 258-309 (341)
187 PF00012 HSP70: Hsp70 protein; 47.2 15 0.00032 41.6 3.0 26 420-445 325-353 (602)
188 TIGR02350 prok_dnaK chaperone 46.8 15 0.00034 41.6 3.1 23 423-445 325-349 (595)
189 PF02685 Glucokinase: Glucokin 46.7 30 0.00066 35.9 4.9 21 5-25 1-21 (316)
190 PRK00109 Holliday junction res 46.4 1E+02 0.0022 27.8 7.8 24 2-25 4-27 (138)
191 PRK13411 molecular chaperone D 46.0 36 0.00077 39.2 5.8 62 495-559 294-357 (653)
192 PF07592 DDE_Tnp_ISAZ013: Rhod 45.2 50 0.0011 34.1 6.1 79 472-561 132-220 (311)
193 PLN03184 chloroplast Hsp70; Pr 45.1 20 0.00042 41.5 3.6 26 423-448 366-393 (673)
194 PF04312 DUF460: Protein of un 44.8 65 0.0014 29.2 6.0 29 3-32 33-61 (138)
195 PLN02902 pantothenate kinase 43.9 2.4E+02 0.0053 33.4 11.9 54 495-554 317-371 (876)
196 cd00529 RuvC_resolvase Hollida 43.7 1.2E+02 0.0026 27.8 8.0 54 4-65 2-58 (154)
197 PRK14878 UGMP family protein; 43.4 60 0.0013 33.8 6.6 71 5-78 1-74 (323)
198 PRK12379 propionate/acetate ki 43.3 1.3E+02 0.0029 32.3 9.1 66 484-552 265-340 (396)
199 PTZ00009 heat shock 70 kDa pro 43.3 44 0.00095 38.4 6.0 61 495-558 299-361 (653)
200 PF06723 MreB_Mbl: MreB/Mbl pr 43.2 25 0.00054 36.7 3.7 31 533-563 276-306 (326)
201 TIGR03281 methan_mark_12 putat 42.8 16 0.00035 37.4 2.2 23 4-26 1-23 (326)
202 PF14639 YqgF: Holliday-juncti 42.8 1.2E+02 0.0026 27.8 7.8 29 3-31 6-38 (150)
203 TIGR00250 RNAse_H_YqgF RNAse H 42.2 82 0.0018 28.2 6.4 21 5-25 1-21 (130)
204 PRK05183 hscA chaperone protei 40.9 24 0.00051 40.3 3.3 26 420-445 325-353 (616)
205 PF01548 DEDD_Tnp_IS110: Trans 40.6 50 0.0011 29.5 4.9 30 4-33 1-30 (144)
206 PF03309 Pan_kinase: Type III 40.6 87 0.0019 30.2 6.8 19 4-22 1-19 (206)
207 TIGR01991 HscA Fe-S protein as 40.1 29 0.00063 39.4 3.9 26 420-445 309-337 (599)
208 PTZ00009 heat shock 70 kDa pro 39.9 26 0.00056 40.3 3.5 23 423-445 333-357 (653)
209 TIGR00904 mreB cell shape dete 38.6 24 0.00052 36.7 2.7 21 425-445 282-304 (333)
210 TIGR01865 cas_Csn1 CRISPR-asso 38.0 25 0.00055 41.4 3.0 23 2-24 1-23 (805)
211 KOG0103|consensus 37.2 68 0.0015 36.6 6.0 63 496-561 301-364 (727)
212 PRK13328 pantothenate kinase; 36.0 39 0.00085 34.0 3.7 44 494-542 183-226 (255)
213 PRK00180 acetate kinase A/prop 35.9 1.3E+02 0.0028 32.5 7.7 46 506-553 300-347 (402)
214 PRK12397 propionate kinase; Re 35.4 2.4E+02 0.0053 30.4 9.6 67 484-552 269-344 (404)
215 COG0068 HypF Hydrogenase matur 35.4 92 0.002 35.7 6.6 56 494-556 663-719 (750)
216 PRK13322 pantothenate kinase; 34.8 36 0.00079 34.0 3.2 42 495-542 176-218 (246)
217 PRK13928 rod shape-determining 34.5 26 0.00057 36.5 2.3 23 423-445 275-300 (336)
218 PRK07157 acetate kinase; Provi 34.4 53 0.0012 35.2 4.5 30 1-30 2-32 (400)
219 TIGR00016 ackA acetate kinase. 33.1 1.6E+02 0.0034 31.8 7.7 47 506-554 304-352 (404)
220 PF00814 Peptidase_M22: Glycop 32.9 1.5E+02 0.0034 29.8 7.5 55 504-562 198-255 (268)
221 PF03702 UPF0075: Uncharacteri 32.7 66 0.0014 34.2 4.9 72 2-75 1-93 (364)
222 KOG2707|consensus 32.3 1.1E+02 0.0023 32.2 6.1 79 4-82 34-116 (405)
223 PRK12440 acetate kinase; Revie 31.7 63 0.0014 34.6 4.5 32 1-32 1-35 (397)
224 COG0282 ackA Acetate kinase [E 31.5 78 0.0017 33.7 5.0 27 3-29 2-29 (396)
225 PRK09585 anmK anhydro-N-acetyl 30.4 1.4E+02 0.003 31.8 6.7 76 1-77 1-98 (365)
226 KOG2707|consensus 30.3 1.4E+02 0.0031 31.4 6.5 55 496-555 272-330 (405)
227 PF07736 CM_1: Chorismate muta 30.0 80 0.0017 27.9 4.1 35 44-78 12-48 (118)
228 COG4012 Uncharacterized protei 29.3 1.6E+02 0.0035 29.8 6.5 30 4-34 229-258 (342)
229 TIGR00016 ackA acetate kinase. 29.2 72 0.0016 34.3 4.4 45 408-452 312-360 (404)
230 PRK07058 acetate kinase; Provi 28.0 1.7E+02 0.0037 31.4 7.0 47 505-553 295-342 (396)
231 PRK11031 guanosine pentaphosph 26.7 1.4E+02 0.0031 33.0 6.5 33 4-37 134-166 (496)
232 PRK03011 butyrate kinase; Prov 25.9 1.8E+02 0.004 30.8 6.8 70 1-75 1-73 (358)
233 PF06723 MreB_Mbl: MreB/Mbl pr 25.7 43 0.00094 35.0 2.0 28 425-453 276-305 (326)
234 PF13756 Stimulus_sens_1: Stim 25.7 1.5E+02 0.0033 25.7 5.2 24 10-33 15-38 (112)
235 COG1077 MreB Actin-like ATPase 25.2 92 0.002 32.4 4.2 68 496-563 248-316 (342)
236 PRK07058 acetate kinase; Provi 24.5 96 0.0021 33.3 4.3 45 408-452 304-351 (396)
237 PRK13929 rod-share determining 23.9 57 0.0012 34.1 2.5 23 423-445 278-303 (335)
238 PRK00180 acetate kinase A/prop 23.9 95 0.0021 33.5 4.2 45 408-452 308-356 (402)
239 COG1058 CinA Predicted nucleot 23.3 1.1E+02 0.0025 30.7 4.4 31 531-561 61-93 (255)
240 PF01869 BcrAD_BadFG: BadF/Bad 23.0 2.7E+02 0.0059 27.8 7.3 46 504-550 195-240 (271)
241 PF13660 DUF4147: Domain of un 22.9 1.6E+02 0.0034 29.4 5.3 87 423-541 40-128 (238)
242 PF07066 DUF3882: Lactococcus 22.6 4.5E+02 0.0097 24.2 7.5 25 1-26 1-30 (159)
243 cd02185 AroH Chorismate mutase 22.4 1.2E+02 0.0025 26.8 3.7 35 44-78 12-48 (117)
244 KOG1386|consensus 22.2 1.9E+02 0.0042 31.8 6.0 64 2-65 9-78 (501)
245 PRK13927 rod shape-determining 22.1 63 0.0014 33.5 2.5 21 425-445 279-301 (334)
246 PRK13930 rod shape-determining 21.9 63 0.0014 33.4 2.4 23 423-445 280-305 (335)
247 TIGR01796 CM_mono_aroH monofun 21.9 1.2E+02 0.0026 26.7 3.7 35 44-78 12-48 (117)
248 TIGR03706 exo_poly_only exopol 21.7 3E+02 0.0065 28.1 7.4 32 5-37 128-159 (300)
249 PF02541 Ppx-GppA: Ppx/GppA ph 21.5 1.1E+02 0.0024 30.9 4.1 58 4-62 114-173 (285)
250 PF04848 Pox_A22: Poxvirus A22 21.4 1.8E+02 0.0038 26.7 4.8 27 3-29 2-28 (143)
251 COG2441 Predicted butyrate kin 21.3 1.2E+02 0.0026 30.9 4.0 46 5-57 1-47 (374)
252 PRK12379 propionate/acetate ki 21.2 1.3E+02 0.0027 32.4 4.5 38 408-445 303-343 (396)
253 PRK13329 pantothenate kinase; 21.0 77 0.0017 31.7 2.7 25 1-26 1-28 (249)
254 cd06559 Endonuclease_V Endonuc 20.7 6E+02 0.013 24.7 8.7 68 3-89 27-104 (208)
255 PF00871 Acetate_kinase: Aceto 20.7 1.4E+02 0.003 32.1 4.6 72 4-76 2-88 (388)
256 KOG2708|consensus 20.1 3.8E+02 0.0082 26.6 7.0 54 495-554 225-278 (336)
No 1
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=8.3e-83 Score=704.39 Aligned_cols=464 Identities=43% Similarity=0.802 Sum_probs=386.8
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHh--cCCCCCeEEEEEeCCCc
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTK--DVNPAQIKGVGVDATCS 80 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~--~~~~~~I~aIgis~q~s 80 (564)
.+||||+|||++|++|||.+|+++++.+.++++.+|.+||+||||++||+++++++++++. +.+.++|.+||||+|++
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~~s 80 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSVKGIGFDATCS 80 (541)
T ss_pred CEEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhheEEEEeccccc
Confidence 3799999999999999999999999999999988999999999999999999999999984 34567899999999999
Q ss_pred eEEEcCCCCccccCCCCCCCCCcccccCcchHHHHHHHHhchhHHHHHhCCCCCCcChHHHHHHHHHhCChhHHhhhccc
Q psy10531 81 LVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLF 160 (564)
Q Consensus 81 ~v~~D~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~i~~~tG~~~~~~~~~~kl~Wl~~~~~Pe~~~~~~~~ 160 (564)
+++||++|+||...+++.+.+|+|+|+|+|+.++++++++...+++++||+++++.++++||+|+++|+ ||+|+|+++|
T Consensus 81 ~v~~D~~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~-Pe~~~~~~~~ 159 (541)
T TIGR01315 81 LVVLTHDGEPLPVSKNGGADQNIILWMDHRALAEAEKINATNHNLLRYVGGKMSVEMEIPKVLWLKNNM-PPELFARCKF 159 (541)
T ss_pred ceEEcCCCCeeecCCCCCcccceeEeecCcHHHHHHHHHHHHHHHHHHhCCeeCcchhHHHHHHHHHhC-hHHHHHhhhh
Confidence 999999999996666667778999999999999999997654578999999999999999999999999 9999999999
Q ss_pred cchhhHHHHhhhCCccccccccccccccc---cccCCCCHHHHHHcCCCccccccccccCCcccCCCcccCCC-CCHHHH
Q psy10531 161 FDLPDFLTWKLTGDETQSLCSLVCKWTYD---AYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHG-VSTEVA 236 (564)
Q Consensus 161 l~~~dyl~~~LTG~~~~s~as~s~~~l~d---~~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~~~~~~~G~~-v~~~~a 236 (564)
++++|||.|+|||+.+++.++++.+++|| +++++||+++++.+||++...+++..++|+++++++++| + |++++|
T Consensus 160 l~~~dyl~~~LTG~~~~d~~~as~~~~~d~~d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~i~~~~~~~G-~~v~~~~A 238 (541)
T TIGR01315 160 FDLTDFLTWRATGKEIRSFCSVVCKWGFVPVDGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSPGELVG-GGLTAEAA 238 (541)
T ss_pred cchhhhheeeeecchhHhHhHHhHhhhccccccccCCCCHHHHHHcCChhhhhccccccCCcccCCCcccc-cccCHHHH
Confidence 99999999999999887777777667887 699999999999999984110000022368999999999 9 999999
Q ss_pred HHcCCCCCCcEEeccchhHhhHhhhhc---cCCCCCCCcCCCcEEEEEccchhhhcccCCCccCCCceecccccccCCee
Q psy10531 237 RALGLNPGTPVSVSMIDAHAGALALLA---TSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQVPGVWGPYYEVILPNTH 313 (564)
Q Consensus 237 ~~~Gl~~g~pV~~g~~D~~aaa~g~g~---~~~~G~~~~~~~~~~~s~GTs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 313 (564)
+++||++|+||++|++|++|+++|+|+ .. +|....-...+++++|||+++..+.++|..+++.+.+++.+..++.|
T Consensus 239 ~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~-~g~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (541)
T TIGR01315 239 QELGLPAGTAVGSGLIDAHAGWIGTVGAKVAE-NGDVSQAFTRLAAVAGTSTCHMAMTKGPVFVPGVWGPYRDALIPGYW 317 (541)
T ss_pred HHhCCCCCCeEeechHhhhccccccccccccc-cccccCCCCcEEEEecCceEEEEecCCCccCCceeecccCccCCCce
Confidence 999999999999999999999999976 55 66200000128899999999888888877666655433345568899
Q ss_pred EeccccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCceEEccCCCCCCCCCCCCCcccce
Q psy10531 314 LLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMI 393 (564)
Q Consensus 314 ~~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 393 (564)
..+++++++|.+++|+++.+....+..+...+.+ ...|++|++.+++.. ..
T Consensus 318 ~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-----~~----------------------- 368 (541)
T TIGR01315 318 LAEGGQSAAGELMDHMLETHVAYDETVKEAEAAG-KNIYDYLNEHLKEMA-----AK----------------------- 368 (541)
T ss_pred EEecCccchhHHHHHHHHhCccchHHHHHHHhcc-CcHHHHHHHHHHHhh-----hh-----------------------
Confidence 9999999999999999997642222222222212 245777766544332 00
Q ss_pred eccCCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeCCCCCCcccccCcceEEeeccc
Q psy10531 394 CGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTDTRHSTELTADFHVWPDFH 473 (564)
Q Consensus 394 ~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~~~P~~~ 473 (564)
.+ ++.++.+++|++|+|||.
T Consensus 369 ---------------------------------------------------------~~---~~~~~~~~~gl~flP~l~ 388 (541)
T TIGR01315 369 ---------------------------------------------------------TN---APSISYLVRHFHVYPDLW 388 (541)
T ss_pred ---------------------------------------------------------cc---cCccccCCCceEEccccc
Confidence 00 111122358999999999
Q ss_pred CCCCCCCCCCccccEecCCCCCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHH
Q psy10531 474 GNRSPLADVDMKGMICGLTLDSSE---TSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTH 550 (564)
Q Consensus 474 G~r~P~~~~~~~g~~~Gl~~~~~~---~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~ 550 (564)
|+|+|+|||++||+|+||+.+|++ +|| +||++|||||++|+++|.|++.|.+ +++|+++||++||++|+||+
T Consensus 389 G~r~P~~dp~arG~~~Gl~~~~~~~~~~~~---~rAvlEgiaf~~r~~~e~l~~~g~~--~~~i~~~GGga~s~~w~Qi~ 463 (541)
T TIGR01315 389 GNRSPIADPNMRGVIIGLSMDRSKDGLALL---YYATMEFIAYGTRQIVEAMNTAGHT--IKSIFMSGGQCQNPLLMQLI 463 (541)
T ss_pred cCcCCCCCCCCceEEECCCCCCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCC--ccEEEEecCcccCHHHHHHH
Confidence 999999999999999999999999 777 9999999999999999999988877 89999999999999999999
Q ss_pred hhhcCCeeeccCC
Q psy10531 551 ADVTGCNVLCPQE 563 (564)
Q Consensus 551 Adv~g~~v~~~~~ 563 (564)
|||||+||+++++
T Consensus 464 ADvlg~pV~~~~~ 476 (541)
T TIGR01315 464 ADACDMPVLIPYV 476 (541)
T ss_pred HHHHCCeeEecCh
Confidence 9999999998864
No 2
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=5.8e-82 Score=690.11 Aligned_cols=416 Identities=23% Similarity=0.334 Sum_probs=374.2
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCC-Cce
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVDAT-CSL 81 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis~q-~s~ 81 (564)
++||||+||||+|+++||.+|+++++.+.+|+..++.+||+||||++||++++++++++..+...++|.+||||+| +++
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~~~~~I~aI~is~q~~~~ 80 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSLQDVKALGIAGQMHGA 80 (484)
T ss_pred CEEEEEecccceEEEEEcCCCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhCCccceeEEEEecCCCce
Confidence 5899999999999999999999999999999988999999999999999999999999985545578999999998 899
Q ss_pred EEEcCCCCccccCCCCCCCCCcccccCcchHHHHHHHHhchhHHHHHhCCCCCCcChHHHHHHHHHhCChhHHhhhcccc
Q psy10531 82 VALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFF 161 (564)
Q Consensus 82 v~~D~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~i~~~tG~~~~~~~~~~kl~Wl~~~~~Pe~~~~~~~~l 161 (564)
+++|++|+|| +|+|+|+|+|+.++++++.+...+++++||+++++.++++||+|+++|+ ||+|+|+++|+
T Consensus 81 v~~D~~g~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~-Pe~~~~~~~~~ 150 (484)
T PRK15027 81 TLLDAQQRVL---------RPAILWNDGRCAQECALLEARVPQSRVITGNLMMPGFTAPKLLWVQRHE-PEIFRQIDKVL 150 (484)
T ss_pred EEECCCcCCc---------cccccccCccHHHHHHHHHHhcchhHHHhCCCcCccchHHHHHHHHHhC-HHHHHHhhhhc
Confidence 9999999999 9999999999999999998764467889999999999999999999999 99999999999
Q ss_pred chhhHHHHhhhCCccccccccccccccccccCCCCHHHHHHcCCCccccccccccCCcccCCCcccCCCCCHHHHHHcCC
Q psy10531 162 DLPDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVARALGL 241 (564)
Q Consensus 162 ~~~dyl~~~LTG~~~~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~~~~~~~G~~v~~~~a~~~Gl 241 (564)
+++|||+|+|||+..++.++++.+++||+++++|++++++.+||+.. +|| +++++++++| +|++++|+++||
T Consensus 151 ~~~dyl~~~LTG~~~~d~s~as~t~l~d~~~~~w~~~ll~~~gi~~~------~lP-~v~~~~~~~G-~l~~~~a~~~GL 222 (484)
T PRK15027 151 LPKDYLRLRMTGEFASDMSDAAGTMWLDVAKRDWSDVMLQACHLSRD------QMP-ALYEGSEITG-ALLPEVAKAWGM 222 (484)
T ss_pred ChHHHHHhhhcCCccccHHHhhcccccccccCCCcHHHHHHhCCCHH------HCC-CCCCCccccc-cccHHHHHHhCC
Confidence 99999999999999888888888889999999999999999999863 565 7999999999 999999999999
Q ss_pred CCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhcccCCCccCCCceecccccccCCeeEeccccCc
Q psy10531 242 NPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQVPGVWGPYYEVILPNTHLLESGQSA 321 (564)
Q Consensus 242 ~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (564)
+ ++||++|++|++|+++|+|+++ ||+ +++++|||+++..++++|..++......++|..++.|..++.+.+
T Consensus 223 ~-~~pV~~g~~D~~aa~~g~g~~~-~g~-------~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (484)
T PRK15027 223 A-TVPVVAGGGDNAAGAVGVGMVD-ANQ-------AMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLS 293 (484)
T ss_pred C-CCeEEecccHHHHHHhccCccc-CCc-------EEEEecCceEEEEecCCcccCchhceeecceecCCceEEEEEehh
Confidence 7 6999999999999999999998 898 999999999988888877655532222345667899999999999
Q ss_pred hhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCceEEccCCCCCCCCCCCCCcccceeccCCCCC
Q psy10531 322 TGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSS 401 (564)
Q Consensus 322 ~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 401 (564)
+|.+++|+++++.. ..|+++.+.+++.+
T Consensus 294 ~g~~~~W~~~~~~~--------------~~~~~~~~~a~~~~-------------------------------------- 321 (484)
T PRK15027 294 AASCLDWAAKLTGL--------------SNVPALIAAAQQAD-------------------------------------- 321 (484)
T ss_pred hHHHHHHHHHHhCC--------------ccHHHHHHHHhhCC--------------------------------------
Confidence 99999999887531 12445544443332
Q ss_pred chhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeCCCCCCcccccCcceEEeecccCCCCCCCC
Q psy10531 402 ETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTDTRHSTELTADFHVWPDFHGNRSPLAD 481 (564)
Q Consensus 402 ~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~~~P~~~G~r~P~~~ 481 (564)
++++|++|+|||.|+|+|+||
T Consensus 322 -----------------------------------------------------------~g~~gl~~~P~l~G~r~P~~~ 342 (484)
T PRK15027 322 -----------------------------------------------------------ESAEPVWFLPYLSGERTPHNN 342 (484)
T ss_pred -----------------------------------------------------------CCCCceEEecccccCCCcCCC
Confidence 247899999999999999999
Q ss_pred CCccccEecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhcCCeeecc
Q psy10531 482 VDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCP 561 (564)
Q Consensus 482 ~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~~ 561 (564)
+++||+|+|++.+|+++|+ +||++||+||.+|+++|.|++.|.+ +++|+++||++||++|+||+||++|+||++.
T Consensus 343 ~~arg~f~gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~g~~--~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~ 417 (484)
T PRK15027 343 PQAKGVFFGLTHQHGPNEL---ARAVLEGVGYALADGMDVVHACGIK--PQSVTLIGGGARSEYWRQMLADISGQQLDYR 417 (484)
T ss_pred CCcceEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHcCCC--ccEEEEeCcccCCHHHHHHHHHHhCCeEEee
Confidence 9999999999999999999 9999999999999999999887877 8999999999999999999999999999665
No 3
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=1.9e-80 Score=681.58 Aligned_cols=428 Identities=20% Similarity=0.361 Sum_probs=380.1
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEeCC-Cc
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNP-AQIKGVGVDAT-CS 80 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~-~~I~aIgis~q-~s 80 (564)
|+||||+|||++|++++|.+|+++++.+.+++...+.+|+.|||+++||+++++++++++..... ++|.+||||+| ++
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~I~~Igis~~~~~ 80 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLEDEDEILFVSFSTQMHS 80 (505)
T ss_pred CEEEEeccccceEEEEEcCCCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEecccce
Confidence 68999999999999999999999999999999888899999999999999999999999843221 57999999998 89
Q ss_pred eEEEcCCCCccccCCCCCCCCCcccccCcchHHHHHHHHhc--hhHHHHHhCCCCCCcChHHHHHHHHHhCChhHHhhhc
Q psy10531 81 LVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAG 158 (564)
Q Consensus 81 ~v~~D~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~--~~~i~~~tG~~~~~~~~~~kl~Wl~~~~~Pe~~~~~~ 158 (564)
+++||++|+|| +|+|+|+|+|+.++++++.+. .++++++||+++++.++++||+|+++|+ |++|+|++
T Consensus 81 ~v~~D~~g~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~-p~~~~~~~ 150 (505)
T TIGR01314 81 LIAFDENWQPL---------TRLITWADNRAVKYAEQIKESKNGFDIYRRTGTPIHPMAPLSKIIWLEAEH-PDIYQKAA 150 (505)
T ss_pred eEEECCCcCCc---------ccceeccccchHHHHHHHHhhcCHHHHHHHHCCCCCccchHHHHHHHHHhC-hhHHHhhc
Confidence 99999999999 999999999999999999875 3679999999999999999999999999 99999999
Q ss_pred cccchhhHHHHhhhCCccccccccccccccccccCCCCHHHHHHcCCCccccccccccCCcccCCCcccCCCCCHHHHHH
Q psy10531 159 LFFDLPDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVARA 238 (564)
Q Consensus 159 ~~l~~~dyl~~~LTG~~~~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~~~~~~~G~~v~~~~a~~ 238 (564)
+|++++|||.|+|||+.++|.++++.+++||+++++|++++++.+||++. .|| +++++++++| +|++++|++
T Consensus 151 ~~l~~~dyl~~~LTG~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~------~lP-~l~~~g~~iG-~l~~~~a~~ 222 (505)
T TIGR01314 151 KYLEIKGYIFQRLFGTYKIDYSTASATGMFNLFELDWDKEALELTGIKES------QLP-KLVPTTEIEE-NLPHEYAKK 222 (505)
T ss_pred EEECHHHHHHHHHcCCceeEhhhhhhhcceeCCCCCCCHHHHHhcCCCHH------HCC-CCcCcccccC-CcCHHHHHH
Confidence 99999999999999999888877777789999999999999999999973 565 7999999999 999999999
Q ss_pred cCCCCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhcccCCCccCCCceeccccccc-CCeeEecc
Q psy10531 239 LGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQVPGVWGPYYEVIL-PNTHLLES 317 (564)
Q Consensus 239 ~Gl~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~ 317 (564)
+||++|+||++|++|++|+++|+|++. ||+ +++++|||+++..++++|..++.... +++.. ++.|..++
T Consensus 223 ~GL~~g~pV~~g~~D~~aa~~g~g~~~-~g~-------~~~~~GTs~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 292 (505)
T TIGR01314 223 MGIQSSTPFVIGASDGVLSNLGVNAIK-KGE-------AAVTIGTSGAIRTVIDKPKTDEKGRI--FCYALTKEHWVIGG 292 (505)
T ss_pred hCCCCCCeEEEeccHHHHHHhcCCCCC-CCc-------EEEEechhheeeeccCcCccCCCCce--EEEEecCCcEEEEe
Confidence 999999999999999999999999988 898 99999999999999888776654321 22323 47799999
Q ss_pred ccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCceEEccCCCCCCCCCCCCCcccceeccC
Q psy10531 318 GQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLT 397 (564)
Q Consensus 318 ~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 397 (564)
.++++|.+++||++++.. +..+.+.+.+ ...|+.|++++++.+
T Consensus 293 ~~~~~g~~~~W~~~~~~~--~~~~~~~~~~-~~~y~~l~~~a~~~~---------------------------------- 335 (505)
T TIGR01314 293 PVNNGGDVLRWARDEIFD--SEIETATRLG-IDPYDVLTEIAARVS---------------------------------- 335 (505)
T ss_pred eecchHhHHHHHHHHhhh--hhhhhhhhcC-CCHHHHHHHHHhhCC----------------------------------
Confidence 999999999999997641 1111122222 356888887776543
Q ss_pred CCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeCCCCCCcccccCcceEEeecccCCCC
Q psy10531 398 LDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTDTRHSTELTADFHVWPDFHGNRS 477 (564)
Q Consensus 398 ~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~~~P~~~G~r~ 477 (564)
++++|++|+|||.|+|+
T Consensus 336 ---------------------------------------------------------------~g~~gl~~~P~l~G~r~ 352 (505)
T TIGR01314 336 ---------------------------------------------------------------PGADGLLFHPYLAGERA 352 (505)
T ss_pred ---------------------------------------------------------------CCCCceEEecccccCCC
Confidence 13679999999999999
Q ss_pred CCCCCCccccEecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCEEEEEcCCcccHHHHHHHhhhcCC
Q psy10531 478 PLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHA-AGKTPAISTLLVSGGLAKNPLYVQTHADVTGC 556 (564)
Q Consensus 478 P~~~~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~-~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~ 556 (564)
|+||+++||+|+||+.+|+++|+ +||++||+||.+|++++.+.+ .|.+ +++|+++||++||++|+||+|||+|+
T Consensus 353 P~~~~~~rg~f~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~~~~~~g~~--~~~i~~~GGga~s~~w~Qi~Adv~g~ 427 (505)
T TIGR01314 353 PLWNANARGSFFGLTYSHKKEHM---IRAALEGVIYNLYTVALALVEVMGDP--LNMIQATGGFASSEVWRQMMSDIFEQ 427 (505)
T ss_pred CCCCCCccEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCC--CcEEEEecCcccCHHHHHHHHHHcCC
Confidence 99999999999999999999999 999999999999999999976 5666 89999999999999999999999999
Q ss_pred eeeccCC
Q psy10531 557 NVLCPQE 563 (564)
Q Consensus 557 ~v~~~~~ 563 (564)
||++++.
T Consensus 428 pv~~~~~ 434 (505)
T TIGR01314 428 EIVVPES 434 (505)
T ss_pred eeEecCC
Confidence 9998753
No 4
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=8.3e-79 Score=674.85 Aligned_cols=441 Identities=32% Similarity=0.463 Sum_probs=373.9
Q ss_pred CcEEEEEEeCccceEEEEEeC-CCCEEEEEEeecccc------CCCCCccccCHHHHHHHHHHHHHHHH--hcCCCCCeE
Q psy10531 1 MEYLLSVDVGTSSVRAALVST-RGKVSPIAVRPIALW------CPKPQLYEQSSEDIWNSVCLAIRDVT--KDVNPAQIK 71 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~-~G~il~~~~~~~~~~------~~~~g~~eqd~~~~~~~i~~~l~~l~--~~~~~~~I~ 71 (564)
|+|+||||+||||+|++|||. +|+++++.+.+|+.. +|++||+||||++||+++++++++++ .+.++.+|.
T Consensus 2 ~~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~I~ 81 (548)
T PRK04123 2 MAYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAGVDPAAVV 81 (548)
T ss_pred CcEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcCCChhhEE
Confidence 468999999999999999995 999999999999843 58999999999999999999999988 344567899
Q ss_pred EEEEeCC-CceEEEcCCCCccccCC--CCCCCCCcccccCcchHHHHHHHHhch----hHHHHHh-CCCCCCcChHHHHH
Q psy10531 72 GVGVDAT-CSLVALDTNHQPLTISP--TGDDSRNVLLWMDHRAVSEADQINATK----HSVLDTV-GGKISPEMETPKLL 143 (564)
Q Consensus 72 aIgis~q-~s~v~~D~~G~pl~~~~--~~~~~~p~i~W~D~Ra~~~~~~l~~~~----~~i~~~t-G~~~~~~~~~~kl~ 143 (564)
+||||+| +++++||++|+||.... +..+..|+|+|+|.|+.++++++++.. +++|+++ |+.+++.++++||+
T Consensus 82 aIgis~~~~~~v~~D~~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~kl~ 161 (548)
T PRK04123 82 GIGVDFTGSTPAPVDADGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWFWAKIL 161 (548)
T ss_pred EEEEecccceeEEECCCCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhccchhhHHHHhcCCccCcchHHHHHH
Confidence 9999999 89999999999992111 112223999999999999999998742 4577655 99999999999999
Q ss_pred HHHHhCChhHHhhhccccchhhHHHHhhhCC-----ccccccccccccccccc-cCCCCHHHHHHcC------CCccccc
Q psy10531 144 WLKKNLPDTCWRRAGLFFDLPDFLTWKLTGD-----ETQSLCSLVCKWTYDAY-DRRWNEDYFEKIG------LGDLKQN 211 (564)
Q Consensus 144 Wl~~~~~Pe~~~~~~~~l~~~dyl~~~LTG~-----~~~s~as~s~~~l~d~~-~~~W~~ell~~~g------i~~~~~~ 211 (564)
||++|+ |++|+|+++|++++|||.|+|||+ ...+.+.++.+++||.+ ++.||+++|+.+| |+.
T Consensus 162 Wl~~~~-P~~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~~as~~~~~d~~~~~~~s~ell~~~g~~l~~~i~~---- 236 (548)
T PRK04123 162 HVLRED-PAVYEAAASWVEACDWVVALLTGTTDPQDIVRSRCAAGHKALWHESWGGLPSADFFDALDPLLARGLRD---- 236 (548)
T ss_pred HHHhhC-HHHHHHHhHhccHHHHHHHHHhCCCCccccccchhhcccccccccccCCCCCHHHHHHhccchhhhhHh----
Confidence 999999 999999999999999999999994 44555555666789998 5666999999996 775
Q ss_pred cccccCCcccCCCcccCCCCCHHHHHHcCCCCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhccc
Q psy10531 212 GWRAIGNTVKNPGQPIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALS 291 (564)
Q Consensus 212 ~~~~Lpp~i~~~~~~~G~~v~~~~a~~~Gl~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~ 291 (564)
.++|+++++++++| .|++++|+++||++|+||++|++|++|+++|+|+ . +|+ +++++||++++..++
T Consensus 237 ---~llP~l~~~g~~~G-~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~g~-~-~g~-------~~~~~GTs~~~~~~~ 303 (548)
T PRK04123 237 ---KLFTETWTAGEPAG-TLTAEWAQRLGLPEGVAVSVGAFDAHMGAVGAGA-E-PGT-------LVKVMGTSTCDILLA 303 (548)
T ss_pred ---hcCCccccCCCccc-ccCHHHHHHhCCCCCCeEEecchhhhhhhcccCc-C-CCc-------EEEEecCceEEEEec
Confidence 45568999999999 9999999999999999999999999999999998 7 888 899999999988888
Q ss_pred CCCccCCCceecccccccCCeeEeccccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCce
Q psy10531 292 AKKVQVPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADF 371 (564)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 371 (564)
++|...+..+..+..+..++.|..+++++++|.+++||++.+. .++..+.+++.+ ...|+.|++++++.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~-~~~~~~~~~~~~-~~~~~~l~~~a~~~~-------- 373 (548)
T PRK04123 304 DKQRAVPGICGQVDGSIVPGLIGYEAGQSAVGDIFAWFARLLV-PPEYKDEAEARG-KQLLELLTEAAAKQP-------- 373 (548)
T ss_pred CCccccCceeecccCcccCCeeeecccccchHHHHHHHHHhcc-hHhHHHHHHhcC-CcHHHHHHHHHHhcC--------
Confidence 8765444432222223457889999999999999999999874 122222222222 346788877776543
Q ss_pred EEccCCCCCCCCCCCCCcccceeccCCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceee
Q psy10531 372 HVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTI 451 (564)
Q Consensus 372 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~ 451 (564)
T Consensus 374 -------------------------------------------------------------------------------- 373 (548)
T PRK04123 374 -------------------------------------------------------------------------------- 373 (548)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccccCcceEEeecccCCCCCCCCCCccccEecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy10531 452 SPTDTRHSTELTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAI 531 (564)
Q Consensus 452 ~~~~~~~~~~~~~gl~~~P~~~G~r~P~~~~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~ 531 (564)
++++|++|+|||.|+|+|+||+++||+|+|++.+|+++|+ +||++||++|.+|+++|.|++.|.+ +
T Consensus 374 ---------~g~~gl~f~P~l~Ger~P~~~~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~~~~~e~l~~~g~~--~ 439 (548)
T PRK04123 374 ---------PGEHGLVALDWFNGRRTPLADQRLKGVITGLTLGTDAPDI---YRALIEATAFGTRAIMECFEDQGVP--V 439 (548)
T ss_pred ---------CCCCceEEcccccCCCCCCCCCCCceEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHcCCC--c
Confidence 1478999999999999999999999999999999999999 9999999999999999999987777 8
Q ss_pred CEEEEEcCC-cccHHHHHHHhhhcCCeeeccCC
Q psy10531 532 STLLVSGGL-AKNPLYVQTHADVTGCNVLCPQE 563 (564)
Q Consensus 532 ~~i~~~GG~-a~s~~~~q~~Adv~g~~v~~~~~ 563 (564)
++|+++||+ |||++|+||+||+||+||+++++
T Consensus 440 ~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~ 472 (548)
T PRK04123 440 EEVIAAGGIARKNPVLMQIYADVLNRPIQVVAS 472 (548)
T ss_pred ceEEEeCCCcccCHHHHHHHHHhcCCceEecCc
Confidence 999999999 99999999999999999987753
No 5
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=8.6e-79 Score=667.34 Aligned_cols=415 Identities=23% Similarity=0.380 Sum_probs=360.9
Q ss_pred cEEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHh--cCCCCCeEEEEEeCC-
Q psy10531 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTK--DVNPAQIKGVGVDAT- 78 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~--~~~~~~I~aIgis~q- 78 (564)
+|+||||+||||+|+++||.+|+++++.+++|+..+|.+||+||||++||+++++++++++. +.++++|.+||+|+|
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~~Igis~~~ 84 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGISPDQIAAIGITNQR 84 (498)
T ss_pred CEEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEecCc
Confidence 48999999999999999999999999999999988999999999999999999999999983 445678999999999
Q ss_pred CceEEEcCC-CCccccCCCCCCCCCcccccCcchHHHHHHHHhc--hhHHHHHhCCCCCCcChHHHHHHHHHhCChhHHh
Q psy10531 79 CSLVALDTN-HQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWR 155 (564)
Q Consensus 79 ~s~v~~D~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~--~~~i~~~tG~~~~~~~~~~kl~Wl~~~~~Pe~~~ 155 (564)
+++++||++ |+|+ +|+|+|+|.|+.++++++.+. .++++++||+++++.++++||+|+++|+ |++|+
T Consensus 85 ~~~v~~D~~~G~pl---------~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~-p~~~~ 154 (498)
T PRK00047 85 ETTVVWDKETGRPI---------YNAIVWQDRRTADICEELKRDGYEDYIREKTGLVIDPYFSGTKIKWILDNV-EGARE 154 (498)
T ss_pred ceEEEEECCCCcCC---------cccceecccchHHHHHHHHhccchhhHHHhhCCCCCccchHHHHHHHHHcC-HhHHH
Confidence 899999965 9999 999999999999999999865 2459999999999999999999999999 99988
Q ss_pred hhcc----ccchhhHHHHhhhCC--ccccccccccccccccccCCCCHHHHHHcCCCccccccccccCCcccCCCcccCC
Q psy10531 156 RAGL----FFDLPDFLTWKLTGD--ETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGH 229 (564)
Q Consensus 156 ~~~~----~l~~~dyl~~~LTG~--~~~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~~~~~~~G~ 229 (564)
++.+ |++++|||.|+|||. .+++.++++.+++||+++++|++++++.+||++. .|| +++++++++|
T Consensus 155 ~~~~~~~~~~~~~dyl~~~LTG~~~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~------~lP-~i~~~g~~~G- 226 (498)
T PRK00047 155 RAEKGELLFGTIDTWLVWKLTGGKVHVTDYTNASRTMLFNIHTLDWDDELLELLDIPRS------MLP-EVRPSSEVYG- 226 (498)
T ss_pred HHhcCCeEEeChHHhHhhhhcCCCeeEeechHHhhhhccccccCccCHHHHHhcCCCHH------HCC-CccCCccccc-
Confidence 8764 778999999999975 5778777777789999999999999999999963 465 7999999999
Q ss_pred CCCHHHHHHcCCCCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhccc-CCCccCCCceecccccc
Q psy10531 230 GVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALS-AKKVQVPGVWGPYYEVI 308 (564)
Q Consensus 230 ~v~~~~a~~~Gl~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~-~~p~~~~~~~~~~~~~~ 308 (564)
.|+++ +++.+||||++|++|++|+++|+|++. ||+ +++++|||+++.+.+ ++|..++......+.+.
T Consensus 227 ~v~~~----~~l~~g~pV~~g~~D~~aa~~G~G~~~-~g~-------~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (498)
T PRK00047 227 KTNPY----GFFGGEVPIAGIAGDQQAALFGQLCFE-PGM-------AKNTYGTGCFMLMNTGEKAVKSENGLLTTIAWG 294 (498)
T ss_pred ccccc----ccCCCCceEEEEccHHHHHHHhCcCCC-CCc-------eEEeeccceEEEEecCCccccCCCCceeEEEEE
Confidence 89987 667799999999999999999999998 898 899999998877666 46666554211112223
Q ss_pred cCC--eeEeccccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCceEEccCCCCCCCCCCC
Q psy10531 309 LPN--THLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLAD 386 (564)
Q Consensus 309 ~~~--~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 386 (564)
.++ .|.++++++++|.+++|+++++.. ...++++++++++.
T Consensus 295 ~~~~~~~~~~g~~~~~g~~l~W~~~~~~~-------------~~~~~~~~~~a~~~------------------------ 337 (498)
T PRK00047 295 IDGKVVYALEGSIFVAGSAIQWLRDGLKI-------------ISDASDSEALARKV------------------------ 337 (498)
T ss_pred cCCCcEEEEEeeHhhHHHHHHHHHHHhcC-------------CCCHHHHHHHHhcC------------------------
Confidence 344 699999999999999999997641 01133444433221
Q ss_pred CCcccceeccCCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeCCCCCCcccccCcce
Q psy10531 387 ADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTDTRHSTELTADF 466 (564)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl 466 (564)
++++|+
T Consensus 338 --------------------------------------------------------------------------~~~~gl 343 (498)
T PRK00047 338 --------------------------------------------------------------------------EDNDGV 343 (498)
T ss_pred --------------------------------------------------------------------------CCCCCE
Confidence 136799
Q ss_pred EEeecccCCCCCCCCCCccccEecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCEEEEEcCCcccHH
Q psy10531 467 HVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHA-AGKTPAISTLLVSGGLAKNPL 545 (564)
Q Consensus 467 ~~~P~~~G~r~P~~~~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~-~g~~~~~~~i~~~GG~a~s~~ 545 (564)
+|+|||.|+|+|+||+++||+|+|++.+|+++|+ +||++||+||.+|+++|.|++ .|.+ +++|+++||++||++
T Consensus 344 ~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~l---~rAvlEgia~~~r~~~e~l~~~~g~~--~~~i~~~GGga~s~~ 418 (498)
T PRK00047 344 YVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHI---IRATLESIAYQTRDVLDAMQADSGIR--LKELRVDGGAVANNF 418 (498)
T ss_pred EEeCccccCCCCCCCCCCcEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCC--CceEEEecCcccCHH
Confidence 9999999999999999999999999999999999 999999999999999999986 4777 899999999999999
Q ss_pred HHHHHhhhcCCeeeccC
Q psy10531 546 YVQTHADVTGCNVLCPQ 562 (564)
Q Consensus 546 ~~q~~Adv~g~~v~~~~ 562 (564)
|+||+|||+|+||++++
T Consensus 419 w~Qi~ADvlg~pV~~~~ 435 (498)
T PRK00047 419 LMQFQADILGVPVERPV 435 (498)
T ss_pred HHHHHHHhhCCeeEecC
Confidence 99999999999999865
No 6
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=1.5e-78 Score=670.39 Aligned_cols=430 Identities=32% Similarity=0.454 Sum_probs=369.8
Q ss_pred EEEEEEeCccceEEEEEe-CCCCEEEEEEeeccc-----cCCC------CCccccCHHHHHHHHHHHHHHHHhc--CCCC
Q psy10531 3 YLLSVDVGTSSVRAALVS-TRGKVSPIAVRPIAL-----WCPK------PQLYEQSSEDIWNSVCLAIRDVTKD--VNPA 68 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d-~~G~il~~~~~~~~~-----~~~~------~g~~eqd~~~~~~~i~~~l~~l~~~--~~~~ 68 (564)
|+||||+||||+|++||| .+|+++++.+.+|++ .+|. +||+||||++||+++++++++++.+ .+++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~~~~~ 81 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELGVDPA 81 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 799999999999999999 899999999999984 4564 8999999999999999999999843 3456
Q ss_pred CeEEEEEeCC-CceEEEcCCCCccccCCCCCCCCC-----------cccccCcchHHHHHHHHhch----hHHHHHhCCC
Q psy10531 69 QIKGVGVDAT-CSLVALDTNHQPLTISPTGDDSRN-----------VLLWMDHRAVSEADQINATK----HSVLDTVGGK 132 (564)
Q Consensus 69 ~I~aIgis~q-~s~v~~D~~G~pl~~~~~~~~~~p-----------~i~W~D~Ra~~~~~~l~~~~----~~i~~~tG~~ 132 (564)
+|++||+|+| +|++++|++|+|| +| +|+|+|+|+.++++++++.. ++++++||++
T Consensus 82 ~I~aI~~s~q~~s~v~~D~~g~pl---------~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~ 152 (536)
T TIGR01234 82 DVVGIGVDFTACTPAPIDSDGNPL---------CLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHAPGEVDLSRYGGI 152 (536)
T ss_pred HEEEEEEecCcceeEEECCCCCEe---------ecccccccCcccceeeeccCCcHHHHHHHHHHhhccchhHHHhhCCc
Confidence 7999999999 9999999999999 72 99999999999999998752 5689999999
Q ss_pred CCCcChHHHHHHHHHhCChhHHhhhccccchhhHHHHhhhCCccccccccccccccccccCCCCHHHHHHcCC------C
Q psy10531 133 ISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYFEKIGL------G 206 (564)
Q Consensus 133 ~~~~~~~~kl~Wl~~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~s~as~s~~~l~d~~~~~W~~ell~~~gi------~ 206 (564)
+++.++++||+|+++|+ ||+|+|+++|++++|||.|+|||+.+.+.++++.+++++...+.|++++++.+|+ +
T Consensus 153 ~~~~~~~~kl~Wl~~~~-pe~~~~~~~~l~~~dyl~~~LTG~~~~d~s~a~~~~l~~~~w~~~~~~~l~~~g~~~~~~lp 231 (536)
T TIGR01234 153 ISSEWFWAKILQITEED-PAIYQAADRWIELADWIVAQLSGDIRRGRCTAGYKALWHESWGYPSASFFDELNPILNRHLP 231 (536)
T ss_pred cCchhHHHHHHHHHhhC-hHHHHHHhhhcCHHHHHHHHHhCCccccchhcccceeccccccCCCHHHHHHhcchhhhhhh
Confidence 99999999999999999 9999999999999999999999998877766666556655444459999999996 5
Q ss_pred ccccccccccCCcccCCCcccCCCCCHHHHHHcCCCCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchh
Q psy10531 207 DLKQNGWRAIGNTVKNPGQPIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTC 286 (564)
Q Consensus 207 ~~~~~~~~~Lpp~i~~~~~~~G~~v~~~~a~~~Gl~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~ 286 (564)
+ +++|+++++++++| +|++++|+++||++|+||++|++|++|+++|+|++. +|+ +++++|||.+
T Consensus 232 ~-------~~~p~i~~~g~~~G-~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~-~g~-------~~~~~GTs~~ 295 (536)
T TIGR01234 232 D-------KLFTDIWTAGEPAG-TLTPEWAQRTGLPEGVVVAVGNFDAHVGAVAAGIAQ-PGA-------LVKIMGTSTC 295 (536)
T ss_pred h-------hcCCceecCCCccc-ccCHHHHHHhCCCCCCeEEecchhHhhhhhcccccc-CCc-------EEEEEccceE
Confidence 4 45568999999999 999999999999999999999999999999999988 898 9999999998
Q ss_pred hhcccCCCccCCCceecccccccCCeeEeccccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCC
Q psy10531 287 HMALSAKKVQVPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTE 366 (564)
Q Consensus 287 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 366 (564)
+..+.+++...+.....+..+..++.|..+++++++|.+++||++++. .++....++..+ ...|+.|++.+++.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~-~~~~~~~~~~~~-~~~~~~l~~~a~~~p--- 370 (536)
T TIGR01234 296 HVLIGDKQRAVPGMCGVVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCV-PPELKTEANASQ-KQLHEALSEAAAKQP--- 370 (536)
T ss_pred EEEecCccccCCceeeeccCcccCCeeEEeccccchHHHHHHHHHHhc-chHHHHHHHhcC-CCHHHHHHHHHHhCC---
Confidence 877777654433322111122446789999999999999999999874 222222222222 345778777665443
Q ss_pred CCCceEEccCCCCCCCCCCCCCcccceeccCCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCC
Q psy10531 367 LTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNH 446 (564)
Q Consensus 367 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~ 446 (564)
T Consensus 371 -------------------------------------------------------------------------------- 370 (536)
T TIGR01234 371 -------------------------------------------------------------------------------- 370 (536)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeCCCCCCcccccCcceEEeecccCCCCCCCCCCccccEecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy10531 447 QPLTISPTDTRHSTELTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAG 526 (564)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~gl~~~P~~~G~r~P~~~~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g 526 (564)
++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+ +||++||+||.+|+++|.|++.|
T Consensus 371 --------------~g~~gllflP~l~Ger~P~~d~~arG~~~Gl~~~~~~~~~---~RAvlEgia~~~~~~l~~l~~~g 433 (536)
T TIGR01234 371 --------------SGEHGLVALDWFNGNRSPLVDQRLKGVITGLTLATDAPLL---YRALIEATAFGTRMIMETFTDSG 433 (536)
T ss_pred --------------CCCCCeEecchhccCCCCCCCCcceEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHhcC
Confidence 2478999999999999999999999999999999999999 99999999999999999999878
Q ss_pred CCCCCCEEEEEcCC-cccHHHHHHHhhhcCCeeeccC
Q psy10531 527 KTPAISTLLVSGGL-AKNPLYVQTHADVTGCNVLCPQ 562 (564)
Q Consensus 527 ~~~~~~~i~~~GG~-a~s~~~~q~~Adv~g~~v~~~~ 562 (564)
.+ +++|+++||+ |||++|+||+||+||+||++++
T Consensus 434 ~~--~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~ 468 (536)
T TIGR01234 434 VP--VEELMAAGGIARKNPVIMQIYADVTNRPLQIVA 468 (536)
T ss_pred CC--cceEEEeCCccccCHHHHHHHHHhhCCeeEecc
Confidence 77 8999999999 9999999999999999998875
No 7
>PLN02295 glycerol kinase
Probab=100.00 E-value=1.4e-78 Score=667.15 Aligned_cols=412 Identities=22% Similarity=0.344 Sum_probs=354.6
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHh--cCCCCC----eEEEEEe
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTK--DVNPAQ----IKGVGVD 76 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~--~~~~~~----I~aIgis 76 (564)
|+||||+||||+|++|||.+|+++++.+.+|+..+|++||+||||++||+++++++++++. +.++++ |.+||+|
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~~~i~aIg~s 80 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVDSGLKAIGIT 80 (512)
T ss_pred CEEEEecCCCceEEEEECCCCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccccceEEEEEe
Confidence 6899999999999999999999999999999999999999999999999999999999983 334455 8999999
Q ss_pred CC-CceEEE-cCCCCccccCCCCCCCCCcccccCcchHHHHHHHHhc--h--hHHHHHhCCCCCCcChHHHHHHHHHhCC
Q psy10531 77 AT-CSLVAL-DTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT--K--HSVLDTVGGKISPEMETPKLLWLKKNLP 150 (564)
Q Consensus 77 ~q-~s~v~~-D~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~--~--~~i~~~tG~~~~~~~~~~kl~Wl~~~~~ 150 (564)
+| +++++| |++|+|| +|+|+|+|.|+.++++++++. . +.++++||+++++.++++||+|+++|+
T Consensus 81 ~q~~~~v~~dd~~G~pl---------~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~- 150 (512)
T PLN02295 81 NQRETTVAWSKSTGRPL---------YNAIVWMDSRTSSICRRLEKELSGGRKHFVETCGLPISTYFSATKLLWLLENV- 150 (512)
T ss_pred cCcceEEEEECCCCCCc---------ccceeccccchHHHHHHHHhhccchhHHHHHhhCCcCCcccHHHHHHHHHhcC-
Confidence 99 899999 5899999 999999999999999999864 1 346699999999999999999999999
Q ss_pred hhHHhhh----ccccchhhHHHHhhhC-----CccccccccccccccccccCCCCHHHHHHcCCCccccccccccCCccc
Q psy10531 151 DTCWRRA----GLFFDLPDFLTWKLTG-----DETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVK 221 (564)
Q Consensus 151 Pe~~~~~----~~~l~~~dyl~~~LTG-----~~~~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~ 221 (564)
||+|+|+ .+|++++|||.|+||| +.++|.++++.+++||+++++||+++++.+||+.. .| |+++
T Consensus 151 P~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~td~s~As~t~l~D~~~~~W~~ell~~~gi~~~------~l-P~l~ 223 (512)
T PLN02295 151 DAVKEAVKSGDALFGTIDSWLIWNLTGGASGGVHVTDVTNASRTMLMNLKTLDWDKPTLEALGIPAE------IL-PKIV 223 (512)
T ss_pred HHHHHhhhcCceEEEcHHHHHHHHhhCCCCCCeEEeeHHHhHHhhccCcccCcCCHHHHHHcCCCHH------HC-CCcc
Confidence 9999665 4899999999999999 56788887887789999999999999999999963 45 4799
Q ss_pred CCCcccCCCCCHHHHHHcCCCCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhcccCCC-ccCCC-
Q psy10531 222 NPGQPIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKK-VQVPG- 299 (564)
Q Consensus 222 ~~~~~~G~~v~~~~a~~~Gl~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~~~p-~~~~~- 299 (564)
++++++| +|++++++ +|+||++|++|++|+++|+|+ . +|+ +.+++|||+++.+.+..+ ..++.
T Consensus 224 ~~~~~~G-~v~~~~a~-----~g~pV~~g~~D~~aa~~G~G~-~-~g~-------~~~~~GTs~~i~~~~~~~~~~~~~~ 288 (512)
T PLN02295 224 SNSEVIG-TIAKGWPL-----AGVPIAGCLGDQHAAMLGQRC-R-PGE-------AKSTYGTGCFILLNTGEEVVPSKHG 288 (512)
T ss_pred cCcccee-cccccccc-----CCCcEEEEechHHHHHhhCcC-C-CCC-------eEEEEcccceeeeecCCccccCCCC
Confidence 9999999 89988765 489999999999999999998 7 898 899999998766655543 33332
Q ss_pred ceecccccc----cCCeeEeccccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCceEEcc
Q psy10531 300 VWGPYYEVI----LPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWP 375 (564)
Q Consensus 300 ~~~~~~~~~----~~~~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 375 (564)
... .+.+. .++.|.++++++++|.+++|+++.+.. ...|+++++++++.+
T Consensus 289 ~~~-~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~-------------~~~~~~~~~~a~~~~------------ 342 (512)
T PLN02295 289 LLT-TVAYKLGPDAPTNYALEGSVAIAGAAVQWLRDNLGI-------------IKSASEIEALAATVD------------ 342 (512)
T ss_pred ceE-EEEEEecCCCCceEEEechhhhhHHHHHHHHHHcCC-------------CCCHHHHHHHHHhCC------------
Confidence 211 11112 278999999999999999999997641 111444444433221
Q ss_pred CCCCCCCCCCCCCcccceeccCCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeCCCC
Q psy10531 376 DFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTD 455 (564)
Q Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~~~~ 455 (564)
T Consensus 343 -------------------------------------------------------------------------------- 342 (512)
T PLN02295 343 -------------------------------------------------------------------------------- 342 (512)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCcceEEeecccCCCCCCCCCCccccEecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-C-----CCC
Q psy10531 456 TRHSTELTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAA-G-----KTP 529 (564)
Q Consensus 456 ~~~~~~~~~gl~~~P~~~G~r~P~~~~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~-g-----~~~ 529 (564)
+++|++|+|||.|+|+|+||+++||+|+||+.+|+++|+ +||++||+||.+|+++|.|++. + .+
T Consensus 343 ------g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~- 412 (512)
T PLN02295 343 ------DTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHI---ARAVLESMCFQVKDVLDAMRKDAGEEKSHKG- 412 (512)
T ss_pred ------CCCceEEeCcccCCCCCcCCCCCCEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHhhhcccccCCC-
Confidence 367899999999999999999999999999999999999 9999999999999999999865 2 25
Q ss_pred CCCEEEEEcCCcccHHHHHHHhhhcCCeeeccCC
Q psy10531 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563 (564)
Q Consensus 530 ~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~~~~ 563 (564)
+++|+++||++||++|+||+|||+|+||+++++
T Consensus 413 -~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~ 445 (512)
T PLN02295 413 -LFLLRVDGGATANNLLMQIQADLLGSPVVRPAD 445 (512)
T ss_pred -cceEEEeccchhCHHHHHHHHHhcCCceEecCc
Confidence 789999999999999999999999999998763
No 8
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=4.6e-78 Score=662.26 Aligned_cols=417 Identities=23% Similarity=0.376 Sum_probs=362.4
Q ss_pred CcEEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhc--CCCC--CeEEEEEe
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKD--VNPA--QIKGVGVD 76 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~--~~~~--~I~aIgis 76 (564)
|+|+||||+||||+|++|||.+|+++++.+.+++..++.+||+||||++||+++++++++++.. ..+. +|.+||+|
T Consensus 1 ~~~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~I~aIgis 80 (504)
T PTZ00294 1 MKYIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSFKIKAIGIT 80 (504)
T ss_pred CcEEEEEecCCCceEEEEECCCCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccCceEEEEee
Confidence 8899999999999999999999999999999999889999999999999999999999999833 2344 79999999
Q ss_pred CC-CceEEEcC-CCCccccCCCCCCCCCcccccCcchHHHHHHHHhc-h--hHHHHHhCCCCCCcChHHHHHHHHHhCCh
Q psy10531 77 AT-CSLVALDT-NHQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT-K--HSVLDTVGGKISPEMETPKLLWLKKNLPD 151 (564)
Q Consensus 77 ~q-~s~v~~D~-~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~-~--~~i~~~tG~~~~~~~~~~kl~Wl~~~~~P 151 (564)
+| +++|+||+ +|+|| +|+|+|+|+|+.++++++.+. . +.++++||+++++.++++||+|+++|+ |
T Consensus 81 ~q~~~~v~~D~~~g~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~-P 150 (504)
T PTZ00294 81 NQRETVVAWDKVTGKPL---------YNAIVWLDTRTYDIVNELTKKYGGSNFFQKITGLPISTYFSAFKIRWMLENV-P 150 (504)
T ss_pred cCcceEEEEECCCCCCc---------ccceeecchhhHHHHHHHHhhcCcchHHHHhhCCcCCccchHHHHHHHHhcC-H
Confidence 99 99999987 69999 999999999999999999875 2 456799999999999999999999999 9
Q ss_pred hHHhhhcc----ccchhhHHHHhhhC--CccccccccccccccccccCCCCHHHHHHcCCCccccccccccCCcccCCCc
Q psy10531 152 TCWRRAGL----FFDLPDFLTWKLTG--DETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQ 225 (564)
Q Consensus 152 e~~~~~~~----~l~~~dyl~~~LTG--~~~~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~~~~~ 225 (564)
++|+++++ +++++|||.|+||| +.++|.++++.+++||+++++|++++++.+||+.. .|| +|+++++
T Consensus 151 ~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~d~s~As~tgl~D~~~~~W~~~ll~~~gi~~~------~LP-~v~~~~~ 223 (504)
T PTZ00294 151 AVKDAVKEGTLLFGTIDTWLIWNLTGGKSHVTDVTNASRTFLMNIKTLKWDEELLNKFGIPKE------TLP-EIKSSSE 223 (504)
T ss_pred HHHHhhhcCCeEEEcHHHHHHHHhcCCceEEEEhhhhHHhhccCcccCccCHHHHHHhCCCHH------HCC-CccCCcc
Confidence 99997665 88999999999999 88888888777889999999999999999999963 565 7999999
Q ss_pred ccCCCCCHHHHHHcCCCCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhccc-CCCccCCC-ceec
Q psy10531 226 PIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALS-AKKVQVPG-VWGP 303 (564)
Q Consensus 226 ~~G~~v~~~~a~~~Gl~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~-~~p~~~~~-~~~~ 303 (564)
++| +|++ +.+|+++|+||++|++|++|+++|+|++. +|+ +.+++|||+++...+ +++..++. .+.
T Consensus 224 ~~G-~l~~---~~~~~~~g~pV~~g~~D~~aa~~G~g~~~-~g~-------~~~~~GTs~~~~~~~~~~~~~~~~~~~~- 290 (504)
T PTZ00294 224 NFG-TISG---EAVPLLEGVPITGCIGDQQAALIGHGCFE-KGD-------AKNTYGTGCFLLMNTGTEIVFSKHGLLT- 290 (504)
T ss_pred ccC-ccch---hhcCCCCCCcEEEEecHHHHHHHhCcCCC-CCc-------eEEeeccceEEEEeeCCccccCCCCceE-
Confidence 999 8994 46778899999999999999999999987 888 899999998765444 44554443 221
Q ss_pred cccccc----CCeeEeccccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCceEEccCCCC
Q psy10531 304 YYEVIL----PNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHG 379 (564)
Q Consensus 304 ~~~~~~----~~~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 379 (564)
..++.. ++.|.+++++.++|.+++|+++.+.. ...|+++++++++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~-------------~~~~~~~~~~a~~~~---------------- 341 (504)
T PTZ00294 291 TVCYQLGPNGPTVYALEGSIAVAGAGVEWLRDNMGL-------------ISHPSEIEKLARSVK---------------- 341 (504)
T ss_pred EEEEEecCCCCcEEEEechhhhhHHHHHHHHHHhCC-------------CCCHHHHHHHHHhCC----------------
Confidence 112221 45899999999999999999997641 112445555443221
Q ss_pred CCCCCCCCCcccceeccCCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeCCCCCCcc
Q psy10531 380 NRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTDTRHS 459 (564)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~~~~~~~~ 459 (564)
T Consensus 342 -------------------------------------------------------------------------------- 341 (504)
T PTZ00294 342 -------------------------------------------------------------------------------- 341 (504)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcceEEeecccCCCCCCCCCCccccEecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCEEEEEc
Q psy10531 460 TELTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHA-AGKTPAISTLLVSG 538 (564)
Q Consensus 460 ~~~~~gl~~~P~~~G~r~P~~~~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~-~g~~~~~~~i~~~G 538 (564)
+++|++|+|||.|+|+|+||+++||+|+|++.+|+++|+ +||++||+||.+|+++|.|++ .|.+ +++|+++|
T Consensus 342 --g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~i---~rAvlEgia~~~r~~~~~l~~~~g~~--~~~i~~~G 414 (504)
T PTZ00294 342 --DTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHI---VRAALEAIALQTNDVIESMEKDAGIE--LNSLRVDG 414 (504)
T ss_pred --CCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhCCC--cceEEEec
Confidence 367999999999999999999999999999999999999 999999999999999999987 4777 89999999
Q ss_pred CCcccHHHHHHHhhhcCCeeeccCC
Q psy10531 539 GLAKNPLYVQTHADVTGCNVLCPQE 563 (564)
Q Consensus 539 G~a~s~~~~q~~Adv~g~~v~~~~~ 563 (564)
|+++|++|+||+||++|+||++++.
T Consensus 415 G~a~s~~w~Qi~Adv~g~pV~~~~~ 439 (504)
T PTZ00294 415 GLTKNKLLMQFQADILGKDIVVPEM 439 (504)
T ss_pred ccccCHHHHHHHHHHhCCceEecCc
Confidence 9999999999999999999998764
No 9
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-77 Score=655.97 Aligned_cols=424 Identities=29% Similarity=0.465 Sum_probs=380.7
Q ss_pred CcEEEEEEeCccceEEEEEeCC-CCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEeC
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTR-GKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKD--VNPAQIKGVGVDA 77 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~-G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~--~~~~~I~aIgis~ 77 (564)
|+|+||||+|||++|+++||.+ |++++..+.+++..+|++||.||||++||+++++++++++.. ++..+|.||+||+
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~~~I~aI~is~ 82 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESKIDPDAIAAIGISG 82 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcccChhhceEEEEec
Confidence 4699999999999999999999 899999999999999999999999999999999999999843 5678999999999
Q ss_pred C-CceEEEcCCCCccccCCCCCCCCCcccccCcchHHHHHHHHhc--hhHHHHHhCCCCCCcChHHHHHHHHHhCChhHH
Q psy10531 78 T-CSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCW 154 (564)
Q Consensus 78 q-~s~v~~D~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~--~~~i~~~tG~~~~~~~~~~kl~Wl~~~~~Pe~~ 154 (564)
| |+++++|++|+|| +|+|+|+|+|+.++++++.+. .++.+..||+++.+.++++||+|+++|+ ||+|
T Consensus 83 ~~~g~vllD~~g~~L---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~t~~~~~~~~t~~kL~Wl~~~~-P~~~ 152 (502)
T COG1070 83 QGHGLVLLDANGEPL---------RPAILWNDTRAAEEVEELEERLGGEALYARTGLQAMPGFTAPKLLWLKENE-PDLF 152 (502)
T ss_pred cccceEEECCCCCCc---------cccceecchhhHHHHHHHHhhccchhhhhhcCCCcCccccHHHHHHHHhcC-cHHH
Confidence 8 9999999999999 999999999999999999986 3577888999999999999999999999 9999
Q ss_pred hhhccccchhhHHHHhhhCCccccccccccccccccccCCCCHHHHHHcCCCccccccccccCCcccCCCcccCCCCCHH
Q psy10531 155 RRAGLFFDLPDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTE 234 (564)
Q Consensus 155 ~~~~~~l~~~dyl~~~LTG~~~~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~~~~~~~G~~v~~~ 234 (564)
+|+++|++++|||.|+|||+.+++.++++++++||+++++|+.++|+.+|+++ .. .| |+++++++++| .|+++
T Consensus 153 ~k~~~il~~~dyl~~rLTG~~~~e~s~as~t~l~d~~~~~w~~~~l~~~gl~~-~~----~l-p~vv~~g~~~G-~l~~e 225 (502)
T COG1070 153 AKAAKILLIKDYLRYRLTGEFATEISDASGTGLLDIRTRKWDWELLAALGLPE-RD----LL-PPVVEPGEVLG-TLTPE 225 (502)
T ss_pred HhhhheechHHHHHHHHhCCcccccccccccccccccccccCHHHHHHcCCCh-HH----hC-CCccCccceec-cccHH
Confidence 99999999999999999999999999999999999999999999999999994 11 45 58999999999 99999
Q ss_pred HHHHcCCCCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhcccCCCccCCCceecccccccCCeeE
Q psy10531 235 VARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQVPGVWGPYYEVILPNTHL 314 (564)
Q Consensus 235 ~a~~~Gl~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 314 (564)
+|+++||++++||++|++|.+++++|+|+.+ +|+ +..++||+..+...+++|..++......+++..++.|.
T Consensus 226 ~A~~~Gl~~~~pV~~G~~D~~~a~lg~g~~~-~g~-------~~~~~gts~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (502)
T COG1070 226 AAEELGLPAGTPVVVGGGDNAAAALGAGAVD-PGD-------VSSSTGTSGVVRAATDKPLDDPRGSIYTFCLGLPGWFI 297 (502)
T ss_pred HHHHhCCCCCCeEEECCchHHHHhccCCCcC-CCc-------EEEEeccccEEeeeccccccCCccceeeecccCCCeEE
Confidence 9999999999999999999999999999998 887 89999999998888888776665444445566688898
Q ss_pred eccccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCceEEccCCCCCCCCCCCCCccccee
Q psy10531 315 LESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMIC 394 (564)
Q Consensus 315 ~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 394 (564)
..+...++|.+++|+++.+.. ...+.++..++...+
T Consensus 298 ~~~~~~~~~~~l~w~~~~~~~-------------~~~~~~~~~~~~~~~------------------------------- 333 (502)
T COG1070 298 VMGANNTGGWLLEWLRELFGL-------------AESYPELLEEALAVP------------------------------- 333 (502)
T ss_pred EEEEecccHHHHHHHHHHhcc-------------ccCcHHHHHHHHhcc-------------------------------
Confidence 999999999999999998752 112333333322211
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeCCCCCCcccccCcceEEeecccC
Q psy10531 395 GLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTDTRHSTELTADFHVWPDFHG 474 (564)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~~~P~~~G 474 (564)
...++.+++|+|||+|
T Consensus 334 ----------------------------------------------------------------~~~~~~~l~f~p~l~~ 349 (502)
T COG1070 334 ----------------------------------------------------------------APAGAIGLLFLPYLSG 349 (502)
T ss_pred ----------------------------------------------------------------CCCCCCCcEEeccccC
Confidence 1124689999999999
Q ss_pred CCCCCCCCCccccEecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCEEEEEcCCcccHHHHHHHhhh
Q psy10531 475 NRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLAKNPLYVQTHADV 553 (564)
Q Consensus 475 ~r~P~~~~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~-g~~~~~~~i~~~GG~a~s~~~~q~~Adv 553 (564)
||.|++++.+|+.|+|++..|+++|+ +||++||++|.++++++.|++. +.+ +++|+++||+|||++|+||+||+
T Consensus 350 er~p~~~~~~r~~~~g~~~~~~~~~l---~ravlEgva~~l~~~~~~l~~~~g~~--~~~i~~~GGgars~~w~Qi~Ad~ 424 (502)
T COG1070 350 ERGPHADPAARGGFVGLTLPHTRAHL---ARAVLEGVAFALADGLEALEELGGKP--PSRVRVVGGGARSPLWLQILADA 424 (502)
T ss_pred CcCCCCCccceeEEEccccccCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCC--ccEEEEECCcccCHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999997 667 88999999999999999999999
Q ss_pred cCCeeeccC
Q psy10531 554 TGCNVLCPQ 562 (564)
Q Consensus 554 ~g~~v~~~~ 562 (564)
+|+||.++.
T Consensus 425 ~g~~v~~~~ 433 (502)
T COG1070 425 LGLPVVVPE 433 (502)
T ss_pred cCCeeEecC
Confidence 999999875
No 10
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=2.7e-77 Score=651.05 Aligned_cols=412 Identities=19% Similarity=0.206 Sum_probs=359.1
Q ss_pred cEEEEEEeCccceEEEEEeCCCCEEEEEEeecc--ccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCC-
Q psy10531 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIA--LWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVDAT- 78 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~--~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis~q- 78 (564)
+|+||||+||||+|+++||.+|+++++.+.+++ ...+.+||+||||++||+++++++++++.+....+|.+||||+|
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~~~~~I~~I~is~~~ 81 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSELTECHIRGITVTTFG 81 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCccceEEEEEeccc
Confidence 589999999999999999999999999999976 45678999999999999999999999985444567999999998
Q ss_pred CceEEEcCCCCccccCCCCCCCCCcccccCcchHHHHHHHHhc--hhHHHHHhCCCCCCcChHHHHHHHHHhCChhHHhh
Q psy10531 79 CSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRR 156 (564)
Q Consensus 79 ~s~v~~D~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~--~~~i~~~tG~~~~~~~~~~kl~Wl~~~~~Pe~~~~ 156 (564)
++++++|++|+|| +|+|+|+|+|+.++++++++. .++++++||+++.+.++++||+|+++|+ |++|+|
T Consensus 82 ~~~v~~D~~G~pl---------~p~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~-P~~~~~ 151 (470)
T PRK10331 82 VDGALVDKQGNLL---------YPIISWKCPRTAAVMENIERYISAQQLQQISGVGAFSFNTLYKLVWLKENH-PQLLEQ 151 (470)
T ss_pred cceEEECCCcCCc---------cCceeecCCCcHHHHHHHHHhcCHHHHHhhhCCCccccchHHHHHHHHHhC-HHHHHH
Confidence 8999999999999 999999999999999999875 3578999999999999999999999999 999999
Q ss_pred hccccchhhHHHHhhhCCccccccccccccccccccCCCCHHHHHHcCCCccccccccccCCcccCCCcccCCCCCHHHH
Q psy10531 157 AGLFFDLPDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVA 236 (564)
Q Consensus 157 ~~~~l~~~dyl~~~LTG~~~~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~~~~~~~G~~v~~~~a 236 (564)
+++|++++|||+|||||+.++|.++++.+++||+++++|++++++.+||++. .|| +++++++++| +|++++|
T Consensus 152 ~~~~l~~~dyl~~~LTG~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~------~lP-~i~~~g~~~G-~v~~~~a 223 (470)
T PRK10331 152 AHAWLFISSLINHRLTGEFTTDITMAGTSQMLDIQQRDFSPEILQATGLSRR------LFP-RLVEAGEQIG-TLQPSAA 223 (470)
T ss_pred hhhhcCHHHHHHHhhcCccccchhhccceeeeecccCCCCHHHHHHcCCCHH------HCC-Cccccccccc-ccCHHHH
Confidence 9999999999999999999888888888889999999999999999999973 465 7999999999 9999999
Q ss_pred HHcCCCCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhcccCCCccCCCc--eec-ccccccCCee
Q psy10531 237 RALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQVPGV--WGP-YYEVILPNTH 313 (564)
Q Consensus 237 ~~~Gl~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~~~p~~~~~~--~~~-~~~~~~~~~~ 313 (564)
+++||++|+||++|++|++|+++|+|+ . +|+ +++++|||.++..++++|..+... ... +.....++.|
T Consensus 224 ~~~GL~~g~pV~~g~~D~~aa~~g~g~-~-~g~-------~~~~~GT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (470)
T PRK10331 224 ALLGLPVGIPVISAGHDTQFALFGSGA-G-QNQ-------PVLSSGTWEILMVRSAQVDTSLLSQYAGSTCELDSQSGLY 294 (470)
T ss_pred HHhCCCCCCeEEEccccHHHHHhCCCC-C-CCC-------EEEecchhhhheeecCCCcccccccccccceeccccCcee
Confidence 999999999999999999999999996 5 787 899999999988888776654321 010 1112335566
Q ss_pred EeccccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCceEEccCCCCCCCCCCCCCcccce
Q psy10531 314 LLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMI 393 (564)
Q Consensus 314 ~~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 393 (564)
..++.... |.+++|+++++.. + ...|+.|++++++.+
T Consensus 295 ~~~~~~~~-g~~~~W~~~~~~~-----------~-~~~y~~l~~~a~~~~------------------------------ 331 (470)
T PRK10331 295 NPGMQWLA-SGVLEWVRKLFWT-----------A-ETPYQTMIEEARAIP------------------------------ 331 (470)
T ss_pred eechhhHH-HHHHHHHHHHhcc-----------c-CchHHHHHHHHhcCC------------------------------
Confidence 55443444 4489999997641 1 246888887775443
Q ss_pred eccCCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeCCCCCCcccccCcceEEeeccc
Q psy10531 394 CGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTDTRHSTELTADFHVWPDFH 473 (564)
Q Consensus 394 ~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~~~P~~~ 473 (564)
++++|++|+|+|.
T Consensus 332 -------------------------------------------------------------------~g~~gl~~~p~~~ 344 (470)
T PRK10331 332 -------------------------------------------------------------------PGADGVKMQCDLL 344 (470)
T ss_pred -------------------------------------------------------------------CCCCceEeccccc
Confidence 1478999999999
Q ss_pred CCCCCCCCCCccccEecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCEEEEEcCCcccHHHHHHHhh
Q psy10531 474 GNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLAKNPLYVQTHAD 552 (564)
Q Consensus 474 G~r~P~~~~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~-g~~~~~~~i~~~GG~a~s~~~~q~~Ad 552 (564)
|+| ||+|+||+.+|+++|| +||++||+||.+|++++.|++. +.+ +++|+++||++||++|+||+||
T Consensus 345 g~~--------rg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~~~~--~~~i~~~GGga~s~~w~Qi~Ad 411 (470)
T PRK10331 345 ACQ--------NAGWQGVTLNTTRGHF---YRAALEGLTAQLKRNLQVLEKIGHFK--ASELLLVGGGSRNALWNQIKAN 411 (470)
T ss_pred ccC--------ceeEECCCCCcCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCC--CceEEEEcccccCHHHHHHHHH
Confidence 987 9999999999999999 9999999999999999999886 446 8999999999999999999999
Q ss_pred hcCCeeeccCC
Q psy10531 553 VTGCNVLCPQE 563 (564)
Q Consensus 553 v~g~~v~~~~~ 563 (564)
|+|+||++++.
T Consensus 412 vlg~pV~~~~~ 422 (470)
T PRK10331 412 MLDIPIKVLDD 422 (470)
T ss_pred hcCCeeEecCc
Confidence 99999988763
No 11
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=2e-77 Score=659.58 Aligned_cols=428 Identities=22% Similarity=0.280 Sum_probs=370.3
Q ss_pred CcEEEEEEeCccceEEEEEeCCCCEEEEEEeecccc--CCCCCccccCHHHHHHHHHHHHHHHHh--cCCCCCeEEEEEe
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALW--CPKPQLYEQSSEDIWNSVCLAIRDVTK--DVNPAQIKGVGVD 76 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~--~~~~g~~eqd~~~~~~~i~~~l~~l~~--~~~~~~I~aIgis 76 (564)
|+|+||||+||||+|+++||.+|++++..+.+|+.. .+.+||+||||++||+++++++++++. +..+++|.+||+|
T Consensus 2 m~~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~~~~I~aI~~s 81 (520)
T PRK10939 2 MSYLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIPASDIAAVSAT 81 (520)
T ss_pred CcEEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCCccceEEEEEE
Confidence 689999999999999999999999999999988754 467899999999999999999999983 3455679999999
Q ss_pred CC-CceEEEcCCCCccccCCCCCCCCCcccccCcchHHHHHHHHhc----hhHHHHHhCCCCCCcChHHHHHHHHHhCCh
Q psy10531 77 AT-CSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT----KHSVLDTVGGKISPEMETPKLLWLKKNLPD 151 (564)
Q Consensus 77 ~q-~s~v~~D~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~----~~~i~~~tG~~~~~~~~~~kl~Wl~~~~~P 151 (564)
+| +++++||++|+|| .+ +.|+|+|+.++++++++. .++++++||+++ +.++++||+|+++|+ |
T Consensus 82 ~~~~~~v~~D~~g~pl---------~~-~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~-p 149 (520)
T PRK10939 82 SMREGIVLYDRNGTEI---------WA-CANVDARASREVSELKELHNNFEEEVYRCSGQTL-ALGALPRLLWLAHHR-P 149 (520)
T ss_pred CCcccEEEECCCCCEe---------eC-CcCCCcccHHHHHHHHHhcChHHHHHHHHhCCcC-CcchHHHHHHHHHcC-c
Confidence 99 8999999999999 76 679999999999999874 247899999875 678999999999999 9
Q ss_pred hHHhhhccccchhhHHHHhhhCCccccccccccccccccccCCCCHHHHHHcCCCccccccccccCCcccCCCcccCCCC
Q psy10531 152 TCWRRAGLFFDLPDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGV 231 (564)
Q Consensus 152 e~~~~~~~~l~~~dyl~~~LTG~~~~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~~~~~~~G~~v 231 (564)
++|+|+++|++++|||.|+|||+..+|.++++.+++||+++++|++++++.+||++. .| |+++++++++| .|
T Consensus 150 e~~~~~~~~~~~~dyl~~~LTG~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~------~l-P~i~~~g~~~G-~v 221 (520)
T PRK10939 150 DIYRQAHTITMISDWIAYMLSGELAVDPSNAGTTGLLDLVTRDWDPALLEMAGLRAD------IL-PPVKETGTVLG-HV 221 (520)
T ss_pred HHHHHhheEechhHhhhheeeCceeeEhhhhhceeeeecCCCCCCHHHHHHcCCCHH------HC-CCCccCCceee-ee
Confidence 999999999999999999999999888888888889999999999999999999973 45 47999999999 99
Q ss_pred CHHHHHHcCCCCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhcccCCCccCCCceecccccccCC
Q psy10531 232 STEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQVPGVWGPYYEVILPN 311 (564)
Q Consensus 232 ~~~~a~~~Gl~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~~~p~~~~~~~~~~~~~~~~~ 311 (564)
++++|+.+||++|+||++|++|++++++|+|++. +|+ +++++|||.++..++++|..++......+.|..++
T Consensus 222 ~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~-~g~-------~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (520)
T PRK10939 222 TAKAAAETGLRAGTPVVMGGGDVQLGCLGLGVVR-PGQ-------TAVLGGTFWQQVVNLPAPVTDPNMNIRINPHVIPG 293 (520)
T ss_pred cHHHHHhhCCCCCCcEEEeCchHHHHHhhcCccc-CCc-------EEEeecCcceeEEeccccccCccccceeceeeeCC
Confidence 9999999999999999999999999999999988 888 89999999987777777766554221124466788
Q ss_pred eeEeccccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCceEEccCCCCCCCCCCCCCccc
Q psy10531 312 THLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKG 391 (564)
Q Consensus 312 ~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 391 (564)
.|..++.+.++|.+++||++++.. + ....++..+ ...|+.|++++++.+
T Consensus 294 ~~~~~~~~~~~G~~l~W~~~~~~~-~-~~~~~~~~~-~~~~~~l~~~a~~~~---------------------------- 342 (520)
T PRK10939 294 MVQAESISFFTGLTMRWFRDAFCA-E-EKLLAERLG-IDAYSLLEEMASRVP---------------------------- 342 (520)
T ss_pred cceEeeeeccceeeeehHHhhhch-H-HHHHHHhcC-CCHHHHHHHHHhhCC----------------------------
Confidence 999999999999999999998642 1 111222223 356888887776543
Q ss_pred ceeccCCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeCCCCCCcccccCcceEEeec
Q psy10531 392 MICGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTDTRHSTELTADFHVWPD 471 (564)
Q Consensus 392 ~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~~~P~ 471 (564)
++++|+ +||
T Consensus 343 ---------------------------------------------------------------------~g~~gl--~P~ 351 (520)
T PRK10939 343 ---------------------------------------------------------------------VGSHGI--IPI 351 (520)
T ss_pred ---------------------------------------------------------------------CCCCCC--ccc
Confidence 135666 599
Q ss_pred ccCCCCCCCCCCccccEecCCCCC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCEEEEEcCCcccHHHH
Q psy10531 472 FHGNRSPLADVDMKGMICGLTLDS---SETSLVTLYLATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLAKNPLYV 547 (564)
Q Consensus 472 ~~G~r~P~~~~~~~g~~~Gl~~~~---~~~~~~~~~~A~~Egva~~~~~~~~~l~~~-g~~~~~~~i~~~GG~a~s~~~~ 547 (564)
|.|++.|.+++.+||+|+|++.+| +++|+ +||++||+||.+|++++.|++. |.+ +++|+++||++||++|+
T Consensus 352 l~g~~~~~~~~~~~g~f~Gl~~~~~~~~~~~~---~RAvlEgia~~~~~~l~~l~~~~g~~--~~~i~~~GGga~s~~w~ 426 (520)
T PRK10939 352 FSDVMRFKSWYHAAPSFINLSIDPEKCNKATL---FRALEENAAIVSACNLQQIAAFSGVF--PSSLVFAGGGSKGKLWS 426 (520)
T ss_pred ccCCCCCCCCcccceeEEccccCcccCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCC--CcEEEEeCCcccCHHHH
Confidence 999986555568999999999987 89999 9999999999999999999874 777 89999999999999999
Q ss_pred HHHhhhcCCeeeccCC
Q psy10531 548 QTHADVTGCNVLCPQE 563 (564)
Q Consensus 548 q~~Adv~g~~v~~~~~ 563 (564)
||+|||+|+||++++.
T Consensus 427 Qi~ADvlg~pV~~~~~ 442 (520)
T PRK10939 427 QILADVTGLPVKVPVV 442 (520)
T ss_pred HHHHHhcCCeeEEecc
Confidence 9999999999998863
No 12
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=6.2e-77 Score=613.61 Aligned_cols=415 Identities=23% Similarity=0.393 Sum_probs=361.3
Q ss_pred CcEEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEeCC
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVDAT 78 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~q 78 (564)
|+|+++||.||||+|+++||.+|++++..+.+++.++|++||+||||+++|+++..++++++ .++.+.+|.+||||+|
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaaIGITNQ 83 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAAIGITNQ 83 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEEEEeecc
Confidence 47999999999999999999999999999999999999999999999999999999999987 5678899999999999
Q ss_pred -CceEEEcC-CCCccccCCCCCCCCCcccccCcchHHHHHHHHhc--hhHHHHHhCCCCCCcChHHHHHHHHHhCChhHH
Q psy10531 79 -CSLVALDT-NHQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCW 154 (564)
Q Consensus 79 -~s~v~~D~-~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~--~~~i~~~tG~~~~~~~~~~kl~Wl~~~~~Pe~~ 154 (564)
+++|+||+ .|+|| +|+|.|||+|+.+.|++|.+. .+.+.++||..+.|+|+..|+.|+.+|. |...
T Consensus 84 RETtvvWdk~tG~Pi---------~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~dpYFSatKi~WiLdnv-~g~r 153 (499)
T COG0554 84 RETTVVWDKETGKPI---------YNAIVWQDRRTADICEELKADGYEERIREKTGLVLDPYFSATKIKWILDNV-PGAR 153 (499)
T ss_pred ceeEEEEeCCCCCCc---------ccceeeeccchHHHHHHHHhcchhhhhhhhcCCccCCCccchhhhHHHhhC-hhhh
Confidence 89999997 69999 999999999999999999987 3568899999999999999999999999 9888
Q ss_pred hhhc----cccchhhHHHHhhhCC--ccccccccccccccccccCCCCHHHHHHcCCCccccccccccCCcccCCCcccC
Q psy10531 155 RRAG----LFFDLPDFLTWKLTGD--ETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIG 228 (564)
Q Consensus 155 ~~~~----~~l~~~dyl~~~LTG~--~~~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~~~~~~~G 228 (564)
+|+. .|.++++||.|+|||. +++|+++++.|+|||+++.+||++||+.||||+ .++|++.++.++.|
T Consensus 154 ~~ae~Gel~fGTiDtWLiw~LTgg~~h~TD~sNASRT~L~ni~~l~WD~elL~il~Ip~-------~~LPev~~ss~~~G 226 (499)
T COG0554 154 ERAEKGELLFGTIDTWLIWKLTGGKVHVTDYSNASRTMLFNIHSLEWDDELLELLGIPR-------SMLPEVRPSSEIYG 226 (499)
T ss_pred hHhhcCCeEEecchhhheeeccCCceeccccchhHHHhcccccccCCCHHHHHHhCCCh-------HhCccccccccccc
Confidence 8874 5889999999999994 557888888888999999999999999999998 45569999999999
Q ss_pred CCCCHHHHHHcCCCCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhccc-CCCccCCC-ceecccc
Q psy10531 229 HGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALS-AKKVQVPG-VWGPYYE 306 (564)
Q Consensus 229 ~~v~~~~a~~~Gl~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~-~~p~~~~~-~~~~~~~ 306 (564)
.... . .+...+||...+||||||.+|.||+. ||+ +..+.||.+.+.+.+ ++|+.+++ +.....
T Consensus 227 -~t~~---~--~~g~~vPI~g~~GDQQAALfGq~c~~-pG~-------~K~TYGTG~F~l~ntG~~~~~S~~~LLtTIa- 291 (499)
T COG0554 227 -VTGI---G--FLGAEVPITGVAGDQQAALFGQGCFE-PGM-------AKNTYGTGCFLLMNTGEKPVRSENGLLTTIA- 291 (499)
T ss_pred -cccc---c--ccCCceeeccccchhHHHHhhcccCC-cCc-------cccccccceeeeeccCCccccCCCCceeEEE-
Confidence 5543 1 23367999999999999999999998 999 788899988777655 45666665 322211
Q ss_pred cccC--CeeEeccccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCceEEccCCCCCCCCC
Q psy10531 307 VILP--NTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPL 384 (564)
Q Consensus 307 ~~~~--~~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 384 (564)
..++ -.|..||.+..+|.+++|+++.+... ....+.+.++.+.+
T Consensus 292 ~~l~gk~~YALEGsif~aGaavqWLrd~L~~i-------------~~a~~~e~~A~~~~--------------------- 337 (499)
T COG0554 292 WGLDGKVTYALEGSIFVAGAAVQWLRDGLGLI-------------DDASDSEELAESVE--------------------- 337 (499)
T ss_pred eccCCeEEEEEecceeehhhHHHHHHHhcCcc-------------CchhHHHHHHhccC---------------------
Confidence 1223 36999999999999999999965421 11223333333221
Q ss_pred CCCCcccceeccCCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeCCCCCCcccccCc
Q psy10531 385 ADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTDTRHSTELTA 464 (564)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 464 (564)
.++
T Consensus 338 -----------------------------------------------------------------------------~~~ 340 (499)
T COG0554 338 -----------------------------------------------------------------------------DNG 340 (499)
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 268
Q ss_pred ceEEeecccCCCCCCCCCCccccEecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCEEEEEcCCccc
Q psy10531 465 DFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLAKN 543 (564)
Q Consensus 465 gl~~~P~~~G~r~P~~~~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~-g~~~~~~~i~~~GG~a~s 543 (564)
|++|+|.|.|..+||||+++||+|+||+..++++|+ .||++|++||.+|+++++|++. +.. ++++++.||.++|
T Consensus 341 gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~~hi---~RA~LEsiayQ~~dv~~aM~~d~~~~--~~~LrvDGG~s~n 415 (499)
T COG0554 341 GVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHI---ARATLESIAYQTRDVLEAMEKDSGIK--LTRLRVDGGASRN 415 (499)
T ss_pred ceEEEcccccCCCCCcCcccceeEEeeCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEEcCccccc
Confidence 999999999999999999999999999999999999 8899999999999999999874 556 8999999999999
Q ss_pred HHHHHHHhhhcCCeeeccCC
Q psy10531 544 PLYVQTHADVTGCNVLCPQE 563 (564)
Q Consensus 544 ~~~~q~~Adv~g~~v~~~~~ 563 (564)
+++||.+||++|+||+++..
T Consensus 416 ~~lmQfqADilg~~V~Rp~~ 435 (499)
T COG0554 416 NFLMQFQADILGVPVERPVV 435 (499)
T ss_pred hhHHHHHHHHhCCeeecccc
Confidence 99999999999999999864
No 13
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=1.5e-76 Score=618.96 Aligned_cols=459 Identities=48% Similarity=0.827 Sum_probs=409.7
Q ss_pred CcEEEEEEeCccceEEEEEeCC-CCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEeC
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTR-GKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVDA 77 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~-G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~ 77 (564)
|+|+||||+||.|.|+++||.. |++|+.+.+||+...+.++.+||+++++|++++.++++++ +++++.+|++|||++
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~gIGvDa 81 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVVGIGVDA 81 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEcc
Confidence 5799999999999999999986 9999999999999999999999999999999999999998 678888999999999
Q ss_pred CCceEEEcCCCCccccCCCCCCCCCcccccCcchHHHHHHHHhchhHHHHHhCCCCCCcChHHHHHHHHHhCChhHHhhh
Q psy10531 78 TCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRA 157 (564)
Q Consensus 78 q~s~v~~D~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~i~~~tG~~~~~~~~~~kl~Wl~~~~~Pe~~~~~ 157 (564)
++|+|++|++|+||...+++....++|+|+|+|+.+++++++...++++.+.|..++|.+..|||+|+++|. |++|+|+
T Consensus 82 TcSlvv~d~~g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in~~~~~~L~~~GG~~SpEm~~PKlmwl~~~~-p~~~~~a 160 (544)
T COG1069 82 TCSLVVIDRDGNPLAVLPEFPNNPNVILWMDHRAVEEAEEINATCHPVLDYYGGKISPEMMIPKLMWLKREA-PAVWERA 160 (544)
T ss_pred eeeeEEECCCCCeeccCCCCCCCCceEEeccchHHHHHHHHHhhchHHHHhhCCccChhhhHHHHHHHHhhC-hHHHHHh
Confidence 999999999999999988877766899999999999999999987789999999999999999999999999 9999999
Q ss_pred ccccchhhHHHHhhhCCcccccccccccccccc-ccCCCCHHHHHHcCCCccccccccccCCcccCCCcccCCCCCHHHH
Q psy10531 158 GLFFDLPDFLTWKLTGDETQSLCSLVCKWTYDA-YDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVA 236 (564)
Q Consensus 158 ~~~l~~~dyl~~~LTG~~~~s~as~s~~~l~d~-~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~~~~~~~G~~v~~~~a 236 (564)
.+|+.+.|||.|+|||....|.++++++|+|.. +++-|++++++.+|++.+.... ++|+.++++.++.+| ++++++|
T Consensus 161 ~~~fdl~D~l~~~ltG~~~Rs~Ct~~~Kw~~~~~~~~~~~~~~f~~ig~~~l~~~~-~~l~~~i~~~g~~vg-~Lt~e~A 238 (544)
T COG1069 161 AHIFDLADWLTWKLTGSIARSRCTAGCKWNWLEHEGGLWSADFFDKIGLDDLRELD-SKLPEDIVPAGEPVG-GLTPEAA 238 (544)
T ss_pred hhhhhHHHHHHHHhhcchhhccccceeeeeeeccccCCCCHHHHHhcCchhhhccc-ccCCcccccCCcccc-ccCHHHH
Confidence 999999999999999999999999999999998 5556999999999998654422 479999999999999 9999999
Q ss_pred HHcCCCCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhcccCCCccCCCceecccccccCCeeEec
Q psy10531 237 RALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQVPGVWGPYYEVILPNTHLLE 316 (564)
Q Consensus 237 ~~~Gl~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 316 (564)
+++||++++-|.+|..|.+++++|+++.. |+. +....|||+|.+..+++|.+.+++|++++..++||.|.+|
T Consensus 239 ~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~-~~~-------l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~E 310 (544)
T COG1069 239 QELGLPEGTVVSAGIIDAHAGAVGVGGAQ-PGS-------LAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYE 310 (544)
T ss_pred HHhCCCCCcEEeccceeccccccccccCC-CCe-------EEEEeccceEEEEecCCceecCccccccccccCcchhhhc
Confidence 99999999999999999999999998876 776 9999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCceEEccCCCCCCCCCCCCCcccceecc
Q psy10531 317 SGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGL 396 (564)
Q Consensus 317 ~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 396 (564)
++++.+|.+++||.+..+...|......+.+ .+.|+.+++.++.+.
T Consensus 311 gGQSatG~l~dhl~~~h~~~~e~~~~~~~~~-~~~~~~~~~~~~~l~--------------------------------- 356 (544)
T COG1069 311 GGQSATGDLLDHLVRTHPAPLEQLAAHPKDG-EEIYESLAQRLELLT--------------------------------- 356 (544)
T ss_pred ccchhhhHHHHHHHHhCCcccchhhccchhh-hHHHHHHHHHHHHHH---------------------------------
Confidence 9999999999999998643222111111111 233444433332221
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeCCCCCCcccccCcceEEeecccCCC
Q psy10531 397 TLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTDTRHSTELTADFHVWPDFHGNR 476 (564)
Q Consensus 397 ~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~~~P~~~G~r 476 (564)
+. .+...++..+++++|+|+|+|
T Consensus 357 ---------------------~~------------------------------------~~~~~~l~~~l~~l~~f~GNR 379 (544)
T COG1069 357 ---------------------EA------------------------------------AAAIPPLASGLHVLDWFNGNR 379 (544)
T ss_pred ---------------------hh------------------------------------HhccCcccCCcEecccccCCc
Confidence 00 122344689999999999999
Q ss_pred CCCCCCCccccEecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhcCC
Q psy10531 477 SPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGC 556 (564)
Q Consensus 477 ~P~~~~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~ 556 (564)
+|+.||++||+|+|++++|++.+|+.+|||.+|+++|++|+++|.|++.|.+ |++|+++||..||++|||+.||++|+
T Consensus 380 sP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~--Id~l~~sGG~~KN~llmql~aDvtg~ 457 (544)
T COG1069 380 SPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIA--IDTLFASGGIRKNPLLMQLYADVTGR 457 (544)
T ss_pred CCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCe--eeEEEecCCcccCHHHHHHHHHhcCC
Confidence 9999999999999999999999888889999999999999999999999999 99999999999999999999999999
Q ss_pred eeeccCC
Q psy10531 557 NVLCPQE 563 (564)
Q Consensus 557 ~v~~~~~ 563 (564)
||+++..
T Consensus 458 ~v~i~~s 464 (544)
T COG1069 458 PVVIPAS 464 (544)
T ss_pred eEEeecc
Confidence 9998754
No 14
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=6.1e-76 Score=644.04 Aligned_cols=413 Identities=24% Similarity=0.392 Sum_probs=360.2
Q ss_pred cEEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHh--cCCCCCeEEEEEeCC-
Q psy10531 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTK--DVNPAQIKGVGVDAT- 78 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~--~~~~~~I~aIgis~q- 78 (564)
+|+||||+|||++|+++||.+|+++++.+++++..+|.+||+|||+++||+++++++++++. ++.+++|.+|||++|
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~aIgis~~~ 80 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDIAAIGITNQR 80 (493)
T ss_pred CeEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhheeEEEEecCc
Confidence 48999999999999999999999999999999988999999999999999999999999983 345678999999998
Q ss_pred CceEEEcCC-CCccccCCCCCCCCCcccccCcchHHHHHHHHhc--hhHHHHHhCCCCCCcChHHHHHHHHHhCChhHHh
Q psy10531 79 CSLVALDTN-HQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWR 155 (564)
Q Consensus 79 ~s~v~~D~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~--~~~i~~~tG~~~~~~~~~~kl~Wl~~~~~Pe~~~ 155 (564)
+++|++|++ |+|| +|+|+|+|+|+.++++++.+. .++++++||+++++.++++||+|+++|+ ||+|+
T Consensus 81 ~~~v~~D~~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wlk~~~-Pe~~~ 150 (493)
T TIGR01311 81 ETTVVWDKATGKPL---------YNAIVWQDRRTASICEELKAEGYGEFIREKTGLPLDPYFSATKLRWLLDNV-PGVRE 150 (493)
T ss_pred ceEEEEECCCCcCc---------ccceeecccchHHHHHHHHHhcchHHHHHHhCCcCCccchHHHHHHHHhcC-HHHHH
Confidence 899999976 9999 999999999999999999875 3579999999999999999999999999 99999
Q ss_pred hhcc----ccchhhHHHHhhhC--CccccccccccccccccccCCCCHHHHHHcCCCccccccccccCCcccCCCcccCC
Q psy10531 156 RAGL----FFDLPDFLTWKLTG--DETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGH 229 (564)
Q Consensus 156 ~~~~----~l~~~dyl~~~LTG--~~~~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~~~~~~~G~ 229 (564)
|+++ |++++|||.|+||| +..+|.++++.+++||+++++|++++++.+||++. +|| +++++++++|
T Consensus 151 ~~~~~~~~~~~~~dyl~~~LtG~~~~~~d~s~As~t~l~d~~~~~W~~~~l~~~gi~~~------~lP-~l~~~g~~~G- 222 (493)
T TIGR01311 151 AAERGELLFGTIDTWLIWNLTGGKVHVTDVTNASRTMLFNIHTLDWDDELLELFGIPRE------ILP-EVRSSSEVYG- 222 (493)
T ss_pred HhhcCCeEEECHhHhhhhhccCCceEEeccchhhhhhcccccccccCHHHHHHcCCCHH------HCC-CccCCcccee-
Confidence 8864 78999999999999 88888888887889999999999999999999963 565 7999999999
Q ss_pred CCCHHHHHHcCCCCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhccc-CCCccCCC-ceeccccc
Q psy10531 230 GVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALS-AKKVQVPG-VWGPYYEV 307 (564)
Q Consensus 230 ~v~~~~a~~~Gl~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~-~~p~~~~~-~~~~~~~~ 307 (564)
.++++ |+++|+||++|++|++|+++|+|++. +|+ +++++|||.++...+ +.+..++. ... .+++
T Consensus 223 ~v~~~-----~l~~g~pV~~g~~D~~aa~~G~g~~~-~g~-------~~~~~GTs~~~~~~~~~~~~~~~~~~~~-~~~~ 288 (493)
T TIGR01311 223 YTDPG-----LLGAEIPITGVLGDQQAALFGQACFK-PGQ-------AKNTYGTGCFLLMNTGEKPVISKHGLLT-TVAY 288 (493)
T ss_pred ccccc-----ccCCCceEEEecccHHHHHhhCcCCC-CCc-------eEEeecccceEeeecCCccccCCCCceE-EEEE
Confidence 89987 67799999999999999999999988 898 999999998755443 34444432 211 1222
Q ss_pred ccCC---eeEeccccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCceEEccCCCCCCCCC
Q psy10531 308 ILPN---THLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPL 384 (564)
Q Consensus 308 ~~~~---~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 384 (564)
..++ .|.+++++.++|.+++|+++.+.. ...|+++++++++.
T Consensus 289 ~~~~~~~~~~~~g~~~~~g~~~~W~~~~~~~-------------~~~~~~~~~~a~~~---------------------- 333 (493)
T TIGR01311 289 QLGGKKPVYALEGSVFVAGAAVQWLRDNLKL-------------IKHAAESEALARSV---------------------- 333 (493)
T ss_pred ecCCCCceEEEEeehhhhHHHHHHHHHHhCC-------------CCCHHHHHHHHhcC----------------------
Confidence 3343 499999999999999999998641 11244554443321
Q ss_pred CCCCcccceeccCCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeCCCCCCcccccCc
Q psy10531 385 ADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTDTRHSTELTA 464 (564)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 464 (564)
++++
T Consensus 334 ----------------------------------------------------------------------------~g~~ 337 (493)
T TIGR01311 334 ----------------------------------------------------------------------------EDNG 337 (493)
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 1367
Q ss_pred ceEEeecccCCCCCCCCCCccccEecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCEEEEEcCCccc
Q psy10531 465 DFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLAKN 543 (564)
Q Consensus 465 gl~~~P~~~G~r~P~~~~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~-g~~~~~~~i~~~GG~a~s 543 (564)
|++|+|||.|+|+|+||+++||+|+|++.+|++.|+ +||++||+||.+|++++.|++. |.+ +++|+++||++||
T Consensus 338 g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~g~~--~~~i~~~GGga~s 412 (493)
T TIGR01311 338 GVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHI---ARAALEAIAFQTRDVLEAMEKDAGVE--ITKLRVDGGMTNN 412 (493)
T ss_pred CEEEeCcccCCCCCcCCCCCcEEEECcCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCC--CceEEEecccccC
Confidence 999999999999999999999999999999999999 9999999999999999999874 777 8999999999999
Q ss_pred HHHHHHHhhhcCCeeeccC
Q psy10531 544 PLYVQTHADVTGCNVLCPQ 562 (564)
Q Consensus 544 ~~~~q~~Adv~g~~v~~~~ 562 (564)
++|+||+|||+|+||++++
T Consensus 413 ~~w~Qi~ADv~g~pv~~~~ 431 (493)
T TIGR01311 413 NLLMQFQADILGVPVVRPK 431 (493)
T ss_pred HHHHHHHHHhcCCeeEecC
Confidence 9999999999999999865
No 15
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=1.6e-75 Score=636.18 Aligned_cols=416 Identities=20% Similarity=0.225 Sum_probs=358.5
Q ss_pred cEEEEEEeCccceEEEEEeCCCCEEEEEEeecc--ccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCC-
Q psy10531 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIA--LWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVDAT- 78 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~--~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis~q- 78 (564)
.|+||||+||||+|+++||.+|+++++.+.+++ ...+.+||+||||++||++++++++++..++.+.+|++||+|+|
T Consensus 1 ~~ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~~~~~I~aI~~s~~~ 80 (465)
T TIGR02628 1 EVILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSELTEKHIRGIAVTTFG 80 (465)
T ss_pred CeEEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhhcChhceEEEEEeccc
Confidence 378999999999999999999999999998866 55788999999999999999999999985555567999999998
Q ss_pred CceEEEcCCCCccccCCCCCCCCCcccccCcchHHHHHHHHhc--hhHHHHHhCCCCCCcChHHHHHHHHHhCChhHHhh
Q psy10531 79 CSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRR 156 (564)
Q Consensus 79 ~s~v~~D~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~--~~~i~~~tG~~~~~~~~~~kl~Wl~~~~~Pe~~~~ 156 (564)
++++++|++|+|| +|+|+|+|+|+.++++++.+. .++++++||+++.+.++++||+|+++|+ ||+|+|
T Consensus 81 ~~~v~~D~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~-pe~~~~ 150 (465)
T TIGR02628 81 VDGAPFDKQGNQL---------YPIISWKCPRTAPVMDNIERLLDAQRLYAINGIGAYSFNTLYKLVWLKEHH-PQLFER 150 (465)
T ss_pred cceEEECCCCCCc---------cccccccCcccHHHHHHHHHhhCHHHHHHHhCCCccccchHHHHHHHHHhC-hHHHHH
Confidence 8999999999999 999999999999999999875 3578999999999999999999999999 999999
Q ss_pred hccccchhhHHHHhhhCCccccccccccccccccccCCCCHHHHHHcCCCccccccccccCCcccCCCcccCCCCCHHHH
Q psy10531 157 AGLFFDLPDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVA 236 (564)
Q Consensus 157 ~~~~l~~~dyl~~~LTG~~~~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~~~~~~~G~~v~~~~a 236 (564)
+++|++++|||.|+|||+..+|.++++.+++||+++++|++++|+.+||++. .|| +++++++++| +|++++|
T Consensus 151 ~~~~l~~~dyl~~~LTG~~~~d~s~As~t~l~d~~~~~w~~ell~~~gi~~~------~lP-~l~~~~~~~G-~v~~~~a 222 (465)
T TIGR02628 151 MHKFVFISSMITHRLTGEFTTDITMAGTSMMTDLTQRNWSPQILQALGLSRR------LFP-PLVEAGEQIG-TLQNSAA 222 (465)
T ss_pred HHHhhCcHHHHHHHHhCCcccchhhhhcceeeecCcCCCCHHHHHHcCCCHH------HCC-CcccCCccce-eeCHHHH
Confidence 9999999999999999999988888888889999999999999999999972 465 7999999999 9999999
Q ss_pred HHcCCCCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhcccCCCccCCCceec-c--cccccCCee
Q psy10531 237 RALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQVPGVWGP-Y--YEVILPNTH 313 (564)
Q Consensus 237 ~~~Gl~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~~~p~~~~~~~~~-~--~~~~~~~~~ 313 (564)
+++||++|+||++|++|++++++|+|+ . +|+ +++++|||+++...+++|..++..+.. + +.+..++.|
T Consensus 223 ~~~Gl~~g~pV~~g~~D~~aa~~g~g~-~-~g~-------~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 293 (465)
T TIGR02628 223 AMLGLPVGVPVISAGHDTQFALFGSGA-E-QNQ-------PVLSSGTWEILMARSQQVDTSLLSQYAGSTCELDSQAGLY 293 (465)
T ss_pred HHhCCCCCCCEEecCccHHHHHhccCC-C-CCc-------EEEeccchhhheeccCcCCCCccccccccccccccCCcee
Confidence 999999999999999999999999996 5 787 899999999888888877665532211 1 112335666
Q ss_pred EeccccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCceEEccCCCCCCCCCCCCCcccce
Q psy10531 314 LLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMI 393 (564)
Q Consensus 314 ~~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 393 (564)
.......++| +++|+++.+.. .+ .. + ...|++|++.+++.+
T Consensus 294 ~~~~~~~~g~-~~~W~~~~~~~-~~----~~--~-~~~~~~l~~~a~~~~------------------------------ 334 (465)
T TIGR02628 294 NPAMQWLASG-VLEWVRKLFFT-AE----TP--S-DHYYQMMIEEARLIA------------------------------ 334 (465)
T ss_pred eehhhhhhhh-HHHHHHHHhcc-hh----hc--c-ccHHHHHHHHHHhCC------------------------------
Confidence 6554444555 89999987631 00 00 1 234788887776553
Q ss_pred eccCCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeCCCCCCcccccCcceE-Eeecc
Q psy10531 394 CGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTDTRHSTELTADFH-VWPDF 472 (564)
Q Consensus 394 ~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~-~~P~~ 472 (564)
++++|++ |+|++
T Consensus 335 -------------------------------------------------------------------~g~~gl~~~~p~~ 347 (465)
T TIGR02628 335 -------------------------------------------------------------------NGADGVVNFQCDL 347 (465)
T ss_pred -------------------------------------------------------------------CCCCcceeecccC
Confidence 1367888 88776
Q ss_pred cCCCCCCCCCCccccEecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCEEEEEcCCcccHHHHHHHh
Q psy10531 473 HGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLAKNPLYVQTHA 551 (564)
Q Consensus 473 ~G~r~P~~~~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~-g~~~~~~~i~~~GG~a~s~~~~q~~A 551 (564)
. +.+||+|+|++.+|++.|| +||++||+||.+|+++|.|++. +.+ +++|+++||++||++|+||+|
T Consensus 348 ~--------~~a~g~~~Gl~~~~~~~~l---~rAvlEgia~~~r~~~e~l~~~~~~~--~~~i~~~GGga~s~~w~Qi~A 414 (465)
T TIGR02628 348 L--------SCGQGGIQGLTLNTTRGHI---YRAALEGLTAQLKRNLQMLEQIGQFK--ASELLLVGGGSKNTLWNQIRA 414 (465)
T ss_pred C--------cccceeEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCC--cceEEEecCccCCHHHHHHhh
Confidence 4 5789999999999999999 9999999999999999999886 456 899999999999999999999
Q ss_pred hhcCCeeeccCC
Q psy10531 552 DVTGCNVLCPQE 563 (564)
Q Consensus 552 dv~g~~v~~~~~ 563 (564)
||+|+||++++.
T Consensus 415 dv~g~pV~~~~~ 426 (465)
T TIGR02628 415 NMLDIPVKVVDD 426 (465)
T ss_pred hhcCCeeEeccC
Confidence 999999988763
No 16
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=4.1e-75 Score=636.57 Aligned_cols=417 Identities=27% Similarity=0.435 Sum_probs=376.7
Q ss_pred EEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHh--cCCCCCeEEEEEeCC-Cce
Q psy10531 5 LSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTK--DVNPAQIKGVGVDAT-CSL 81 (564)
Q Consensus 5 LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~--~~~~~~I~aIgis~q-~s~ 81 (564)
||||+|||++|++|+|.+|+++++.+.+++..++.+||.|||+++||+++++++++++. +.++.+|.+||+++| +|+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gIgvs~~~~g~ 80 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDIKGIGISGQMHGL 80 (481)
T ss_pred CceeecCcceEEEEECCCCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCcee
Confidence 68999999999999999999999999999988999999999999999999999999983 345578999999998 999
Q ss_pred EEEcCCCCccccCCCCCCCCCcccccCcchHHHHHHHHhc--hhHHHHHhCCCCCCcChHHHHHHHHHhCChhHHhhhcc
Q psy10531 82 VALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGL 159 (564)
Q Consensus 82 v~~D~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~--~~~i~~~tG~~~~~~~~~~kl~Wl~~~~~Pe~~~~~~~ 159 (564)
|+||++|+|+ .|+++|+|.|..++++++++. .+.+++.+|+...+.++++||+|+++|+ |++|+++.+
T Consensus 81 v~~d~~g~~l---------~~~i~W~D~r~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~kl~wl~~~~-p~~~~~~~~ 150 (481)
T TIGR01312 81 VLLDANGEVL---------RPAILWNDTRTAQECEELEAELGDERVLEITGNLALPGFTAPKLLWVRKHE-PEVFARIAK 150 (481)
T ss_pred EEECCCcCCC---------ccchhhhccchHHHHHHHHHhcCHhHHHHHHCCCCCccchHHHHHHHHHcC-hHHHHHhhe
Confidence 9999999999 999999999999998888765 3578899999999999999999999999 999999999
Q ss_pred ccchhhHHHHhhhCCccccccccccccccccccCCCCHHHHHHcCCCccccccccccCCcccCCCcccCCCCCHHHHHHc
Q psy10531 160 FFDLPDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVARAL 239 (564)
Q Consensus 160 ~l~~~dyl~~~LTG~~~~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~~~~~~~G~~v~~~~a~~~ 239 (564)
|++++|||.|+|||+..++.++++.+++||+++++|++++|+.+||++. .|| +|+++++++| ++++++|+++
T Consensus 151 ~~~~~~yi~~~LtG~~~~d~t~as~tgl~d~~~~~W~~~~l~~~gi~~~------~Lp-~iv~~~~~~G-~v~~~~a~~~ 222 (481)
T TIGR01312 151 VMLPKDYLRYRLTGEYVTEYSDASGTGWFDVAKRAWSKELLDALDLPES------QLP-ELIESSEKAG-TVRPEVAARL 222 (481)
T ss_pred eeCchHHHhhhhcCCeeeeHHHhhcccccccCCCCCCHHHHHHhCCCHH------HCC-CccCCCCeee-eEcHHHHHHh
Confidence 9999999999999999888888888889999999999999999999963 565 7999999999 9999999999
Q ss_pred CCCCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhcccCCCccCCCceecccccccCCeeEecccc
Q psy10531 240 GLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQVPGVWGPYYEVILPNTHLLESGQ 319 (564)
Q Consensus 240 Gl~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (564)
||++|+||++|++|++|+++|+|+.. +|+ +++++|||+++..++++|..++......+++..++.|..++++
T Consensus 223 Gl~~g~pV~~g~~D~~aa~~g~g~~~-~g~-------~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (481)
T TIGR01312 223 GLSAGVPVAAGGGDNAAGAIGTGTVD-PGD-------AMMSLGTSGVVYAVTDKPLPDPAGAVHGFCHALPGGWLPMGVT 294 (481)
T ss_pred CCCCCCeEEecchHHHHHhhCCCccc-CCc-------EEEEecCceEEEEecCCcccCcccceeeeeeecCCceEEEeEe
Confidence 99999999999999999999999888 888 9999999999988888777665433233455668899999999
Q ss_pred CchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCceEEccCCCCCCCCCCCCCcccceeccCCC
Q psy10531 320 SATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLD 399 (564)
Q Consensus 320 ~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 399 (564)
.++|.+++|+++.+.. ..|+.+++++++.+
T Consensus 295 ~~~g~~~~w~~~~~~~--------------~~~~~l~~~~~~~~------------------------------------ 324 (481)
T TIGR01312 295 LSATSSLEWFRELFGK--------------EDVEALNELAEQSP------------------------------------ 324 (481)
T ss_pred hhhHHHHHHHHHHhCC--------------CcHHHHHHHHhcCC------------------------------------
Confidence 9999999999997631 13567777665443
Q ss_pred CCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeCCCCCCcccccCcceEEeecccCCCCCC
Q psy10531 400 SSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTDTRHSTELTADFHVWPDFHGNRSPL 479 (564)
Q Consensus 400 ~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~~~P~~~G~r~P~ 479 (564)
++++|++|+|||.|+|+|+
T Consensus 325 -------------------------------------------------------------~~~~~~~~~p~~~G~r~P~ 343 (481)
T TIGR01312 325 -------------------------------------------------------------PGAEGVTFLPYLNGERTPH 343 (481)
T ss_pred -------------------------------------------------------------CCCCCeEEecccccCCCCC
Confidence 1367999999999999999
Q ss_pred CCCCccccEecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCEEEEEcCCcccHHHHHHHhhhcCCee
Q psy10531 480 ADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLAKNPLYVQTHADVTGCNV 558 (564)
Q Consensus 480 ~~~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~-g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~~v 558 (564)
||+++||+|+|++.+|+++|+ +||++||+||.+|++++.|++. +.+ +++|+++||++||++|+||+||++|+||
T Consensus 344 ~~~~~~g~~~gl~~~~~~~~l---~railEgia~~~~~~~~~l~~~~~~~--~~~i~~~GG~s~s~~~~Q~~Adv~g~pv 418 (481)
T TIGR01312 344 LDPQARGSFIGLTHNTTRADL---TRAVLEGVTFALRDSLDILREAGGIP--IQSIRLIGGGAKSPAWRQMLADIFGTPV 418 (481)
T ss_pred CCCCcceEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCC--cceEEEeccccCCHHHHHHHHHHhCCce
Confidence 999999999999999999999 9999999999999999999885 566 8999999999999999999999999999
Q ss_pred eccCC
Q psy10531 559 LCPQE 563 (564)
Q Consensus 559 ~~~~~ 563 (564)
++++.
T Consensus 419 ~~~~~ 423 (481)
T TIGR01312 419 DVPEG 423 (481)
T ss_pred eecCC
Confidence 98764
No 17
>PLN02669 xylulokinase
Probab=100.00 E-value=1.6e-72 Score=621.57 Aligned_cols=427 Identities=13% Similarity=0.134 Sum_probs=368.3
Q ss_pred cEEEEEEeCccceEEEEEeCCCCEEEEEEeecccc---CCCCCccccCHH----------HHHHHHHHHHHHHH-hcCCC
Q psy10531 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALW---CPKPQLYEQSSE----------DIWNSVCLAIRDVT-KDVNP 67 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~---~~~~g~~eqd~~----------~~~~~i~~~l~~l~-~~~~~ 67 (564)
.|+||||+|||++|+++||.+|+++++++++|+.. ++.+||+||||+ .||++++.+++++. .+.+.
T Consensus 8 ~~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~~~~~~~ 87 (556)
T PLN02669 8 SLFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLAKEKFPF 87 (556)
T ss_pred CeEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHHHcCCCh
Confidence 58999999999999999999999999999999844 445678999998 68899999999987 45566
Q ss_pred CCeEEEEEeCC-CceEEEcC-CCCccccCC-CC---------CCCCCcccccCcchHHHHHHHHhc-h--hHHHHHhCCC
Q psy10531 68 AQIKGVGVDAT-CSLVALDT-NHQPLTISP-TG---------DDSRNVLLWMDHRAVSEADQINAT-K--HSVLDTVGGK 132 (564)
Q Consensus 68 ~~I~aIgis~q-~s~v~~D~-~G~pl~~~~-~~---------~~~~p~i~W~D~Ra~~~~~~l~~~-~--~~i~~~tG~~ 132 (564)
++|+||++|+| |++|+||+ +|+||...- .+ .+.+|+++|+|.|+.++++++++. + ++++++||++
T Consensus 88 ~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg~~~l~~~tG~~ 167 (556)
T PLN02669 88 HKVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGGAAELSKLTGSR 167 (556)
T ss_pred hhEEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCcHHHHHHHHCCc
Confidence 78999999998 99999998 688862111 11 123699999999999999999875 2 5789999999
Q ss_pred CCCcChHHHHHHHHHhCChhHHhhhccccchhhHHHHhhhCCc-cccccccccccccccccCCCCHHHHHHcCCCccccc
Q psy10531 133 ISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDE-TQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQN 211 (564)
Q Consensus 133 ~~~~~~~~kl~Wl~~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~-~~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~ 211 (564)
+++.++.+||+|+++|+ ||+|+|+++|+.++|||.|+|||+. .+|.++++++++||+++++|++++|+.+++... .
T Consensus 168 ~~~~~t~~ki~wl~~~~-Pe~y~~t~~i~~~~dyl~~~LtG~~~~~D~sdasg~~l~Di~~~~Ws~~ll~~~~~~l~-~- 244 (556)
T PLN02669 168 AYERFTGPQIRKIYETQ-PEVYHDTERISLVSSFMASLLVGDYASIDETDGAGMNLMDIEKRCWSKAALEATAPGLE-E- 244 (556)
T ss_pred ccccccHHHHHHHHHhC-hHHHHHHHhhccHHHHHHHhhcCCCccccchhhhhhhhhccccCCcCHHHHHhhCccHH-H-
Confidence 99999999999999999 9999999999999999999999996 588888888889999999999999999964411 1
Q ss_pred cccccCCcccCCCcccCCCCCHHHHHHcCCCCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhccc
Q psy10531 212 GWRAIGNTVKNPGQPIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALS 291 (564)
Q Consensus 212 ~~~~Lpp~i~~~~~~~G~~v~~~~a~~~Gl~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~ 291 (564)
+|| +++++++++| +|++++|+++||++|+||++|++|++|+++|+|++. ||+ +.+++|||.++.+++
T Consensus 245 ---~Lp-~~~~~~~~~G-~v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~g~~~-~g~-------~~~slGTs~~~~~~~ 311 (556)
T PLN02669 245 ---KLG-KLAPAHAVAG-KIHPYFVQRFGFSSNCLVVQWSGDNPNSLAGLTLST-PGD-------LAISLGTSDTVFGIT 311 (556)
T ss_pred ---HCc-CCCCCCccee-eeCHHHHHHhCCCCCCEEEEecchHHHHHhccCCCC-CCe-------EEEEEcccceEEEec
Confidence 676 6999999999 999999999999999999999999999999999988 898 999999999988888
Q ss_pred CCCccCCCceecccccc-cCCeeEeccccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCc
Q psy10531 292 AKKVQVPGVWGPYYEVI-LPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTAD 370 (564)
Q Consensus 292 ~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 370 (564)
+++..++... ++.|. .++.|..++.+.+||.+++|+++.+. ...|+.+++++++.+
T Consensus 312 ~~~~~~~~~~--~~~~~~~~~~y~~~~~~~ngg~~~~w~r~~~~--------------~~~~~~~~~~~~~~~------- 368 (556)
T PLN02669 312 REPQPSLEGH--VFPNPVDPESYMVMLCYKNGSLTREDIRNRCA--------------DGSWDVFNKLLEQTP------- 368 (556)
T ss_pred CCCCCCCCcc--eeeCccCCCCeEEEEEecchHHHHHHHHHHhc--------------cCcHHHHHHHHHhCC-------
Confidence 8776665421 23333 38899999999999999999999763 124666777665442
Q ss_pred eEEccCCCCCCCCCCCCCcccceeccCCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCccee
Q psy10531 371 FHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLT 450 (564)
Q Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~ 450 (564)
T Consensus 369 -------------------------------------------------------------------------------- 368 (556)
T PLN02669 369 -------------------------------------------------------------------------------- 368 (556)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCCCcccccCcceEEeecccCCCCCC----CCCCccccEecCCCC---------CChhhHHHHHHHHHHHHHHHHHH
Q psy10531 451 ISPTDTRHSTELTADFHVWPDFHGNRSPL----ADVDMKGMICGLTLD---------SSETSLVTLYLATIQALAYGTRH 517 (564)
Q Consensus 451 ~~~~~~~~~~~~~~gl~~~P~~~G~r~P~----~~~~~~g~~~Gl~~~---------~~~~~~~~~~~A~~Egva~~~~~ 517 (564)
++++|++++||+.||+.|+ +++.++|.|+|++.+ |++.|+ +||++||++|++|.
T Consensus 369 ----------~g~~g~l~~~~~~~e~~P~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~---~RAvlEg~a~~~r~ 435 (556)
T PLN02669 369 ----------PLNGGKLGFYYKEHEILPPLPVGFHRYILENFSGEALDGLVEEEVGEFDPPSE---VRAIIEGQFLSMRA 435 (556)
T ss_pred ----------CCCCCEEEeeccCcccCCCCCCccchhhhccccCcccccccccccccCCHHHH---HHHHHHHHHHHHHH
Confidence 1367899899999999996 567788999999988 699999 99999999999999
Q ss_pred HHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhcCCeeeccCC
Q psy10531 518 IMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563 (564)
Q Consensus 518 ~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~~~~ 563 (564)
+++.|+ .+.+ +++|+++||+|||++|+||+|||||+||++++.
T Consensus 436 ~~~~l~-~~~~--~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~ 478 (556)
T PLN02669 436 HAERFG-MPVP--PKRIIATGGASANQSILKLIASIFGCDVYTVQR 478 (556)
T ss_pred HHHHHh-CCCC--CcEEEEEcChhcCHHHHHHHHHHcCCCeEecCC
Confidence 999996 3455 789999999999999999999999999998764
No 18
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=1.9e-68 Score=579.23 Aligned_cols=401 Identities=18% Similarity=0.182 Sum_probs=335.0
Q ss_pred EEEEeCccceEEEEEeCC---CCEE-EEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCC-C
Q psy10531 5 LSVDVGTSSVRAALVSTR---GKVS-PIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVDAT-C 79 (564)
Q Consensus 5 LgIDiGTTsvKa~l~d~~---G~il-~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis~q-~ 79 (564)
||||+|||++|++++|.+ |+++ .....+++...+++++.|||++.||+++.++++++... ..+|.+||||+| +
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~--~~~i~~Igis~q~~ 78 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE--GIAPDSIGIDTWGV 78 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc--CCCceEEEEeccce
Confidence 589999999999999997 5666 67788888888999999999999999999999998742 346999999999 8
Q ss_pred ceEEEcCCCCccccCCCCCCCCCcccccCcchHHHHHHHHhc--hhHHHHHhCCCCCCcChHHHHHHHHHhCChhHHhhh
Q psy10531 80 SLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRA 157 (564)
Q Consensus 80 s~v~~D~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~--~~~i~~~tG~~~~~~~~~~kl~Wl~~~~~Pe~~~~~ 157 (564)
++|++|++|+|| +|+|+|+|+|+.++++++.+. .+++|++||+++.+.++++||+|+++|+ |++|+|+
T Consensus 79 ~~v~~D~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~-P~~~~~~ 148 (454)
T TIGR02627 79 DFVLLDQNGQRV---------GDPVSYRDSRTDGVMAQVQSELGKEAIYQRTGIQFLPFNTLYQLRALTEQQ-PDLLEKV 148 (454)
T ss_pred eEEEEcCCCCCc---------cCceecCCCCCHHHHHHHHhhcCHHHHHHHhCCCcCCccHHHHHHHHHHhC-hhHHHHH
Confidence 999999999999 999999999999999999875 3679999999999999999999999999 9999999
Q ss_pred ccccchhhHHHHhhhCCccccccccccccccccccCCCCHHHHHHcCCCccccccccccCCcccCCCcccCCCCCHHHHH
Q psy10531 158 GLFFDLPDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVAR 237 (564)
Q Consensus 158 ~~~l~~~dyl~~~LTG~~~~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~~~~~~~G~~v~~~~a~ 237 (564)
++|++++|||.|||||+.++|.++++.+++||+++++|++++++.+||++. .|| +++++++++| .+++
T Consensus 149 ~~~l~~~dyl~~~LTG~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~------~lP-~l~~~~~~~G-~~~~---- 216 (454)
T TIGR02627 149 AHFLLIPDYLNYRLTGKKVWEYTNATTTQLVNINTDDWDEDLLAYLGVPAA------WFG-RPTHPGNVIG-LWEC---- 216 (454)
T ss_pred HHhCCHHHHHHHheeCCceeeeehhhhcccccCCCCCcCHHHHHHcCCCHH------HcC-CccCCCCeeE-Eeec----
Confidence 999999999999999999988888888889999999999999999999963 565 7999999999 7753
Q ss_pred HcCCCCCCcEEe-ccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhcccCCCccCCCceec--ccccccCCeeE
Q psy10531 238 ALGLNPGTPVSV-SMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQVPGVWGP--YYEVILPNTHL 314 (564)
Q Consensus 238 ~~Gl~~g~pV~~-g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~ 314 (564)
.|+ +++||++ |++|++|+++|+|+.. +|+ +++++|||.++...+++|..++..+.. .+....++.|.
T Consensus 217 -~gl-~g~pVv~~g~~D~~aa~~g~g~~~-~g~-------~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (454)
T TIGR02627 217 -PQG-NQIPVVAVATHDTASAVVAAPLQG-ENA-------AYLSSGTWSLMGFESQTPITNEQALAANITNEGGADGRYR 286 (454)
T ss_pred -ccC-CCCCEEEECCchHHHHHhcCCCCC-CCc-------EEEEEcHHHHhcccCCCCCCCHHHHHhccccccccccEEE
Confidence 477 7899998 8899999999999987 888 999999999988888877766533211 11122356666
Q ss_pred eccccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCceEEccCCCCCCCCCCCCCccccee
Q psy10531 315 LESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMIC 394 (564)
Q Consensus 315 ~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 394 (564)
..+... ++ |+++.+. +.. + ...|+.+.+.+..++
T Consensus 287 ~~~~~~-g~----W~~~~~~------~~~---~-~~~~~~l~~~a~~~p------------------------------- 320 (454)
T TIGR02627 287 VLKNIM-GL----WLLQRVC------RER---D-INDLPALIEQAQALP------------------------------- 320 (454)
T ss_pred eecchh-hh----HHHHHHH------hhh---c-cccHHHHHHHhcCCC-------------------------------
Confidence 654443 33 6655431 001 1 223555554443221
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeCCCCCCcccccCcceEEeecccC
Q psy10531 395 GLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTDTRHSTELTADFHVWPDFHG 474 (564)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~~~P~~~G 474 (564)
.+.|++.|
T Consensus 321 ------------------------------------------------------------------------~~~g~~~~ 328 (454)
T TIGR02627 321 ------------------------------------------------------------------------AFKSIINP 328 (454)
T ss_pred ------------------------------------------------------------------------CCCeeeCC
Confidence 02255689
Q ss_pred CCCCCCCCC-cccc------EecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCEEEEEcCCcccHHH
Q psy10531 475 NRSPLADVD-MKGM------ICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLAKNPLY 546 (564)
Q Consensus 475 ~r~P~~~~~-~~g~------~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~-g~~~~~~~i~~~GG~a~s~~~ 546 (564)
++.|+|||. +++. |+||+.+|+++|+ +||++||+||.+|+++|.|++. +.+ +++|+++||++||++|
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~~~~l---~RAv~Egva~~~r~~~e~l~~~~~~~--~~~i~~~GGga~s~~w 403 (454)
T TIGR02627 329 NDDRFINPENMCEEIQAYCRETNQPIPESDAEL---ARCIFDSLALLYRQVLLELAELRGKP--ISQLHIVGGGSQNAFL 403 (454)
T ss_pred CcccccChhhhHHHHHHHHHHcCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhCCC--cCEEEEECChhhhHHH
Confidence 999999995 5444 5999999999999 9999999999999999999885 666 8999999999999999
Q ss_pred HHHHhhhcCCeeeccC
Q psy10531 547 VQTHADVTGCNVLCPQ 562 (564)
Q Consensus 547 ~q~~Adv~g~~v~~~~ 562 (564)
+||+||++|+||.+..
T Consensus 404 ~Qi~ADvlg~pV~~~~ 419 (454)
T TIGR02627 404 NQLCADACGIRVIAGP 419 (454)
T ss_pred HHHHHHHhCCceEcCC
Confidence 9999999999998754
No 19
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=3.3e-62 Score=531.40 Aligned_cols=389 Identities=16% Similarity=0.141 Sum_probs=319.7
Q ss_pred EEEeCCCCEEEEE---EeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCC-CceEEEcCCCCccc
Q psy10531 17 ALVSTRGKVSPIA---VRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVDAT-CSLVALDTNHQPLT 92 (564)
Q Consensus 17 ~l~d~~G~il~~~---~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis~q-~s~v~~D~~G~pl~ 92 (564)
+-+|.+|+.+... +.++ ..++.+++.++||+.||+++.++++++... ..+|.+||||+| +++++||++|+||
T Consensus 3 ~~~~~~~~~~~~~e~~r~~~-~~~~~~~~~~~d~~~~~~~i~~~l~~~~~~--~~~I~~Igis~q~~~~v~lD~~G~pL- 78 (471)
T PRK10640 3 ARYERECRSLTLREIHRFNN-GLHSQDGFDTWDVDSLESAIRLGLNKVCEE--GIRIDSIGIDTWGVDYVLLDKQGQRV- 78 (471)
T ss_pred eEEcCCCceEEEEEEEecCC-CCeeeCCeeEECHHHHHHHHHHHHHHHhhc--CCCccEEEEcCCcccEEEECCCCCCc-
Confidence 3456556555443 2222 234678999999999999999999988642 467999999999 8999999999999
Q ss_pred cCCCCCCCCCcccccCcchHHHHHHHHhc--hhHHHHHhCCCCCCcChHHHHHHHHHhCChhHHhhhccccchhhHHHHh
Q psy10531 93 ISPTGDDSRNVLLWMDHRAVSEADQINAT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWK 170 (564)
Q Consensus 93 ~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~--~~~i~~~tG~~~~~~~~~~kl~Wl~~~~~Pe~~~~~~~~l~~~dyl~~~ 170 (564)
+|+|+|+|+|+.++++++.+. .+++|++||+++.+.++++||+|+++|+ |++|+|+++|++++|||.|+
T Consensus 79 --------~pai~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~-P~~~~~~~~~l~~~dyl~~~ 149 (471)
T PRK10640 79 --------GLPVSYRDSRTDGVMAQAQQQLGKRDIYRRSGIQFLPFNTLYQLRALTEQQ-PELIAQVAHALLIPDYFSYR 149 (471)
T ss_pred --------CCceeccCCCCHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHHHHHHhC-hHHHHHhhHeecHHHHHHHH
Confidence 999999999999999999875 3679999999999999999999999999 99999999999999999999
Q ss_pred hhCCccccccccccccccccccCCCCHHHHHHcCCCccccccccccCCcccCCCcccCCCCCHHHHHHcCCCCCCcEEe-
Q psy10531 171 LTGDETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVARALGLNPGTPVSV- 249 (564)
Q Consensus 171 LTG~~~~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~~~~~~~G~~v~~~~a~~~Gl~~g~pV~~- 249 (564)
|||+.+++.++++.+++||+++++||+++++.+||+.. +|| +++++++++| .+++++ | .++||++
T Consensus 150 LTG~~~~d~s~as~t~l~d~~~~~W~~ell~~~Gi~~~------~LP-~lv~~~~~~G-~v~~~~----g--~g~pVv~~ 215 (471)
T PRK10640 150 LTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGAPKA------WFG-RPTHPGNVIG-HWICPQ----G--NEIPVVAV 215 (471)
T ss_pred HhCCcceeecHhhhccccCCCcCCcCHHHHHHcCCCHH------HcC-CCcCCCccce-eeeccc----C--CCCCEEEe
Confidence 99999988888888889999999999999999999963 565 7999999999 887663 5 6899998
Q ss_pred ccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhcccCCCccCCCc-eecccc-cccCCeeEeccccCchhHHHH
Q psy10531 250 SMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQVPGV-WGPYYE-VILPNTHLLESGQSATGKLLD 327 (564)
Q Consensus 250 g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~~~p~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~G~~l~ 327 (564)
|++|++|+++|+|+.. +|+ +++++|||+++..++++|..++.. ...+.. ...++.|..+..+. | +
T Consensus 216 g~~D~~aa~~g~g~~~-~g~-------~~~s~GT~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~--g---~ 282 (471)
T PRK10640 216 ASHDTASAVIASPLND-SDA-------AYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIM--G---L 282 (471)
T ss_pred CCCcHHHHhhccCCCC-CCe-------EEEEeccHhhhheecCCCcCCHHHHHhccCccCCCCceEEEecchh--H---H
Confidence 6899999999999987 888 999999999999999888765532 111111 13467776655333 3 8
Q ss_pred HHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCceEEccCCCCCCCCCCCCCcccceeccCCCCCchhHHH
Q psy10531 328 HIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVT 407 (564)
Q Consensus 328 w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 407 (564)
|+++++. +.+. ...|+++.+++++.+
T Consensus 283 W~~~~~~------~~~~----~~~~~~l~~~a~~~~-------------------------------------------- 308 (471)
T PRK10640 283 WLLQRVL------QERQ----ITDLPALIAATAALP-------------------------------------------- 308 (471)
T ss_pred HHHHHHH------HHhc----cCCHHHHHHHHHhCC--------------------------------------------
Confidence 9988652 1111 123666655443321
Q ss_pred HHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeCCCCCCcccccCcceEEeecccCCCCCCCCC-Cccc
Q psy10531 408 LYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTDTRHSTELTADFHVWPDFHGNRSPLADV-DMKG 486 (564)
Q Consensus 408 ~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~~~P~~~G~r~P~~~~-~~~g 486 (564)
+++|++ +| .|+|. ||| ++||
T Consensus 309 ------------------------------------------------------g~~gli-~p--~ger~--~~~~~arg 329 (471)
T PRK10640 309 ------------------------------------------------------ACRFLI-NP--NDDRF--INPPSMCS 329 (471)
T ss_pred ------------------------------------------------------CCCcee-CC--Ccccc--cCchhhHH
Confidence 367776 58 79994 675 8999
Q ss_pred cEecCCCCC------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCEEEEEcCCcccHHHHHHHhhhcCCeee
Q psy10531 487 MICGLTLDS------SETSLVTLYLATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVL 559 (564)
Q Consensus 487 ~~~Gl~~~~------~~~~~~~~~~A~~Egva~~~~~~~~~l~~~-g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~ 559 (564)
+|+|++..| +++|+ +||++||+||.+|++++.|++. +.+ +++|+++||++||++|+||+|||+|+||.
T Consensus 330 ~~~gl~~~~G~~~~~~~~~l---~RAvlEgva~~~r~~l~~l~~~~g~~--~~~i~~~GGga~s~~w~Qi~ADvlg~pV~ 404 (471)
T PRK10640 330 EIQAACRETAQPVPESDAEL---ARCIFDSLALLYADVLHELAQLRGEP--FSQLHIVGGGCQNALLNQLCADACGIRVI 404 (471)
T ss_pred HHHHHHHHhCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCC--cceEEEECChhhhHHHHHHHHHHhCCCee
Confidence 998877776 99999 9999999999999999999975 666 89999999999999999999999999998
Q ss_pred ccCC
Q psy10531 560 CPQE 563 (564)
Q Consensus 560 ~~~~ 563 (564)
+.+.
T Consensus 405 ~~~~ 408 (471)
T PRK10640 405 AGPV 408 (471)
T ss_pred eCCh
Confidence 7653
No 20
>KOG2517|consensus
Probab=100.00 E-value=1e-59 Score=497.19 Aligned_cols=414 Identities=32% Similarity=0.509 Sum_probs=330.9
Q ss_pred cEEEEEEeCccceEEEEEe-CCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHH-----hcCCCCCeEEEEE
Q psy10531 2 EYLLSVDVGTSSVRAALVS-TRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT-----KDVNPAQIKGVGV 75 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d-~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~-----~~~~~~~I~aIgi 75 (564)
+.++|||+||||+|++||| .+|+++..++.+++...|++||+||||.++|+++++||+++. .+.....+.+||+
T Consensus 6 ~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~igv 85 (516)
T KOG2517|consen 6 PVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIGV 85 (516)
T ss_pred ceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEEE
Confidence 5789999999999999999 689999999999999999999999999999999999999875 1223445888999
Q ss_pred eCC-CceEEEcC-CCCccccCCCCCCCCCcccccCcchHHHHHHHHhch-hHH---HHHhCCCCCCcChHHHHHHHHHhC
Q psy10531 76 DAT-CSLVALDT-NHQPLTISPTGDDSRNVLLWMDHRAVSEADQINATK-HSV---LDTVGGKISPEMETPKLLWLKKNL 149 (564)
Q Consensus 76 s~q-~s~v~~D~-~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~-~~i---~~~tG~~~~~~~~~~kl~Wl~~~~ 149 (564)
++| ++.|+|++ .|+|+ +++|.|+|.|+..++++++... ... ..++|.++++++..+||+||++|.
T Consensus 86 ~~qr~~~v~w~~~tg~p~---------~niI~W~D~Ra~~~~~~ln~~~~~~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn~ 156 (516)
T KOG2517|consen 86 VNQREGSVLWNKRTGEPL---------TNIIVWMDHRAVSEVEELNSSTPSNLFLPRPYCGLPVSPEFSAPKLRWLLDNV 156 (516)
T ss_pred EecCCceEEeecCCCCcc---------cceEEeeccccHHHHHHHHhcCCchhcccccccCCccccccchheehHHhhhC
Confidence 999 89999996 59999 9999999999999999999862 222 368999999999999999999999
Q ss_pred ChhH-HhhhccccchhhHHHHhh---hCC---ccccccccccccccccccCCCCHHHHHHcCCCccccccccccCCcccC
Q psy10531 150 PDTC-WRRAGLFFDLPDFLTWKL---TGD---ETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKN 222 (564)
Q Consensus 150 ~Pe~-~~~~~~~l~~~dyl~~~L---TG~---~~~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~~ 222 (564)
|++ +.+.+..+..++|+.|++ |+. ..++..+++.+++||..+..||..+++.+|+|. .++|++..
T Consensus 157 -~~~~~~~~~~~~~~~~~~twl~~~~t~~~~~~~~d~~Nas~t~~f~~~~~~wd~~~~~f~~lp~-------~llp~i~s 228 (516)
T KOG2517|consen 157 -PEVLKAKEEGGFDLGTFDTWLATGLTGRSSCHCTDVTNASRTGLFNTESGLWDLKLLDFFGLPL-------NLLPDIRS 228 (516)
T ss_pred -HHHHHHHHhcccchhhhhhheeecCCccceeccccccccccccccchhhhhhhhhhhhhhCCCc-------ccCCcccc
Confidence 998 677777666666555555 444 234556667777999999999999999999997 45578999
Q ss_pred CCcccCCCCCHHHHHHcCCCCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhcccCC-Ccc-CCCc
Q psy10531 223 PGQPIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAK-KVQ-VPGV 300 (564)
Q Consensus 223 ~~~~~G~~v~~~~a~~~Gl~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~~~-p~~-~~~~ 300 (564)
+++++| ++. +..+++.+|+||.+..+|++|+++|..+.+ +|+ +...+||+..+..++.. +.. .++.
T Consensus 229 ~~e~~g-~~~---~~~~~~~~g~~vs~~lgDq~Aa~vg~~~~~-~g~-------~~~t~~t~~Fl~~~~G~~~~~s~~g~ 296 (516)
T KOG2517|consen 229 SSEVYG-TTA---AGDLGLLEGTPVSSCLGDQQASMVGQMCYK-PGC-------AKLTYGTGCFLLGVWGPYFDASQPGL 296 (516)
T ss_pred cccccc-ccc---ccccccccCcceeechhhHHHHHHhHhhhc-Ccc-------eEEeeCCceEEeeccCCccccccCcc
Confidence 999999 554 456778999999999999999999999987 788 88889998665544321 111 1222
Q ss_pred eecccccccCC---eeEeccccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHH---HHhhcccCCCCCceEEc
Q psy10531 301 WGPYYEVILPN---THLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNH---VIDTQHSTELTADFHVW 374 (564)
Q Consensus 301 ~~~~~~~~~~~---~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~ 374 (564)
+.....-...+ .|..++....++..++|+++.+. .|+++++ ++.+.
T Consensus 297 ~~~~g~q~g~g~~~~~~leg~~a~~~~~v~w~~d~~~----------------i~~~~~~i~~~~~~~------------ 348 (516)
T KOG2517|consen 297 LTTVGGQSGTGKLLDHALEGHAAFAGALVQWLRDNLG----------------IIEELNEIEKLAAEV------------ 348 (516)
T ss_pred ceecccccccccHHHHHHhcccchHHHHHHHHHHhhh----------------HHHHHHHHHHHHHhh------------
Confidence 21100000001 14444445555555555555432 1222222 22111
Q ss_pred cCCCCCCCCCCCCCcccceeccCCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeCCC
Q psy10531 375 PDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPT 454 (564)
Q Consensus 375 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~~~ 454 (564)
T Consensus 349 -------------------------------------------------------------------------------- 348 (516)
T KOG2517|consen 349 -------------------------------------------------------------------------------- 348 (516)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccCcceEEeecccCCCCCCCCCCccccEecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCE
Q psy10531 455 DTRHSTELTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAG-KTPAIST 533 (564)
Q Consensus 455 ~~~~~~~~~~gl~~~P~~~G~r~P~~~~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g-~~~~~~~ 533 (564)
..+.+++|+|.|.|.|+|||||++||+|+|++.+++..|+ .||++|+++|++|+++|.|++.+ .+ +++
T Consensus 349 ------~~t~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~ts~~hi---a~A~leai~fqtr~Il~am~~~~~~~--i~~ 417 (516)
T KOG2517|consen 349 ------NLTSDVHFVPDFHGLRSPYADPTARGVIIGLSQDTSKEHL---ARAALEAIAFQTREILEAMERDGGHP--IST 417 (516)
T ss_pred ------cccCceEEEccccCCCCCCCCcccceeEEEecCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCC--cce
Confidence 1378999999999999999999999999999999999999 77999999999999999999877 46 999
Q ss_pred EEEEcCCcccHHHHHHHhhhcCCeeeccCC
Q psy10531 534 LLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563 (564)
Q Consensus 534 i~~~GG~a~s~~~~q~~Adv~g~~v~~~~~ 563 (564)
++++||.+||++++|++||++|+||+++++
T Consensus 418 L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~ 447 (516)
T KOG2517|consen 418 LRVCGGLSKNPLLMQLQADILGLPVVRPQD 447 (516)
T ss_pred eeeccccccCHHHHHHHHHHhCCccccccc
Confidence 999999999999999999999999999874
No 21
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=100.00 E-value=2.8e-51 Score=409.69 Aligned_cols=240 Identities=35% Similarity=0.677 Sum_probs=219.8
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHh--cCCCCCeEEEEEeCC-C
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTK--DVNPAQIKGVGVDAT-C 79 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~--~~~~~~I~aIgis~q-~ 79 (564)
|+||||+||||+|++++|.+|++++..+++++...+.+|++|||+++||+.++++++++.+ +....+|++|+||+| +
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~is~~~~ 80 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQIKAIGISGQGH 80 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGEEEEEEEE-SS
T ss_pred CEEEEEEcccceEEEEEeCCCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCcccceeEEEEeccccC
Confidence 7999999999999999999999999999999999999999999999999999999999984 346789999999998 8
Q ss_pred ceEEEcCCCCccccCCCCCCCCCcccccCcchHHHHHHHHhc--hhHHHHHhCCCCCCcChHHHHHHHHHhCChhHHhhh
Q psy10531 80 SLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRA 157 (564)
Q Consensus 80 s~v~~D~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~--~~~i~~~tG~~~~~~~~~~kl~Wl~~~~~Pe~~~~~ 157 (564)
++|++|++|+|+ +|+|+|+|+|+.++++++++. .+++++.||.++++.++++||+|+++|+ |+.|+|+
T Consensus 81 ~~v~~D~~~~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~-p~~~~~~ 150 (245)
T PF00370_consen 81 GLVLLDKDGKPL---------RPAILWMDTRAAEEAEELNEEGSPEEIYEKTGLPLSPGYPLAKLLWLKENE-PEIFEKA 150 (245)
T ss_dssp EEEEEETTSSBS---------SCEE-TT-CTTHHHHHHHHHHTHHHHHHHHHSS-SSTTSHHHHHHHHHHHS-HHHHHHH
T ss_pred Ccceeccccccc---------cccccccccchhhHHHHHHhhcCcceeeeeccccccccchHHHHHHHHHhC-chhhhhh
Confidence 999999999999 999999999999999999885 4789999999999999999999999999 9999999
Q ss_pred ccccchhhHHHHhhhCCccccccccccccccccccCCCCHHHHHHcCCCccccccccccCCcccCCCcccCCCCCHHHHH
Q psy10531 158 GLFFDLPDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVAR 237 (564)
Q Consensus 158 ~~~l~~~dyl~~~LTG~~~~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~~~~~Lpp~i~~~~~~~G~~v~~~~a~ 237 (564)
++|++++|||.|+|||+..++.++++.+++||+++++|++++++++||++. .|| +|+++++++| ++++++|+
T Consensus 151 ~~~~~~~dyl~~~LtG~~~~d~s~as~tgl~d~~~~~w~~~~l~~~gi~~~------~lP-~i~~~g~~~G-~~~~~~a~ 222 (245)
T PF00370_consen 151 AKFLTLSDYLAYKLTGRAATDYSNASRTGLYDIRTGQWDEELLEALGIPEE------LLP-EIVPPGEIIG-TLTPEAAK 222 (245)
T ss_dssp HEEEEHHHHHHHHHHSC-EEEHHHHCTSSSEETTTTEE-HHHHHHTTSGGG------GSC-EEE-TTSEEE-EEEHHHHH
T ss_pred hhcccHHHHHHhhccccccccccchhccccccccccccCHHHHHhhCCChh------hCC-cEecCCCeeE-EECHHHHH
Confidence 999999999999999999888888888889999999999999999999973 465 8999999999 99999999
Q ss_pred HcCCCCCCcEEeccchhHhhHhh
Q psy10531 238 ALGLNPGTPVSVSMIDAHAGALA 260 (564)
Q Consensus 238 ~~Gl~~g~pV~~g~~D~~aaa~g 260 (564)
++||++|+||++|++|++|+++|
T Consensus 223 ~~Gl~~~~pV~~g~~D~~aa~lG 245 (245)
T PF00370_consen 223 ELGLPEGTPVIAGGGDQAAAALG 245 (245)
T ss_dssp HHTSTTTEEEEEEEEHHHHHHHH
T ss_pred HhCCCCCCEEEEEchHHHHhhcC
Confidence 99999999999999999999986
No 22
>KOG2531|consensus
Probab=100.00 E-value=1.4e-39 Score=331.29 Aligned_cols=435 Identities=15% Similarity=0.148 Sum_probs=331.4
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCC---------CC--ccccCHH-HHHHHHHHHHHHHH-hcCCCCC
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPK---------PQ--LYEQSSE-DIWNSVCLAIRDVT-KDVNPAQ 69 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~---------~g--~~eqd~~-~~~~~i~~~l~~l~-~~~~~~~ 69 (564)
.+||+|++|+.+|++++|.+.+++.++.+.+....|+ +| ..-..|- +|.+|+.-.+.++. ++.+..+
T Consensus 10 ~fLG~DlSTQqlKaviids~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDlll~kl~~~~~d~~k 89 (545)
T KOG2531|consen 10 SFLGFDLSTQQLKAVIIDSNLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLLLDKLREAGFDLSK 89 (545)
T ss_pred eeeeeecccceeEEEEEcCCccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 5899999999999999999999999999988765442 12 3333455 78888887887776 6677789
Q ss_pred eEEEEEeCC-CceEEEcCCCCccccCCC----------C-CCCCCcccccCcchHHHHHHHHhc---hhHHHHHhCCCCC
Q psy10531 70 IKGVGVDAT-CSLVALDTNHQPLTISPT----------G-DDSRNVLLWMDHRAVSEADQINAT---KHSVLDTVGGKIS 134 (564)
Q Consensus 70 I~aIgis~q-~s~v~~D~~G~pl~~~~~----------~-~~~~p~i~W~D~Ra~~~~~~l~~~---~~~i~~~tG~~~~ 134 (564)
|.||+-++| |+.|.|-+.++-...++. . ......-.|+|..++.+|++++.. .+++.++||.+.+
T Consensus 90 V~aiSGagQQHGsVyWs~ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG~~~la~LTGSRAy 169 (545)
T KOG2531|consen 90 VMAISGAGQQHGSVYWSKGAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGGAQELAKLTGSRAY 169 (545)
T ss_pred hhhhcccccccceeeehhhhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhccHHHHHHhhcchhh
Confidence 999999997 999999876544333332 1 224456689999999999999986 3689999999999
Q ss_pred CcChHHHHHHHHHhCChhHHhhhccccchhhHHHHhhhCCcc-ccccccccccccccccCCCCHHHHHHcCCCccccccc
Q psy10531 135 PEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDET-QSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGW 213 (564)
Q Consensus 135 ~~~~~~kl~Wl~~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~-~s~as~s~~~l~d~~~~~W~~ell~~~gi~~~~~~~~ 213 (564)
.-++.|||+-+.+.+ ||.|+++.+|-.+++|+...|-|..+ ++.++.+++.|+|++++.|+.++|+++.-+ +.+
T Consensus 170 ~RFTGpQIrKi~~~~-pe~Ye~TerISLVSsFlaSlllG~~a~id~sDgsGMNL~dIr~k~ws~~~L~~~apd-L~~--- 244 (545)
T KOG2531|consen 170 ERFTGPQIRKIYQQE-PEAYEKTERISLVSSFLASLLLGSYAPIDESDGSGMNLLDIRKKKWSKALLDACAPD-LEE--- 244 (545)
T ss_pred hhcccHHHHHHHHhC-hHhhhccceeehHHHHHHHHHhccccceecccccCchHHHHhhhhhhHHHHhhhChh-HHH---
Confidence 999999999999999 99999999999999999999999987 788889998899999999999999998522 111
Q ss_pred cccCCcccCCCcccCCCCCHHHHHHcCCCCCCcEEeccchhHhhHhhhhccCCCCCCCcCCCcEEEEEccchhhhcccCC
Q psy10531 214 RAIGNTVKNPGQPIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAK 293 (564)
Q Consensus 214 ~~Lpp~i~~~~~~~G~~v~~~~a~~~Gl~~g~pV~~g~~D~~aaa~g~g~~~~~G~~~~~~~~~~~s~GTs~~~~~~~~~ 293 (564)
+|. ..+++..+.| +|++...+++|+++++.|++-.||..++..|+ -+. +++ +.+|+|||..+.+.+++
T Consensus 245 -KL~-~pv~~~~~~G-~I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL-~l~-~~d-------l~iSLGTSdTv~m~t~~ 312 (545)
T KOG2531|consen 245 -KLG-KPVPPMSIAG-TISKYFVKRYGFPPDCKVVPSTGDNPSSLAGL-PLR-PGD-------LLISLGTSDTVFMVTKE 312 (545)
T ss_pred -HhC-CCCCcccccc-chhhhhHhhcCCCCCCEEEecCCCChHHhhCc-ccc-CCc-------eEEEecCcceEEEEcCC
Confidence 676 6788999999 89999999999999999999999999999887 455 787 99999999999999999
Q ss_pred CccCCCceeccccc-ccCCeeEeccccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhcccCCCCCceE
Q psy10531 294 KVQVPGVWGPYYEV-ILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFH 372 (564)
Q Consensus 294 p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 372 (564)
+.+.++. ++++| +.++.|..+-..-+|+..-+-+++... ..+|+..++.+...+...++.--+
T Consensus 313 ~~p~~eg--Hvf~hP~~~~~YM~mlCfkNgSL~RE~ir~~~~--------------~~sWd~Fne~L~~t~~gn~g~~g~ 376 (545)
T KOG2531|consen 313 YHPSPEG--HVFCHPTDPNHYMGMLCFKNGSLTRERIRNESA--------------NGSWDKFNEILDSTPSGNNGNLGV 376 (545)
T ss_pred CCCCCCc--ceeccCCCccceEEEEEecCChHHHHHHhhccc--------------CCCHHHHHHHhccCcCCCCCceeE
Confidence 8877763 34556 457789998888888877776665421 346888888776655222111011
Q ss_pred EccCCCCCCCCCCCCCcccceeccCCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccchhhhhhhhhcCCcceeeC
Q psy10531 373 VWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTIS 452 (564)
Q Consensus 373 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~~~~~~~a~~~~~~~~~~~ 452 (564)
+||+ +| +++
T Consensus 377 ~f~~--~E---------------------------------------------------------------------IvP 385 (545)
T KOG2531|consen 377 YFPE--RE---------------------------------------------------------------------IVP 385 (545)
T ss_pred eccc--cc---------------------------------------------------------------------ccC
Confidence 1110 00 011
Q ss_pred CCCCCcccccCcceEEeecccCCCCCCCCCCccccEecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy10531 453 PTDTRHSTELTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAIS 532 (564)
Q Consensus 453 ~~~~~~~~~~~~gl~~~P~~~G~r~P~~~~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~ 532 (564)
+.-+ +..-..+-+ .|... -++ |+....+|.+- .||++||.+...|...+-|.-.-.+ .+
T Consensus 386 ~~~~-----G~~R~~~~~------~~~~~--~~~---~v~kf~~p~~e---~rAlvEgQ~L~~r~~~~~lg~~~~~--~~ 444 (545)
T KOG2531|consen 386 SVPK-----GTLRFIFEN------KELSA--ERI---EVAKFSDPEIE---ARALVEGQFLSKRARAEPLGFKSNP--PT 444 (545)
T ss_pred CCCc-----cceEEEecC------Cccch--hhc---ccccCCCchHH---HHHHHHHhHhHhhhhhccccCCCCC--Cc
Confidence 0000 111111111 11100 011 44444567888 7899999999999888877532224 68
Q ss_pred EEEEEcCCcccHHHHHHHhhhcCCeeeccC
Q psy10531 533 TLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562 (564)
Q Consensus 533 ~i~~~GG~a~s~~~~q~~Adv~g~~v~~~~ 562 (564)
+|+++||.|+|....|++|||+|+||.+.+
T Consensus 445 rilvtGGAS~N~~Ilq~iadVf~apVy~~~ 474 (545)
T KOG2531|consen 445 RILVTGGASRNEAILQIIADVFGAPVYTIE 474 (545)
T ss_pred eEEEecCccccHHHHHHHHHHhCCCeEeec
Confidence 999999999999999999999999998753
No 23
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=99.95 E-value=5.6e-28 Score=233.40 Aligned_cols=179 Identities=31% Similarity=0.479 Sum_probs=144.4
Q ss_pred EEEEEccchhhhcccCCCccC-CCceecccccccCCeeEeccccCchhHHHHHHHhhCCChHHHHHhhccCCch-hHHHH
Q psy10531 277 LGLICGTSTCHMALSAKKVQV-PGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELA-PVIQY 354 (564)
Q Consensus 277 ~~~s~GTs~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~-~~~~~ 354 (564)
+++++|||+++..++++|+.+ ++.+.++..+..++.|.+++..+++|..++|+++.+.. .+++.+++.. +.+..
T Consensus 1 a~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~wl~~~~~~----~~~~~~~~~~~~~~~~ 76 (198)
T PF02782_consen 1 AVVSLGTSGFIMVVSSEPVISPPGFWNPFADHVIPGRYLLEGASSSGGNALEWLRQQLGF----RESLSDEEEIYEDLAE 76 (198)
T ss_dssp EEEEESSSEEEEEEETSTTTTSSSSEEEEEEETSEEEEEEEEEESSSHHHHHHHHHTSTS----HHHCSSTTHHHHHHHH
T ss_pred CEEEehhhhHHhhEeCccccCCCeeEEeecCcCCCCeEEEeeccccccchhHHHHHhhcc----chhhhhhhhccchHHH
Confidence 478999999999999998844 45555554445678999999999999999999998642 1222222201 11111
Q ss_pred HHHHHhhcccCCCCCceEEccCCCCCCCCCCCCCcccceeccCCCCCchhHHHHHHHHHHHHHhhhcccCccEEeccccc
Q psy10531 355 LNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVD 434 (564)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~ggg~~ 434 (564)
+++. ..
T Consensus 77 ~~~~--~~------------------------------------------------------------------------ 82 (198)
T PF02782_consen 77 LEAA--AS------------------------------------------------------------------------ 82 (198)
T ss_dssp HHHH--HT------------------------------------------------------------------------
T ss_pred HHhh--hc------------------------------------------------------------------------
Confidence 1111 11
Q ss_pred hhhhhhhhhcCCcceeeCCCCCCcccccCcceEEeecccCCCCCCCCCCccccEecCCCCCChhhHHHHHHHHHHHHHHH
Q psy10531 435 ATCSLVALDTNHQPLTISPTDTRHSTELTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYG 514 (564)
Q Consensus 435 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~~~P~~~G~r~P~~~~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~ 514 (564)
.+++.+++|+|+|.|+|+|+||++++|+|+|++.+|++.|+ +||++||++|.
T Consensus 83 -------------------------~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~~~~~~~---~rAv~Egia~~ 134 (198)
T PF02782_consen 83 -------------------------PPGSGGVFFLPFLSGERSPYWDPDARGSFIGLSSDTTRADL---ARAVLEGIAFS 134 (198)
T ss_dssp -------------------------SSTCTTSEEEECTTGBCTTTBBTTHCEEEEEEETTTSHHHH---HHHHHHHHHHH
T ss_pred -------------------------cCcccceeeeeccccCcccccccccccccccCCcccCHHHH---HHHHHHhHHHH
Confidence 11368999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHc-CCCCCCCEEEEEcCCcccHHHHHHHhhhcCCeeeccCC
Q psy10531 515 TRHIMDAMHAA-GKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563 (564)
Q Consensus 515 ~~~~~~~l~~~-g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~~~~ 563 (564)
+|++++.|++. +.+ +++|+++||++||++|+|++||++|+||.+++.
T Consensus 135 ~~~~~~~l~~~~~~~--~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~ 182 (198)
T PF02782_consen 135 LRQILEELEELTGIP--IRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV 182 (198)
T ss_dssp HHHHHHHHHHHHTSC--ESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS
T ss_pred HHHhhhhcccccccc--ceeeEeccccccChHHHHHHHHHhCCceEeCCC
Confidence 99999999987 888 999999999999999999999999999998763
No 24
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=98.97 E-value=1.5e-09 Score=115.61 Aligned_cols=103 Identities=35% Similarity=0.425 Sum_probs=83.9
Q ss_pred HHHHHHHHHhhcccCCCCCceEEccCCCCCCCCCCCCCcccceeccCCCCCchhHHHHHHHHHHHHHhh----------h
Q psy10531 351 VIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADV----------T 420 (564)
Q Consensus 351 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~----------~ 420 (564)
.++.|++...... +...+.+++||++|||||+.|++++|+|+|++++|+.+||+..|...+++++.- .
T Consensus 351 ~~~~l~~~~~~~~--~l~~~l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~ 428 (544)
T COG1069 351 RLELLTEAAAAIP--PLASGLHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQ 428 (544)
T ss_pred HHHHHHhhHhccC--cccCCcEecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHc
Confidence 3455554444433 344788999999999999999999999999999999999999996655554422 4
Q ss_pred cc-cCccEEeccccch--hhhhhhhhcCCcceeeCCCCC
Q psy10531 421 KD-VNPAQIKGVGVDA--TCSLVALDTNHQPLTISPTDT 456 (564)
Q Consensus 421 ~~-~~~~~~~ggg~~~--~~~~~a~~~~~~~~~~~~~~~ 456 (564)
|- |+++++.||..|| |+|+.||++| +|+.+.+.+.
T Consensus 429 g~~Id~l~~sGG~~KN~llmql~aDvtg-~~v~i~~s~~ 466 (544)
T COG1069 429 GIAIDTLFASGGIRKNPLLMQLYADVTG-RPVVIPASDQ 466 (544)
T ss_pred CCeeeEEEecCCcccCHHHHHHHHHhcC-CeEEeecccc
Confidence 66 9999999999999 9999999999 8998886443
No 25
>KOG2517|consensus
Probab=98.93 E-value=2.6e-09 Score=114.62 Aligned_cols=83 Identities=29% Similarity=0.396 Sum_probs=71.9
Q ss_pred CceEEccCCCCCCCCCCCCCcccceeccCCCCCchhHHHHH--------HHHHHHHHhhhcc-cCccEEeccccch--hh
Q psy10531 369 ADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLY--------LATIQALADVTKD-VNPAQIKGVGVDA--TC 437 (564)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~i~~l~~~~~~-~~~~~~~ggg~~~--~~ 437 (564)
.+++|+|+|+|+|+|+||++++|.|+|++.+|+.++|+++. +..|+.+..-.+. ++++.+-||=++| ++
T Consensus 352 ~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~ts~~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~ 431 (516)
T KOG2517|consen 352 SDVHFVPDFHGLRSPYADPTARGVIIGLSQDTSKEHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLM 431 (516)
T ss_pred CceEEEccccCCCCCCCCcccceeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHH
Confidence 57999999999999999999999999999999999888843 4555666555544 9999999999999 99
Q ss_pred hhhhhhcCCcceeeC
Q psy10531 438 SLVALDTNHQPLTIS 452 (564)
Q Consensus 438 ~~~a~~~~~~~~~~~ 452 (564)
|++||..| +||..+
T Consensus 432 Q~~ADi~g-~pv~~p 445 (516)
T KOG2517|consen 432 QLQADILG-LPVVRP 445 (516)
T ss_pred HHHHHHhC-Cccccc
Confidence 99999999 777765
No 26
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=98.72 E-value=3.4e-08 Score=110.06 Aligned_cols=83 Identities=31% Similarity=0.527 Sum_probs=70.0
Q ss_pred CceEEccCCCCCCCCCCCCCcccceeccCCCCCc---hhHHH--------HHHHHHHHHHhhhcc-cCccEEeccccch-
Q psy10531 369 ADFHVWPDFHGNRSPLADADMKGMICGLTLDSSE---TSLVT--------LYLATIQALADVTKD-VNPAQIKGVGVDA- 435 (564)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~l~~--------~~~~~i~~l~~~~~~-~~~~~~~ggg~~~- 435 (564)
.++.|+|+|.|+|+|++|++++|.|+|++..|++ .++++ ..+.+++.+.+. |. +++|+++|||++|
T Consensus 379 ~gl~flP~l~G~r~P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~-g~~~~~i~~~GGga~s~ 457 (541)
T TIGR01315 379 RHFHVYPDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTA-GHTIKSIFMSGGQCQNP 457 (541)
T ss_pred CceEEccccccCcCCCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccEEEEecCcccCH
Confidence 5789999999999999999999999999999997 33333 336666666653 54 8999999999999
Q ss_pred -hhhhhhhhcCCcceeeCC
Q psy10531 436 -TCSLVALDTNHQPLTISP 453 (564)
Q Consensus 436 -~~~~~a~~~~~~~~~~~~ 453 (564)
|||++||.+| +||.+..
T Consensus 458 ~w~Qi~ADvlg-~pV~~~~ 475 (541)
T TIGR01315 458 LLMQLIADACD-MPVLIPY 475 (541)
T ss_pred HHHHHHHHHHC-CeeEecC
Confidence 9999999999 8887664
No 27
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=98.69 E-value=2.5e-08 Score=96.07 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=76.2
Q ss_pred CceEEccCCCCCCCCCCCCCcccceeccCCCCC--------chhHHHHHHHHHHHHHhhhcc-cCccEEeccccch--hh
Q psy10531 369 ADFHVWPDFHGNRSPLADADMKGMICGLTLDSS--------ETSLVTLYLATIQALADVTKD-VNPAQIKGVGVDA--TC 437 (564)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~i~~l~~~~~~-~~~~~~~ggg~~~--~~ 437 (564)
.+..++|++.|+|+|++++++++.|.|+...++ .++++..++..++.+.+.++. +++|++.|||++| |+
T Consensus 87 ~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~ 166 (198)
T PF02782_consen 87 GGVFFLPFLSGERSPYWDPDARGSFIGLSSDTTRADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWM 166 (198)
T ss_dssp TTSEEEECTTGBCTTTBBTTHCEEEEEEETTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHH
T ss_pred cceeeeeccccCcccccccccccccccCCcccCHHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHH
Confidence 467899999999999999999999999999998 666666778999999999788 9999999999999 99
Q ss_pred hhhhhhcCCcceeeCC
Q psy10531 438 SLVALDTNHQPLTISP 453 (564)
Q Consensus 438 ~~~a~~~~~~~~~~~~ 453 (564)
|++||..| +||.+.+
T Consensus 167 q~~Advl~-~~V~~~~ 181 (198)
T PF02782_consen 167 QILADVLG-RPVVRPE 181 (198)
T ss_dssp HHHHHHHT-SEEEEES
T ss_pred HHHHHHhC-CceEeCC
Confidence 99999999 8888764
No 28
>PRK00047 glpK glycerol kinase; Provisional
Probab=98.64 E-value=5e-08 Score=107.71 Aligned_cols=83 Identities=22% Similarity=0.270 Sum_probs=73.0
Q ss_pred CceEEccCCCCCCCCCCCCCcccceeccCCCCCch--------hHHHHHHHHHHHHHhhhcc-cCccEEeccccch--hh
Q psy10531 369 ADFHVWPDFHGNRSPLADADMKGMICGLTLDSSET--------SLVTLYLATIQALADVTKD-VNPAQIKGVGVDA--TC 437 (564)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~i~~l~~~~~~-~~~~~~~ggg~~~--~~ 437 (564)
.++.|+|+|.|+|+|+++++++|.|+|++..|+.. +++..++.+++.+.+.+|. +++|+++|||++| ||
T Consensus 341 ~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~ 420 (498)
T PRK00047 341 DGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLM 420 (498)
T ss_pred CCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHH
Confidence 46789999999999999999999999999999944 4455568888888876676 9999999999999 99
Q ss_pred hhhhhhcCCcceeeC
Q psy10531 438 SLVALDTNHQPLTIS 452 (564)
Q Consensus 438 ~~~a~~~~~~~~~~~ 452 (564)
|++||.+| +||.+.
T Consensus 421 Qi~ADvlg-~pV~~~ 434 (498)
T PRK00047 421 QFQADILG-VPVERP 434 (498)
T ss_pred HHHHHhhC-CeeEec
Confidence 99999999 999864
No 29
>PRK04123 ribulokinase; Provisional
Probab=98.64 E-value=5.3e-08 Score=108.77 Aligned_cols=86 Identities=24% Similarity=0.321 Sum_probs=73.7
Q ss_pred CceEEccCCCCCCCCCCCCCcccceeccCCCCCchhHH--------HHHHHHHHHHHhhhcc-cCccEEeccc-cch--h
Q psy10531 369 ADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLV--------TLYLATIQALADVTKD-VNPAQIKGVG-VDA--T 436 (564)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~i~~l~~~~~~-~~~~~~~ggg-~~~--~ 436 (564)
.++.|+|+|.|+|+|+++++++|.|+|++..|++.+++ ..++.+++.+.+ .|. +++|+++||| ++| |
T Consensus 377 ~gl~f~P~l~Ger~P~~~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~e~l~~-~g~~~~~i~~~GGg~s~s~~w 455 (548)
T PRK04123 377 HGLVALDWFNGRRTPLADQRLKGVITGLTLGTDAPDIYRALIEATAFGTRAIMECFED-QGVPVEEVIAAGGIARKNPVL 455 (548)
T ss_pred CceEEcccccCCCCCCCCCCCceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcceEEEeCCCcccCHHH
Confidence 57889999999999999999999999999999955555 455788888887 455 8999999999 999 9
Q ss_pred hhhhhhhcCCccee-eCCCCC
Q psy10531 437 CSLVALDTNHQPLT-ISPTDT 456 (564)
Q Consensus 437 ~~~~a~~~~~~~~~-~~~~~~ 456 (564)
||++||.+| +||. ..+.|.
T Consensus 456 ~Qi~ADv~g-~pV~~~~~~e~ 475 (548)
T PRK04123 456 MQIYADVLN-RPIQVVASDQC 475 (548)
T ss_pred HHHHHHhcC-CceEecCcccc
Confidence 999999999 8984 445454
No 30
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=98.61 E-value=6.6e-08 Score=106.60 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=73.2
Q ss_pred CceEEccCCCCCCCCCCCCCcccceeccCCCCCc--------hhHHHHHHHHHHHHHhhhcc-cCccEEeccccch--hh
Q psy10531 369 ADFHVWPDFHGNRSPLADADMKGMICGLTLDSSE--------TSLVTLYLATIQALADVTKD-VNPAQIKGVGVDA--TC 437 (564)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~i~~l~~~~~~-~~~~~~~ggg~~~--~~ 437 (564)
.++.|+|+|.|+|+|+++++++|.|+|++..|+. |+++..++..++.+.+.+|. +++|+++|||++| ||
T Consensus 337 ~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~ 416 (493)
T TIGR01311 337 GGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLM 416 (493)
T ss_pred CCEEEeCcccCCCCCcCCCCCcEEEECcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHH
Confidence 3568899999999999999999999999999994 45555668888888876677 9999999999999 99
Q ss_pred hhhhhhcCCcceeeC
Q psy10531 438 SLVALDTNHQPLTIS 452 (564)
Q Consensus 438 ~~~a~~~~~~~~~~~ 452 (564)
|++||.+| +||.+.
T Consensus 417 Qi~ADv~g-~pv~~~ 430 (493)
T TIGR01311 417 QFQADILG-VPVVRP 430 (493)
T ss_pred HHHHHhcC-CeeEec
Confidence 99999999 888763
No 31
>PLN02295 glycerol kinase
Probab=98.56 E-value=1.1e-07 Score=105.32 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=70.2
Q ss_pred eEEccCCCCCCCCCCCCCcccceeccCCCCCchhHHH--------HHHHHHHHHHhh-----hcc-cCccEEeccccch-
Q psy10531 371 FHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVT--------LYLATIQALADV-----TKD-VNPAQIKGVGVDA- 435 (564)
Q Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~i~~l~~~-----~~~-~~~~~~~ggg~~~- 435 (564)
+.|+|+|.|+|+|+++++++|.|+|++..|++.++++ .++.+++.+.+. ++. +++|+++|||++|
T Consensus 347 l~f~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~ 426 (512)
T PLN02295 347 VYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANN 426 (512)
T ss_pred eEEeCcccCCCCCcCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCH
Confidence 5689999999999999999999999999999555544 557888888765 344 8999999999999
Q ss_pred -hhhhhhhhcCCcceeeC
Q psy10531 436 -TCSLVALDTNHQPLTIS 452 (564)
Q Consensus 436 -~~~~~a~~~~~~~~~~~ 452 (564)
|||++||.+| +||.+.
T Consensus 427 ~w~Qi~ADv~g-~pV~~~ 443 (512)
T PLN02295 427 LLMQIQADLLG-SPVVRP 443 (512)
T ss_pred HHHHHHHHhcC-CceEec
Confidence 9999999999 888764
No 32
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=98.52 E-value=1.7e-07 Score=103.53 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=71.2
Q ss_pred eEEccCCCCCCCCCCCCCcccceeccCCCCCchhHHH--------HHHHHHHHHHhhhcc-cCccEEeccccch--hhhh
Q psy10531 371 FHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVT--------LYLATIQALADVTKD-VNPAQIKGVGVDA--TCSL 439 (564)
Q Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~i~~l~~~~~~-~~~~~~~ggg~~~--~~~~ 439 (564)
+.|+|+|.|+|+|+++++++|.|+|++..|+..++++ .++..++.+.+..|. +++|+++|||++| |||+
T Consensus 346 l~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi 425 (504)
T PTZ00294 346 VVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQF 425 (504)
T ss_pred EEEeCcccCCCCCCCCCCCCEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHH
Confidence 4688999999999999999999999999999555554 568888888876676 9999999999999 9999
Q ss_pred hhhhcCCcceeeC
Q psy10531 440 VALDTNHQPLTIS 452 (564)
Q Consensus 440 ~a~~~~~~~~~~~ 452 (564)
+||..| +||.+.
T Consensus 426 ~Adv~g-~pV~~~ 437 (504)
T PTZ00294 426 QADILG-KDIVVP 437 (504)
T ss_pred HHHHhC-CceEec
Confidence 999999 888754
No 33
>PRK15027 xylulokinase; Provisional
Probab=98.51 E-value=1.7e-07 Score=103.02 Aligned_cols=82 Identities=18% Similarity=0.252 Sum_probs=71.0
Q ss_pred CceEEccCCCCCCCCCCCCCcccceeccCCCCCchhHHH--------HHHHHHHHHHhhhcc-cCccEEeccccch--hh
Q psy10531 369 ADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVT--------LYLATIQALADVTKD-VNPAQIKGVGVDA--TC 437 (564)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~i~~l~~~~~~-~~~~~~~ggg~~~--~~ 437 (564)
.++.|+|++.|+|+|++++++++.|+|++..|+..++++ .++..++.+.+ .|. +++|+++|||++| ||
T Consensus 325 ~gl~~~P~l~G~r~P~~~~~arg~f~gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~w~ 403 (484)
T PRK15027 325 EPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHA-CGIKPQSVTLIGGGARSEYWR 403 (484)
T ss_pred CceEEecccccCCCcCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccEEEEeCcccCCHHHH
Confidence 467899999999999999999999999999999555554 55788888876 465 8999999999999 99
Q ss_pred hhhhhhcCCcceeeC
Q psy10531 438 SLVALDTNHQPLTIS 452 (564)
Q Consensus 438 ~~~a~~~~~~~~~~~ 452 (564)
|++||.+| +||...
T Consensus 404 Qi~Adv~g-~pv~~~ 417 (484)
T PRK15027 404 QMLADISG-QQLDYR 417 (484)
T ss_pred HHHHHHhC-CeEEee
Confidence 99999999 898543
No 34
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=98.49 E-value=2.1e-07 Score=102.89 Aligned_cols=83 Identities=22% Similarity=0.304 Sum_probs=73.8
Q ss_pred CceEEccCCCCCCCCCCCCCcccceeccCCCCCchhHHH--------HHHHHHHHHHhhhcc-cCccEEeccccch--hh
Q psy10531 369 ADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVT--------LYLATIQALADVTKD-VNPAQIKGVGVDA--TC 437 (564)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~i~~l~~~~~~-~~~~~~~ggg~~~--~~ 437 (564)
.++.|+|++.|+|+|+++++++|.|+|++..|+..++++ .++..++.+.+..|. +++|+++|||++| ||
T Consensus 339 ~gl~~~P~l~G~r~P~~~~~~rg~f~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w~ 418 (505)
T TIGR01314 339 DGLLFHPYLAGERAPLWNANARGSFFGLTYSHKKEHMIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVWR 418 (505)
T ss_pred CceEEecccccCCCCCCCCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHHH
Confidence 567899999999999999999999999999999766666 456777888776777 9999999999999 99
Q ss_pred hhhhhhcCCcceeeC
Q psy10531 438 SLVALDTNHQPLTIS 452 (564)
Q Consensus 438 ~~~a~~~~~~~~~~~ 452 (564)
|++||.+| +||.+.
T Consensus 419 Qi~Adv~g-~pv~~~ 432 (505)
T TIGR01314 419 QMMSDIFE-QEIVVP 432 (505)
T ss_pred HHHHHHcC-CeeEec
Confidence 99999999 899855
No 35
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=98.47 E-value=2.4e-07 Score=103.16 Aligned_cols=82 Identities=30% Similarity=0.346 Sum_probs=71.4
Q ss_pred CceEEccCCCCCCCCCCCCCcccceeccCCCCCchhHH--------HHHHHHHHHHHhhhcc-cCccEEeccc-cch--h
Q psy10531 369 ADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLV--------TLYLATIQALADVTKD-VNPAQIKGVG-VDA--T 436 (564)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~i~~l~~~~~~-~~~~~~~ggg-~~~--~ 436 (564)
.++.|+|+|.|+|+|+++++++|.|+|++..|++.+++ ..++..++.+.+ .|. +++|+++||| ++| |
T Consensus 374 ~gllflP~l~Ger~P~~d~~arG~~~Gl~~~~~~~~~~RAvlEgia~~~~~~l~~l~~-~g~~~~~i~~~GGg~a~s~~w 452 (536)
T TIGR01234 374 HGLVALDWFNGNRSPLVDQRLKGVITGLTLATDAPLLYRALIEATAFGTRMIMETFTD-SGVPVEELMAAGGIARKNPVI 452 (536)
T ss_pred CCeEecchhccCCCCCCCCcceEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcceEEEeCCccccCHHH
Confidence 56789999999999999999999999999999955544 455788888876 566 9999999999 899 9
Q ss_pred hhhhhhhcCCcceeeC
Q psy10531 437 CSLVALDTNHQPLTIS 452 (564)
Q Consensus 437 ~~~~a~~~~~~~~~~~ 452 (564)
||++||.+| +||.+.
T Consensus 453 ~Qi~Adv~g-~pV~~~ 467 (536)
T TIGR01234 453 MQIYADVTN-RPLQIV 467 (536)
T ss_pred HHHHHHhhC-CeeEec
Confidence 999999999 888644
No 36
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=98.46 E-value=4.4e-07 Score=100.25 Aligned_cols=102 Identities=18% Similarity=0.262 Sum_probs=83.8
Q ss_pred CceEEccCCCCCCCCCCCCCcccceeccCCCCC--------chhHHHHHHHHHHHHHhhhcc-cCccEEeccccch--hh
Q psy10531 369 ADFHVWPDFHGNRSPLADADMKGMICGLTLDSS--------ETSLVTLYLATIQALADVTKD-VNPAQIKGVGVDA--TC 437 (564)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~i~~l~~~~~~-~~~~~~~ggg~~~--~~ 437 (564)
.++.|.|++.|||.|.+++++++.|.++...++ +|+++..++..++.|.+.+|+ +++|+++|||++| |+
T Consensus 339 ~~l~f~p~l~~er~p~~~~~~r~~~~g~~~~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGgars~~w~ 418 (502)
T COG1070 339 IGLLFLPYLSGERGPHADPAARGGFVGLTLPHTRAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLWL 418 (502)
T ss_pred CCcEEeccccCCcCCCCCccceeEEEccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCcccCHHHH
Confidence 567899999999999999999999999999999 455555678889999999998 9999999999999 99
Q ss_pred hhhhhhcCCcceeeCC-CCCCcccccCcceEEeecccCC
Q psy10531 438 SLVALDTNHQPLTISP-TDTRHSTELTADFHVWPDFHGN 475 (564)
Q Consensus 438 ~~~a~~~~~~~~~~~~-~~~~~~~~~~~gl~~~P~~~G~ 475 (564)
||+||++| +||.+++ .|++ ...|....-+..|.
T Consensus 419 Qi~Ad~~g-~~v~~~~~~e~~----a~g~A~~~~~~~~~ 452 (502)
T COG1070 419 QILADALG-LPVVVPEVEEAG----ALGGAALAAAALGG 452 (502)
T ss_pred HHHHHHcC-CeeEecCcccch----HHHHHHHHHHHhCC
Confidence 99999999 9998775 3333 13444444444443
No 37
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.44 E-value=2.9e-07 Score=92.31 Aligned_cols=60 Identities=18% Similarity=0.377 Sum_probs=51.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-EEEEEcCCcccHHHHHHHhhhcCCeeeccCC
Q psy10531 494 DSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAIS-TLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563 (564)
Q Consensus 494 ~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~-~i~~~GG~a~s~~~~q~~Adv~g~~v~~~~~ 563 (564)
..+++++ ++++++++++.++.++..+ . ++ .|+++||+++|+.|+|.+++.+|.||.++++
T Consensus 176 g~~~~di---~~~~~~~va~~i~~~~~~~-----~--~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~ 236 (248)
T TIGR00241 176 GVKKEDI---LAGVYESIAERVAEMLQRL-----K--IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPE 236 (248)
T ss_pred CCCHHHH---HHHHHHHHHHHHHHHHhhc-----C--CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCC
Confidence 3468899 8899999999999766432 2 44 7999999999999999999999999998875
No 38
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=98.34 E-value=8.7e-07 Score=97.35 Aligned_cols=84 Identities=18% Similarity=0.321 Sum_probs=72.1
Q ss_pred CceEEccCCCCCCCCCCCCCcccceeccCCCCCchhHH--------HHHHHHHHHHHhhhcc-cCccEEeccccch--hh
Q psy10531 369 ADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLV--------TLYLATIQALADVTKD-VNPAQIKGVGVDA--TC 437 (564)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~i~~l~~~~~~-~~~~~~~ggg~~~--~~ 437 (564)
.+..++|++.|+|+|+++++++|.|+|++..++.++++ ..++..++.+.+..|. +++|+++|||++| ||
T Consensus 328 ~~~~~~p~~~G~r~P~~~~~~~g~~~gl~~~~~~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~ 407 (481)
T TIGR01312 328 EGVTFLPYLNGERTPHLDPQARGSFIGLTHNTTRADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWR 407 (481)
T ss_pred CCeEEecccccCCCCCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHH
Confidence 46789999999999999999999999999999855444 4557888888776655 9999999999999 99
Q ss_pred hhhhhhcCCcceeeCC
Q psy10531 438 SLVALDTNHQPLTISP 453 (564)
Q Consensus 438 ~~~a~~~~~~~~~~~~ 453 (564)
|++||.+| .||....
T Consensus 408 Q~~Adv~g-~pv~~~~ 422 (481)
T TIGR01312 408 QMLADIFG-TPVDVPE 422 (481)
T ss_pred HHHHHHhC-CceeecC
Confidence 99999999 7887653
No 39
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=98.01 E-value=1.1e-05 Score=85.37 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=74.7
Q ss_pred ceEEccCCCCCCCCCCCCCcccceeccCCCCCchhHHHHH--------HHHHHHHHhhhcc-cCccEEeccccch--hhh
Q psy10531 370 DFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLY--------LATIQALADVTKD-VNPAQIKGVGVDA--TCS 438 (564)
Q Consensus 370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~i~~l~~~~~~-~~~~~~~ggg~~~--~~~ 438 (564)
++.|.|-|.|=.+||||++++|.|+|++..++.++|+++. ..+|+.+..-.|. +.+++|=||.++| |||
T Consensus 341 gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQ 420 (499)
T COG0554 341 GVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQ 420 (499)
T ss_pred ceEEEcccccCCCCCcCcccceeEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHH
Confidence 4678999999999999999999999999999988888743 6788888888886 9999999999999 999
Q ss_pred hhhhhcCCcceeeCC
Q psy10531 439 LVALDTNHQPLTISP 453 (564)
Q Consensus 439 ~~a~~~~~~~~~~~~ 453 (564)
++||.+| .||.++.
T Consensus 421 fqADilg-~~V~Rp~ 434 (499)
T COG0554 421 FQADILG-VPVERPV 434 (499)
T ss_pred HHHHHhC-Ceeeccc
Confidence 9999999 8887764
No 40
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.01 E-value=6.2e-05 Score=78.57 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=46.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhc-----CCeeeccCC
Q psy10531 494 DSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVT-----GCNVLCPQE 563 (564)
Q Consensus 494 ~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~-----g~~v~~~~~ 563 (564)
..+++|+ ..++..+++-.+...+..+. +. -..|.++||.++|+.+.+.+.+.+ +++|.+++.
T Consensus 353 G~~reDI---aAGL~~SIA~Rv~s~l~r~~--~i---~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~ 419 (432)
T TIGR02259 353 GDKREDI---LAGLHRAIILRAISIISRSG--GI---TDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPD 419 (432)
T ss_pred CCCHHHH---HHHHHHHHHHHHHHHHhccc--CC---CCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCC
Confidence 3578999 77888888776555443322 22 257999999999999999999999 577887764
No 41
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=97.99 E-value=5e-06 Score=90.76 Aligned_cols=75 Identities=21% Similarity=0.252 Sum_probs=62.9
Q ss_pred CCCCCCCCCC-Ccccce------eccCCCCC--------chhHHHHHHHHHHHHHhhhcc-cCccEEeccccch--hhhh
Q psy10531 378 HGNRSPLADA-DMKGMI------CGLTLDSS--------ETSLVTLYLATIQALADVTKD-VNPAQIKGVGVDA--TCSL 439 (564)
Q Consensus 378 ~g~~~~~~~~-~~~~~~------~~~~~~~~--------~~~l~~~~~~~i~~l~~~~~~-~~~~~~~ggg~~~--~~~~ 439 (564)
+++++|++++ +|++.+ +|++..|+ +|+++..++.+++.+.+.++. +++|+++|||++| |||+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi 406 (454)
T TIGR02627 327 NPNDDRFINPENMCEEIQAYCRETNQPIPESDAELARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQL 406 (454)
T ss_pred CCCcccccChhhhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChhhhHHHHHH
Confidence 4577788888 677777 99999999 555555668899999887777 9999999999999 9999
Q ss_pred hhhhcCCcceeeCC
Q psy10531 440 VALDTNHQPLTISP 453 (564)
Q Consensus 440 ~a~~~~~~~~~~~~ 453 (564)
+||.+| +||...+
T Consensus 407 ~ADvlg-~pV~~~~ 419 (454)
T TIGR02627 407 CADACG-IRVIAGP 419 (454)
T ss_pred HHHHhC-CceEcCC
Confidence 999999 8887554
No 42
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=97.93 E-value=4.7e-06 Score=91.36 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=64.1
Q ss_pred CCCCCCCCC-CCcccceeccCCCC------C--------chhHHHHHHHHHHHHHhhhcc-cCccEEeccccch--hhhh
Q psy10531 378 HGNRSPLAD-ADMKGMICGLTLDS------S--------ETSLVTLYLATIQALADVTKD-VNPAQIKGVGVDA--TCSL 439 (564)
Q Consensus 378 ~g~~~~~~~-~~~~~~~~~~~~~~------~--------~~~l~~~~~~~i~~l~~~~~~-~~~~~~~ggg~~~--~~~~ 439 (564)
.|+|+ ++ ++|+|.|+|++..| + +|+++..++.+++.+.+.+++ +++|+++|||++| |||+
T Consensus 317 ~ger~--~~~~~arg~~~gl~~~~G~~~~~~~~~l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi 394 (471)
T PRK10640 317 NDDRF--INPPSMCSEIQAACRETAQPVPESDAELARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQL 394 (471)
T ss_pred Ccccc--cCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHH
Confidence 78883 45 59999999988887 5 667777789999999988777 8999999999999 9999
Q ss_pred hhhhcCCcceeeCCCC
Q psy10531 440 VALDTNHQPLTISPTD 455 (564)
Q Consensus 440 ~a~~~~~~~~~~~~~~ 455 (564)
+||.+| +||...+.|
T Consensus 395 ~ADvlg-~pV~~~~~e 409 (471)
T PRK10640 395 CADACG-IRVIAGPVE 409 (471)
T ss_pred HHHHhC-CCeeeCChh
Confidence 999999 888776543
No 43
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=97.89 E-value=2e-05 Score=87.58 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=65.6
Q ss_pred ccCCCCCCCCCCCCCcccceeccCCCC---C--------chhHHHHHHHHHHHHHhhhcc-cCccEEeccccch--hhhh
Q psy10531 374 WPDFHGNRSPLADADMKGMICGLTLDS---S--------ETSLVTLYLATIQALADVTKD-VNPAQIKGVGVDA--TCSL 439 (564)
Q Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~---~--------~~~l~~~~~~~i~~l~~~~~~-~~~~~~~ggg~~~--~~~~ 439 (564)
+|+|.|+|+|..+++.++.|+|++..| + .|+++..++.+++.+.+.+|. +++++++|||++| |||+
T Consensus 349 ~P~l~g~~~~~~~~~~~g~f~Gl~~~~~~~~~~~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi 428 (520)
T PRK10939 349 IPIFSDVMRFKSWYHAAPSFINLSIDPEKCNKATLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQI 428 (520)
T ss_pred cccccCCCCCCCCcccceeEEccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHH
Confidence 589999987655568999999999987 5 445555557788888776676 9999999999999 9999
Q ss_pred hhhhcCCcceeeCC
Q psy10531 440 VALDTNHQPLTISP 453 (564)
Q Consensus 440 ~a~~~~~~~~~~~~ 453 (564)
+||.+| +||.+..
T Consensus 429 ~ADvlg-~pV~~~~ 441 (520)
T PRK10939 429 LADVTG-LPVKVPV 441 (520)
T ss_pred HHHhcC-CeeEEec
Confidence 999999 8888665
No 44
>PRK10331 L-fuculokinase; Provisional
Probab=97.72 E-value=5.6e-05 Score=82.95 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=63.2
Q ss_pred CceEEccCCCCCCCCCCCCCcccceeccCCCCCchhHHH--------HHHHHHHHHHhhhcc-cCccEEeccccch--hh
Q psy10531 369 ADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVT--------LYLATIQALADVTKD-VNPAQIKGVGVDA--TC 437 (564)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~i~~l~~~~~~-~~~~~~~ggg~~~--~~ 437 (564)
.++.|+|++.|+| +|.|+|++..|+..+|++ .++..++.+.+..+. +++|+++|||++| ||
T Consensus 335 ~gl~~~p~~~g~~--------rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~ 406 (470)
T PRK10331 335 DGVKMQCDLLACQ--------NAGWQGVTLNTTRGHFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWN 406 (470)
T ss_pred CceEecccccccC--------ceeEECCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHH
Confidence 4667889998887 999999999999555555 557888888876665 9999999999999 99
Q ss_pred hhhhhhcCCcceeeC
Q psy10531 438 SLVALDTNHQPLTIS 452 (564)
Q Consensus 438 ~~~a~~~~~~~~~~~ 452 (564)
|++||.+| +||.+.
T Consensus 407 Qi~Advlg-~pV~~~ 420 (470)
T PRK10331 407 QIKANMLD-IPIKVL 420 (470)
T ss_pred HHHHHhcC-CeeEec
Confidence 99999999 888654
No 45
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.00026 Score=73.40 Aligned_cols=76 Identities=20% Similarity=0.344 Sum_probs=56.5
Q ss_pred CcEEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEeCCC
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDV-NPAQIKGVGVDATC 79 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~-~~~~I~aIgis~q~ 79 (564)
|.+++|||+|.|++|++++|.+|+++...+.+++. ..+.+.+.+.+.+.+++++... ...++.+||+ .
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~~~~~~~iGIgi---~ 73 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPT--------PDPEEAILEAILALVAELLKQAQGRVAIIGIGI---P 73 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCC--------CCchhHHHHHHHHHHHHHHHhcCCcCceEEEEe---c
Confidence 35899999999999999999999999999888774 2233577788888888887332 2345777777 4
Q ss_pred ceEEEcCC
Q psy10531 80 SLVALDTN 87 (564)
Q Consensus 80 s~v~~D~~ 87 (564)
+.+.+|+.
T Consensus 74 ~pg~~~~~ 81 (314)
T COG1940 74 GPGDVDNG 81 (314)
T ss_pred cceeccCC
Confidence 44455543
No 46
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=97.22 E-value=0.00025 Score=60.24 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=39.3
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEe
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVD 76 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis 76 (564)
.+||||+|+|.+|++++|.+|+++...+.+... +.+.+++.+.+.+++. ++.+|||+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~----------~~~~~~~~l~~~i~~~-------~~~~i~Ig 58 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGKLADPLEVIPRT----------NKEADAARLKKLIKKY-------QPDLIVIG 58 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCCEecCEEEEEec----------CcchHHHHHHHHHHHh-------CCCEEEEe
Confidence 379999999999999999999999776654321 2334555655555542 34556663
No 47
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.15 E-value=0.00053 Score=68.73 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=54.3
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHh--cCCCCCeEEEEEeCC-C
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTK--DVNPAQIKGVGVDAT-C 79 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~--~~~~~~I~aIgis~q-~ 79 (564)
|+||||+|||++|++++| +|++++..+. |++.||+++++++++++. +.+..+|.+|++|++ +
T Consensus 1 ~~lGIDiGtts~K~vl~d-~g~il~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~~i~~i~~Tg~~~ 65 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-DGKVIGYKWL--------------DTTPVIEETARAILEALKEAGIGLEPIDKIVATGYGR 65 (248)
T ss_pred CEEEEEcChhheEEEEEc-CCEEEEEEEe--------------cCCCCHHHHHHHHHHHHHHcCCChhheeEEEEECCCc
Confidence 579999999999999999 8999988754 445578888888888873 345678999999998 7
Q ss_pred ceEE
Q psy10531 80 SLVA 83 (564)
Q Consensus 80 s~v~ 83 (564)
++++
T Consensus 66 ~~v~ 69 (248)
T TIGR00241 66 HKVG 69 (248)
T ss_pred cccc
Confidence 7765
No 48
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=97.11 E-value=0.00074 Score=74.06 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=54.4
Q ss_pred CCCcccceeccCCCCCchhHHH--------HHHHHHHHHHhhhcc-cCccEEeccccch--hhhhhhhhcCCcceeeC
Q psy10531 386 DADMKGMICGLTLDSSETSLVT--------LYLATIQALADVTKD-VNPAQIKGVGVDA--TCSLVALDTNHQPLTIS 452 (564)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~l~~--------~~~~~i~~l~~~~~~-~~~~~~~ggg~~~--~~~~~a~~~~~~~~~~~ 452 (564)
.++.+|.|+|++..|+..++.+ .++..++.+.+..+. +++|+++|||++| |||++||.+| +||.+.
T Consensus 348 ~~~a~g~~~Gl~~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~g-~pV~~~ 424 (465)
T TIGR02628 348 LSCGQGGIQGLTLNTTRGHIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANMLD-IPVKVV 424 (465)
T ss_pred CcccceeEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhcC-CeeEec
Confidence 3577899999999999555554 557888888876554 9999999999999 9999999999 887644
No 49
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.00 E-value=0.0049 Score=62.04 Aligned_cols=63 Identities=8% Similarity=0.061 Sum_probs=46.5
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEe
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVD 76 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis 76 (564)
++||||+|.|++|++++|.+|+++.+.+.+++ ..+++++.+.+.+.+++.... ...+.+|||+
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~--~~~~~gIgv~ 63 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQRIWHKRVPTP---------REDYPQLLQILRDLTEEADTY--CGVQGSVGIG 63 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh--cCCCceEEEE
Confidence 36999999999999999999999988766543 236677888888777766421 1234467764
No 50
>PRK09698 D-allose kinase; Provisional
Probab=96.98 E-value=0.0059 Score=62.89 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=51.6
Q ss_pred cEEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCce
Q psy10531 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVDATCSL 81 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis~q~s~ 81 (564)
.|++|||+|.|++|++++|.+|+++.+.+.+++. ..+++. .+.+.+.+++++.... .++.+|||+..
T Consensus 4 ~~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~~--------~~~~~~-~~~l~~~i~~~~~~~~-~~i~gigia~p--- 70 (302)
T PRK09698 4 NVVLGIDMGGTHIRFCLVDAEGEILHCEKKRTAE--------VIAPDL-VSGLGEMIDEYLRRFN-ARCHGIVMGFP--- 70 (302)
T ss_pred cEEEEEEcCCcEEEEEEEcCCCCEEEEEEeCCcc--------ccchHH-HHHHHHHHHHHHHHcC-CCeeEEEEeCC---
Confidence 3899999999999999999999999887766542 123333 6666777777663322 57899998542
Q ss_pred EEEcCC
Q psy10531 82 VALDTN 87 (564)
Q Consensus 82 v~~D~~ 87 (564)
.++|.+
T Consensus 71 G~vd~~ 76 (302)
T PRK09698 71 ALVSKD 76 (302)
T ss_pred cceeCC
Confidence 245654
No 51
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=96.90 E-value=0.0026 Score=64.43 Aligned_cols=67 Identities=25% Similarity=0.369 Sum_probs=50.7
Q ss_pred CcEEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCH-HHHHHHHHHHHHHHH--hcCCCCCeEEEE
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSS-EDIWNSVCLAIRDVT--KDVNPAQIKGVG 74 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~-~~~~~~i~~~l~~l~--~~~~~~~I~aIg 74 (564)
|+|+||||-|+|++|++|.|.+|+++...... +... ..++ +.-++.+.+++.+++ ++.++++|.++.
T Consensus 4 ~~~~lGVDGGGTkt~a~l~~~~g~vlg~g~sG------pAN~-~~~~~e~A~~ni~~ai~~A~~~aG~~~~~i~~~~ 73 (301)
T COG2971 4 MPYFLGVDGGGTKTRAVLADEDGNVLGRGKSG------PANI-QLVGKEEAVRNIKDAIREALDEAGLKPDEIAAIV 73 (301)
T ss_pred ccEEEEEccCCcceEEEEEcCCCcEEEEeccC------Ccee-cccchHHHHHHHHHHHHHHHHhcCCCHHHhCcee
Confidence 57999999999999999999999999877332 1122 2344 788899999999888 556666655443
No 52
>PRK09557 fructokinase; Reviewed
Probab=96.90 E-value=0.0063 Score=62.67 Aligned_cols=75 Identities=11% Similarity=0.142 Sum_probs=53.4
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCceE
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVDATCSLV 82 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis~q~s~v 82 (564)
++||||+|.|++|++++|.+|+++.+.+.+++ .++++++.+.+.+.+++..... ..+.+|||+.. -
T Consensus 1 ~~lgidig~t~~~~~l~d~~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~~--~~~~gIgi~~p---G 66 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDAGEELFRKRLPTP---------RDDYQQTIEAIATLVDMAEQAT--GQRGTVGVGIP---G 66 (301)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC---------CCCHHHHHHHHHHHHHHHHhhc--CCceEEEecCc---c
Confidence 46999999999999999999999988766543 2466778888888887775321 34677888432 2
Q ss_pred EEcC-CCCcc
Q psy10531 83 ALDT-NHQPL 91 (564)
Q Consensus 83 ~~D~-~G~pl 91 (564)
++|+ +|..+
T Consensus 67 ~vd~~~g~i~ 76 (301)
T PRK09557 67 SISPYTGLVK 76 (301)
T ss_pred cCcCCCCeEE
Confidence 3464 45544
No 53
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=96.88 E-value=0.0051 Score=58.06 Aligned_cols=86 Identities=21% Similarity=0.351 Sum_probs=61.8
Q ss_pred EEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCceEEEc
Q psy10531 6 SVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVDATCSLVALD 85 (564)
Q Consensus 6 gIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis~q~s~v~~D 85 (564)
|||+|+++++++++|.+|+++.+.+.+++ .+++++.+.+.+.++++..... .. +|||+. .-++|
T Consensus 1 gidig~~~i~~~l~d~~g~ii~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~~~--~~-gIgi~~---pG~v~ 64 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEIIYSESIPTP----------TSPEELLDALAELIERLLADYG--RS-GIGISV---PGIVD 64 (179)
T ss_dssp EEEEESSEEEEEEEETTSCEEEEEEEEHH----------SSHHHHHHHHHHHHHHHHHHHT--CE-EEEEEE---SSEEE
T ss_pred CEEECCCEEEEEEECCCCCEEEEEEEECC----------CCHHHHHHHHHHHHHHHHhhcc--cc-cEEEec---cccCc
Confidence 79999999999999999999999887764 5778899999999999874321 12 777732 23355
Q ss_pred CC-CCccccCCCCCCCCCcccccCcchHHHH
Q psy10531 86 TN-HQPLTISPTGDDSRNVLLWMDHRAVSEA 115 (564)
Q Consensus 86 ~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~ 115 (564)
.+ |..+. .|...|.+-.-.+..
T Consensus 65 ~~~g~i~~--------~~~~~~~~~~l~~~l 87 (179)
T PF00480_consen 65 SEKGRIIS--------SPNPGWENIPLKEEL 87 (179)
T ss_dssp TTTTEEEE--------CSSGTGTTCEHHHHH
T ss_pred CCCCeEEe--------cCCCCcccCCHHHHh
Confidence 44 34442 566778886544433
No 54
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=96.82 E-value=0.007 Score=62.36 Aligned_cols=63 Identities=13% Similarity=0.274 Sum_probs=47.2
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEe
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVD 76 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis 76 (564)
+++|||+|.|++|++++|.+|+++.+.+.+++ ..+++++.+.+.+.++++.... ..+.+|||+
T Consensus 1 ~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~~--~~~~~igia 63 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNEKLELQWEERVPTP---------RDSYDAFLDAVCELVAEADQRF--GCKGSVGIG 63 (303)
T ss_pred CeEEEEeCCCcEEEEEECCCCcEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhhc--CCcceEEEe
Confidence 36899999999999999999999987765543 2357888888888888775221 234467774
No 55
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=96.71 E-value=0.011 Score=61.33 Aligned_cols=63 Identities=19% Similarity=0.381 Sum_probs=49.6
Q ss_pred EEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHh--cCCCCCeEEEEEeC
Q psy10531 5 LSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTK--DVNPAQIKGVGVDA 77 (564)
Q Consensus 5 LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~--~~~~~~I~aIgis~ 77 (564)
||||+|.|++|++++|.+|+++.+.+.+.+ .+++++.+.+.+.+++++. +....++.+|||+.
T Consensus 1 lgidig~t~~~~~l~d~~g~i~~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~ 65 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNILSKWKVPTD----------TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGA 65 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCEEEEEEeCCC----------CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEec
Confidence 689999999999999999999987755432 2577788888888888773 33446799999853
No 56
>PRK00292 glk glucokinase; Provisional
Probab=96.70 E-value=0.0047 Score=64.14 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=27.2
Q ss_pred CcEEEEEEeCccceEEEEEeC-CCCEEEEEEeec
Q psy10531 1 MEYLLSVDVGTSSVRAALVST-RGKVSPIAVRPI 33 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~-~G~il~~~~~~~ 33 (564)
|+|+||||+|+|++|++++|. +++++...+.++
T Consensus 1 ~~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~ 34 (316)
T PRK00292 1 MKPALVGDIGGTNARFALCDWANGEIEQIKTYAT 34 (316)
T ss_pred CceEEEEEcCccceEEEEEecCCCceeeeEEEec
Confidence 789999999999999999995 566676665554
No 57
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.68 E-value=0.0065 Score=61.84 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=45.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhcCCeeec
Q psy10531 494 DSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLC 560 (564)
Q Consensus 494 ~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~ 560 (564)
..+++|+ .+++.++++-.+ ...+++.+.. +.|.++||.++|+.+.+.+.+.||++|.+
T Consensus 212 G~~~edI---~aGl~~sia~rv---~~~~~~~~i~---~~v~~~GGva~N~~l~~al~~~Lg~~v~~ 269 (293)
T TIGR03192 212 GYTKNMV---IAAYCQAMAERV---VSLLERIGVE---EGFFITGGIAKNPGVVKRIERILGIKAVD 269 (293)
T ss_pred CCCHHHH---HHHHHHHHHHHH---HHHhcccCCC---CCEEEECcccccHHHHHHHHHHhCCCcee
Confidence 3478999 779998888654 3334433433 56999999999999999999999999883
No 58
>PLN02669 xylulokinase
Probab=96.42 E-value=0.0071 Score=67.78 Aligned_cols=82 Identities=12% Similarity=-0.071 Sum_probs=60.7
Q ss_pred CceEEccCCCCCCCCCC----CCCcccceeccCCC---------CCchhHHHHH--------HHHHHHHHhhhcccCccE
Q psy10531 369 ADFHVWPDFHGNRSPLA----DADMKGMICGLTLD---------SSETSLVTLY--------LATIQALADVTKDVNPAQ 427 (564)
Q Consensus 369 ~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~---------~~~~~l~~~~--------~~~i~~l~~~~~~~~~~~ 427 (564)
.+..++|++.+|+.|+. +...++.|.++... ++..+++++. +..++.+.. ..++++|+
T Consensus 372 ~g~l~~~~~~~e~~P~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~RAvlEg~a~~~r~~~~~l~~-~~~~~~i~ 450 (556)
T PLN02669 372 GGKLGFYYKEHEILPPLPVGFHRYILENFSGEALDGLVEEEVGEFDPPSEVRAIIEGQFLSMRAHAERFGM-PVPPKRII 450 (556)
T ss_pred CCEEEeeccCcccCCCCCCccchhhhccccCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCcEEE
Confidence 45566788889998863 45677888888887 5666666633 455555532 23489999
Q ss_pred Eeccccch--hhhhhhhhcCCcceeeC
Q psy10531 428 IKGVGVDA--TCSLVALDTNHQPLTIS 452 (564)
Q Consensus 428 ~~ggg~~~--~~~~~a~~~~~~~~~~~ 452 (564)
++|||++| |+|++||..| .||.+.
T Consensus 451 ~~GGgs~s~~w~Qi~ADVlg-~pV~~~ 476 (556)
T PLN02669 451 ATGGASANQSILKLIASIFG-CDVYTV 476 (556)
T ss_pred EEcChhcCHHHHHHHHHHcC-CCeEec
Confidence 99999999 9999999999 677754
No 59
>PRK13321 pantothenate kinase; Reviewed
Probab=96.39 E-value=0.011 Score=59.64 Aligned_cols=63 Identities=17% Similarity=0.337 Sum_probs=44.1
Q ss_pred EEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeC
Q psy10531 4 LLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVDA 77 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis~ 77 (564)
+|+||+|.|++|.++||. ++++...+.++.. ..+++++...+.+.+++. +.+.++|.+|++++
T Consensus 2 iL~IDIGnT~ik~gl~~~-~~i~~~~~~~T~~--------~~~~~~~~~~l~~l~~~~--~~~~~~i~~i~vss 64 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDG-DRLLRSFRLPTDK--------SRTSDELGILLLSLFRHA--GLDPEDIRAVVISS 64 (256)
T ss_pred EEEEEECCCeEEEEEEEC-CEEEEEEEEecCC--------CCCHHHHHHHHHHHHHHc--CCChhhCCeEEEEe
Confidence 589999999999999994 4777666555442 345567776666666544 23345789999853
No 60
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.34 E-value=0.0084 Score=60.78 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=46.4
Q ss_pred EEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEE
Q psy10531 5 LSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGV 75 (564)
Q Consensus 5 LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgi 75 (564)
||||.|+|++|++++|.+|+++.+....- .+....+.+...+.+.+++.+++ .+.+..+|..+.+
T Consensus 1 lGIDgGgTkt~~vl~d~~g~il~~~~~~~------~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~ 67 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGNILGRGKGGG------ANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICI 67 (271)
T ss_dssp EEEEECSSEEEEEEEETTSEEEEEEEES-------TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred CEEeeChheeeeEEEeCCCCEEEEEEeCC------CCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeee
Confidence 79999999999999999999887764321 11123456777888888888887 3444456666644
No 61
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=96.30 E-value=0.011 Score=63.18 Aligned_cols=76 Identities=22% Similarity=0.283 Sum_probs=48.2
Q ss_pred cEEEEEEeCccceEEEEEeC-CCCEEEEEEeeccccCCC------------CCccccCHHHHHHHHHHHHHHHH--hcCC
Q psy10531 2 EYLLSVDVGTSSVRAALVST-RGKVSPIAVRPIALWCPK------------PQLYEQSSEDIWNSVCLAIRDVT--KDVN 66 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~-~G~il~~~~~~~~~~~~~------------~g~~eqd~~~~~~~i~~~l~~l~--~~~~ 66 (564)
+|-++||+|||.+.+.++|. +|+++++.+...++.... ++..++--..+.+.+.+.+++++ .+++
T Consensus 1 ~~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~ 80 (412)
T PF14574_consen 1 NYGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGIS 80 (412)
T ss_dssp -EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred CEEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 36789999999999999997 799999999888876432 22122222234455555555554 4667
Q ss_pred CCCeEEEEEeC
Q psy10531 67 PAQIKGVGVDA 77 (564)
Q Consensus 67 ~~~I~aIgis~ 77 (564)
+++|..+.|++
T Consensus 81 ~~~I~~i~i~G 91 (412)
T PF14574_consen 81 PEDIYEIVIVG 91 (412)
T ss_dssp GGGEEEEEEEE
T ss_pred HHHeEEEEEEe
Confidence 88999999975
No 62
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=96.22 E-value=0.0055 Score=58.15 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=55.5
Q ss_pred EEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEeCC-Cce
Q psy10531 5 LSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVDAT-CSL 81 (564)
Q Consensus 5 LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~q-~s~ 81 (564)
||||+|+|.+-++++|.++++++..+.++. +++....+.+++++++ .+.++++|..|.+++. .+=
T Consensus 2 igIDvGGT~TD~v~~d~~~~~~~~~K~~Tt------------~~d~~~gi~~al~~l~~~~~~~~~~i~~v~~gTT~~tN 69 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGVVATAKVPTT------------PDDPAEGILEALDALLEESGIDPSDIDRVRHGTTVATN 69 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCEEEEEEeCCC------------CcCHHHHHHHHHHhhhcccCCChhhCcEEEeccHHHHH
Confidence 799999999999999998788888887765 2345677888888887 3345778999988765 333
Q ss_pred EEEcCCCCcc
Q psy10531 82 VALDTNHQPL 91 (564)
Q Consensus 82 v~~D~~G~pl 91 (564)
.++-++|.++
T Consensus 70 Al~e~~g~~v 79 (176)
T PF05378_consen 70 ALLERKGARV 79 (176)
T ss_pred HHHhccCCCc
Confidence 4444555443
No 63
>PRK13318 pantothenate kinase; Reviewed
Probab=96.16 E-value=0.021 Score=57.64 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=41.1
Q ss_pred EEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEe
Q psy10531 4 LLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVD 76 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis 76 (564)
+|+||+|.|++|.+++| +|+++...+.+++. ...++++...+.+.++. .+.+..++.+|+++
T Consensus 2 iL~IDIGnT~iK~al~d-~g~i~~~~~~~t~~--------~~~~~~~~~~l~~l~~~--~~~~~~~i~~I~is 63 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GGKLVAHWRISTDS--------RRTADEYGVWLKQLLGL--SGLDPEDITGIIIS 63 (258)
T ss_pred EEEEEECCCcEEEEEEE-CCEEEEEEEEeCCC--------CCCHHHHHHHHHHHHHH--cCCCcccCceEEEE
Confidence 68999999999999999 68888777665543 22344444444333322 12233578999994
No 64
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.15 E-value=0.018 Score=61.07 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=48.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhcCCeeeccCC
Q psy10531 495 SSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563 (564)
Q Consensus 495 ~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~~~~ 563 (564)
.+++|+ ..++..+++-.+... .+++.+.. +.|+++||.++|+...+.+.+.+|+++.+|++
T Consensus 328 ~~~eDI---aAGl~~SIa~rv~~~--l~~~~~i~---~~VvftGGva~N~gvv~ale~~Lg~~iivPe~ 388 (404)
T TIGR03286 328 ASPEDV---AAAACHSVAEQVYEQ--QLQEIDVR---EPVILVGGTSLIEGLVKALGDLLGIEVVVPEY 388 (404)
T ss_pred CCHHHH---HHHHHHHHHHHHHHH--HhhcCCCC---CcEEEECChhhhHHHHHHHHHHhCCcEEECCc
Confidence 579999 779988888766531 23333332 46999999999999999999999999999874
No 65
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.07 E-value=0.02 Score=57.49 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=40.4
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhcC
Q psy10531 494 DSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTG 555 (564)
Q Consensus 494 ~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g 555 (564)
..+++|+ ..++..+++-.+...+. +.+.. -++|+++||.++|+.+.+.+.+.++
T Consensus 183 G~~~edI---~aGl~~sia~r~~~~~~---~~~~~--~~~v~~~GGva~n~~~~~~le~~l~ 236 (262)
T TIGR02261 183 GISAPNI---LKGIHESMADRLAKLLK---SLGAL--DGTVLCTGGLALDAGLLEALKDAIQ 236 (262)
T ss_pred CCCHHHH---HHHHHHHHHHHHHHHHh---ccCCC--CCcEEEECcccccHHHHHHHHHHhc
Confidence 3478999 77888888876543433 33322 2469999999999999999999884
No 66
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=95.84 E-value=0.064 Score=54.90 Aligned_cols=63 Identities=24% Similarity=0.395 Sum_probs=47.1
Q ss_pred CcEEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeC
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVDA 77 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis~ 77 (564)
|. +||||+|.|+++++++|.+|+++...+.+++. ..+++++.+.+.+.+++... ++.+|||+.
T Consensus 1 ~~-~lgvdig~~~i~~~l~dl~g~i~~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~-----~~~~igi~~ 63 (291)
T PRK05082 1 MT-TLAIDIGGTKIAAALVGEDGQIRQRRQIPTPA--------SQTPEALRQALSALVSPLQA-----QADRVAVAS 63 (291)
T ss_pred Cc-EEEEEECCCEEEEEEEcCCCcEEEEEEecCCC--------CCCHHHHHHHHHHHHHHhhh-----cCcEEEEeC
Confidence 54 79999999999999999999999877666542 23566777777777776542 355677743
No 67
>PRK12408 glucokinase; Provisional
Probab=95.33 E-value=0.021 Score=59.99 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEEEeCccceEEEEEeCCCC
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGK 24 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~ 24 (564)
++|++|||+|++|.+++|.+|+
T Consensus 17 ~~L~~DIGGT~i~~al~d~~g~ 38 (336)
T PRK12408 17 SFVAADVGGTHVRVALVCASPD 38 (336)
T ss_pred cEEEEEcChhhhheeEEeccCC
Confidence 5899999999999999998887
No 68
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=95.27 E-value=0.027 Score=64.30 Aligned_cols=31 Identities=35% Similarity=0.426 Sum_probs=27.0
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeec
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPI 33 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~ 33 (564)
.+||||||+|++|.+++|.+|+++...+.++
T Consensus 19 ~~L~iDIGGT~ir~al~~~~g~i~~~~~~~t 49 (638)
T PRK14101 19 PRLLADVGGTNARFALETGPGEITQIRVYPG 49 (638)
T ss_pred CEEEEEcCchhheeeeecCCCcccceeEEec
Confidence 4799999999999999999999887766554
No 69
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=94.71 E-value=0.11 Score=50.51 Aligned_cols=71 Identities=23% Similarity=0.396 Sum_probs=47.2
Q ss_pred EEEEEEeCccceEEEEEeCCCC-EEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcC---CCCCeEEEEEe
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGK-VSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDV---NPAQIKGVGVD 76 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~-il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~---~~~~I~aIgis 76 (564)
.+|+||+|+|++|++++...|. .+...+..|++ | ........+++++-+.+++.+.+... +..+..-+|+|
T Consensus 64 ~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~i--p-~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~~~l~lGfT 138 (206)
T PF00349_consen 64 DFLALDLGGTNLRVALVELSGNGKVEIEQEKYKI--P-EELMNGSGEELFDFIADCIAEFLKEHNLESRDEKLPLGFT 138 (206)
T ss_dssp EEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE-----HHHHTSBHHHHHHHHHHHHHHHHHHTTTTSTTSEEEEEEE
T ss_pred eEEEEeecCcEEEEEEEEEcCCCCceeeeccccC--C-hHHhcCCcccHHHHHHHHHHHHHHHhcccccccccceEEE
Confidence 5899999999999999998665 34333333332 1 11223445889999999999988322 23556667774
No 70
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=94.69 E-value=0.11 Score=54.08 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=44.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhcCCeeeccCC
Q psy10531 494 DSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563 (564)
Q Consensus 494 ~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~~~~ 563 (564)
..+++++ ..++..+++-++.. ..+++.... +.|++.||.++|......+.|.+|++|.+|+.
T Consensus 314 G~~~EdI---~AGl~~Sv~~~v~~--~~~~~~~i~---~~iv~~GGva~n~av~~ale~~lg~~V~vP~~ 375 (396)
T COG1924 314 GASPEDI---LAGLAYSVAENVAE--KVIKRVDIE---EPIVLQGGVALNKAVVRALEDLLGRKVIVPPY 375 (396)
T ss_pred CCCHHHH---HHHHHHHHHHHHHH--HHhhccCCC---CCEEEECcchhhHHHHHHHHHHhCCeeecCCc
Confidence 4578888 55666666543322 133433332 33999999999999999999999999999874
No 71
>PRK13317 pantothenate kinase; Provisional
Probab=94.64 E-value=0.71 Score=47.08 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=56.2
Q ss_pred CCCccccEec-----CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEc-CCcccHHHHHHHhhhc
Q psy10531 481 DVDMKGMICG-----LTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSG-GLAKNPLYVQTHADVT 554 (564)
Q Consensus 481 ~~~~~g~~~G-----l~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~G-G~a~s~~~~q~~Adv~ 554 (564)
..+.+.+.|| +....+++|+ .++++..++..+..+.-.+.+. .. +++|+++| |.++|+..++.+++.+
T Consensus 174 ~i~s~csvFakv~~l~~~g~~~eDI---aasl~~~v~~~I~~lA~~~ar~-~~--~~~Ivf~G~gla~n~~l~~~l~~~l 247 (277)
T PRK13317 174 PGDLTASNFGKVLHHLDSEFTSSDI---LAGVIGLVGEVITTLSIQAARE-KN--IENIVYIGSTLTNNPLLQEIIESYT 247 (277)
T ss_pred CCceeEehhhhhhhhhccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHh-cC--CCeEEEECcccccCHHHHHHHHHHH
Confidence 3445555554 3345689999 8899998888777664333332 23 67899999 6899999999999998
Q ss_pred ---CCeeeccCC
Q psy10531 555 ---GCNVLCPQE 563 (564)
Q Consensus 555 ---g~~v~~~~~ 563 (564)
+.++..|++
T Consensus 248 ~~~~~~~~~p~~ 259 (277)
T PRK13317 248 KLRNCTPIFLEN 259 (277)
T ss_pred hcCCceEEecCC
Confidence 788887764
No 72
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=93.31 E-value=0.56 Score=44.72 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=45.0
Q ss_pred EEEEEeCccceEEEEEeC--CC--CEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEeC
Q psy10531 4 LLSVDVGTSSVRAALVST--RG--KVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVDA 77 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~--~G--~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~ 77 (564)
++|||+||+++|+++... +| +++.....| ..--..| .-.|.+..-+++.++++++- .+...++ ..+++++
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~--s~gi~~G-~I~d~~~~~~~I~~ai~~ae~~~~~~i~~-V~v~i~g 76 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVP--SRGIRKG-VIVDIEAAARAIREAVEEAERMAGVKIDS-VYVGISG 76 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEec--CCCccCc-EEECHHHHHHHHHHHHHHHHHHhCCcccE-EEEEEcC
Confidence 479999999999998864 44 445544332 1111233 34688888888888888875 3433333 3466665
Q ss_pred C
Q psy10531 78 T 78 (564)
Q Consensus 78 q 78 (564)
.
T Consensus 77 ~ 77 (187)
T smart00842 77 R 77 (187)
T ss_pred C
Confidence 4
No 73
>KOG1794|consensus
Probab=91.70 E-value=0.85 Score=46.08 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=53.3
Q ss_pred CcEEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHH--hcCCCCC-eEEEEE
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT--KDVNPAQ-IKGVGV 75 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~--~~~~~~~-I~aIgi 75 (564)
|.++.||+=|.|+.|.+++|++++++..+....+-+.. .+.+..-+.+.+.++++. ++.+++. ++++|+
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~Tnh~~------ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL 73 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGTILGRAVGGGTNHWL------IGSTTCASRIEDMIREAKEKAGWDKKGPLRSLGL 73 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCCEeeEeecccccccc------CCchHHHHHHHHHHHHHHhhcCCCccCccceeee
Confidence 35899999999999999999999999988766554432 234567778888888887 5666665 777776
No 74
>PRK13317 pantothenate kinase; Provisional
Probab=91.68 E-value=0.2 Score=51.05 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=25.3
Q ss_pred CcEEEEEEeCccceEEEEEeCCCCEEEEE
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIA 29 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~G~il~~~ 29 (564)
|.+.+|||+|+|.+|.+++|.+++++...
T Consensus 1 m~~~iGIDiGstt~K~v~~~~~~~~~~~~ 29 (277)
T PRK13317 1 MEMKIGIDAGGTLTKIVYLEEKKQRTFKT 29 (277)
T ss_pred CCceEEEEeCcccEEEEEEcCCCeEEEEe
Confidence 78999999999999999999988776443
No 75
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=91.53 E-value=1.1 Score=46.86 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=25.2
Q ss_pred eeEeccccCchhHHHHHHHhhCCChHHHHHhhccCCchhHHHHHHHHHhhc
Q psy10531 312 THLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQ 362 (564)
Q Consensus 312 ~~~~~~~~~~~G~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 362 (564)
--+++.+..++|++++-+.+.+. ..++++.+.+.+.
T Consensus 254 f~mN~~CAAGtGrFLE~~A~~Lg---------------v~v~E~~~~A~~~ 289 (396)
T COG1924 254 FTMNDKCAAGTGRFLEVIARRLG---------------VDVEELGKLALKA 289 (396)
T ss_pred eEeccccccccchHHHHHHHHhC---------------CCHHHHHHHHhcC
Confidence 34567788899999998877653 2356677666554
No 76
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=91.32 E-value=0.48 Score=48.44 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=39.0
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHh--cCCCCCeEEEEEeCC
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTK--DVNPAQIKGVGVDAT 78 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~--~~~~~~I~aIgis~q 78 (564)
+++|||+|+|++|++|+| +++++.....++. .++. +++.+++++++. +....++..++.|+.
T Consensus 33 ~~~GIDiGStt~K~Vlld-~~~i~~~~~~~tg----------~~~~---~~a~~~l~~~l~~~g~~~~~v~~~~~TGy 96 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVC-DGELYGYNSMRTG----------NNSP---DSAKNALQGIMDKIGMKLEDINYVVGTGY 96 (293)
T ss_pred EEEEEEeCchhEEEEEEe-CCEEEEEEeecCC----------CCHH---HHHHHHHHHHHHHcCCcccceEEEEEECc
Confidence 789999999999999999 4666655433322 1222 234455555542 333457887877654
No 77
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=91.29 E-value=0.43 Score=50.34 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=24.4
Q ss_pred EEEEEeCccceEEEEEeCCCCEEEEEEe
Q psy10531 4 LLSVDVGTSSVRAALVSTRGKVSPIAVR 31 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~G~il~~~~~ 31 (564)
+|.|..|+||+|+++|+.+++++.+...
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~~~ 29 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEETLR 29 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeeeec
Confidence 7899999999999999999988865533
No 78
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=90.96 E-value=1.1 Score=45.47 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhcCCeeeccC
Q psy10531 504 YLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562 (564)
Q Consensus 504 ~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~~~ 562 (564)
.++.+|-+.-.++..++ + .. ++.|+++||+|+-+.+.+.+++.||.||.++.
T Consensus 202 i~~~~~~i~~~i~~~l~---~--~~--~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~ 253 (267)
T PRK15080 202 VKPVVEKMASIVARHIE---G--QD--VEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQ 253 (267)
T ss_pred HHHHHHHHHHHHHHHHh---c--CC--CCEEEEECCcccchhHHHHHHHHhCCCcccCC
Confidence 55555555555554443 2 24 78999999999999999999999999998764
No 79
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=90.89 E-value=1.1 Score=47.70 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=45.4
Q ss_pred EEEEEeCccceEEEEEeC--CC--CEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEeC
Q psy10531 4 LLSVDVGTSSVRAALVST--RG--KVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVDA 77 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~--~G--~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~ 77 (564)
++|||+||+++|+++... ++ +++.....|.. --..| .-.|.+..-+++.++++++- .+...++ ..+++++
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~--gi~~G-~I~d~~~~~~~i~~al~~~e~~~~~~i~~-v~~~v~g 77 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSR--GIKKG-VINDIEAAVGSIQRAIEAAELMAGCEIRS-VIVSISG 77 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC--CccCc-EEEcHHHHHHHHHHHHHHHHHHhCCcccE-EEEEEcc
Confidence 689999999999999764 34 44455444322 11233 34688888888888888764 3333333 4466765
Q ss_pred C
Q psy10531 78 T 78 (564)
Q Consensus 78 q 78 (564)
.
T Consensus 78 ~ 78 (371)
T TIGR01174 78 A 78 (371)
T ss_pred c
Confidence 4
No 80
>PTZ00288 glucokinase 1; Provisional
Probab=90.88 E-value=1.4 Score=47.34 Aligned_cols=55 Identities=11% Similarity=0.161 Sum_probs=38.6
Q ss_pred cEEEEEEeCccceEEEEEeC---CCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHh
Q psy10531 2 EYLLSVDVGTSSVRAALVST---RGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTK 63 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~---~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~ 63 (564)
.|+||+|||+|++|.++++. ++..+...++++++. .+|..+..+.+.+.+.++.+
T Consensus 26 ~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~ 83 (405)
T PTZ00288 26 PIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNVT-------KTDIRELLEFFDEVLQKLKK 83 (405)
T ss_pred CeEEEEEecCCceEEEEEeccCCCCCceeEEEEecccc-------cccHHHHHHHHHHHHHHHHh
Confidence 37999999999999999986 333444455554411 35667777777777777763
No 81
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=90.77 E-value=0.53 Score=48.84 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=27.5
Q ss_pred EEEEeCccceEEEEEeCCCCEEEEEEeeccc
Q psy10531 5 LSVDVGTSSVRAALVSTRGKVSPIAVRPIAL 35 (564)
Q Consensus 5 LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~ 35 (564)
||+|||+-++|++++|.+|++....+.+.|+
T Consensus 1 ~G~DiGGA~~K~a~~~~~g~~~~v~~~~~pl 31 (318)
T TIGR03123 1 LGIDIGGANTKAAELDEDGRIKEVHQLYCPL 31 (318)
T ss_pred CccccccceeeeEEecCCCceeEEEEecCcc
Confidence 6999999999999999999988887777665
No 82
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=90.40 E-value=1.7 Score=47.02 Aligned_cols=72 Identities=15% Similarity=0.215 Sum_probs=47.2
Q ss_pred EEEEEEeCccceEEEEEe--CCC--CEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEe
Q psy10531 3 YLLSVDVGTSSVRAALVS--TRG--KVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVD 76 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d--~~G--~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis 76 (564)
+++|||+||+++|+++.. .+| +++...+.|.. --..| .-.|.+..-+++.++++++- .+.+..++. ++++
T Consensus 9 ~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s~--gi~~G-~I~d~~~~~~aI~~av~~ae~~~g~~i~~v~-v~i~ 84 (420)
T PRK09472 9 LVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR--GMDKG-GVNDLESVVKCVQRAIDQAELMADCQISSVY-LALS 84 (420)
T ss_pred EEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccCC--CccCC-EEEcHHHHHHHHHHHHHHHHHHhCCcccEEE-EEec
Confidence 688999999999999776 355 34555544411 11233 45688888888888888875 344444433 6776
Q ss_pred CC
Q psy10531 77 AT 78 (564)
Q Consensus 77 ~q 78 (564)
+.
T Consensus 85 g~ 86 (420)
T PRK09472 85 GK 86 (420)
T ss_pred Cc
Confidence 54
No 83
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=90.28 E-value=0.59 Score=49.06 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc--CCCCCCCEEEEEcCCcccHHHHHHHhhhcCCeeeccC
Q psy10531 504 YLATIQALAYGTRHIMDAMHAA--GKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562 (564)
Q Consensus 504 ~~A~~Egva~~~~~~~~~l~~~--g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~~~ 562 (564)
++.+++-++-++++.++.+... +.+ +++|+++||+++.+-+.+.+++-||.||++..
T Consensus 248 l~~~~~~l~~EI~rsl~~y~~~~~~~~--i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~ 306 (340)
T PF11104_consen 248 LRPFLEELAREIRRSLDFYQSQSGGES--IERIYLSGGGARLPGLAEYLSEELGIPVEVIN 306 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC--CCEEEEECCccchhhHHHHHHHHHCCceEEcC
Confidence 7789999999999999977542 445 99999999999999999999999999998753
No 84
>PRK13320 pantothenate kinase; Reviewed
Probab=89.67 E-value=1.2 Score=44.55 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=23.1
Q ss_pred CcEEEEEEeCccceEEEEEeCCCCEEEEE
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIA 29 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~G~il~~~ 29 (564)
|+++|.||+|-|++|.++++ +++++...
T Consensus 1 ~~M~L~iDiGNT~ik~~~~~-~~~~~~~~ 28 (244)
T PRK13320 1 VSMNLVIDIGNTTTKLAVFE-GDELLEVF 28 (244)
T ss_pred CceEEEEEeCCCcEEEEEEE-CCEEEEEE
Confidence 67799999999999999999 45666544
No 85
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=89.36 E-value=0.66 Score=48.13 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.2
Q ss_pred EEEEeCccceEEEEEeCCCCEEEEE
Q psy10531 5 LSVDVGTSSVRAALVSTRGKVSPIA 29 (564)
Q Consensus 5 LgIDiGTTsvKa~l~d~~G~il~~~ 29 (564)
|.+|+|+|++|.+++|.+|+++...
T Consensus 1 l~~DIGGT~i~~glvd~~g~~l~~~ 25 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPGEISQA 25 (316)
T ss_pred CeEecCcceeeEEEEecCCCceeee
Confidence 5799999999999999988766543
No 86
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=88.76 E-value=1.1 Score=47.50 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=40.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhcCC-eeecc
Q psy10531 496 SETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGC-NVLCP 561 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~-~v~~~ 561 (564)
+++|+ .+-+.|=.|.++.+.++.+ ... +.+|+++|||++|+.+++.+...+.. +|...
T Consensus 258 ~~~D~---~aTlt~~TA~sI~~~i~~~---~~~--~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~ 316 (364)
T PF03702_consen 258 SPEDI---LATLTEFTAQSIADAIRRF---PPQ--PDEVYVCGGGARNPFLMERLQERLPGIPVKTT 316 (364)
T ss_dssp -HHHH---HHHHHHHHHHHHHHHHHHH----TT---EEEEEESGGGG-HHHHHHHHHH-TTCEEEEG
T ss_pred ChHHH---HHHHHHHHHHHHHHHHHhc---CCC--CceEEEECCCcCCHHHHHHHHhhCCCCEEecH
Confidence 58888 6677776666665555544 333 68999999999999999999998764 77654
No 87
>PF13941 MutL: MutL protein
Probab=88.69 E-value=1.6 Score=47.58 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=38.2
Q ss_pred EEEEEeCccceEEEEEe---CCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHH
Q psy10531 4 LLSVDVGTSSVRAALVS---TRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d---~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~ 62 (564)
+|.+|+|+|-+|+.+|| .+.++++..+.|++. +. .++...+.++++++.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv--------~~--~Dv~~G~~~A~~~l~ 53 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTV--------EP--GDVTIGLNNALEQLE 53 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCc--------Cc--ccHHHHHHHHHHHHH
Confidence 68899999999999999 468899999888764 21 356667777777765
No 88
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=88.49 E-value=1.1 Score=44.56 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhcCCeeeccC
Q psy10531 504 YLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562 (564)
Q Consensus 504 ~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~~~ 562 (564)
+...++.+.-.++..++ + .+ ++.|+++||+|+.+.+.+.+.+.||.||.++.
T Consensus 175 i~~~~~~i~~~i~~~l~---~--~~--~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~ 226 (239)
T TIGR02529 175 VKPVYQKMASIVKRHIE---G--QG--VKDLYLVGGACSFSGFADVFEKQLGLNVIKPQ 226 (239)
T ss_pred HHHHHHHHHHHHHHHHH---h--CC--CCEEEEECchhcchhHHHHHHHHhCCCcccCC
Confidence 55666666666665554 2 23 67999999999999999999999999997754
No 89
>PLN02914 hexokinase
Probab=88.47 E-value=1.1 Score=49.19 Aligned_cols=58 Identities=17% Similarity=0.359 Sum_probs=42.4
Q ss_pred EEEEEEeCccceEEEEEeCCCC---EEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHh
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGK---VSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTK 63 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~---il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~ 63 (564)
.+|+||+|+||.|+++++..|+ ++...+..+++ ++....-..+++|+-+.++|.+.+.
T Consensus 96 ~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~i---p~~l~~gt~~eLFdfIA~~i~~fl~ 156 (490)
T PLN02914 96 LFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSI---PQELMFGTSEELFDFIASGLANFVA 156 (490)
T ss_pred EEEEEecCCceEEEEEEEecCCCCceeeeeEEEecC---ChhhccCCHHHHHHHHHHHHHHHHH
Confidence 4899999999999999998663 45544444432 2223345678999999999999883
No 90
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=87.99 E-value=1.1 Score=47.37 Aligned_cols=58 Identities=21% Similarity=0.196 Sum_probs=41.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhcCCeeec
Q psy10531 495 SSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLC 560 (564)
Q Consensus 495 ~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~ 560 (564)
.+++|+ .+-+.|=.|..+.+.+..+ ... .++|+++|||++|+.+++.+...+..+|..
T Consensus 259 ~s~~D~---~aTlt~~TA~sI~~~~~~~---~~~--~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~ 316 (365)
T PRK09585 259 LSPEDV---QATLTELTAASIARAVRRL---PPG--PDELLVCGGGARNPTLMERLAALLPTEVAT 316 (365)
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHHhc---cCC--CCEEEEECCCcchHHHHHHHHHhcCCcccC
Confidence 368888 5566665555555555333 223 568999999999999999999988655544
No 91
>PLN02362 hexokinase
Probab=86.63 E-value=1.5 Score=48.47 Aligned_cols=57 Identities=18% Similarity=0.374 Sum_probs=39.3
Q ss_pred EEEEEEeCccceEEEEEeCCCC---EEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHH
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGK---VSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~---il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~ 62 (564)
.+|+||+|+||.|+++++..|+ .+...+..+++ |+ .-..-..+++|+-+.++|.+.+
T Consensus 96 ~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~I--p~-~l~~~~~~eLFd~IA~~i~~fl 155 (509)
T PLN02362 96 TYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPI--PQ-HLMNSTSEVLFDFIASSLKQFV 155 (509)
T ss_pred eEEEEecCCceEEEEEEEecCCCcceeeceeEEEec--Ch-hhccCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999998763 22221122221 11 1123467889999999999988
No 92
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=86.22 E-value=2.4 Score=44.33 Aligned_cols=56 Identities=21% Similarity=0.316 Sum_probs=39.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhc-CCeee
Q psy10531 496 SETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVT-GCNVL 559 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~-g~~v~ 559 (564)
+++|+ .+...|-.+ ..+++...-.... .++++++||+++|+++|+.+|..+ |.+|.
T Consensus 264 ~a~Dv---~aTL~eltA---~tIv~s~~~~~~~--p~~l~vcGGG~~N~llm~rLa~l~~g~~V~ 320 (371)
T COG2377 264 NAEDV---QATLVELTA---ATIVKSVATLQGD--PRRLVVCGGGRRNPLLMARLAALLEGVEVA 320 (371)
T ss_pred CHHHH---HHHHHHHHH---HHHHHHHhhccCC--CceeEeecCCccCHHHHHHHHHhcCCCeee
Confidence 67888 556666444 4444544422223 689999999999999999999999 54554
No 93
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.04 E-value=1.8 Score=49.47 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=29.4
Q ss_pred CcEEEEEEeCccceEEEEEeCCCCEEEEEEeecc
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIA 34 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~ 34 (564)
|++.+|||+|+|.+=++++|.++.++...+.+++
T Consensus 1 ~~~~iGID~GGTfTDaV~~~~~~g~~~~~K~lTt 34 (674)
T COG0145 1 MMLRIGIDVGGTFTDAVLLDEDGGVLATIKVLTT 34 (674)
T ss_pred CceEEEEEcCCCcEeEEEEeCCCCEEEEEEccCC
Confidence 7889999999999999999998777877766644
No 94
>PRK13326 pantothenate kinase; Reviewed
Probab=85.82 E-value=3.1 Score=42.09 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=29.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCEEEEEcCCcc
Q psy10531 495 SSETSLVTLYLATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLAK 542 (564)
Q Consensus 495 ~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~-g~~~~~~~i~~~GG~a~ 542 (564)
+|...+ -..++-|.+..+..+++.+++. +.+ -.++++||.++
T Consensus 186 nT~~aI---~sGi~~g~~~~I~g~i~~~~~e~~~~---~~vv~TGG~a~ 228 (262)
T PRK13326 186 STSDSV---NSGVIYQYKYLIEGVYHDLKRNYDRE---FNLIITGGNSN 228 (262)
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCC---CEEEEECCCHH
Confidence 356666 5577778888888888887664 323 36899999654
No 95
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=85.72 E-value=2 Score=45.76 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=15.4
Q ss_pred eEeccccCchhHHHHHHHhhC
Q psy10531 313 HLLESGQSATGKLLDHIINNH 333 (564)
Q Consensus 313 ~~~~~~~~~~G~~l~w~~~~~ 333 (564)
..+.-+..++|++|+-+.+.+
T Consensus 267 ~MNdkCAAGTGrFLE~~A~~L 287 (404)
T TIGR03286 267 TMGGICAGASGRFLEMTAKRL 287 (404)
T ss_pred EEcCcccccCcHHHHHHHHHh
Confidence 445567778999998877654
No 96
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=85.31 E-value=17 Score=37.06 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=49.1
Q ss_pred CCCccccEec-C-----CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-CcccHHHHHHHhhh
Q psy10531 481 DVDMKGMICG-L-----TLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGG-LAKNPLYVQTHADV 553 (564)
Q Consensus 481 ~~~~~g~~~G-l-----~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG-~a~s~~~~q~~Adv 553 (564)
+.+..++-+| + ....+++|+ .++++..|+..+-.+- .+.+.-.. +++|++.|| ...++..++.++..
T Consensus 181 ~~d~iASsfGkv~~~~~~~~~~~eDi---AaSLl~mV~~nIg~lA-~~~a~~~~--~~~IvF~Gg~L~~~~~l~~~~~~~ 254 (279)
T TIGR00555 181 DGSLTASSFGKVLSKHLDQSFSPEDI---AASLLGLIGNNIGQIA-YLCALRYN--IDRIVFIGSFLRNNQLLMKVLSYA 254 (279)
T ss_pred CcceeeeccchhhccccccCCCHHHH---HHHHHHHHHHHHHHHH-HHHHHHcC--CCeEEEECCcccCCHHHHHHHHHH
Confidence 3444555555 2 334589999 8899999999776554 33332222 679999999 77899999999988
Q ss_pred cC
Q psy10531 554 TG 555 (564)
Q Consensus 554 ~g 555 (564)
+.
T Consensus 255 ~~ 256 (279)
T TIGR00555 255 TN 256 (279)
T ss_pred Hh
Confidence 75
No 97
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=85.09 E-value=2.3 Score=40.76 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=26.1
Q ss_pred cEEEEEEeCccceEEEEEeCCCCEEEEEE
Q psy10531 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAV 30 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~~G~il~~~~ 30 (564)
++.+|+|+||.++-..++|.||+.++-.-
T Consensus 29 k~~vGVDLGT~~iV~~vlD~d~~Pvag~~ 57 (277)
T COG4820 29 KLWVGVDLGTCDIVSMVLDRDGQPVAGCL 57 (277)
T ss_pred ceEEEeecccceEEEEEEcCCCCeEEEEe
Confidence 47899999999999999999999987763
No 98
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=84.94 E-value=2.4 Score=42.92 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=37.2
Q ss_pred cEEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHH
Q psy10531 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l 61 (564)
++++|||+||+++|+++.+.+++.+.....+-.. -..|. -.|.+.....+..+++.+
T Consensus 24 ~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~--vr~G~-i~di~~a~~~i~~~~~~a 80 (267)
T PRK15080 24 PLKVGVDLGTANIVLAVLDEDGQPVAGALEWADV--VRDGI-VVDFIGAVTIVRRLKATL 80 (267)
T ss_pred CEEEEEEccCceEEEEEEcCCCCEEEEEeccccc--cCCCE-EeeHHHHHHHHHHHHHHH
Confidence 3789999999999999998887766655443322 12333 456665555555555443
No 99
>PLN02596 hexokinase-like
Probab=84.83 E-value=1.9 Score=47.43 Aligned_cols=58 Identities=12% Similarity=0.265 Sum_probs=41.0
Q ss_pred EEEEEEeCccceEEEEEeCCCC---EEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHh
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGK---VSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTK 63 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~---il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~ 63 (564)
.+|+||+|+||.|+++++..|+ +....+..+++ ++....-..+++|+-+.++|.+.+.
T Consensus 97 ~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~I---p~~l~~~t~~eLFd~IA~~i~~fl~ 157 (490)
T PLN02596 97 LYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISI---PSNVLNGTSQELFDYIALELAKFVA 157 (490)
T ss_pred EEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecC---ChHhhcCCHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999764 23333333332 1222334678899999999999883
No 100
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=84.47 E-value=4.2 Score=42.64 Aligned_cols=47 Identities=9% Similarity=0.148 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHhh-hcc-cCccEEeccccch--hhhhhhhhcCCccee
Q psy10531 403 TSLVTLYLATIQALADV-TKD-VNPAQIKGVGVDA--TCSLVALDTNHQPLT 450 (564)
Q Consensus 403 ~~l~~~~~~~i~~l~~~-~~~-~~~~~~~ggg~~~--~~~~~a~~~~~~~~~ 450 (564)
+.|+.-...+|+..... .+. +++|+++|||++- |.++++..+| .||.
T Consensus 253 ~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~-~~v~ 303 (340)
T PF11104_consen 253 EELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELG-IPVE 303 (340)
T ss_dssp HHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHC-CceE
Confidence 44555566677755554 344 9999999999997 9999999998 4444
No 101
>PLN02405 hexokinase
Probab=84.29 E-value=2.1 Score=47.18 Aligned_cols=57 Identities=23% Similarity=0.444 Sum_probs=41.7
Q ss_pred EEEEEEeCccceEEEEEeCCCC---EEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHH
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGK---VSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~---il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~ 62 (564)
.+|+||+|+||.|++++...|+ .+...+..+++ | +....-..+++|+-+.++|.+.+
T Consensus 96 ~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~i--p-~~~~~gt~~~LFdfIA~~i~~fl 155 (497)
T PLN02405 96 LFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSI--P-PHLMTGSSDALFDFIAAALAKFV 155 (497)
T ss_pred eEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeec--C-hhhccCCHHHHHHHHHHHHHHHH
Confidence 4899999999999999998763 44444444432 2 22334567889999999999987
No 102
>PTZ00107 hexokinase; Provisional
Probab=84.18 E-value=3.1 Score=45.60 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=40.3
Q ss_pred EEEEEEeCccceEEEEEeCCCC-EEEEEEeeccc--cC---CCCC-ccccCHHHHHHHHHHHHHHHHh
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGK-VSPIAVRPIAL--WC---PKPQ-LYEQSSEDIWNSVCLAIRDVTK 63 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~-il~~~~~~~~~--~~---~~~g-~~eqd~~~~~~~i~~~l~~l~~ 63 (564)
.+|+||+|+|+.|++++...|+ .....+..+.+ .. +.+. -.+...+++|+-+.++|.+.+.
T Consensus 75 ~fLAlDlGGTN~RV~~V~L~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~ 142 (464)
T PTZ00107 75 VYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMME 142 (464)
T ss_pred eEEEEecCCceEEEEEEEeCCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999765 33233322221 11 1111 1123678999999999999883
No 103
>PRK13324 pantothenate kinase; Reviewed
Probab=84.11 E-value=4.7 Score=40.64 Aligned_cols=63 Identities=19% Similarity=0.342 Sum_probs=37.9
Q ss_pred EEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEe
Q psy10531 4 LLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVD 76 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis 76 (564)
+|.||+|-|++|.+++| +++++...+.++.- .....+++...+...++.. +.+..+|..+.+|
T Consensus 2 iL~iDiGNT~ik~gl~~-~~~~~~~~r~~t~~-------~~~t~de~~~~l~~~~~~~--~~~~~~i~~viis 64 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD-GDRIVSQIRYATSS-------VDSTSDQMGVFLRQALREN--SVDLGKIDGCGIS 64 (258)
T ss_pred EEEEEeCCCceEEEEEE-CCEEEEEEEEecCc-------cccchHHHHHHHHHHHHhc--CCCccCCCeEEEE
Confidence 68899999999999999 34565554443310 1234455555554444332 2334567777773
No 104
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=83.13 E-value=5.3 Score=40.72 Aligned_cols=26 Identities=12% Similarity=0.335 Sum_probs=22.7
Q ss_pred EEEEEeCccceEEEEEeCCCCEEEEE
Q psy10531 4 LLSVDVGTSSVRAALVSTRGKVSPIA 29 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~G~il~~~ 29 (564)
.+|||+|+|-+|.+..|.+++++...
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~~~f~~ 27 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGRRKFKT 27 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCcEEEEE
Confidence 48999999999999999999887544
No 105
>PRK03011 butyrate kinase; Provisional
Probab=83.12 E-value=2.7 Score=44.54 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCCCCCCEEEEEcCCcccHHHHHHHhhhcC
Q psy10531 504 YLATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLAKNPLYVQTHADVTG 555 (564)
Q Consensus 504 ~~A~~Egva~~~~~~~~~l~~~-g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g 555 (564)
.+.+++..++.+...+-.|-.. +.. ++.|+++||.+.++.+++.+-+-+.
T Consensus 270 A~~ald~~~~~lak~I~~l~~~L~gd--pD~IVlgGGI~~~~~l~~~I~~~l~ 320 (358)
T PRK03011 270 AKLVYEAMAYQIAKEIGAMAAVLKGK--VDAIVLTGGLAYSKRLVERIKERVS 320 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEeCccccCHHHHHHHHHHHH
Confidence 4467888888888777666543 224 6889999999888877766555443
No 106
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=82.94 E-value=2.3 Score=42.29 Aligned_cols=52 Identities=12% Similarity=-0.004 Sum_probs=33.3
Q ss_pred EEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHH
Q psy10531 6 SVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRD 60 (564)
Q Consensus 6 gIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~ 60 (564)
|||+||+++|+++.+.+++.++....+-. +-.+.+-.|.+.....+....+.
T Consensus 1 g~dig~~~ik~v~~~~~~~~~~~~~~~~~---~~~~g~I~d~~~~~~~l~~l~~~ 52 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDGQPVAGVMQFAD---VVRDGIVVDFLGAVEIVRRLKDT 52 (239)
T ss_pred CCCcccceEEEEEEecCCCEEEEEecccc---cccCCeEEEhHHHHHHHHHHHHH
Confidence 79999999999999988775555533322 22233446777665555555543
No 107
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=82.75 E-value=7.2 Score=42.10 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=43.9
Q ss_pred EEEEEEeCccceEEEEEeC--CCCEEEEEEee-ccccCCCCCccccCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEeC
Q psy10531 3 YLLSVDVGTSSVRAALVST--RGKVSPIAVRP-IALWCPKPQLYEQSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVDA 77 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~--~G~il~~~~~~-~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~ 77 (564)
++.|+|+||+.+++.+--. +|+ +...-.- .+..--..| .-.|.+..-+++.+++.++- +++...++ .+++++
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~-i~iig~g~~~SrGik~G-~I~di~~~~~sI~~av~~AE~mag~~i~~v-~vs~sG 83 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGR-LNIIGVGSHPSRGIKKG-VIVDLDAAAQSIKKAVEAAERMAGCEIKSV-IVSLSG 83 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCe-EEEEeeecccCcccccc-eEEcHHHHHHHHHHHHHHHHHhcCCCcceE-EEEecc
Confidence 7899999999999998765 343 3222111 111111233 34688888888888888875 55544332 355554
No 108
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=82.59 E-value=7.7 Score=40.57 Aligned_cols=56 Identities=14% Similarity=0.056 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc--CCCCCCCEEEEEcCCcccHHHHHHHhhhcCCeeecc
Q psy10531 504 YLATIQALAYGTRHIMDAMHAA--GKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCP 561 (564)
Q Consensus 504 ~~A~~Egva~~~~~~~~~l~~~--g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~~ 561 (564)
.+.+++-++-.++..++.+... +.+ ++.|+++||+++-+-+...++..||.||++.
T Consensus 256 ~~~~~~~l~~eI~~~l~~~~~~~~~~~--i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~ 313 (348)
T TIGR01175 256 LRRFKGELVDEIRRSLQFFTAQSGTNS--LDGLVLAGGGATLSGLDAAIYQRLGLPTEVA 313 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcc--cceEEEECccccchhHHHHHHHHHCCCeEec
Confidence 5566777777777666655332 223 6777777777777777777777777777654
No 109
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=80.73 E-value=6.1 Score=39.46 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=31.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCEEEEEcCCccc
Q psy10531 495 SSETSLVTLYLATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLAKN 543 (564)
Q Consensus 495 ~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~-g~~~~~~~i~~~GG~a~s 543 (564)
+|...+ -.+++.|.+..+..+++.+++. +.+ -.++++||.++.
T Consensus 176 ~T~~ai---~sG~~~g~~~~i~~~i~~~~~~~~~~---~~vi~TGG~a~~ 219 (243)
T TIGR00671 176 STREAV---QSGAVYGVLGLIQGLLKDWKKYFKRK---FAVVITGGDGKY 219 (243)
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCC---CEEEEECCchHh
Confidence 466667 6688888888888888887654 322 369999998765
No 110
>CHL00094 dnaK heat shock protein 70
Probab=80.58 E-value=4 Score=46.61 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=32.1
Q ss_pred HHHHHcCCCC-CCCEEEEEcCCcccHHHHHHHhhhcCCeeec
Q psy10531 520 DAMHAAGKTP-AISTLLVSGGLAKNPLYVQTHADVTGCNVLC 560 (564)
Q Consensus 520 ~~l~~~g~~~-~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~ 560 (564)
+.|++.+..+ +++.|+++||++|.|.+.++++++||.++..
T Consensus 317 ~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~ 358 (621)
T CHL00094 317 NALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQ 358 (621)
T ss_pred HHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCc
Confidence 3455555421 2789999999999999999999999987643
No 111
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=79.53 E-value=4.1 Score=42.65 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=43.1
Q ss_pred EEEEEEeCccceEEEEEeCCC---CEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCC
Q psy10531 3 YLLSVDVGTSSVRAALVSTRG---KVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVDAT 78 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G---~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis~q 78 (564)
.++|||+|++++|++.+...+ ++......+.+...-.+|. -+|.+.+-+++.+++++. +... +-..+++.+.
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g~-i~d~~~~~~~l~~~~~~~--~~~~-k~v~~alp~~ 78 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEGH-IVEYQAVAEALKELLSEL--GINT-KKAATAVPGS 78 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCCC-ccCHHHHHHHHHHHHHHc--CCCc-ceEEEEecCC
Confidence 589999999999999998533 3444445555432223343 357766666665555543 2222 2345777654
No 112
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=79.45 E-value=8.8 Score=40.38 Aligned_cols=75 Identities=8% Similarity=0.198 Sum_probs=49.5
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCC-Cccc-cCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEeCC
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKP-QLYE-QSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVDAT 78 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~-g~~e-qd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~q 78 (564)
.+||||-.+..+-++|+|.+|+++........ .+.. |-+. .....-.+.+...+++++ +++..++|.+|++|..
T Consensus 2 ~iLgIETScd~tsvAl~~~~~~il~~~~~sq~--~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~G 79 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTSDGEILSNVRETYI--TPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKG 79 (345)
T ss_pred eEEEEEccchhhEEEEEECCCcEEEEEEeecc--ccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 58999999999999999988888876644332 1111 3222 122223455666666666 4567789999999865
Q ss_pred C
Q psy10531 79 C 79 (564)
Q Consensus 79 ~ 79 (564)
.
T Consensus 80 P 80 (345)
T PTZ00340 80 P 80 (345)
T ss_pred C
Confidence 3
No 113
>PLN02666 5-oxoprolinase
Probab=78.92 E-value=4.5 Score=49.68 Aligned_cols=81 Identities=11% Similarity=0.133 Sum_probs=50.8
Q ss_pred cEEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHH-HHHHHHHHHHHHHH-------hcCCCCCeEEE
Q psy10531 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSE-DIWNSVCLAIRDVT-------KDVNPAQIKGV 73 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~-~~~~~i~~~l~~l~-------~~~~~~~I~aI 73 (564)
+|.+|||+|+|-+-++++|.++.-+...+.+.. .| .|+. -+.+.+.+++++++ .++++++|..|
T Consensus 9 ~~rigIDvGGTFTD~v~~~~~~~~~~~~K~~st--tp------~d~~~gv~~Gi~~~l~~~~~~~~~~~~~~~~~~i~~v 80 (1275)
T PLN02666 9 KFRFCIDRGGTFTDVYAEVPGGSDFRVLKLLSV--DP------ANYDDAPREGIRRILEEVTGKKIPRSAKIPTERIEWI 80 (1275)
T ss_pred CEEEEEECCcCCEeEEEEecCCCeEEEEEeCCC--CC------CChhHHHHHHHHHHHHHHhcCCcccccCCChHHccEE
Confidence 589999999999999999987664555555542 11 2333 35666666666553 13345577777
Q ss_pred EEeCC-CceEEEcCCCCc
Q psy10531 74 GVDAT-CSLVALDTNHQP 90 (564)
Q Consensus 74 gis~q-~s~v~~D~~G~p 90 (564)
..+++ .+-.++.++|..
T Consensus 81 ~hGTT~atNAllerkGa~ 98 (1275)
T PLN02666 81 RMGTTVATNALLERKGER 98 (1275)
T ss_pred EEechHHHHHHHhccCCc
Confidence 77654 333444455544
No 114
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=78.14 E-value=4 Score=43.31 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=42.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHH--HHHHHcCCCCCCCE-EEEEcCCcccHHHHHHHhhhcCCeeeccC
Q psy10531 496 SETSLVTLYLATIQALAYGTRHIM--DAMHAAGKTPAIST-LLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~~~~--~~l~~~g~~~~~~~-i~~~GG~a~s~~~~q~~Adv~g~~v~~~~ 562 (564)
++.++....++.++ .+...+ +.+++.+....+.. |+++||+|+.+...+.+.+.|+.||.+..
T Consensus 281 s~~~l~~ii~~~~~----ei~~~i~~~~L~~~~~~~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~ 346 (371)
T TIGR01174 281 SRKELAEIIEARAE----EILEIVKQKELRKSGFKEELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGL 346 (371)
T ss_pred cHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCcccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEEC
Confidence 56666332334443 333333 34555554222555 99999999999999999999999997653
No 115
>PRK13410 molecular chaperone DnaK; Provisional
Probab=77.52 E-value=5 Score=46.22 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=40.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCEEEEEcCCcccHHHHHHHhhhcCCeee
Q psy10531 496 SETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP-AISTLLVSGGLAKNPLYVQTHADVTGCNVL 559 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~-~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~ 559 (564)
++.++-.++..+++.+.-.++ +.|++.+..+ ++..|+++||++|.|.+.|++.+++|+++.
T Consensus 296 tR~~FE~l~~~l~~r~~~~i~---~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~ 357 (668)
T PRK13410 296 DRKQFESLCGDLLDRLLRPVK---RALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPN 357 (668)
T ss_pred CHHHHHHHHHHHHHHHHHHHH---HHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcc
Confidence 566553334444443333222 2344455421 278999999999999999999999998654
No 116
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=77.47 E-value=7.1 Score=42.27 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=47.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHH----HHcCCCC-CCCEEEEEcCCcccHHHHHHHhhhcCCeeecc
Q psy10531 496 SETSLVTLYLATIQALAYGTRHIMDAM----HAAGKTP-AISTLLVSGGLAKNPLYVQTHADVTGCNVLCP 561 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~~~~~~l----~~~g~~~-~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~~ 561 (564)
++.++...+++-+|.+.-.+++.++.+ .+.+... .+..|+++||+|+-+...++++++|+.||.+.
T Consensus 289 ~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~ 359 (420)
T PRK09472 289 QRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIG 359 (420)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEe
Confidence 345554436777777776777766544 3334321 15789999999999999999999999999864
No 117
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=77.32 E-value=4.9 Score=42.00 Aligned_cols=66 Identities=12% Similarity=0.153 Sum_probs=43.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCC-EEEEEcCCcccHHHHHHHhhhcCCeeeccC
Q psy10531 496 SETSLVTLYLATIQALAYGTRHIMDAMHA-AGKTPAIS-TLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~~~~~~l~~-~g~~~~~~-~i~~~GG~a~s~~~~q~~Adv~g~~v~~~~ 562 (564)
++.++...+...++.+.-.++..++.... .... .++ .|+++||+|+-+.+.+++++.+++||.+..
T Consensus 240 ~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~-~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~ 307 (336)
T PRK13928 240 TSEEIREALKEPVSAIVQAVKSVLERTPPELSAD-IIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAE 307 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHh-hcCCCEEEECcccchhhHHHHHHHHHCCCceecC
Confidence 55665333455555555555555544321 0011 144 699999999999999999999999987654
No 118
>PRK14878 UGMP family protein; Provisional
Probab=77.27 E-value=6.6 Score=40.94 Aligned_cols=61 Identities=11% Similarity=0.076 Sum_probs=47.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhc---CCeeeccC
Q psy10531 496 SETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVT---GCNVLCPQ 562 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~~v~~~~ 562 (564)
++.++ .+++.+.++-.+-++.+...+. .. +++|.++||.+.|..+++.+.+.+ |.+|.+++
T Consensus 213 ~~~di---Aa~fq~~l~~~l~~~~~~~~~~-~g--~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 276 (323)
T PRK14878 213 RLEDV---CYSLRETAFAMLVEVTERALAH-TG--KKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVP 276 (323)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHH-hC--CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 35788 6688888877777776655442 12 668999999999999999999987 78887765
No 119
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.00 E-value=7.3 Score=40.30 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhcCCeeecc
Q psy10531 504 YLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCP 561 (564)
Q Consensus 504 ~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~~ 561 (564)
.+-+++-+.-.+++.++-+....-...++.|+++||+++-.-+-+.+.+-++.|+++.
T Consensus 261 l~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~va 318 (354)
T COG4972 261 LRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVA 318 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCeEee
Confidence 5667777777777777766543211117778888888877777777887777777764
No 120
>PRK13331 pantothenate kinase; Reviewed
Probab=76.77 E-value=6.4 Score=39.52 Aligned_cols=42 Identities=12% Similarity=0.269 Sum_probs=29.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcc
Q psy10531 495 SSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAK 542 (564)
Q Consensus 495 ~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~ 542 (564)
+|...+ -..++-|.+..+..+++.+++.-.+ -+++++||.|+
T Consensus 174 nT~~ai---~sGi~~g~~g~i~~~i~~~~~~~~~---~~vi~TGG~a~ 215 (251)
T PRK13331 174 NTQEAI---QSGVIYTILAGLRDFIEDWLSLFPD---GKIVLTGGDGE 215 (251)
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHHHcCC---CEEEEECCCHH
Confidence 356666 5677888888888888877664223 36999999753
No 121
>PRK09604 UGMP family protein; Validated
Probab=76.23 E-value=11 Score=39.43 Aligned_cols=76 Identities=14% Similarity=0.164 Sum_probs=45.9
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeecc-ccCCCCCcc-ccCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEeCC
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIA-LWCPKPQLY-EQSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVDAT 78 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~-~~~~~~g~~-eqd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~q 78 (564)
++||||-.+..+-++++|.+++++........ .+.+..|-. +.....--+.+...+++++ .++++.+|.+|+++..
T Consensus 2 ~iLgIdTS~~~~sval~~~~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~did~iavt~G 81 (332)
T PRK09604 2 LILGIETSCDETSVAVVDDGRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLEDIDAIAVTAG 81 (332)
T ss_pred eEEEEEccccceEEEEEECCCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 58999998878899999877688876543321 111112211 1112222344555566655 3556788999999754
No 122
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=74.90 E-value=7.1 Score=39.41 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=39.9
Q ss_pred EEEEEEeCccceEEEEEeCCCCEE-EEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEeCC
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVS-PIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVDAT 78 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il-~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~q 78 (564)
+++|||+|+|++|++|+|.+++.+ ......++. + ..+| .++..+++++++ .++...+|..++.|+.
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~~~~~~~~~~~~~----~---~~~~---~~~~~~~l~~~~~~~g~~~~~i~~i~~TGY 70 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGDKEECLAKRNDRI----R---QRDP---FKLAEDAYDDLLEEAGLAAADVAYCATTGE 70 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCCeeEEEEEEEecC----C---CCCH---HHHHHHHHHHHHHHcCCChhheEEEEEECC
Confidence 689999999999999999755422 222222221 1 1223 233455565655 2334468888888765
No 123
>PRK10854 exopolyphosphatase; Provisional
Probab=74.66 E-value=9.4 Score=42.51 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=43.4
Q ss_pred cEEEEEEeCccceEEEEEeCC-C--CEEEEEEeeccccC--CCCCccccCHHHHHHHHHHHHHHHH---hcCCCCCeEEE
Q psy10531 2 EYLLSVDVGTSSVRAALVSTR-G--KVSPIAVRPIALWC--PKPQLYEQSSEDIWNSVCLAIRDVT---KDVNPAQIKGV 73 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~~-G--~il~~~~~~~~~~~--~~~g~~eqd~~~~~~~i~~~l~~l~---~~~~~~~I~aI 73 (564)
+.+.+||+||.|+|..+++.+ | +++...+..+.+-. ...| +.+++ -.+..++++++.. .....+++.++
T Consensus 11 ~~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g--~Ls~e-~~~r~~~~L~~F~~~~~~~~v~~v~~v 87 (513)
T PRK10854 11 QEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDN--MLSEE-AMERGLNCLSLFAERLQGFSPANVCIV 87 (513)
T ss_pred CEEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCC--CcCHH-HHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 468899999999999999964 3 34444444443311 1122 23333 3455555665543 44555678877
Q ss_pred EEeC
Q psy10531 74 GVDA 77 (564)
Q Consensus 74 gis~ 77 (564)
+-++
T Consensus 88 ATsA 91 (513)
T PRK10854 88 GTHT 91 (513)
T ss_pred ehHH
Confidence 7643
No 124
>PRK00976 hypothetical protein; Provisional
Probab=74.16 E-value=8.4 Score=40.05 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=35.2
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeC-C
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVDA-T 78 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis~-q 78 (564)
.++|||-|||.+|.++++.+...+.+- .-++.-..=...+.++-..++.++|..|+++- +
T Consensus 2 ~~~g~dhgt~~~~~~~~~~~~~~~f~~----------------~r~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ysm 62 (326)
T PRK00976 2 MFVGIDHGTTGIRFAIIEGGKKSIFKL----------------PRTEAKSMEKSALEELEKRVPLEDIELIAVTYSM 62 (326)
T ss_pred eEEeecCCCccEEEEEEcCCceeEEEe----------------eHHHhhhccHHHHHHHhcCCChhheeEEEEeecc
Confidence 579999999999999994332222111 11121111122333444455678999999984 5
No 125
>PRK09604 UGMP family protein; Validated
Probab=74.15 E-value=8.7 Score=40.21 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=47.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhc---CCeeeccC
Q psy10531 496 SETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVT---GCNVLCPQ 562 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~~v~~~~ 562 (564)
++.++ .+++.+.++-.+.+.++...+. .. ++.|.++||.+.|...++.+.+.+ |.++.+++
T Consensus 226 ~~~~i---A~s~q~~l~~~l~~~~~~~~~~-~~--~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 289 (332)
T PRK09604 226 TKADI---AASFQAAVVDVLVIKTKRALKQ-TG--VKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPP 289 (332)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHH-hC--CCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 46788 6688887777777777665442 12 678999999999999999999998 78887765
No 126
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=73.97 E-value=6.6 Score=42.06 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=38.4
Q ss_pred EEEEEEeCccceEEEEEeCC--CCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHH
Q psy10531 3 YLLSVDVGTSSVRAALVSTR--GKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~--G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~ 62 (564)
-+|+||+|+|+.|.+++... |+..-+.+ ++. .|..=...+.++++|..+++.++..+
T Consensus 76 ~~LaiD~GGTnlRvc~V~l~g~gt~~~~~s-ks~--lp~e~~~~~~~~~l~~~iadrl~~fi 134 (466)
T COG5026 76 SVLAIDLGGTNLRVCLVVLGGDGTFDIEQS-KSF--LPVECRDSESRDELFGFIADRLAAFI 134 (466)
T ss_pred CEEEEecCCceEEEEEEEeCCCCCcccccC-ccc--CchhhccCCChHHHHHHHHHHHHHHH
Confidence 48999999999999999875 44332221 111 22221223388999999999998866
No 127
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=73.85 E-value=10 Score=39.17 Aligned_cols=61 Identities=8% Similarity=0.070 Sum_probs=46.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhc---CCeeeccC
Q psy10531 496 SETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVT---GCNVLCPQ 562 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~~v~~~~ 562 (564)
++.++ .+++.+.++-.+-+.++...+. .. +++|.++||.+.|..+++.+.+.+ |.++.+++
T Consensus 230 ~~~~i---Aasfq~~l~~~l~~~~~~~~~~-~g--~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 293 (305)
T TIGR00329 230 TKEDI---AYSFQETAFDHLIEKTKRALKD-TG--PKELVLVGGVSANKRLREMLETLCQELNVEFYYPP 293 (305)
T ss_pred cHHHH---HHHHHHHHHHHHHHHHHHHHHH-cC--CCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 36788 6688888877777776655442 12 678999999999999999998887 66777664
No 128
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=73.51 E-value=7.3 Score=44.53 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=42.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCEEEEEcCCcccHHHHHHHhhhcCCeeec
Q psy10531 495 SSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP-AISTLLVSGGLAKNPLYVQTHADVTGCNVLC 560 (564)
Q Consensus 495 ~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~-~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~ 560 (564)
-++.++-.+...+++.+.-.++ +.|++.+..+ +++.|.++||++|.|.+.+++.+.||.++..
T Consensus 293 itR~~fe~l~~~l~~~~~~~i~---~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~ 356 (627)
T PRK00290 293 LTRAKFEELTEDLVERTIEPCK---QALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNK 356 (627)
T ss_pred ECHHHHHHHHHHHHHHHHHHHH---HHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCc
Confidence 4677774434444444333333 3344444421 2789999999999999999999999987643
No 129
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=73.50 E-value=2.9 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.1
Q ss_pred CcEEEEEEeCccceEEEEEeCCCC
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTRGK 24 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~G~ 24 (564)
|..++|||+|||+.++++++ +|+
T Consensus 1 m~~viGIDlGTt~s~va~~~-~g~ 23 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVME-GGE 23 (627)
T ss_pred CCcEEEEEeCcccEEEEEEE-CCE
Confidence 67799999999999999998 454
No 130
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=73.16 E-value=9.9 Score=39.49 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=47.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCEEEEEcCCcccHHHHHHHhhhc---CCeeeccC
Q psy10531 496 SETSLVTLYLATIQALAYGTRHIMDAMHA-AGKTPAISTLLVSGGLAKNPLYVQTHADVT---GCNVLCPQ 562 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~~~~~~l~~-~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~~v~~~~ 562 (564)
++.++ .+++.+.++-.+.+.+....+ .+ +++|.++||.+.|..+++.+.+.+ +.++.+++
T Consensus 231 ~~~~i---A~~~q~~l~~~l~~~~~~~~~~~~----~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~ 294 (314)
T TIGR03723 231 DKADI---AASFQAAVVDVLVEKTKRALKKTG----LKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPP 294 (314)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHHhC----CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 36788 668888888777777765544 33 668999999999999999999988 88887765
No 131
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=73.04 E-value=13 Score=38.16 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=38.2
Q ss_pred EEEEEeCccceEEEEEeCC-C--CEEEEEEeeccccCC--CCCccccCHHHHHHHHHHHHHHHH---hcCCCCCeEEEEE
Q psy10531 4 LLSVDVGTSSVRAALVSTR-G--KVSPIAVRPIALWCP--KPQLYEQSSEDIWNSVCLAIRDVT---KDVNPAQIKGVGV 75 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~-G--~il~~~~~~~~~~~~--~~g~~eqd~~~~~~~i~~~l~~l~---~~~~~~~I~aIgi 75 (564)
+.+||+||.++|..+++.+ + +++...+.++.+-.. ..| ..+++. .+.+.+++++.. ..+...++.+++-
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g--~i~~e~-i~~~~~~l~~f~~~~~~~~v~~i~~vaT 78 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTG--RLSEEA-IERALEALKRFAELLRGFPVDEVRAVAT 78 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCC--CcCHHH-HHHHHHHHHHHHHHHHhCCCCeEEEEEc
Confidence 4689999999999999974 3 344444444333111 122 233433 344445555543 3344456766664
No 132
>CHL00094 dnaK heat shock protein 70
Probab=72.75 E-value=3.1 Score=47.44 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=21.2
Q ss_pred cCccEEeccccch--hhhhhhhhcCC
Q psy10531 423 VNPAQIKGVGVDA--TCSLVALDTNH 446 (564)
Q Consensus 423 ~~~~~~~ggg~~~--~~~~~a~~~~~ 446 (564)
++.|.+|||+++. +.+++....|.
T Consensus 329 i~~ViLvGGssriP~v~~~l~~~fg~ 354 (621)
T CHL00094 329 IDEVVLVGGSTRIPAIQELVKKLLGK 354 (621)
T ss_pred CcEEEEECCccCChHHHHHHHHHhCC
Confidence 8999999999999 88888887773
No 133
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=72.70 E-value=5.1 Score=43.52 Aligned_cols=31 Identities=39% Similarity=0.594 Sum_probs=26.9
Q ss_pred CcEEEEEEeCccceEEEEEeC-CCCEEEEEEe
Q psy10531 1 MEYLLSVDVGTSSVRAALVST-RGKVSPIAVR 31 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~-~G~il~~~~~ 31 (564)
|.|=+++|+|||.+++-++|. +|+++++...
T Consensus 163 ~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T 194 (614)
T COG3894 163 EAYGVAVDLGTSGIRAQLVDLKSGEVVATVIT 194 (614)
T ss_pred eeeeeEEecccceeeeEEEeccCCcEEEeeec
Confidence 458899999999999999998 7999988743
No 134
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=72.27 E-value=13 Score=41.59 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=49.3
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccc-cCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEeCC
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYE-QSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVDAT 78 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~e-qd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~q 78 (564)
++||||-.+..+-++|++.+|+++...... .+.+..|-+- .....-.+.+...+++++ +++...+|.+|+++..
T Consensus 2 ~il~iets~~~~s~a~~~~~~~~~~~~~~~--~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~g 78 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDSDGDVLFNESDP--YKPPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDLVAFSQG 78 (535)
T ss_pred EEEEEEccccceEEEEEeCCCcEEEEEEee--ccCCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEECCC
Confidence 689999999999999999767888776544 2223233221 111223455666667766 4566789999999865
No 135
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=71.96 E-value=8.5 Score=43.73 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=42.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCEEEEEcCCcccHHHHHHHhhhcCCeee
Q psy10531 494 DSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP-AISTLLVSGGLAKNPLYVQTHADVTGCNVL 559 (564)
Q Consensus 494 ~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~-~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~ 559 (564)
.-++.++-.+...+++.+.-.++ +.|++.+..+ +++.|.++||++|.|...+++.+.+|.++.
T Consensus 278 ~itr~efe~l~~~ll~~i~~~i~---~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~ 341 (599)
T TIGR01991 278 KLTRDEFEALIQPLVQKTLSICR---RALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPL 341 (599)
T ss_pred EEeHHHHHHHHHHHHHHHHHHHH---HHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCC
Confidence 33677774444455554443333 3445544421 278999999999999999999999997654
No 136
>PLN02920 pantothenate kinase 1
Probab=71.81 E-value=64 Score=34.52 Aligned_cols=53 Identities=8% Similarity=0.087 Sum_probs=39.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccH-HHHHHHhhh
Q psy10531 495 SSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNP-LYVQTHADV 553 (564)
Q Consensus 495 ~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~-~~~q~~Adv 553 (564)
.+++|+ .|+++--|++++-++- .|.+.-.. +++|+++|...+++ ..++.++-.
T Consensus 268 ~s~eDi---a~SLL~mVs~nIgqiA-~L~A~~~~--ik~Ivf~G~fir~~~~tm~~ls~a 321 (398)
T PLN02920 268 YKPEDV---ARSLLRMISNNIGQIS-YLNALRFG--LKRIFFGGFFIRGHSYTMDTISVA 321 (398)
T ss_pred CCHHHH---HHHHHHHHHHHHHHHH-HHHHHHcC--CCEEEEEeecccCcHHHHHHHHHH
Confidence 469999 8899999999988764 34433333 78999999999887 556655543
No 137
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=71.67 E-value=11 Score=39.65 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhc---CCeeeccC
Q psy10531 497 ETSLVTLYLATIQALAYGTRHIMDA-MHAAGKTPAISTLLVSGGLAKNPLYVQTHADVT---GCNVLCPQ 562 (564)
Q Consensus 497 ~~~~~~~~~A~~Egva~~~~~~~~~-l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~~v~~~~ 562 (564)
+.++ .+++.|.++-.+..-++. ++.. . +++|+++||.|.|..+++.+.+.+ |.++..|+
T Consensus 236 ~~di---aasfq~~v~~~L~~k~~~a~~~~--~--~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~ 298 (345)
T PTZ00340 236 TDDL---CFSLQETIFAMLVEVTERAMSHC--G--SNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMD 298 (345)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHh--C--CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCC
Confidence 5688 778888887776655543 3333 3 678999999999999999998886 67777664
No 138
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=71.53 E-value=9.5 Score=43.53 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=41.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCEEEEEcCCcccHHHHHHHhhhcCCeee
Q psy10531 496 SETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP-AISTLLVSGGLAKNPLYVQTHADVTGCNVL 559 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~-~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~ 559 (564)
++.++-.+...+++.+.-.++ +.|++.+..+ +++.|.++||++|.|...+++++.||.++.
T Consensus 296 tr~efe~l~~~l~~~~~~~i~---~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~ 357 (616)
T PRK05183 296 TREQFNALIAPLVKRTLLACR---RALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPL 357 (616)
T ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcC
Confidence 677664434444444333222 3455555432 278999999999999999999999997654
No 139
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=70.37 E-value=7.1 Score=40.87 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=28.2
Q ss_pred CC-EEEEEcCCcccHHHHHHHhhhcCCeeecc
Q psy10531 531 IS-TLLVSGGLAKNPLYVQTHADVTGCNVLCP 561 (564)
Q Consensus 531 ~~-~i~~~GG~a~s~~~~q~~Adv~g~~v~~~ 561 (564)
++ .|+++||+|+-+.+.+.+++.+++||.+.
T Consensus 278 ~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~ 309 (335)
T PRK13929 278 VDRGVILTGGGALLNGIKEWLSEEIVVPVHVA 309 (335)
T ss_pred cCCCEEEEchhhhhhhHHHHHHHHHCCCceeC
Confidence 44 59999999999999999999999999875
No 140
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=70.27 E-value=15 Score=37.20 Aligned_cols=55 Identities=24% Similarity=0.400 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCCCCCEEEEEcCCcccHHHHHHHhhhcC--Ceeecc
Q psy10531 505 LATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLAKNPLYVQTHADVTG--CNVLCP 561 (564)
Q Consensus 505 ~A~~Egva~~~~~~~~~l~~~-g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g--~~v~~~ 561 (564)
+-++++++|++..-+-.+... ... ++-|+++||.|++..++..+.+-+. .||.+.
T Consensus 272 ~~~~~AmayQVaKeIG~~savL~G~--vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~ 329 (358)
T COG3426 272 KLAYEAMAYQVAKEIGAMSAVLKGK--VDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVY 329 (358)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCC--CCEEEEecchhhHHHHHHHHHHHHhhhcceEec
Confidence 347788899887776666653 335 7999999999999999999888755 566554
No 141
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=70.23 E-value=4.8 Score=41.24 Aligned_cols=28 Identities=36% Similarity=0.531 Sum_probs=20.7
Q ss_pred EeCccceEEEEEeCCCCEEEEEEeeccc
Q psy10531 8 DVGTSSVRAALVSTRGKVSPIAVRPIAL 35 (564)
Q Consensus 8 DiGTTsvKa~l~d~~G~il~~~~~~~~~ 35 (564)
|-||||.|+-++|.+|+++.+.+.+..+
T Consensus 1 DWGTSnlR~~l~~~~g~vl~~~~~~~Gi 28 (287)
T PF05035_consen 1 DWGTSNLRAWLMDEDGQVLAERSSPVGI 28 (287)
T ss_dssp EE-SS-EEEEEE-CTTEEEEEEEES--C
T ss_pred CCchhhhhhheecCCCcEEeeecCCcCh
Confidence 7899999999999999999998776554
No 142
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=69.91 E-value=4.7 Score=42.06 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=40.5
Q ss_pred EEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCC
Q psy10531 6 SVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVDAT 78 (564)
Q Consensus 6 gIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis~q 78 (564)
|||=||+|+..+.+|.+|+++...+.|... +.++|..+.+.+ ++. .++..|+..+-
T Consensus 1 GIDpGT~s~dv~~~dd~g~v~~~~~ipt~~-------v~~~p~~iv~~l----~~~------~~~dlIa~psG 56 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDDDGKVIFYFSIPTEE-------VAKNPSIIVEEL----EEF------GDIDLIAGPSG 56 (343)
T ss_pred CCCCCCCcEEEEEEccCCcEEEEeeccHHH-------hhhCHHHHHHHH----Hhc------cCCCEEEeCCc
Confidence 799999999999999999999888777653 456776554333 222 35677777543
No 143
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=69.78 E-value=17 Score=36.18 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.4
Q ss_pred cEEEEEEeCccceEEEEEeCCCCEE
Q psy10531 2 EYLLSVDVGTSSVRAALVSTRGKVS 26 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~~G~il 26 (564)
+.++|||-|||.+|.+++|.++...
T Consensus 3 m~fVGiDHGTsgi~~ai~d~e~~~~ 27 (332)
T COG4020 3 MMFVGIDHGTSGIKFAIYDGEKDPE 27 (332)
T ss_pred eEEEeecCCCcceEEEEEcCCCCce
Confidence 3689999999999999999877544
No 144
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=69.71 E-value=12 Score=39.97 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-cCCCCCCCEEEEEcCCcc-cHHHHHHHhhhcC
Q psy10531 506 ATIQALAYGTRHIMDAMHA-AGKTPAISTLLVSGGLAK-NPLYVQTHADVTG 555 (564)
Q Consensus 506 A~~Egva~~~~~~~~~l~~-~g~~~~~~~i~~~GG~a~-s~~~~q~~Adv~g 555 (564)
-++|..+|.++..+-.|-. .... ++-|+++||.+. +++.++++.+.+.
T Consensus 297 la~d~~~y~i~k~Ig~~~a~l~G~--vDaivfTGGige~~~~vr~~~~~~l~ 346 (388)
T PF00871_consen 297 LALDAFAYQIAKYIGAYAAVLEGG--VDAIVFTGGIGENSALVRERICRKLW 346 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSS---SEEEEEHHHHHHTHHHHHHHHCTGG
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC--CCEEEEccccccchHHHHHHHHhhcC
Confidence 4688888888887776654 3224 788999999875 5666677766543
No 145
>PRK13410 molecular chaperone DnaK; Provisional
Probab=69.50 E-value=5.9 Score=45.58 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=20.6
Q ss_pred cCccEEeccccch--hhhhhhhhcC
Q psy10531 423 VNPAQIKGVGVDA--TCSLVALDTN 445 (564)
Q Consensus 423 ~~~~~~~ggg~~~--~~~~~a~~~~ 445 (564)
++.|.+|||+++. +.+++....|
T Consensus 329 Id~VvLVGGssRiP~V~~~l~~~fg 353 (668)
T PRK13410 329 IDEVVLVGGSTRMPMVQQLVRTLIP 353 (668)
T ss_pred CcEEEEECCccccHHHHHHHHHHcC
Confidence 8999999999999 8888888776
No 146
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=69.34 E-value=6.4 Score=39.86 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=27.0
Q ss_pred cEEEEEEeCccceEEEEEeCCCCEEEEEEee
Q psy10531 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRP 32 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~ 32 (564)
.+++.||=||||.|+-+++.+|+++.+.+-.
T Consensus 5 ~~~i~iDWGTT~~R~wL~~~dg~~l~~r~~~ 35 (306)
T COG3734 5 PAYIAIDWGTTNLRAWLVRGDGAVLAERRSE 35 (306)
T ss_pred ceEEEEecCCccEEEEEEcCCcceeeeeccc
Confidence 3789999999999999999999999876433
No 147
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=69.06 E-value=16 Score=38.10 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=45.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhc---CCeeeccC
Q psy10531 495 SSETSLVTLYLATIQALAYGTRHIMD-AMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVT---GCNVLCPQ 562 (564)
Q Consensus 495 ~~~~~~~~~~~A~~Egva~~~~~~~~-~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~~v~~~~ 562 (564)
.+++++ ..++.|.+.-.+....+ ++...+ .+++++.||.|.|..+++++.... |..+..|.
T Consensus 232 ~d~~di---a~sfQ~av~~~L~~kt~rAl~~~~----~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~ 296 (342)
T COG0533 232 EDKEDI---AASFQEAVFDMLVEKTERALKHTG----KKELVIAGGVAANSRLREMLEEMCKERGAEVYIPP 296 (342)
T ss_pred hhHHHH---HHHHHHHHHHHHHHHHHHHHHHhC----CCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCC
Confidence 367888 77888887766666554 344444 568999999999999999998865 44565554
No 148
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=69.05 E-value=9.8 Score=43.16 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=41.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCEEEEEcCCcccHHHHHHHhhhcCCeeec
Q psy10531 495 SSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP-AISTLLVSGGLAKNPLYVQTHADVTGCNVLC 560 (564)
Q Consensus 495 ~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~-~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~ 560 (564)
-++.++-.+..-+++.+.-.++ +.|++.+..+ +++.|.++||.+|.|...+++.+.+|.++..
T Consensus 291 itr~~fe~l~~~l~~~~~~~i~---~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~ 354 (595)
T TIGR02350 291 LTRAKFEELTADLVERTKEPVR---QALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNK 354 (595)
T ss_pred EeHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccC
Confidence 3677764334444443332222 2445555421 2789999999999999999999999976654
No 149
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=68.79 E-value=28 Score=32.52 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.1
Q ss_pred CcEEEEEEeCccceEEEEEeCCCCE
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTRGKV 25 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~G~i 25 (564)
|+.+||||-|++++=-++++.+|+.
T Consensus 1 ~m~iLGIDPgl~~tG~avi~~~~~~ 25 (164)
T PRK00039 1 MMRILGIDPGLRRTGYGVIEVEGRR 25 (164)
T ss_pred CCEEEEEccccCceeEEEEEecCCe
Confidence 5679999999999999999988763
No 150
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=68.57 E-value=7 Score=44.18 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=40.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCEEEEEcCCcccHHHHHHHhhhcCCeeec
Q psy10531 496 SETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP-AISTLLVSGGLAKNPLYVQTHADVTGCNVLC 560 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~-~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~ 560 (564)
++.++-.+..-+++.+.-.++.+ +++.+... +++.|.++||++|.|...+++.+.|+.++..
T Consensus 296 tr~~fe~l~~~~~~~~~~~i~~~---l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~ 358 (602)
T PF00012_consen 296 TREEFEELCEPLLERIIEPIEKA---LKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISK 358 (602)
T ss_dssp EHHHHHHHTHHHHHHTHHHHHHH---HHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-
T ss_pred ccceecccccccccccccccccc---cccccccccccceeEEecCcccchhhhhhhhhcccccccc
Confidence 67776433444444443333333 34433211 2789999999999999999999999977754
No 151
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=67.98 E-value=18 Score=40.18 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=43.6
Q ss_pred cEEEEEEeCccceEEEEEeC-CCC--EEEEEEeecccc--CCCCCccccCHHHHHHHHHHHHHHHH---hcCCCCCeEEE
Q psy10531 2 EYLLSVDVGTSSVRAALVST-RGK--VSPIAVRPIALW--CPKPQLYEQSSEDIWNSVCLAIRDVT---KDVNPAQIKGV 73 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~-~G~--il~~~~~~~~~~--~~~~g~~eqd~~~~~~~i~~~l~~l~---~~~~~~~I~aI 73 (564)
+++.+||+||.|+|..+++. +|. ++...+..+.+- ....| ..+++. .+..++++++.. ..+...+|.++
T Consensus 6 ~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e~-i~r~~~~L~~F~~~~~~~~v~~i~~v 82 (496)
T PRK11031 6 SLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDN--ALSNEA-MERGWQCLRLFAERLQDIPPSQIRVV 82 (496)
T ss_pred CEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCC--CcCHHH-HHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 47889999999999999996 343 333444444331 11222 233333 445555555543 45556788888
Q ss_pred EEeC
Q psy10531 74 GVDA 77 (564)
Q Consensus 74 gis~ 77 (564)
+-++
T Consensus 83 ATsA 86 (496)
T PRK11031 83 ATAT 86 (496)
T ss_pred EeHH
Confidence 8754
No 152
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=67.49 E-value=13 Score=33.53 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEEEeCccceEEEEEeCCCCE
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKV 25 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~i 25 (564)
.+||||+|+..+=.++-|..+.+
T Consensus 2 riL~lD~G~kriGiAvsd~~~~~ 24 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLGII 24 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTTSS
T ss_pred eEEEEEeCCCeEEEEEecCCCCe
Confidence 48999999999999999987754
No 153
>PRK11678 putative chaperone; Provisional
Probab=67.27 E-value=21 Score=39.00 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=44.2
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhcC-Ceeecc
Q psy10531 492 TLDSSETSLVTLYLATIQALAYGTRHIMD-AMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTG-CNVLCP 561 (564)
Q Consensus 492 ~~~~~~~~~~~~~~A~~Egva~~~~~~~~-~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g-~~v~~~ 561 (564)
...-++.++...++..+ -.+..+++ .+++.+.. ++.|+++||.++.|...+++.+.|| .|+...
T Consensus 366 ~~~ItR~efe~ii~~~l----~ri~~~i~~~L~~a~~~--~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g 431 (450)
T PRK11678 366 ATEISQQGLEEAISQPL----ARILELVQLALDQAQVK--PDVIYLTGGSARSPLIRAALAQQLPGIPIVGG 431 (450)
T ss_pred ceeeCHHHHHHHHHHHH----HHHHHHHHHHHHHcCCC--CCEEEEcCcccchHHHHHHHHHHCCCCcEEeC
Confidence 34447777744344444 44444443 44556766 7899999999999999999999996 566543
No 154
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=66.41 E-value=17 Score=37.79 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhh---cCCeeeccC
Q psy10531 497 ETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADV---TGCNVLCPQ 562 (564)
Q Consensus 497 ~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv---~g~~v~~~~ 562 (564)
+.++ .+++.+.++-.+-+..+...+. .. +++|.++||.+.|..+++.+.+. .|.+|.+++
T Consensus 215 ~~di---Aasfq~~l~~~l~~~a~~~~~~-~g--~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~ 277 (322)
T TIGR03722 215 LEDV---CYSLQETAFAMLVEVTERALAH-TG--KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPP 277 (322)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHH-hC--CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCC
Confidence 5788 6688888777777777665542 12 56899999999999999999994 467777654
No 155
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=65.86 E-value=9.4 Score=39.67 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=41.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCE-EEEEcCCcccHHHHHHHhhhcCCeeeccC
Q psy10531 496 SETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAIST-LLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~-i~~~GG~a~s~~~~q~~Adv~g~~v~~~~ 562 (564)
++.++...+...++.+.-.++..++..........++. |+++||+++-+.+.+.+++.++.|+.+..
T Consensus 245 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~ 312 (335)
T PRK13930 245 SSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAE 312 (335)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecC
Confidence 34555222444455555555555543211000000244 99999999999999999999999987653
No 156
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=65.41 E-value=17 Score=41.34 Aligned_cols=61 Identities=20% Similarity=0.356 Sum_probs=41.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhcCCeeec
Q psy10531 496 SETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLC 560 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~ 560 (564)
++.++-.+.+-+++-+.--++. .|++.+ ..+++.|+++||.+|.|...+++.+.+|+++..
T Consensus 278 tr~efe~l~~~l~~~~~~~i~~---~L~~a~-~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~ 338 (595)
T PRK01433 278 NKQTLEQLILPLVERTINIAQE---CLEQAG-NPNIDGVILVGGATRIPLIKDELYKAFKVDILS 338 (595)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH---HHhhcC-cccCcEEEEECCcccChhHHHHHHHHhCCCcee
Confidence 6777644344455444333333 344444 223899999999999999999999999987654
No 157
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=65.00 E-value=7.3 Score=34.24 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=27.1
Q ss_pred EEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCC---ccccCHHHHHHHHHHHHHHH
Q psy10531 4 LLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQ---LYEQSSEDIWNSVCLAIRDV 61 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g---~~eqd~~~~~~~i~~~l~~l 61 (564)
+++||+|++.++++++.. +......-.++.. .|..| ..-.|.+++-+++...+.++
T Consensus 1 i~~iDiGs~~~~~~i~~~-~~~~~~~vl~~g~-~~s~gi~~g~Itd~~~i~~~i~~a~~~A 59 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAED-GSDGYIRVLGVGE-VPSKGIKGGHITDIEDISKAIKIAIEEA 59 (120)
T ss_dssp EEEEEE-SSSEEEEEEET-TEEEEEEEES-----------HHHHH--HHHHHHHT--HHHH
T ss_pred CEEEEcCCCcEEEEEEEe-CCCCcEEEEEEec-ccccccCCCEEEEHHHHHHHHHHHHHHH
Confidence 578999999999999986 3333333333331 22222 22245555656666666554
No 158
>PRK13411 molecular chaperone DnaK; Provisional
Probab=64.83 E-value=5.4 Score=45.85 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=20.5
Q ss_pred CcEEEEEEeCccceEEEEEeCCCCE
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTRGKV 25 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~G~i 25 (564)
|.+++|||+|||+.++++++ +|+.
T Consensus 1 m~~viGIDlGTt~s~va~~~-~g~~ 24 (653)
T PRK13411 1 MGKVIGIDLGTTNSCVAVLE-GGKP 24 (653)
T ss_pred CCcEEEEEeCcccEEEEEEE-CCEE
Confidence 77899999999999999986 4543
No 159
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=64.52 E-value=11 Score=39.13 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=42.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCC-EEEEEcCCcccHHHHHHHhhhcCCeeeccC
Q psy10531 496 SETSLVTLYLATIQALAYGTRHIMDAMHAA-GKTPAIS-TLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~~~~~~l~~~-g~~~~~~-~i~~~GG~a~s~~~~q~~Adv~g~~v~~~~ 562 (564)
++.++...+...++.+.-.++..++..... ... .++ .|+++||+++-+.+.+.+.+.++.||.+..
T Consensus 241 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~-~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~ 308 (334)
T PRK13927 241 SSNEIREALQEPLSAIVEAVKVALEQTPPELAAD-IVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAE 308 (334)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhh-hhcCCEEEECchhhhhHHHHHHHHHHCCCcEecC
Confidence 455553324555555555555555433110 001 023 499999999999999999999999987753
No 160
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=64.46 E-value=14 Score=42.62 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=41.4
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCEEEEEcCCcccHHHHHHHhhhcCCeee
Q psy10531 494 DSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP-AISTLLVSGGLAKNPLYVQTHADVTGCNVL 559 (564)
Q Consensus 494 ~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~-~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~ 559 (564)
.-++.++-.++.-+++.+.-.++ +.|++.+..+ +++.|.++||.+|.|...+++.+.||.++.
T Consensus 333 ~itR~efe~l~~~l~~~~~~~i~---~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~ 396 (663)
T PTZ00400 333 KLSRAKLEELTHDLLKKTIEPCE---KCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPS 396 (663)
T ss_pred EECHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcc
Confidence 33677763333334433322222 3445555421 278999999999999999999999998764
No 161
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=63.96 E-value=14 Score=42.38 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=41.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCEEEEEcCCcccHHHHHHHhhhcCCee
Q psy10531 495 SSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP-AISTLLVSGGLAKNPLYVQTHADVTGCNV 558 (564)
Q Consensus 495 ~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~-~~~~i~~~GG~a~s~~~~q~~Adv~g~~v 558 (564)
-++.++-.+...+++.+.--++ +.|++.+..+ +++.|+++||.+|-|...+++.+.||++.
T Consensus 320 ItR~efe~l~~~l~~r~~~~v~---~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~ 381 (657)
T PTZ00186 320 ISRSKFEGITQRLIERSIAPCK---QCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDP 381 (657)
T ss_pred ecHHHHHHHHHHHHHHHHHHHH---HHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCc
Confidence 3677664434555554433333 3445555421 28899999999999999999999999754
No 162
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=63.82 E-value=7.8 Score=43.81 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=29.6
Q ss_pred HHHHcCCCC-CCCEEEEEcCCcccHHHHHHHhhhcCCeeec
Q psy10531 521 AMHAAGKTP-AISTLLVSGGLAKNPLYVQTHADVTGCNVLC 560 (564)
Q Consensus 521 ~l~~~g~~~-~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~ 560 (564)
.+...+..+ ++..|.++||.+|-|...+.+++.++++...
T Consensus 299 al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~ 339 (579)
T COG0443 299 ALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEK 339 (579)
T ss_pred HHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccc
Confidence 344444421 2788999999999999999999999965543
No 163
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=62.86 E-value=27 Score=36.10 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=47.1
Q ss_pred EEEEeCccceEEEEEeCCCCEEEEEEeeccccC-CCCCcc-ccCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEeCC
Q psy10531 5 LSVDVGTSSVRAALVSTRGKVSPIAVRPIALWC-PKPQLY-EQSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVDAT 78 (564)
Q Consensus 5 LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~-~~~g~~-eqd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~q 78 (564)
||||-.+..+-++++|.+++++..........+ ...|-+ +.....--+.+...+++++ .++++++|.+|+++..
T Consensus 1 LaidTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~G 78 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDEEGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIESNVDKSEIDLIAYTQG 78 (305)
T ss_pred CEEecCccceEEEEEECCCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 689999999999999866888877655443222 122211 2222233345556666666 4567788999999765
No 164
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=62.83 E-value=28 Score=36.14 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=45.6
Q ss_pred EEEEEeCccceEEEEEeCCCCEEEEEEeec-cccCCCCCcc-ccCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEeCC
Q psy10531 4 LLSVDVGTSSVRAALVSTRGKVSPIAVRPI-ALWCPKPQLY-EQSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVDAT 78 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~G~il~~~~~~~-~~~~~~~g~~-eqd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~q 78 (564)
+|+||--+..+-++|+|.+++++....... ..+.+..|-+ +.....--+.+...+++++ .++..++|.+|+++..
T Consensus 1 iLaIdTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~G 79 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDDGKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAG 79 (314)
T ss_pred CEEEECcccceEEEEEECCceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 589999999999999986555776655432 1122222211 1112223345555566655 3456678999999765
No 165
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=62.61 E-value=20 Score=36.02 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=33.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcc
Q psy10531 494 DSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAK 542 (564)
Q Consensus 494 ~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~ 542 (564)
.+|.+.+ -.+++-|..+.++..++.+++.... -..++++||.++
T Consensus 181 k~T~~ai---qsG~v~g~~~~i~~~~~~~k~~~~~--~~~~vltGg~~~ 224 (251)
T COG1521 181 KNTVEAI---QSGVVYGYVGLIEGLLKEIKEELKG--GDAVVLTGGLAK 224 (251)
T ss_pred cchHHHH---HHhHHHHHHHHHHHHHHHHHHHhCC--CCeEEEeCCchH
Confidence 3467777 6688888889999999988875323 357999999875
No 166
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=61.53 E-value=16 Score=38.10 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=27.8
Q ss_pred EEEEEcCCcccHHHHHHHhhhcCCeeeccC
Q psy10531 533 TLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562 (564)
Q Consensus 533 ~i~~~GG~a~s~~~~q~~Adv~g~~v~~~~ 562 (564)
.|+++||+|+-|.+.+.+++.+++||.+..
T Consensus 282 ~IvL~GGss~ipgl~e~l~~~~~~~v~~~~ 311 (333)
T TIGR00904 282 GIVLTGGGALLRNLDKLLSKETGLPVIVAD 311 (333)
T ss_pred CEEEECcccchhhHHHHHHHHHCCCceecC
Confidence 699999999999999999999999998764
No 167
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=61.44 E-value=23 Score=36.80 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=45.2
Q ss_pred EEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccc-cCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEeCC
Q psy10531 5 LSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYE-QSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVDAT 78 (564)
Q Consensus 5 LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~e-qd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~q 78 (564)
||||-.+..+-+++++.+++++....... +.+..|.+- .....--+.+...+++++ .++++++|.+|+++..
T Consensus 1 Lgiets~~~~s~al~~~~~~i~~~~~~~~--~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~g 75 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDEDGEILANVSDTY--VPEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQG 75 (322)
T ss_pred CEEeccccceEEEEEECCCeEEEEEEeec--ccCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 68998888899999987788887665443 333334331 122222334445555555 4566779999999754
No 168
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=58.97 E-value=22 Score=39.29 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=41.0
Q ss_pred cEEEEEEeCccceEEEEEeCC-C--CEEEEEEeecccc--CCCCCccccCHHHHHHHHHHHHHHH---HhcCCCCCeEEE
Q psy10531 2 EYLLSVDVGTSSVRAALVSTR-G--KVSPIAVRPIALW--CPKPQLYEQSSEDIWNSVCLAIRDV---TKDVNPAQIKGV 73 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~~-G--~il~~~~~~~~~~--~~~~g~~eqd~~~~~~~i~~~l~~l---~~~~~~~~I~aI 73 (564)
+.+.+||+||-|+|.++++.. | +++...+....+- ....| ..+++. .+...++++.. +.+...++|.++
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~~~~~~l~~~k~~vrLgegl~~~g--~L~~ea-i~R~~~aL~~f~e~~~~~~~~~v~~v 79 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITPGSFQVLFREKRIVRLGEGLDATG--NLSEEA-IERALSALKRFAELLDGFGAEEVRVV 79 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccCCccchhhhhhhheehhcCccccC--CcCHHH-HHHHHHHHHHHHHHHhhCCCCEEEEe
Confidence 567899999999999999965 4 2333332222211 11122 233333 34444555444 345566778877
Q ss_pred EEeC
Q psy10531 74 GVDA 77 (564)
Q Consensus 74 gis~ 77 (564)
+-++
T Consensus 80 ATsA 83 (492)
T COG0248 80 ATSA 83 (492)
T ss_pred hhHH
Confidence 7644
No 169
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=56.79 E-value=29 Score=38.77 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCEEEEEcCCcccHHHHHHHhhhc---CCeeeccC
Q psy10531 497 ETSLVTLYLATIQALAYGTRHIMDAMHA-AGKTPAISTLLVSGGLAKNPLYVQTHADVT---GCNVLCPQ 562 (564)
Q Consensus 497 ~~~~~~~~~A~~Egva~~~~~~~~~l~~-~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~~v~~~~ 562 (564)
..++ .+++.+.++-.+-+.++...+ .| +++|.++||.+.|..+++.+.+.+ |.+|.+++
T Consensus 218 ~~~i---A~~~q~~l~~~l~~~~~~~~~~~g----~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~ 280 (535)
T PRK09605 218 LEDV---CYSLQETAFAMLTEVTERALAHTG----KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPE 280 (535)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHhC----CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 4678 668888888877777766544 34 568999999999999999999765 67777764
No 170
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=55.98 E-value=22 Score=34.30 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=40.3
Q ss_pred EEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCC
Q psy10531 4 LLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVDAT 78 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis~q 78 (564)
+|+||-.|..+-+++++ +++++........ ....+.+...+.+++++ .++..++|.+|+++.-
T Consensus 1 iLaidTs~~~~sval~~-~~~~~~~~~~~~~---------~~h~~~l~~~i~~~l~~--~~~~~~~i~~iav~~G 63 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD-DGEILAERSEEAG---------RNHSEILLPMIEELLAE--AGLSLQDLDAIAVGVG 63 (202)
T ss_pred CEEEECCCcceEEEEEE-CCEEEEEEeehhh---------HHHHHHHHHHHHHHHHH--cCCCHHHCCEEEEecC
Confidence 48999999999999998 6777765532211 12233444444444443 3556678999998654
No 171
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=55.95 E-value=45 Score=34.70 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=34.8
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEE---eeccccCCCCCccccCHHHHHHHHHHHHHHH
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAV---RPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~---~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l 61 (564)
..+|||||++++|++-....|.-....+ .+.|.-.-.+| .-+|++.+-+++.+++.+.
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kLe~y~~~~lp~~iv~dg-~ivd~~av~~~Lk~ala~~ 71 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKLEKYASEPLPENIVADG-KIVDYDAVASALKRALAKL 71 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceeeeeeeecccCccccccC-CcccHHHHHHHHHHHHHhc
Confidence 3789999999999999997665544443 33332111222 2356666555555544443
No 172
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=55.46 E-value=28 Score=40.39 Aligned_cols=62 Identities=19% Similarity=0.235 Sum_probs=46.8
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhcC---CeeeccC
Q psy10531 495 SSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTG---CNVLCPQ 562 (564)
Q Consensus 495 ~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g---~~v~~~~ 562 (564)
.++.++ .+++.+.++-.+...++.+.+. .. ++.|+++||.++|..+++.+.+.++ .+|..++
T Consensus 629 ~~~~~I---Aa~fh~tla~~L~~~a~~~~~~-~g--~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~ 693 (711)
T TIGR00143 629 EDRSKI---AHIAHKFVASGLVEIATAIAVP-FG--IHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHR 693 (711)
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHHHHHHH-cC--CCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccC
Confidence 467788 6688888887777777665442 12 6689999999999999999988774 6776554
No 173
>PLN03184 chloroplast Hsp70; Provisional
Probab=54.68 E-value=23 Score=40.90 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=31.1
Q ss_pred HHHHcCCCC-CCCEEEEEcCCcccHHHHHHHhhhcCCeee
Q psy10531 521 AMHAAGKTP-AISTLLVSGGLAKNPLYVQTHADVTGCNVL 559 (564)
Q Consensus 521 ~l~~~g~~~-~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~ 559 (564)
.|++.+..+ +++.|.++||.+|.|...+++.+.||.++.
T Consensus 355 ~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~ 394 (673)
T PLN03184 355 ALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPN 394 (673)
T ss_pred HHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcc
Confidence 445555421 278999999999999999999999998664
No 174
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=54.37 E-value=13 Score=42.77 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=24.0
Q ss_pred hcc-cCccEEeccccch--hhhhhhhhcCCccee
Q psy10531 420 TKD-VNPAQIKGVGVDA--TCSLVALDTNHQPLT 450 (564)
Q Consensus 420 ~~~-~~~~~~~ggg~~~--~~~~~a~~~~~~~~~ 450 (564)
+.. ++.|.+|||+.+- +.+++....|..|+.
T Consensus 350 ~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~ 383 (657)
T PTZ00186 350 ELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFR 383 (657)
T ss_pred ChhhCCEEEEECCcccChHHHHHHHHHhCCCccc
Confidence 344 9999999999999 777888877744433
No 175
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=53.03 E-value=13 Score=42.29 Aligned_cols=23 Identities=4% Similarity=-0.058 Sum_probs=19.7
Q ss_pred cCccEEeccccch--hhhhhhhhcC
Q psy10531 423 VNPAQIKGVGVDA--TCSLVALDTN 445 (564)
Q Consensus 423 ~~~~~~~ggg~~~--~~~~~a~~~~ 445 (564)
++.|.+|||+++. +.+++....|
T Consensus 309 Id~ViLvGGssriP~v~~~l~~~f~ 333 (595)
T PRK01433 309 IDGVILVGGATRIPLIKDELYKAFK 333 (595)
T ss_pred CcEEEEECCcccChhHHHHHHHHhC
Confidence 9999999999999 7777776665
No 176
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=52.31 E-value=13 Score=42.94 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=22.4
Q ss_pred hcc-cCccEEeccccch--hhhhhhhhcCC
Q psy10531 420 TKD-VNPAQIKGVGVDA--TCSLVALDTNH 446 (564)
Q Consensus 420 ~~~-~~~~~~~ggg~~~--~~~~~a~~~~~ 446 (564)
+.. ++.|.+|||+++. +-+++....|.
T Consensus 364 ~~~~i~~ViLvGGssriP~v~~~l~~~f~~ 393 (663)
T PTZ00400 364 KKDELNDVILVGGMTRMPKVSETVKKIFGK 393 (663)
T ss_pred CHHHCcEEEEECCccCChHHHHHHHHHhCC
Confidence 344 8999999999999 77888887773
No 177
>PRK11678 putative chaperone; Provisional
Probab=52.11 E-value=11 Score=41.13 Aligned_cols=23 Identities=9% Similarity=0.031 Sum_probs=19.3
Q ss_pred cCccEEeccccch--hhhhhhhhcC
Q psy10531 423 VNPAQIKGVGVDA--TCSLVALDTN 445 (564)
Q Consensus 423 ~~~~~~~ggg~~~--~~~~~a~~~~ 445 (564)
++.|.+|||+++. +-+++....+
T Consensus 400 ~d~VvLvGGsSriP~V~~~l~~~fg 424 (450)
T PRK11678 400 PDVIYLTGGSARSPLIRAALAQQLP 424 (450)
T ss_pred CCEEEEcCcccchHHHHHHHHHHCC
Confidence 7899999999999 7777877665
No 178
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=52.11 E-value=37 Score=37.06 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=23.2
Q ss_pred EEeCccceEEEEEeCC-CCEEEEEEeeccc
Q psy10531 7 VDVGTSSVRAALVSTR-GKVSPIAVRPIAL 35 (564)
Q Consensus 7 IDiGTTsvKa~l~d~~-G~il~~~~~~~~~ 35 (564)
+|+|+|.+|+.+||.+ ++++..++..+++
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpT 30 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPI 30 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCcc
Confidence 5999999999999965 6777777666544
No 179
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=52.00 E-value=89 Score=28.51 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.5
Q ss_pred CcEEEEEEeCccceEEEEEeCCC
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTRG 23 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~G 23 (564)
|+.+||+|+||-.|=+++-|..+
T Consensus 1 ~~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 1 GMRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred CceEEEEecCCceEEEEEecCCC
Confidence 46789999999999999998876
No 180
>KOG1369|consensus
Probab=51.56 E-value=25 Score=38.50 Aligned_cols=57 Identities=19% Similarity=0.399 Sum_probs=37.2
Q ss_pred EEEEEEeCccceEEEEEeCCCCE--EEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHH
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKV--SPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~i--l~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~ 62 (564)
.+++||+|+|+.|..++...|.- +......|.+ | +....-..+++|+-+..++..-+
T Consensus 87 ~~lalDLGGTn~Rv~~v~L~g~~~~~~~~~~~~~i--p-~~~m~gt~~~Lfd~Ia~~l~~F~ 145 (474)
T KOG1369|consen 87 KFLALDLGGTNFRVLLVKLGGGRTSVRMYNKIYAI--P-EEIMQGTGEELFDFIARCLADFL 145 (474)
T ss_pred CEEEEecCCCceEEEEEEecCCcccceeeeeeEec--C-HHHHcCchHHHHHHHHHHHHHHH
Confidence 47999999999999999987652 3222222221 1 11111256788999888888876
No 181
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=50.78 E-value=37 Score=34.09 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.2
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEE
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSP 27 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~ 27 (564)
.+||||||+-++|++. .+|....
T Consensus 4 kilGiDIGGAntk~a~--~DG~~~~ 26 (330)
T COG1548 4 KILGIDIGGANTKIAS--SDGDNYK 26 (330)
T ss_pred eEEEeeccCccchhhh--ccCCeee
Confidence 5899999999999998 5666654
No 182
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=49.86 E-value=48 Score=30.39 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=32.7
Q ss_pred EEEEEeCccceEEEEEeCCCCEE---EEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEE
Q psy10531 4 LLSVDVGTSSVRAALVSTRGKVS---PIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGV 75 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~G~il---~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgi 75 (564)
+||||-|++++--++++.+++.+ ......++. ..+..+=+..+.+.+.+++... ++..+++
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G~I~t~~--------~~~~~~Rl~~I~~~l~~li~~~---~P~~vai 64 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYGTIKTSS--------KDSLPERLKEIYEELEELIEEY---NPDEVAI 64 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEEEEE-----------S--HHHHHHHHHHHHHHHHHHH-----SEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeCeEECCC--------CCCHHHHHHHHHHHHHHHHHhh---CCCEEEe
Confidence 69999999999999999877543 333333221 1122333456666666666433 3444555
No 183
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=49.14 E-value=35 Score=33.52 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=45.1
Q ss_pred EEEEEEeCccceEEEEEeC-CCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCC-Cc
Q psy10531 3 YLLSVDVGTSSVRAALVST-RGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNPAQIKGVGVDAT-CS 80 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~-~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~~~~~I~aIgis~q-~s 80 (564)
++|+||..|..+-+++++. +++++.+....... ...+.+...+.+.+++. +....++.+|+++.- +|
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~~~r---------~hse~l~~~i~~ll~~~--~~~~~dld~iav~~GPGS 70 (220)
T COG1214 2 KILAIDTSTSALSVALYLADDGKVLAEHTEKLKR---------NHAERLMPMIDELLKEA--GLSLQDLDAIAVAKGPGS 70 (220)
T ss_pred cEEEEEcChhhhhhheeecCCCcEEEEEEEeccc---------cHHHHHHHHHHHHHHHc--CCCHHHCCEEEEccCCCc
Confidence 4899999999999888887 67887777655431 12334444444444443 445568999999654 44
Q ss_pred e
Q psy10531 81 L 81 (564)
Q Consensus 81 ~ 81 (564)
+
T Consensus 71 F 71 (220)
T COG1214 71 F 71 (220)
T ss_pred c
Confidence 4
No 184
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=48.85 E-value=35 Score=33.51 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCC-cccHHHHHHHhhhcCCe
Q psy10531 506 ATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGL-AKNPLYVQTHADVTGCN 557 (564)
Q Consensus 506 A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~-a~s~~~~q~~Adv~g~~ 557 (564)
|.|--...++++++|.|++.|.+ .+-++..||. ..+.+|-|+=||+...+
T Consensus 163 alMTttm~~~~~viE~L~eeGiR--d~v~v~vGGApvtq~~a~~iGAD~~~~d 213 (227)
T COG5012 163 ALMTTTMIGMKDVIELLKEEGIR--DKVIVMVGGAPVTQDWADKIGADAYAED 213 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCc--cCeEEeecCccccHHHHHHhCCCccCcC
Confidence 55555567789999999999987 4445555665 57788899999987643
No 185
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=48.10 E-value=59 Score=34.07 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=50.5
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCC-CCCcc-ccCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEeCC
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCP-KPQLY-EQSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVDAT 78 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~-~~g~~-eqd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~q 78 (564)
.+|||.-.---+-+++++.++ +++.....+-..++ ..|-+ |.-...-.+.+..++++++ +++..++|.+|++|..
T Consensus 2 ~iLGIEtScDeT~vaIv~~~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~g 80 (342)
T COG0533 2 IILGIETSCDETGVAIVDEEK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAG 80 (342)
T ss_pred eEEEEEcccccceeEEEeccC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecC
Confidence 478888666677889998776 66544333222122 23333 3333345667777888877 5667789999999876
Q ss_pred CceE
Q psy10531 79 CSLV 82 (564)
Q Consensus 79 ~s~v 82 (564)
.+++
T Consensus 81 PGL~ 84 (342)
T COG0533 81 PGLG 84 (342)
T ss_pred CCch
Confidence 5544
No 186
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=47.85 E-value=75 Score=33.46 Aligned_cols=50 Identities=12% Similarity=0.276 Sum_probs=36.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCEEEEEcCCcc-cHHHHHHHh
Q psy10531 495 SSETSLVTLYLATIQALAYGTRHIMDAMHA-AGKTPAISTLLVSGGLAK-NPLYVQTHA 551 (564)
Q Consensus 495 ~~~~~~~~~~~A~~Egva~~~~~~~~~l~~-~g~~~~~~~i~~~GG~a~-s~~~~q~~A 551 (564)
.+++|+ .++++--+++++-++.-...+ .+ +++|+++|...+ ++..++.++
T Consensus 258 ~~~~Di---a~sll~mv~~nIg~la~l~A~~~~----~~~I~f~G~~~~~~~~~~~~l~ 309 (341)
T PF03630_consen 258 FSKEDI---AKSLLNMVSNNIGQLAYLHAKIHG----VKRIVFGGSFIRNNPITMRTLS 309 (341)
T ss_dssp --HHHH---HHHHHHHHHHHHHHHHHHHHHHHT------EEEEESGGGTSSCHHHHHHH
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHHHHHHHcC----CCEEEEEeccccCCHHHHHHHH
Confidence 478999 889999999999877543322 24 679999999876 567788888
No 187
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=47.16 E-value=15 Score=41.55 Aligned_cols=26 Identities=8% Similarity=0.032 Sum_probs=19.9
Q ss_pred hcc-cCccEEeccccch--hhhhhhhhcC
Q psy10531 420 TKD-VNPAQIKGVGVDA--TCSLVALDTN 445 (564)
Q Consensus 420 ~~~-~~~~~~~ggg~~~--~~~~~a~~~~ 445 (564)
+.. ++.|.++||+++. +-+++....+
T Consensus 325 ~~~~i~~V~lvGG~sr~p~v~~~l~~~f~ 353 (602)
T PF00012_consen 325 KKEDIDSVLLVGGSSRIPYVQEALKELFG 353 (602)
T ss_dssp -GGGESEEEEESGGGGSHHHHHHHHHHTT
T ss_pred cccccceeEEecCcccchhhhhhhhhccc
Confidence 344 8999999999999 7777766543
No 188
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=46.79 E-value=15 Score=41.56 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=19.9
Q ss_pred cCccEEeccccch--hhhhhhhhcC
Q psy10531 423 VNPAQIKGVGVDA--TCSLVALDTN 445 (564)
Q Consensus 423 ~~~~~~~ggg~~~--~~~~~a~~~~ 445 (564)
++.|.+|||+++. +.+++....|
T Consensus 325 i~~V~LvGGssriP~v~~~i~~~f~ 349 (595)
T TIGR02350 325 IDEVILVGGSTRIPAVQELVKDFFG 349 (595)
T ss_pred CcEEEEECCcccChHHHHHHHHHhC
Confidence 8999999999999 7777877666
No 189
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=46.65 E-value=30 Score=35.94 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=17.9
Q ss_pred EEEEeCccceEEEEEeCCCCE
Q psy10531 5 LSVDVGTSSVRAALVSTRGKV 25 (564)
Q Consensus 5 LgIDiGTTsvKa~l~d~~G~i 25 (564)
|+-|||+|++|.++++.++..
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~ 21 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGP 21 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG
T ss_pred CeEEeCcccEEEEEEEcCCCC
Confidence 567999999999999986654
No 190
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=46.45 E-value=1e+02 Score=27.82 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=20.8
Q ss_pred cEEEEEEeCccceEEEEEeCCCCE
Q psy10531 2 EYLLSVDVGTSSVRAALVSTRGKV 25 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~~G~i 25 (564)
+.+||||+|+-.+=.++-|..+.+
T Consensus 4 ~~iLalD~G~kriGvAv~d~~~~~ 27 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPLGGT 27 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCCCCE
Confidence 358999999999999999987755
No 191
>PRK13411 molecular chaperone DnaK; Provisional
Probab=45.96 E-value=36 Score=39.19 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=39.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCEEEEEcCCcccHHHHHHHhhhcC-Ceee
Q psy10531 495 SSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP-AISTLLVSGGLAKNPLYVQTHADVTG-CNVL 559 (564)
Q Consensus 495 ~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~-~~~~i~~~GG~a~s~~~~q~~Adv~g-~~v~ 559 (564)
-++.++-.+..-+++.+.-.++ +.|++.+..+ +++.|.++||.+|.|...+++.+.+| .++.
T Consensus 294 itR~~fe~l~~~l~~~~~~~i~---~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~ 357 (653)
T PRK13411 294 LTRAKFEELTKDLVEATIEPMQ---QALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPD 357 (653)
T ss_pred EcHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcC
Confidence 3677763323333333322222 3445555432 27899999999999999999999997 4443
No 192
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=45.16 E-value=50 Score=34.11 Aligned_cols=79 Identities=19% Similarity=0.223 Sum_probs=52.1
Q ss_pred ccCCCCCC--CCCCccccEecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEE--EEcCC---cccH
Q psy10531 472 FHGNRSPL--ADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLL--VSGGL---AKNP 544 (564)
Q Consensus 472 ~~G~r~P~--~~~~~~g~~~Gl~~~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~--~~GG~---a~s~ 544 (564)
-.|...|| .|....-.++.+..+|+-+++ ++| .+++--+.|.+.-.+. .++|+ +.||+ +|+.
T Consensus 132 ~~gk~~PyGiyd~~~n~g~v~vg~s~dTa~F------av~----~i~~WW~~~g~~~yp~-a~~lli~~D~GgsN~~r~r 200 (311)
T PF07592_consen 132 ALGKAIPYGIYDPAANEGWVSVGTSHDTADF------AVD----SIRRWWEEMGKARYPH-AKRLLITADNGGSNGSRRR 200 (311)
T ss_pred ccceeccceeEeccCCeEEEEEecCcccHHH------HHH----HHHHHHHHhChhhcCc-hheEEEeccCCCCccchhH
Confidence 34555665 677788888888899988888 233 3355555563221221 55654 45565 4788
Q ss_pred HH---HHHHhhhcCCeeecc
Q psy10531 545 LY---VQTHADVTGCNVLCP 561 (564)
Q Consensus 545 ~~---~q~~Adv~g~~v~~~ 561 (564)
+| +|-+||-+|++|.++
T Consensus 201 ~wk~~L~~la~~~gl~I~v~ 220 (311)
T PF07592_consen 201 LWKKRLQELADETGLSIRVC 220 (311)
T ss_pred HHHHHHHHHHHHhCCEEEEE
Confidence 88 578899999999764
No 193
>PLN03184 chloroplast Hsp70; Provisional
Probab=45.06 E-value=20 Score=41.45 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=21.2
Q ss_pred cCccEEeccccch--hhhhhhhhcCCcc
Q psy10531 423 VNPAQIKGVGVDA--TCSLVALDTNHQP 448 (564)
Q Consensus 423 ~~~~~~~ggg~~~--~~~~~a~~~~~~~ 448 (564)
++.|.+|||+++- +-+++....|..+
T Consensus 366 Id~ViLvGGssriP~V~~~i~~~fg~~~ 393 (673)
T PLN03184 366 IDEVILVGGSTRIPAVQELVKKLTGKDP 393 (673)
T ss_pred ccEEEEECCccccHHHHHHHHHHhCCCc
Confidence 8999999999999 7777877776433
No 194
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=44.79 E-value=65 Score=29.18 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=23.1
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEEEee
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRP 32 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~~~~ 32 (564)
.++|||=|||.-- +++|.+|+++...+..
T Consensus 33 lIVGiDPG~ttgi-AildL~G~~l~l~S~R 61 (138)
T PF04312_consen 33 LIVGIDPGTTTGI-AILDLDGELLDLKSSR 61 (138)
T ss_pred EEEEECCCceeEE-EEEecCCcEEEEEeec
Confidence 5789999998654 5579999999887654
No 195
>PLN02902 pantothenate kinase
Probab=43.89 E-value=2.4e+02 Score=33.36 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=39.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcc-cHHHHHHHhhhc
Q psy10531 495 SSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAK-NPLYVQTHADVT 554 (564)
Q Consensus 495 ~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~-s~~~~q~~Adv~ 554 (564)
.+++|+ .|+++--|++++-++-- |.+.-.. +++|+++|..-+ ++.-|+.++-.+
T Consensus 317 ~s~eDi---arSLL~mIs~NIGqiA~-L~A~~~~--ikrIvF~G~fIr~h~~tm~~ls~Ai 371 (876)
T PLN02902 317 YRPEDI---SLSLLRMISYNIGQISY-LNALRFG--LKRIFFGGFFIRGHAYTMDTISFAV 371 (876)
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHH-HHHHHcC--CCEEEEecceecCCcchHHHHHHHH
Confidence 479999 88999999999987753 3332223 789999999765 555577776543
No 196
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=43.68 E-value=1.2e+02 Score=27.78 Aligned_cols=54 Identities=11% Similarity=0.246 Sum_probs=32.4
Q ss_pred EEEEEeCccceEEEEEeCCCCEE---EEEEeeccccCCCCCccccCHHHHHHHHHHHHHHHHhcC
Q psy10531 4 LLSVDVGTSSVRAALVSTRGKVS---PIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDV 65 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~G~il---~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~l~~l~~~~ 65 (564)
+||||-|++++=-++++.+++.+ ....+.++ + ..+..+=+..+.+.+.+++...
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~~~g~i~t~-----~---~~~~~~rl~~I~~~l~~~i~~~ 58 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTS-----S---DAPLPSRLKTIYDGLNEVIDQF 58 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEEEeeEEECC-----C---CCCHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999998755433 22233222 1 1122233455666666666433
No 197
>PRK14878 UGMP family protein; Provisional
Probab=43.38 E-value=60 Score=33.79 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=44.7
Q ss_pred EEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccccCH-HHHHHHHHHHHHHHH--hcCCCCCeEEEEEeCC
Q psy10531 5 LSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSS-EDIWNSVCLAIRDVT--KDVNPAQIKGVGVDAT 78 (564)
Q Consensus 5 LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~eqd~-~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~q 78 (564)
||||--+.-+-++|++ ++++++...... +.+..|.+.... ..-.+.+...+++++ +++++.+|.+|+++..
T Consensus 1 l~iets~~~~s~al~~-~~~i~~~~~~~~--~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~g 74 (323)
T PRK14878 1 LGIESTAHTLGVGIVK-EDKVLANVRDTY--VPEKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQG 74 (323)
T ss_pred CEEecCCcccEEEEEE-CCEEEEEEEEec--ccCcCCcCccHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 6899888888899998 456776665433 444445443221 222334555566665 4567789999999764
No 198
>PRK12379 propionate/acetate kinase; Provisional
Probab=43.27 E-value=1.3e+02 Score=32.25 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=44.2
Q ss_pred ccccEecCCC-CCChhhHHHH-------HHHHHHHHHHHHHHHHHHHHHc-CCCCCCCEEEEEcCCccc-HHHHHHHhh
Q psy10531 484 MKGMICGLTL-DSSETSLVTL-------YLATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLAKN-PLYVQTHAD 552 (564)
Q Consensus 484 ~~g~~~Gl~~-~~~~~~~~~~-------~~A~~Egva~~~~~~~~~l~~~-g~~~~~~~i~~~GG~a~s-~~~~q~~Ad 552 (564)
-++.++|++- +.+-.++..+ .+=++|..+|.++..+-.|-.. + . ++-|+++||...| ...++.+.+
T Consensus 265 k~SGLlg~sG~s~D~R~v~~~~~~gd~~A~lA~d~f~yri~k~IGa~~a~L~-~--vDaIVFTGGIGen~~~vR~~i~~ 340 (396)
T PRK12379 265 KESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLH-R--LDGIIFTGGIGENSSLIRRLVME 340 (396)
T ss_pred ccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC-C--CCEEEECCccccCcHHHHHHHHh
Confidence 3567778776 5566666221 2237888899998888777553 4 5 8999999998754 444554443
No 199
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=43.26 E-value=44 Score=38.44 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=39.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCEEEEEcCCcccHHHHHHHhhhcC-Cee
Q psy10531 495 SSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP-AISTLLVSGGLAKNPLYVQTHADVTG-CNV 558 (564)
Q Consensus 495 ~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~-~~~~i~~~GG~a~s~~~~q~~Adv~g-~~v 558 (564)
-++.++-.+..-+++.+.-.++ +.|++.+..+ +++.|.++||.+|.|...+++.+.|+ .++
T Consensus 299 itR~~fe~l~~~l~~~~~~~i~---~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~ 361 (653)
T PTZ00009 299 ISRARFEELCGDYFRNTLQPVE---KVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEP 361 (653)
T ss_pred ECHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCC
Confidence 3676663323444443333233 3344444321 27899999999999999999999996 454
No 200
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=43.24 E-value=25 Score=36.73 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=26.6
Q ss_pred EEEEEcCCcccHHHHHHHhhhcCCeeeccCC
Q psy10531 533 TLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563 (564)
Q Consensus 533 ~i~~~GG~a~s~~~~q~~Adv~g~~v~~~~~ 563 (564)
-|+++||+|+-+-+-+.+++-+|+||.+.++
T Consensus 276 GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~ 306 (326)
T PF06723_consen 276 GIVLTGGGALLRGLDEYISEETGVPVRVADD 306 (326)
T ss_dssp -EEEESGGGGSBTHHHHHHHHHSS-EEE-SS
T ss_pred CEEEEChhhhhccHHHHHHHHHCCCEEEcCC
Confidence 4999999999999999999999999998764
No 201
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=42.83 E-value=16 Score=37.45 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEEeCccceEEEEEeCCCCEE
Q psy10531 4 LLSVDVGTSSVRAALVSTRGKVS 26 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~G~il 26 (564)
++|||-|||.+|.++++.+++..
T Consensus 1 ~vGiDHGTtgi~f~~~~~~~~~~ 23 (326)
T TIGR03281 1 FVGIDHGTTGIRFAIIDGEKEPV 23 (326)
T ss_pred CccccCCCccEEEEEecCCcceE
Confidence 47999999999999999888654
No 202
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=42.81 E-value=1.2e+02 Score=27.85 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=19.7
Q ss_pred EEEEEEeCcc----ceEEEEEeCCCCEEEEEEe
Q psy10531 3 YLLSVDVGTS----SVRAALVSTRGKVSPIAVR 31 (564)
Q Consensus 3 ~~LgIDiGTT----svKa~l~d~~G~il~~~~~ 31 (564)
.+|+|-.|.. .++++++|.+|+++...+.
T Consensus 6 rVla~~~g~g~~~~~~~~v~ld~~G~v~d~~~~ 38 (150)
T PF14639_consen 6 RVLALSWGSGDGDDAVFCVVLDENGEVLDHLKL 38 (150)
T ss_dssp -EEEEE-TT--TTS-EEEEEE-TTS-EEEEEEE
T ss_pred EEEEEEcCCCCCCCCEEEEEECCCCcEEEEEEE
Confidence 4678877744 5999999999999988866
No 203
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=42.20 E-value=82 Score=28.16 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=18.2
Q ss_pred EEEEeCccceEEEEEeCCCCE
Q psy10531 5 LSVDVGTSSVRAALVSTRGKV 25 (564)
Q Consensus 5 LgIDiGTTsvKa~l~d~~G~i 25 (564)
||||+|+..+=.++-|..+.+
T Consensus 1 laiD~G~kriGvA~~d~~~~~ 21 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDITGWT 21 (130)
T ss_pred CeEccCCCeEEEEEECCCCCE
Confidence 689999999999998887754
No 204
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=40.89 E-value=24 Score=40.35 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=21.4
Q ss_pred hcc-cCccEEeccccch--hhhhhhhhcC
Q psy10531 420 TKD-VNPAQIKGVGVDA--TCSLVALDTN 445 (564)
Q Consensus 420 ~~~-~~~~~~~ggg~~~--~~~~~a~~~~ 445 (564)
+.. ++.|.+|||+++. +.+++....|
T Consensus 325 ~~~~i~~ViLvGGssriP~v~~~l~~~fg 353 (616)
T PRK05183 325 EADEVKEVVMVGGSTRVPLVREAVGEFFG 353 (616)
T ss_pred CcccCCEEEEECCcccChHHHHHHHHHhc
Confidence 444 8999999999999 7778877766
No 205
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=40.65 E-value=50 Score=29.48 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=25.6
Q ss_pred EEEEEeCccceEEEEEeCCCCEEEEEEeec
Q psy10531 4 LLSVDVGTSSVRAALVSTRGKVSPIAVRPI 33 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~G~il~~~~~~~ 33 (564)
++|||+|-...-++++|.+|+++.....+.
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~~~~~~~~~~ 30 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGEKLRRFKFEN 30 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCcEEEEEEEec
Confidence 689999999999999999997777665543
No 206
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=40.55 E-value=87 Score=30.17 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=16.4
Q ss_pred EEEEEeCccceEEEEEeCC
Q psy10531 4 LLSVDVGTSSVRAALVSTR 22 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~ 22 (564)
+|.||+|-|++|.++++.+
T Consensus 1 ~L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEEE-SSEEEEEEEETT
T ss_pred CEEEEECCCeEEEEEEECC
Confidence 5789999999999999976
No 207
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=40.10 E-value=29 Score=39.44 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=21.0
Q ss_pred hcc-cCccEEeccccch--hhhhhhhhcC
Q psy10531 420 TKD-VNPAQIKGVGVDA--TCSLVALDTN 445 (564)
Q Consensus 420 ~~~-~~~~~~~ggg~~~--~~~~~a~~~~ 445 (564)
+.. ++.|.+|||+++. +.+++....|
T Consensus 309 ~~~~id~ViLvGGssriP~V~~~l~~~f~ 337 (599)
T TIGR01991 309 SVEEIKGVVLVGGSTRMPLVRRAVAELFG 337 (599)
T ss_pred ChhhCCEEEEECCcCCChHHHHHHHHHhC
Confidence 344 8999999999999 7777877666
No 208
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=39.95 E-value=26 Score=40.32 Aligned_cols=23 Identities=22% Similarity=0.089 Sum_probs=19.8
Q ss_pred cCccEEeccccch--hhhhhhhhcC
Q psy10531 423 VNPAQIKGVGVDA--TCSLVALDTN 445 (564)
Q Consensus 423 ~~~~~~~ggg~~~--~~~~~a~~~~ 445 (564)
++.|.+|||+++- +-+++....+
T Consensus 333 i~~ViLvGGssriP~v~~~i~~~f~ 357 (653)
T PTZ00009 333 VHEVVLVGGSTRIPKVQSLIKDFFN 357 (653)
T ss_pred CcEEEEECCCCCChhHHHHHHHHhC
Confidence 8999999999999 7777877765
No 209
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=38.64 E-value=24 Score=36.74 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=18.2
Q ss_pred ccEEeccccch--hhhhhhhhcC
Q psy10531 425 PAQIKGVGVDA--TCSLVALDTN 445 (564)
Q Consensus 425 ~~~~~ggg~~~--~~~~~a~~~~ 445 (564)
.|.++||+++- +.+++....+
T Consensus 282 ~IvL~GGss~ipgl~e~l~~~~~ 304 (333)
T TIGR00904 282 GIVLTGGGALLRNLDKLLSKETG 304 (333)
T ss_pred CEEEECcccchhhHHHHHHHHHC
Confidence 69999999988 8888887776
No 210
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=37.96 E-value=25 Score=41.41 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=20.2
Q ss_pred cEEEEEEeCccceEEEEEeCCCC
Q psy10531 2 EYLLSVDVGTSSVRAALVSTRGK 24 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d~~G~ 24 (564)
.|+||+||||+||==+|+|.+-+
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~d~~ 23 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVEDDYK 23 (805)
T ss_pred CceeEEeecccceeEEEEecccc
Confidence 48999999999999999997643
No 211
>KOG0103|consensus
Probab=37.21 E-value=68 Score=36.56 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=44.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCEEEEEcCCcccHHHHHHHhhhcCCeeecc
Q psy10531 496 SETSLVTLYLATIQALAYGTRHIMDAMHAAGKT-PAISTLLVSGGLAKNPLYVQTHADVTGCNVLCP 561 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~-~~~~~i~~~GG~a~s~~~~q~~Adv~g~~v~~~ 561 (564)
++.++-.+...+++-+---+...++. .+.. .++..|=+.||++|.|...+++++.||++..+.
T Consensus 301 ~ReEfEel~~plL~rv~~p~~~~l~d---~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~T 364 (727)
T KOG0103|consen 301 KREEFEELSAPLLERVEVPLLKALAD---AKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRT 364 (727)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHH---hcCccccceeEEEecCcccchHHHHHHHHHhCCccccc
Confidence 56665443556666665555444443 3322 127789999999999999999999999988654
No 212
>PRK13328 pantothenate kinase; Reviewed
Probab=36.03 E-value=39 Score=33.96 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=29.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcc
Q psy10531 494 DSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAK 542 (564)
Q Consensus 494 ~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~ 542 (564)
.+|..-+ ..+++-|.+..+..+++.+++.-.. .-.|+++||.++
T Consensus 183 ~~T~~ai---~sG~~~~~~~~i~~~i~~~~~~~~~--~~~vi~TGGda~ 226 (255)
T PRK13328 183 DDTPDAI---SAGCLAAQAGLIERAWRDLAARWQA--PVRLVLSGGAAD 226 (255)
T ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCC--CCEEEEECCCHH
Confidence 3456666 5677777777777777777654221 236899999864
No 213
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=35.89 E-value=1.3e+02 Score=32.50 Aligned_cols=46 Identities=11% Similarity=0.278 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHc-CCCCCCCEEEEEcCCc-ccHHHHHHHhhh
Q psy10531 506 ATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLA-KNPLYVQTHADV 553 (564)
Q Consensus 506 A~~Egva~~~~~~~~~l~~~-g~~~~~~~i~~~GG~a-~s~~~~q~~Adv 553 (564)
-++|..+|.++..+-.|-.. ... ++-|+++||.. .|+.+++.+.+-
T Consensus 300 lA~d~f~yri~k~Iga~~a~L~g~--vDaiVfTGGIgE~s~~lr~~I~~~ 347 (402)
T PRK00180 300 LALDVFVYRLAKYIGSYAAALNGR--LDAIVFTAGIGENSALVREKVLEG 347 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC--CCEEEEcCccccCCHHHHHHHHhh
Confidence 47889999999888777653 234 89999999988 888888777654
No 214
>PRK12397 propionate kinase; Reviewed
Probab=35.39 E-value=2.4e+02 Score=30.37 Aligned_cols=67 Identities=10% Similarity=0.102 Sum_probs=44.4
Q ss_pred ccccEecCCC-CCChhhHHHH-------HHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCc-ccHHHHHHHhh
Q psy10531 484 MKGMICGLTL-DSSETSLVTL-------YLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLA-KNPLYVQTHAD 552 (564)
Q Consensus 484 ~~g~~~Gl~~-~~~~~~~~~~-------~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a-~s~~~~q~~Ad 552 (564)
.++.++|++- +.+-.++..+ .+-++|..+|.++..+-.|-..-.. ++-|+++||.. .++..++.+.+
T Consensus 269 k~SGLlg~sG~s~D~R~l~~~~~~gd~~A~lA~d~f~yri~k~IGa~~a~lgg--vDaiVFTGGIGEns~~vR~~ic~ 344 (404)
T PRK12397 269 NESGLLGVSGVSSDYRDVEQAANTGNRQAKLALTLFAERIRATIGSYIMQMGG--LDALVFTGGIGENSARARSAVCH 344 (404)
T ss_pred ccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCEEEECCchhhCCHHHHHHHHh
Confidence 3567778776 5666666221 2347888899998888777654223 88999999987 45555554443
No 215
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=35.37 E-value=92 Score=35.73 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=45.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCEEEEEcCCcccHHHHHHHhhhcCC
Q psy10531 494 DSSETSLVTLYLATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLAKNPLYVQTHADVTGC 556 (564)
Q Consensus 494 ~~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~-g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~ 556 (564)
..+++.+ ..++..+++-.+..++..+.+. | +++|.++||...|..+++-+++.+..
T Consensus 663 ~~~~~~i---A~~fh~~la~~~~e~~~~~a~~~g----i~~V~lsGGVf~N~~l~~~~~~~l~~ 719 (750)
T COG0068 663 KDEPEKI---ATKFHNALAEGFAELAVELAKKYG----INKVVLSGGVFQNRLLLERLAKYLKK 719 (750)
T ss_pred cCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcC----ccEEEeeCCeeecHHHHHHHHHHHHh
Confidence 3577778 5578888888888777766553 4 67999999999999999999999874
No 216
>PRK13322 pantothenate kinase; Reviewed
Probab=34.78 E-value=36 Score=34.00 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=29.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCEEEEEcCCcc
Q psy10531 495 SSETSLVTLYLATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLAK 542 (564)
Q Consensus 495 ~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~-g~~~~~~~i~~~GG~a~ 542 (564)
+|..-+ ..+++.|.+..+..+++.+++. +.. -.++++||.++
T Consensus 176 ~T~~ai---~sG~~~~~~~~i~~~i~~~~~~~~~~---~~vilTGG~a~ 218 (246)
T PRK13322 176 NTVDAV---ERGCLLMLRGFIESQLEQARELWGPD---FEIFLTGGDAP 218 (246)
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCC---CEEEEECCCHH
Confidence 456666 6677778888888888777654 322 36999999864
No 217
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=34.55 E-value=26 Score=36.50 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=18.9
Q ss_pred cC-ccEEeccccch--hhhhhhhhcC
Q psy10531 423 VN-PAQIKGVGVDA--TCSLVALDTN 445 (564)
Q Consensus 423 ~~-~~~~~ggg~~~--~~~~~a~~~~ 445 (564)
++ .|.++||+++- +-+++.+..+
T Consensus 275 i~~~IvL~GG~s~ipgi~e~l~~~~~ 300 (336)
T PRK13928 275 IDRGIIMTGGGALLHGLDKLLAEETK 300 (336)
T ss_pred cCCCEEEECcccchhhHHHHHHHHHC
Confidence 55 79999999998 8888877665
No 218
>PRK07157 acetate kinase; Provisional
Probab=34.41 E-value=53 Score=35.25 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=23.6
Q ss_pred CcEEEEEEeCccceEEEEEeCC-CCEEEEEE
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTR-GKVSPIAV 30 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~-G~il~~~~ 30 (564)
|+.+|.|..|+||+|..|||.+ .+++.+..
T Consensus 2 M~~iLvlN~GSSSlKf~lf~~~~~~~l~~G~ 32 (400)
T PRK07157 2 KAKILVINAGSSSIKWQLFDKENLNLIASGL 32 (400)
T ss_pred CceEEEEECChHhheeEEEECCCCcEEEEEE
Confidence 4459999999999999999974 45665554
No 219
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=33.13 E-value=1.6e+02 Score=31.84 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-cCCCCCCCEEEEEcCCc-ccHHHHHHHhhhc
Q psy10531 506 ATIQALAYGTRHIMDAMHA-AGKTPAISTLLVSGGLA-KNPLYVQTHADVT 554 (564)
Q Consensus 506 A~~Egva~~~~~~~~~l~~-~g~~~~~~~i~~~GG~a-~s~~~~q~~Adv~ 554 (564)
-++|..+|.++..+-.|-. .+.. ++-|+++||.. .++..++.+.+-+
T Consensus 304 lA~~~f~yri~k~Iga~~a~L~G~--vDaiVFTGGIGEns~~vr~~i~~~l 352 (404)
T TIGR00016 304 LAIKMYVHRIAKYIGSYIASLEGN--LDAIVFTGGIGENAATVRELVLEAL 352 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEcCccccCCHHHHHHHHhhh
Confidence 4788999999988877755 3545 78999999998 7888777665543
No 220
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=32.93 E-value=1.5e+02 Score=29.84 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhc--CCeeeccC
Q psy10531 504 YLATIQALAYGTRHIMD-AMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVT--GCNVLCPQ 562 (564)
Q Consensus 504 ~~A~~Egva~~~~~~~~-~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~--g~~v~~~~ 562 (564)
.+++.+.++=.+...+. .++.. . ++.|.++||.+.|..+++.+.+.. +.++..|+
T Consensus 198 A~s~q~~~~~~l~~~~~~a~~~~--~--~~~lv~~GGVaaN~~lr~~l~~~~~~~~~~~~p~ 255 (268)
T PF00814_consen 198 AASFQEAIADHLAKKAPRALEKP--R--AKSLVVSGGVAANKYLREGLRKLCSEGIKLFFPP 255 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--T--CSEEEEESGGGGHHHHHHHHHHHHHHTSEEE---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--c--ccccchHHHHHHHHHHHHHHHHHHHcCCEEEcCC
Confidence 45666655544444443 23332 2 679999999999999999876543 55555543
No 221
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=32.74 E-value=66 Score=34.17 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=40.5
Q ss_pred cEEEEEEeCccc--eEEEEEeCCC---CEEEEEEeeccccC-------CCCCccccCHHH-------HHHHHHHHHHHHH
Q psy10531 2 EYLLSVDVGTSS--VRAALVSTRG---KVSPIAVRPIALWC-------PKPQLYEQSSED-------IWNSVCLAIRDVT 62 (564)
Q Consensus 2 ~~~LgIDiGTTs--vKa~l~d~~G---~il~~~~~~~~~~~-------~~~g~~eqd~~~-------~~~~i~~~l~~l~ 62 (564)
+++||+=.|||- +=+++++.++ +++...+.+|+... ..+. ..++++ +-+...+++++++
T Consensus 1 ~~~iGlMSGTSlDGiD~alv~~~~~~~~~l~~~~~pyp~~lr~~l~~~~~~~--~~~~~~~~~l~~~lg~~~a~av~~~l 78 (364)
T PF03702_consen 1 QLVIGLMSGTSLDGIDAALVEFDGWRIELLAFHSFPYPSELRERLLALSRPA--ASSLDELCELDRELGELFADAVNQFL 78 (364)
T ss_dssp -EEEEEEE-TT-SEEEEEEEEESSSSEEEEEEEEEE--HHHHHHHHHCCSTT--CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeccCCHHhhhheeEEEECCceEEeeeEeecCCHHHHHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999985 8889988775 45666777776210 1111 112222 2234556666666
Q ss_pred --hcCCCCCeEEEEE
Q psy10531 63 --KDVNPAQIKGVGV 75 (564)
Q Consensus 63 --~~~~~~~I~aIgi 75 (564)
.++++++|.+||.
T Consensus 79 ~~~~i~~~~I~~Igs 93 (364)
T PF03702_consen 79 KKNGISPSDIDLIGS 93 (364)
T ss_dssp HHCT--GGGEEEEEE
T ss_pred HHcCCCcccccEEEe
Confidence 3566788999998
No 222
>KOG2707|consensus
Probab=32.31 E-value=1.1e+02 Score=32.24 Aligned_cols=79 Identities=10% Similarity=0.128 Sum_probs=48.3
Q ss_pred EEEEEeCccceEEEEEeCCCCEEEEEEe-eccccCCCCCccccCHH-HHHHHHHHHHHHHH--hcCCCCCeEEEEEeCCC
Q psy10531 4 LLSVDVGTSSVRAALVSTRGKVSPIAVR-PIALWCPKPQLYEQSSE-DIWNSVCLAIRDVT--KDVNPAQIKGVGVDATC 79 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~G~il~~~~~-~~~~~~~~~g~~eqd~~-~~~~~i~~~l~~l~--~~~~~~~I~aIgis~q~ 79 (564)
+|||.-.-.-+-++++|+.++++++.-. .+..++...|-.---.+ .--+.+..++++++ ++..+.++.+|++|-..
T Consensus 34 VLgIETSCDDTavaVVd~~~~~~~~~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~gP 113 (405)
T KOG2707|consen 34 VLGIETSCDDTAVAVVDEFSHVLSSEIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQRALDAAGLSPKDLDAIAVTRGP 113 (405)
T ss_pred eeeEecccCcceeeeecccccccchhhhhhhHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHcCCCcccceeEEEecCC
Confidence 8899877777889999999998877421 11112222332211111 12345566666666 56778899999998665
Q ss_pred ceE
Q psy10531 80 SLV 82 (564)
Q Consensus 80 s~v 82 (564)
++.
T Consensus 114 Gl~ 116 (405)
T KOG2707|consen 114 GLP 116 (405)
T ss_pred Cce
Confidence 544
No 223
>PRK12440 acetate kinase; Reviewed
Probab=31.69 E-value=63 Score=34.64 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=0.0
Q ss_pred C--cEEEEEEeCccceEEEEEeC-CCCEEEEEEee
Q psy10531 1 M--EYLLSVDVGTSSVRAALVST-RGKVSPIAVRP 32 (564)
Q Consensus 1 M--~~~LgIDiGTTsvKa~l~d~-~G~il~~~~~~ 32 (564)
| +++|.|..|+||+|..|||. +.+++.+...+
T Consensus 1 ~~~~~ILviN~GSSSlKf~l~~~~~~~~l~~G~~e 35 (397)
T PRK12440 1 MSNSYVLVINSGSSSLKFAVIDSVTGEAVLSGLGE 35 (397)
T ss_pred CCCCEEEEEECChHhheEEEEecCCCceEEEEEEe
No 224
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=31.53 E-value=78 Score=33.68 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.4
Q ss_pred EEEEEEeCccceEEEEEeCC-CCEEEEE
Q psy10531 3 YLLSVDVGTSSVRAALVSTR-GKVSPIA 29 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~-G~il~~~ 29 (564)
.+|.|..|+||+|..+||.. ++++.+.
T Consensus 2 ~iLviN~GSSSlKf~l~~~~~~~~~~~G 29 (396)
T COG0282 2 KILVINAGSSSLKFQLFDMPELEVLASG 29 (396)
T ss_pred eEEEEecCcchheeeEeccCcccchhhh
Confidence 57999999999999999974 6666554
No 225
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=30.36 E-value=1.4e+02 Score=31.84 Aligned_cols=76 Identities=21% Similarity=0.192 Sum_probs=45.4
Q ss_pred CcEEEEEEeCccc--eEEEEEeCCCC-----EEEEEEeeccccCC------CCCccccCHHH-------HHHHHHHHHHH
Q psy10531 1 MEYLLSVDVGTSS--VRAALVSTRGK-----VSPIAVRPIALWCP------KPQLYEQSSED-------IWNSVCLAIRD 60 (564)
Q Consensus 1 M~~~LgIDiGTTs--vKa~l~d~~G~-----il~~~~~~~~~~~~------~~g~~eqd~~~-------~~~~i~~~l~~ 60 (564)
|.++||+=-|||- +-+++++.+|. ++...++||+.... -... .-++++ +-+.+.+++++
T Consensus 1 ~~~~iGlMSGTSlDGiD~alv~~~g~~~~~~~~~~~~~py~~~lr~~l~~~~~~~-~~~~~~l~~l~~~lg~~~a~av~~ 79 (365)
T PRK09585 1 SMRYIGLMSGTSLDGVDAALVEIDGEGTKVELLASATVPYPDELRAALLALLQGG-ADELERLAELDTALGRLFAEAVNA 79 (365)
T ss_pred CCeEEEeccccChhhhhEEEEEEeCCCcceEEeeeeEeeCCHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999989884 77788887652 55666677762110 0111 112222 23455666666
Q ss_pred HH--hcCCCCCeEEEEEeC
Q psy10531 61 VT--KDVNPAQIKGVGVDA 77 (564)
Q Consensus 61 l~--~~~~~~~I~aIgis~ 77 (564)
++ .++++.+|.+||..+
T Consensus 80 ~~~~~~l~~~~id~IgsHG 98 (365)
T PRK09585 80 LLAEAGLSPEDIDAIGSHG 98 (365)
T ss_pred HHHHcCCCccCccEEEeCC
Confidence 66 456778899999843
No 226
>KOG2707|consensus
Probab=30.30 E-value=1.4e+02 Score=31.42 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=36.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHH----HHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhcC
Q psy10531 496 SETSLVTLYLATIQALAYGTR----HIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTG 555 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~----~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~g 555 (564)
+..++ ...+.+.++..+- ..++.+...... ++.++++||.|+|......+.++.+
T Consensus 272 ~~~df---aa~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~--~~~lV~SGGVAsN~yir~~le~l~~ 330 (405)
T KOG2707|consen 272 EIADF---AASLQRTVFRHISSKTHRAIKSLLLQPKN--VKQLVISGGVASNQYIRGALEKLSA 330 (405)
T ss_pred hHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhcccC--CceEEEcCCccchHHHHHHHHHHHH
Confidence 56666 5566665554433 333433333344 6799999999999999988887643
No 227
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=30.03 E-value=80 Score=27.85 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=28.2
Q ss_pred ccCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEeCC
Q psy10531 44 EQSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVDAT 78 (564)
Q Consensus 44 eqd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~q 78 (564)
+-+++++++++.+.+.+++ .++++++|.+|-||..
T Consensus 12 ~n~~e~I~~at~eLl~~i~~~N~l~~~dIvSi~FT~T 48 (118)
T PF07736_consen 12 ENTPEEILEATRELLEEILERNELSPEDIVSIIFTVT 48 (118)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEE-
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeC
Confidence 4678999999999999998 6678899999999754
No 228
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.34 E-value=1.6e+02 Score=29.80 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=24.5
Q ss_pred EEEEEeCccceEEEEEeCCCCEEEEEEeecc
Q psy10531 4 LLSVDVGTSSVRAALVSTRGKVSPIAVRPIA 34 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~ 34 (564)
.|.||+|+..+-++++|++ +|.+.-.+-+.
T Consensus 229 alvVd~GngHttaalvded-RI~gv~EHHT~ 258 (342)
T COG4012 229 ALVVDYGNGHTTAALVDED-RIVGVYEHHTI 258 (342)
T ss_pred eEEEEccCCceEEEEecCC-eEEEEeecccc
Confidence 5889999999999999987 88876644433
No 229
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=29.22 E-value=72 Score=34.33 Aligned_cols=45 Identities=9% Similarity=0.012 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhc-ccCccEEeccccch---hhhhhhhhcCCcceeeC
Q psy10531 408 LYLATIQALADVTK-DVNPAQIKGVGVDA---TCSLVALDTNHQPLTIS 452 (564)
Q Consensus 408 ~~~~~i~~l~~~~~-~~~~~~~~ggg~~~---~~~~~a~~~~~~~~~~~ 452 (564)
+.+..|-.++-..+ +++-+..+||=..| +.+.+.+..+.+-+...
T Consensus 312 ri~k~Iga~~a~L~G~vDaiVFTGGIGEns~~vr~~i~~~l~~lGi~lD 360 (404)
T TIGR00016 312 RIAKYIGSYIASLEGNLDAIVFTGGIGENAATVRELVLEALEFLGFELD 360 (404)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCccccCCHHHHHHHHhhhhhcCceeC
Confidence 33555666666666 59999999998865 77777666654444444
No 230
>PRK07058 acetate kinase; Provisional
Probab=28.04 E-value=1.7e+02 Score=31.43 Aligned_cols=47 Identities=9% Similarity=0.166 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCc-ccHHHHHHHhhh
Q psy10531 505 LATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLA-KNPLYVQTHADV 553 (564)
Q Consensus 505 ~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a-~s~~~~q~~Adv 553 (564)
+-++|..+|.++..+-.|-..-.. ++-|+++||.. .|+..++.+-+-
T Consensus 295 ~lA~d~f~yri~k~IGa~~a~Lg~--vDaiVfTGGIgEns~~vr~~i~~~ 342 (396)
T PRK07058 295 REALDLFALRIAGEIARLAATLGG--LDAVVFTAGIGEHQPAIRAAVCER 342 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--CCEEEECCccccCcHHHHHHHHhh
Confidence 348899999999888777653224 89999999998 788777666554
No 231
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=26.68 E-value=1.4e+02 Score=33.03 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=27.0
Q ss_pred EEEEEeCccceEEEEEeCCCCEEEEEEeeccccC
Q psy10531 4 LLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWC 37 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~ 37 (564)
.+.+|+|+.|+-.++++ +++++...+.|....+
T Consensus 134 ~lviDIGGGStEl~~~~-~~~~~~~~Sl~lG~vr 166 (496)
T PRK11031 134 RLVVDIGGASTELVTGT-GAQATSLFSLSMGCVT 166 (496)
T ss_pred EEEEEecCCeeeEEEec-CCceeeeeEEeccchH
Confidence 57899999999999987 6788888888876443
No 232
>PRK03011 butyrate kinase; Provisional
Probab=25.88 E-value=1.8e+02 Score=30.77 Aligned_cols=70 Identities=11% Similarity=0.112 Sum_probs=40.4
Q ss_pred CcEEEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCC--CCccccCHHHH-HHHHHHHHHHHHhcCCCCCeEEEEE
Q psy10531 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPK--PQLYEQSSEDI-WNSVCLAIRDVTKDVNPAQIKGVGV 75 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~--~g~~eqd~~~~-~~~i~~~l~~l~~~~~~~~I~aIgi 75 (564)
|..+|.|.-|+||+|.++|+ +.+.+.+....++..--. +...+| .++ .+.+.+.+++ .+++.++|.+|+-
T Consensus 1 ~~~il~inpgststk~a~~~-~~~~~~~~~~~h~~~~~~~~~~~~~q--~~~r~~~i~~~l~~--~g~~~~~l~av~~ 73 (358)
T PRK03011 1 MMRILVINPGSTSTKIAVFE-DEKPIFEETLRHSAEELEKFKTIIDQ--YEFRKQAILDFLKE--HGIDLSELDAVVG 73 (358)
T ss_pred CCEEEEEcCCCchheEEEEc-CCceeeeeccccCHHHHhcCCCccch--HHHHHHHHHHHHHH--cCCChhcceEEEE
Confidence 45689999999999999998 455565665544422111 222233 222 2333344433 3455577888843
No 233
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=25.74 E-value=43 Score=35.00 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=22.9
Q ss_pred ccEEeccccch--hhhhhhhhcCCcceeeCC
Q psy10531 425 PAQIKGVGVDA--TCSLVALDTNHQPLTISP 453 (564)
Q Consensus 425 ~~~~~ggg~~~--~~~~~a~~~~~~~~~~~~ 453 (564)
-++++|||+.- |-+++++.+| +||.+.+
T Consensus 276 GI~LtGGga~l~Gl~~~i~~~~~-~pV~va~ 305 (326)
T PF06723_consen 276 GIVLTGGGALLRGLDEYISEETG-VPVRVAD 305 (326)
T ss_dssp -EEEESGGGGSBTHHHHHHHHHS-S-EEE-S
T ss_pred CEEEEChhhhhccHHHHHHHHHC-CCEEEcC
Confidence 49999999999 9999999998 8888763
No 234
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=25.73 E-value=1.5e+02 Score=25.69 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=19.8
Q ss_pred CccceEEEEEeCCCCEEEEEEeec
Q psy10531 10 GTSSVRAALVSTRGKVSPIAVRPI 33 (564)
Q Consensus 10 GTTsvKa~l~d~~G~il~~~~~~~ 33 (564)
.-|++||-|||.+|+++..+..-+
T Consensus 15 ~Pt~~RARlyd~dG~Ll~DSr~l~ 38 (112)
T PF13756_consen 15 SPTRTRARLYDPDGNLLADSRVLY 38 (112)
T ss_pred CCCCceEEEECCCCCEEeeccccc
Confidence 346999999999999998776555
No 235
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=25.15 E-value=92 Score=32.42 Aligned_cols=68 Identities=10% Similarity=0.171 Sum_probs=43.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCE-EEEEcCCcccHHHHHHHhhhcCCeeeccCC
Q psy10531 496 SETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAIST-LLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563 (564)
Q Consensus 496 ~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~-i~~~GG~a~s~~~~q~~Adv~g~~v~~~~~ 563 (564)
+..++...++-.++++.-++|..||...-.-....+++ ++++||+|.-+-+-+.+++-++.||.+.++
T Consensus 248 ~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~ 316 (342)
T COG1077 248 NSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADD 316 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCC
Confidence 45555332444455555555655554211000001355 999999998888899999999999998764
No 236
>PRK07058 acetate kinase; Provisional
Probab=24.53 E-value=96 Score=33.29 Aligned_cols=45 Identities=9% Similarity=-0.028 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhcccCccEEeccccch---hhhhhhhhcCCcceeeC
Q psy10531 408 LYLATIQALADVTKDVNPAQIKGVGVDA---TCSLVALDTNHQPLTIS 452 (564)
Q Consensus 408 ~~~~~i~~l~~~~~~~~~~~~~ggg~~~---~~~~~a~~~~~~~~~~~ 452 (564)
+.+..|-.++-..|+++-+..+||=..| +++.+.+..+.+-+.+.
T Consensus 304 ri~k~IGa~~a~Lg~vDaiVfTGGIgEns~~vr~~i~~~l~~lgi~lD 351 (396)
T PRK07058 304 RIAGEIARLAATLGGLDAVVFTAGIGEHQPAIRAAVCERLAWLGVELD 351 (396)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCccccCcHHHHHHHHhhhhhhceeeC
Confidence 4456666777777889999999998856 77777666654444444
No 237
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=23.90 E-value=57 Score=34.06 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=19.2
Q ss_pred cC-ccEEeccccch--hhhhhhhhcC
Q psy10531 423 VN-PAQIKGVGVDA--TCSLVALDTN 445 (564)
Q Consensus 423 ~~-~~~~~ggg~~~--~~~~~a~~~~ 445 (564)
++ .|.++|||++- +.+++.+..+
T Consensus 278 ~~~gIvLtGG~s~lpgl~e~l~~~~~ 303 (335)
T PRK13929 278 VDRGVILTGGGALLNGIKEWLSEEIV 303 (335)
T ss_pred cCCCEEEEchhhhhhhHHHHHHHHHC
Confidence 66 59999999988 8888887776
No 238
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=23.88 E-value=95 Score=33.46 Aligned_cols=45 Identities=7% Similarity=-0.068 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhh-cccCccEEeccccch---hhhhhhhhcCCcceeeC
Q psy10531 408 LYLATIQALADVT-KDVNPAQIKGVGVDA---TCSLVALDTNHQPLTIS 452 (564)
Q Consensus 408 ~~~~~i~~l~~~~-~~~~~~~~~ggg~~~---~~~~~a~~~~~~~~~~~ 452 (564)
+.+..|-.++-.. |+++-|..+||=+.| +.+.+.+....+-+...
T Consensus 308 ri~k~Iga~~a~L~g~vDaiVfTGGIgE~s~~lr~~I~~~l~~lGi~lD 356 (402)
T PRK00180 308 RLAKYIGSYAAALNGRLDAIVFTAGIGENSALVREKVLEGLEFLGIELD 356 (402)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEcCccccCCHHHHHHHHhhhhhcCeeeC
Confidence 3455666666666 789999999996634 77777666654444443
No 239
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=23.31 E-value=1.1e+02 Score=30.68 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=26.7
Q ss_pred CCEEEEEcCC--cccHHHHHHHhhhcCCeeecc
Q psy10531 531 ISTLLVSGGL--AKNPLYVQTHADVTGCNVLCP 561 (564)
Q Consensus 531 ~~~i~~~GG~--a~s~~~~q~~Adv~g~~v~~~ 561 (564)
.+-|+++||. +..++-+|.+|..+|+|+..-
T Consensus 61 ~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~~ 93 (255)
T COG1058 61 ADVVITTGGLGPTHDDLTAEAVAKALGRPLVLD 93 (255)
T ss_pred CCEEEECCCcCCCccHhHHHHHHHHhCCCcccC
Confidence 4679999984 689999999999999998753
No 240
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=23.01 E-value=2.7e+02 Score=27.76 Aligned_cols=46 Identities=17% Similarity=0.158 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHH
Q psy10531 504 YLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTH 550 (564)
Q Consensus 504 ~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~ 550 (564)
.+.+++..+..+...+..+.+..... -..|++.||.++|..+.+-+
T Consensus 195 a~~Il~~a~~~la~~i~~~~~~~~~~-~~~v~l~GGv~~~~~~~~~l 240 (271)
T PF01869_consen 195 ARDILAEAADELAELIKAVLKRLGPE-KEPVVLSGGVFKNSPLVKAL 240 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTCC-CCSEEEESGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-CCeEEEECCccCchHHHHHH
Confidence 44678888888877777665432220 22399999999997776655
No 241
>PF13660 DUF4147: Domain of unknown function (DUF4147); PDB: 1X3L_A 2B8N_A.
Probab=22.86 E-value=1.6e+02 Score=29.40 Aligned_cols=87 Identities=20% Similarity=0.227 Sum_probs=45.6
Q ss_pred cCccEEeccccch--hhhhhhhhcCCcceeeCCCCCCcccccCcceEEeecccCCCCCCCCCCccccEecCCCCCChhhH
Q psy10531 423 VNPAQIKGVGVDA--TCSLVALDTNHQPLTISPTDTRHSTELTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSL 500 (564)
Q Consensus 423 ~~~~~~~ggg~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~~~P~~~G~r~P~~~~~~~g~~~Gl~~~~~~~~~ 500 (564)
.+++||+|.|=+. ..+-+.+..| . .-..|++..|+-... |.. .--++.|-.+-.+...+
T Consensus 40 ~~~i~vvg~GKAa~~MA~a~~~~lg-----------~---~i~~G~vv~~~g~~~--~~~---~i~v~~~~HP~Pd~~s~ 100 (238)
T PF13660_consen 40 YGRIYVVGFGKAAAPMAEAAEEILG-----------D---RIVGGLVVVPYGHES--PLP---RIEVLEGGHPLPDENSV 100 (238)
T ss_dssp -SSEEEEEESTTHHHHHHHHHHHCG-----------G---CEEEEEEEEETT-------T---TSEEEEE-SSS--HHHH
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHhc-----------c---cccCceEEeCCcccC--CCC---CEEEEECCCCCCCHHHH
Confidence 7899999999888 5555665555 1 124799999985433 221 11234443344455444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCc
Q psy10531 501 VTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLA 541 (564)
Q Consensus 501 ~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a 541 (564)
-+.+.+++.+++.+-. +.=-+.++||+|
T Consensus 101 ------------~aa~~il~~~~~~~~~-dlvl~LiSGGgS 128 (238)
T PF13660_consen 101 ------------RAARRILELARELTED-DLVLVLISGGGS 128 (238)
T ss_dssp ------------HHHHHHHHHHCC--TT-SEEEEEE-TTHH
T ss_pred ------------HHHHHHHHHHhcCCCC-CeEEEEecCChH
Confidence 3346677776654322 133467888875
No 242
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=22.56 E-value=4.5e+02 Score=24.17 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=19.6
Q ss_pred CcEEEEEEeCccc-----eEEEEEeCCCCEE
Q psy10531 1 MEYLLSVDVGTSS-----VRAALVSTRGKVS 26 (564)
Q Consensus 1 M~~~LgIDiGTTs-----vKa~l~d~~G~il 26 (564)
|+.+|.||+.||+ +-=++++ +++++
T Consensus 1 ~~~~LslD~STs~~~~~gTG~A~~~-~~~~~ 30 (159)
T PF07066_consen 1 MKKVLSLDFSTSSKKGEGTGWAFFK-GSDLV 30 (159)
T ss_pred CCeeEEEEEecccCCCCCceeEEec-CCeEE
Confidence 7789999999998 7778887 44443
No 243
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=22.38 E-value=1.2e+02 Score=26.77 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=29.9
Q ss_pred ccCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEeCC
Q psy10531 44 EQSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVDAT 78 (564)
Q Consensus 44 eqd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~q 78 (564)
+-+.+++++++.+.+.+++ .++++++|.+|-||..
T Consensus 12 ~nt~e~I~~at~eLl~~i~~~N~l~~edivSv~FT~T 48 (117)
T cd02185 12 ENTAEEILEATRELLEEIIERNNIKPEDIISVIFTVT 48 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeC
Confidence 4578899999999999998 5678889999999765
No 244
>KOG1386|consensus
Probab=22.18 E-value=1.9e+02 Score=31.78 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=46.1
Q ss_pred cEEEEEEeCccceEEEEEe---CCCC-EEEEEEeeccccCCCCCc--cccCHHHHHHHHHHHHHHHHhcC
Q psy10531 2 EYLLSVDVGTSSVRAALVS---TRGK-VSPIAVRPIALWCPKPQL--YEQSSEDIWNSVCLAIRDVTKDV 65 (564)
Q Consensus 2 ~~~LgIDiGTTsvKa~l~d---~~G~-il~~~~~~~~~~~~~~g~--~eqd~~~~~~~i~~~l~~l~~~~ 65 (564)
+|-+.||.|+|..|.-||. ++|+ ++......+.-....||- ...+|+..-..+..+++-+...+
T Consensus 9 kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a~~~l~pLlefA~~~I 78 (501)
T KOG1386|consen 9 KYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFADNPEGASVYLTPLLEFAKEHI 78 (501)
T ss_pred eEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhccChhhhHHHHHHHHHHHHhhC
Confidence 4789999999999999987 3566 455555545444456663 45799988888888887665333
No 245
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=22.14 E-value=63 Score=33.50 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=17.2
Q ss_pred ccEEeccccch--hhhhhhhhcC
Q psy10531 425 PAQIKGVGVDA--TCSLVALDTN 445 (564)
Q Consensus 425 ~~~~~ggg~~~--~~~~~a~~~~ 445 (564)
.|.++||+++- +.+++.+..+
T Consensus 279 ~IvL~GG~s~ipgl~~~l~~~~~ 301 (334)
T PRK13927 279 GIVLTGGGALLRGLDKLLSEETG 301 (334)
T ss_pred CEEEECchhhhhHHHHHHHHHHC
Confidence 59999999998 8888876554
No 246
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=21.93 E-value=63 Score=33.45 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=18.1
Q ss_pred cCc-cEEeccccch--hhhhhhhhcC
Q psy10531 423 VNP-AQIKGVGVDA--TCSLVALDTN 445 (564)
Q Consensus 423 ~~~-~~~~ggg~~~--~~~~~a~~~~ 445 (564)
+++ |+++||+++- +.++++...+
T Consensus 280 ~~~~IvL~GG~s~ipg~~~~l~~~~~ 305 (335)
T PRK13930 280 IDRGIVLTGGGALLRGLDKLLSEETG 305 (335)
T ss_pred HhCCEEEECchhcchhHHHHHHHHHC
Confidence 454 9999999988 8888876655
No 247
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=21.87 E-value=1.2e+02 Score=26.69 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=29.8
Q ss_pred ccCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEEeCC
Q psy10531 44 EQSSEDIWNSVCLAIRDVT--KDVNPAQIKGVGVDAT 78 (564)
Q Consensus 44 eqd~~~~~~~i~~~l~~l~--~~~~~~~I~aIgis~q 78 (564)
+-+.+++++++.+.+.+++ .++++++|.+|-||..
T Consensus 12 ~nt~e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T 48 (117)
T TIGR01796 12 RNEAEEIGEAVAELLTELMERNELTPEDLISVIFTVT 48 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEec
Confidence 4577899999999999998 5678889999999765
No 248
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=21.74 E-value=3e+02 Score=28.15 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=26.2
Q ss_pred EEEEeCccceEEEEEeCCCCEEEEEEeeccccC
Q psy10531 5 LSVDVGTSSVRAALVSTRGKVSPIAVRPIALWC 37 (564)
Q Consensus 5 LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~ 37 (564)
+.+|+|+.|+..++++ +++++...+.|+...+
T Consensus 128 ~v~DiGGGSte~~~~~-~~~~~~~~Sl~lG~vr 159 (300)
T TIGR03706 128 LVVDIGGGSTELILGK-DFEPGEGVSLPLGCVR 159 (300)
T ss_pred EEEEecCCeEEEEEec-CCCEeEEEEEccceEE
Confidence 7899999999999987 5788888888876443
No 249
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=21.46 E-value=1.1e+02 Score=30.93 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=35.7
Q ss_pred EEEEEeCccceEEEEEeCCCCEEEEEEeeccccCCCCCccc--cCHHHHHHHHHHHHHHHH
Q psy10531 4 LLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYE--QSSEDIWNSVCLAIRDVT 62 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~G~il~~~~~~~~~~~~~~g~~e--qd~~~~~~~i~~~l~~l~ 62 (564)
.+.+|+|+.|+-.++++ ++++....+.|+...+-...+.. ....+..+.+.+.+++.+
T Consensus 114 ~lviDIGGGStEl~~~~-~~~~~~~~Sl~lG~vrl~e~~~~~~~~~~~~~~~~~~~i~~~l 173 (285)
T PF02541_consen 114 GLVIDIGGGSTELILFE-NGKVVFSQSLPLGAVRLTERFFKSDPPTAEELEKLREFIRKEL 173 (285)
T ss_dssp EEEEEEESSEEEEEEEE-TTEEEEEEEES--HHHHHHHHSGCSS-HHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCceEEEEEE-CCeeeEeeeeehHHHHHHHHHhccCcchHHHHHHHHHHHHHHH
Confidence 57899999999999987 48888888888764432221111 122344555555555554
No 250
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=21.42 E-value=1.8e+02 Score=26.66 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=22.2
Q ss_pred EEEEEEeCccceEEEEEeCCCCEEEEE
Q psy10531 3 YLLSVDVGTSSVRAALVSTRGKVSPIA 29 (564)
Q Consensus 3 ~~LgIDiGTTsvKa~l~d~~G~il~~~ 29 (564)
.+++||+|+-|.--++++.++..+...
T Consensus 2 ii~sIDiGikNlA~~iie~~~~~i~~~ 28 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEFEGNKIRVI 28 (143)
T ss_pred eEEEEecCCCceeEEEEEcCCCeEEEE
Confidence 489999999999999999877655443
No 251
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=21.27 E-value=1.2e+02 Score=30.87 Aligned_cols=46 Identities=20% Similarity=0.133 Sum_probs=33.2
Q ss_pred EEEEeCccceEEEEEeC-CCCEEEEEEeeccccCCCCCccccCHHHHHHHHHHH
Q psy10531 5 LSVDVGTSSVRAALVST-RGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLA 57 (564)
Q Consensus 5 LgIDiGTTsvKa~l~d~-~G~il~~~~~~~~~~~~~~g~~eqd~~~~~~~i~~~ 57 (564)
+|||-||.|+-+.-||. .|+++-...++.. .++.+|.-+.+-+.+.
T Consensus 1 ~GIDpGT~smdvfgfdDEsg~vi~~~~I~rd-------eVtk~p~iiv~ii~e~ 47 (374)
T COG2441 1 IGIDPGTGSMDVFGFDDESGNVIVDVAIPRD-------EVTKSPRIIVDIIEEV 47 (374)
T ss_pred CCcCCCCCceeEEEEecCCCCEEEEEecCHH-------HhccCchHHHHHHHHH
Confidence 58999999998877775 7999988776654 3567776665444433
No 252
>PRK12379 propionate/acetate kinase; Provisional
Probab=21.21 E-value=1.3e+02 Score=32.41 Aligned_cols=38 Identities=13% Similarity=-0.033 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhcccCccEEeccccch---hhhhhhhhcC
Q psy10531 408 LYLATIQALADVTKDVNPAQIKGVGVDA---TCSLVALDTN 445 (564)
Q Consensus 408 ~~~~~i~~l~~~~~~~~~~~~~ggg~~~---~~~~~a~~~~ 445 (564)
+.+..|-.++-..++++-|..+||=..| +.+.+.+...
T Consensus 303 ri~k~IGa~~a~L~~vDaIVFTGGIGen~~~vR~~i~~~L~ 343 (396)
T PRK12379 303 RIARHIAGHAASLHRLDGIIFTGGIGENSSLIRRLVMEHLA 343 (396)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 3355566666667789999999999888 6666655444
No 253
>PRK13329 pantothenate kinase; Reviewed
Probab=20.96 E-value=77 Score=31.73 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=0.0
Q ss_pred CcEEEEEEeCccceEEEEEeC---CCCEE
Q psy10531 1 MEYLLSVDVGTSSVRAALVST---RGKVS 26 (564)
Q Consensus 1 M~~~LgIDiGTTsvKa~l~d~---~G~il 26 (564)
|+ .|-||+|-|.+|.+++|. .++++
T Consensus 1 ~m-~LliD~GNTriKw~~~~~~~~~~~~~ 28 (249)
T PRK13329 1 MT-FLAIDVGNTRLKWGLYDAAQPGAALL 28 (249)
T ss_pred CC-EEEEEcCcchheeeEecccccCCccc
No 254
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=20.73 E-value=6e+02 Score=24.72 Aligned_cols=68 Identities=21% Similarity=0.161 Sum_probs=39.9
Q ss_pred EEEEEEeCc-----cceEEEEEeC--CCCEEEEEEeeccccCCC-CCccccCHHHHHHHHHHH--HHHHHhcCCCCCeEE
Q psy10531 3 YLLSVDVGT-----SSVRAALVST--RGKVSPIAVRPIALWCPK-PQLYEQSSEDIWNSVCLA--IRDVTKDVNPAQIKG 72 (564)
Q Consensus 3 ~~LgIDiGT-----TsvKa~l~d~--~G~il~~~~~~~~~~~~~-~g~~eqd~~~~~~~i~~~--l~~l~~~~~~~~I~a 72 (564)
++.|+|+.- ..+-++++-. +++.+......+++..|- || +-++.++ +.+++..+.
T Consensus 27 ~I~gvDiS~~~~~~~~vaa~Vv~~~~~~~~~~~~~~~~~~~~PYIPG---------~LafRE~p~l~~~~~~l~------ 91 (208)
T cd06559 27 LVAGVDVSYKKDGDLAVAAAVVLDYPDLEVVETAVAVGEVTFPYIPG---------LLAFREGPPLLEALEKLK------ 91 (208)
T ss_pred EEEEEEeeeccCCCeEEEEEEEEECCCCcEEEEEEEEEecCCCCcch---------hHHHhhHHHHHHHHHhCC------
Confidence 688999953 3333333333 799998888777765542 33 3344444 555553332
Q ss_pred EEEeCCCceEEEcCCCC
Q psy10531 73 VGVDATCSLVALDTNHQ 89 (564)
Q Consensus 73 Igis~q~s~v~~D~~G~ 89 (564)
....++++|-+|.
T Consensus 92 ----~~PDlilVDG~G~ 104 (208)
T cd06559 92 ----TKPDLLLVDGHGI 104 (208)
T ss_pred ----CCCCEEEEeCCcc
Confidence 1266777777663
No 255
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=20.67 E-value=1.4e+02 Score=32.12 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=43.2
Q ss_pred EEEEEeCccceEEEEEeCC-CCEEEEEEeeccccCCC--------CC------ccccCHHHHHHHHHHHHHHHHhcCCCC
Q psy10531 4 LLSVDVGTSSVRAALVSTR-GKVSPIAVRPIALWCPK--------PQ------LYEQSSEDIWNSVCLAIRDVTKDVNPA 68 (564)
Q Consensus 4 ~LgIDiGTTsvKa~l~d~~-G~il~~~~~~~~~~~~~--------~g------~~eqd~~~~~~~i~~~l~~l~~~~~~~ 68 (564)
+|.|..|+||+|.+||+.+ .+++.+....-- ..+. ++ ....+.+.-.+.+.+.+++.....+..
T Consensus 2 ILVIN~GSSS~Kfalf~~~~~~~l~~g~~e~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~il~~L~~~~~~~~~~ 80 (388)
T PF00871_consen 2 ILVINPGSSSTKFALFDMDSGEVLASGLVERI-GSPDSEILHKVSGGQKEQEPTIIDQHEYALEAILDFLKEHGIGFDLE 80 (388)
T ss_dssp EEEEEEESSEEEEEEEETTTTEEEEEEEEEST-TSTTHEEEEEECTTEEEEEESTSCSHHHHHHHHHHHHHHTTSTTCGG
T ss_pred EEEEcCChHhheeeeEECCCCCeeeechheec-cCCcceeeeecCCCcccccccCCCCHHHHHHHHHHHHHhcCCccccC
Confidence 7899999999999999985 567765544421 1111 11 111244444555555555521223457
Q ss_pred CeEEEEEe
Q psy10531 69 QIKGVGVD 76 (564)
Q Consensus 69 ~I~aIgis 76 (564)
+|.+||--
T Consensus 81 ~i~AVghR 88 (388)
T PF00871_consen 81 EIDAVGHR 88 (388)
T ss_dssp GEEEEEEE
T ss_pred ceeEEEEe
Confidence 89999874
No 256
>KOG2708|consensus
Probab=20.11 E-value=3.8e+02 Score=26.64 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=40.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEcCCcccHHHHHHHhhhc
Q psy10531 495 SSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVT 554 (564)
Q Consensus 495 ~~~~~~~~~~~A~~Egva~~~~~~~~~l~~~g~~~~~~~i~~~GG~a~s~~~~q~~Adv~ 554 (564)
-+++|+ ..++.|-+.-.+..+-|..-+. .. -+++.+.||.--|..+.+|+|-+.
T Consensus 225 ~t~~DL---CySLQEtvFamLVEiTERAMAh-~~--s~evLIVGGVGCN~RLQeMM~~Mc 278 (336)
T KOG2708|consen 225 VTKEDL---CYSLQETVFAMLVEITERAMAH-CG--SKEVLIVGGVGCNERLQEMMAIMC 278 (336)
T ss_pred ccHHHH---HHHHHHHHHHHHHHHHHHHHhh-cC--CCcEEEEecccccHHHHHHHHHHH
Confidence 489999 8899998766666666543332 22 468999999988999999988764
Done!