RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10531
(564 letters)
>gnl|CDD|212663 cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis
carbohydrate kinase-like subgroup; belongs to the FGGY
family of carbohydrate kinases. This subgroup is
composed of the uncharacterized Yersinia
Pseudotuberculosis carbohydrate kinase that has been
named glyerol/xylulose kinase and similar
uncharacterized proteins from bacteria and eukaryota.
Carbohydrate kinases catalyze the ATP-dependent
phosphorylation of their carbohydrate substrate to
produce phosphorylated sugar and ADP. The presence of
Mg2+ is required for catalytic activity. This subgroup
shows high homology to characterized ribulokinases and
belongs to the FGGY family of carbohydrate kinases, the
monomers of which contain two large domains, which are
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain.
Length = 536
Score = 639 bits (1651), Expect = 0.0
Identities = 235/430 (54%), Positives = 301/430 (70%), Gaps = 11/430 (2%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y + VDVGT S RA L +G++ AVRPI +W P+P EQSS+DIW +VC A++
Sbjct: 2 YYIGVDVGTGSARAGLFDAKGRLLARAVRPIQIWHPQPDFVEQSSDDIWQAVCQAVKAAI 61
Query: 63 K--DVNPAQIKGVGVDATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINA 120
V+P Q+KG+G DATCSLV LD QPL++SP+GD+ +N+++WMDHRA+SEA++INA
Sbjct: 62 AGAGVDPEQVKGIGFDATCSLVVLDKEGQPLSVSPSGDNEQNIIVWMDHRAISEAERINA 121
Query: 121 TKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQSLC 180
T H VL VGG ISPEMETPKLLWLK+NLP+T W RAG FFDLPDFLTW+ TG ET+SLC
Sbjct: 122 TGHPVLKYVGGVISPEMETPKLLWLKENLPET-WSRAGKFFDLPDFLTWRATGSETRSLC 180
Query: 181 SLVCKWTYDAYD-RRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVARAL 239
+LVCKWTY A++ + W++D+ E IGL DL + + IG V PG+P+G+G++ E A L
Sbjct: 181 TLVCKWTYLAHEKKGWDDDFLEAIGLEDLVEENFAKIGEDVLPPGEPLGNGLTAEAAAEL 240
Query: 240 GLNPGTPVSVSMIDAHAGALALLATSAPG-IPEDIDSKLGLICGTSTCHMALSAKKVQVP 298
GL PGTPV +IDAHAG + +L G +D+ S+L LICGTSTCHMALS V VP
Sbjct: 241 GLPPGTPVGAGLIDAHAGGIGVLGADLSGCEADDLTSRLALICGTSTCHMALSPDPVFVP 300
Query: 299 GVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHV 358
GVWGPY+ ++P L E GQSATG LLDHII +HPA + K+ E + YLN
Sbjct: 301 GVWGPYFSAMVPGLWLNEGGQSATGALLDHIIQSHPAFPEL-KEQAGESGISIYAYLNAR 359
Query: 359 IDT-----QHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATI 413
++ LT D HV PDFHGNRSPLAD +++G+I GLTLD+S L LYLAT+
Sbjct: 360 LEELAAEKGSVAYLTRDLHVLPDFHGNRSPLADPNLRGVISGLTLDTSLDDLARLYLATL 419
Query: 414 QALADVTKDV 423
QA+A T+ +
Sbjct: 420 QAIAYGTRHI 429
Score = 182 bits (464), Expect = 9e-51
Identities = 65/102 (63%), Positives = 79/102 (77%), Gaps = 2/102 (1%)
Query: 462 LTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDA 521
LT D HV PDFHGNRSPLAD +++G+I GLTLD+S L LYLAT+QA+AYGTRHI++A
Sbjct: 373 LTRDLHVLPDFHGNRSPLADPNLRGVISGLTLDTSLDDLARLYLATLQAIAYGTRHIIEA 432
Query: 522 MHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563
M+AAG I TL GGL+KNPL+VQ HAD TG V+ P+E
Sbjct: 433 MNAAGHK--IDTLFACGGLSKNPLFVQLHADATGLPVVLPKE 472
Score = 61.1 bits (149), Expect = 9e-10
Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 411 ATIQALADVTKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPT 454
A A+A V+P Q+KG+G DATCSLV LD QPL++SP+
Sbjct: 56 AVKAAIAGA--GVDPEQVKGIGFDATCSLVVLDKEGQPLSVSPS 97
>gnl|CDD|233356 TIGR01315, 5C_CHO_kinase, FGGY-family pentulose kinase. This model
represents a subfamily of the FGGY family of
carbohydrate kinases. This subfamily is closely related
to a set of ribulose kinases, and many members are
designated ribitol kinase. However, the member from
Klebsiella pneumoniae, from a ribitol catabolism operon,
accepts D-ribulose and to a lesser extent D-arabinitol
and ribitol (PMID:9639934 and JW Lengeler, personal
communication); its annotation in GenBank as ribitol
kinase is imprecise and may have affected public
annotation of related proteins.
Length = 541
Score = 470 bits (1211), Expect = e-161
Identities = 183/440 (41%), Positives = 264/440 (60%), Gaps = 18/440 (4%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV- 61
+ + VDVGT S RA ++ + G + +A + I W P L QSS IW ++C ++ V
Sbjct: 1 HYIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVL 60
Query: 62 -TKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINA 120
V+P +KG+G DATCSLV L + +PL +S G +N++LWMDHRA++EA++INA
Sbjct: 61 AESKVDPNSVKGIGFDATCSLVVLTHDGEPLPVSKNGGADQNIILWMDHRALAEAEKINA 120
Query: 121 TKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQSLC 180
T H++L VGGK+S EME PK+LWLK N+P FFDL DFLTW+ TG E +S C
Sbjct: 121 TNHNLLRYVGGKMSVEMEIPKVLWLKNNMPPE-LFARCKFFDLTDFLTWRATGKEIRSFC 179
Query: 181 SLVCKWTYDAY---DRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVAR 237
S+VCKW + ++ W ED++E IGLG+L + + +G + +PG+ +G G++ E A+
Sbjct: 180 SVVCKWGFVPVDGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSPGELVGGGLTAEAAQ 239
Query: 238 ALGLNPGTPVSVSMIDAHAGALALL-ATSAPGIP-EDIDSKLGLICGTSTCHMALSAKKV 295
LGL GT V +IDAHAG + + A A ++L + GTSTCHMA++ V
Sbjct: 240 ELGLPAGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQAFTRLAAVAGTSTCHMAMTKGPV 299
Query: 296 QVPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYL 355
VPGVWGPY + ++P L E GQSA G+L+DH++ H A +K+ + YL
Sbjct: 300 FVPGVWGPYRDALIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAE-AAGKNIYDYL 358
Query: 356 NHVI--------DTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVT 407
N + S L FHV+PD GNRSP+AD +M+G+I GL++D S+ L
Sbjct: 359 NEHLKEMAAKTNAPSISY-LVRHFHVYPDLWGNRSPIADPNMRGVIIGLSMDRSKDGLAL 417
Query: 408 LYLATIQALADVTKDVNPAQ 427
LY AT++ +A T+ + A
Sbjct: 418 LYYATMEFIAYGTRQIVEAM 437
Score = 128 bits (324), Expect = 9e-32
Identities = 49/102 (48%), Positives = 68/102 (66%), Gaps = 2/102 (1%)
Query: 462 LTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDA 521
L FHV+PD GNRSP+AD +M+G+I GL++D S+ L LY AT++ +AYGTR I++A
Sbjct: 377 LVRHFHVYPDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEA 436
Query: 522 MHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563
M+ AG T I ++ +SGG +NPL +Q AD VL P
Sbjct: 437 MNTAGHT--IKSIFMSGGQCQNPLLMQLIADACDMPVLIPYV 476
Score = 48.0 bits (114), Expect = 1e-05
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 422 DVNPAQIKGVGVDATCSLVALDTNHQPLTISPTD 455
V+P +KG+G DATCSLV L + +PL +S
Sbjct: 64 KVDPNSVKGIGFDATCSLVVLTHDGEPLPVSKNG 97
>gnl|CDD|223995 COG1069, AraB, Ribulose kinase [Energy production and conversion].
Length = 544
Score = 469 bits (1210), Expect = e-161
Identities = 198/427 (46%), Positives = 253/427 (59%), Gaps = 23/427 (5%)
Query: 1 MEYLLSVDVGTSSVRAALVSTR-GKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIR 59
M Y++ VDVGT S RA + + G + AVRP +W P L EQ S D W +VC A+R
Sbjct: 2 MAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVR 61
Query: 60 DVTKD--VNPAQIKGVGVDATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQ 117
DV V+PA + G+GVDATCSLV +D + PL + P ++ NV+LWMDHRAV EA++
Sbjct: 62 DVVAKAGVDPADVVGIGVDATCSLVVIDRDGNPLAVLPEFPNNPNVILWMDHRAVEEAEE 121
Query: 118 INATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQ 177
INAT H VLD GGKISPEM PKL+WLK+ P W RA FDL D+LTWKLTG +
Sbjct: 122 INATCHPVLDYYGGKISPEMMIPKLMWLKREAPAV-WERAAHIFDLADWLTWKLTGSIAR 180
Query: 178 SLCSLVCKWTYDAY-DRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVA 236
S C+ CKW + + W+ D+F+KIGL DL++ + + G+P+G G++ E A
Sbjct: 181 SRCTAGCKWNWLEHEGGLWSADFFDKIGLDDLREL-DSKLPEDIVPAGEPVG-GLTPEAA 238
Query: 237 RALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQ 296
+ LGL GT VS +IDAHAGA+ + L +I GTSTCHM LS K
Sbjct: 239 QELGLPEGTVVSAGIIDAHAGAVGVGGAQ--------PGSLAMIAGTSTCHMLLSEKPRF 290
Query: 297 VPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHP------ATQSIMKKLNTEELAP 350
VPGVWGPY +LP L E GQSATG LLDH++ HP A + E LA
Sbjct: 291 VPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQ 350
Query: 351 VIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYL 410
++ L L + HV F+GNRSPLAD +KG+I GLTLD+S SL LY
Sbjct: 351 RLELLTEAAAAIPP--LASGLHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYR 408
Query: 411 ATIQALA 417
A ++A A
Sbjct: 409 ALLEATA 415
Score = 130 bits (328), Expect = 3e-32
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 2/103 (1%)
Query: 462 LTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDA 521
L + HV F+GNRSPLAD +KG+I GLTLD+S SL LY A ++A A+GTR I++
Sbjct: 365 LASGLHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIET 424
Query: 522 MHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQEK 564
G AI TL SGG+ KNPL +Q +ADVTG V+ P
Sbjct: 425 FEDQGI--AIDTLFASGGIRKNPLLMQLYADVTGRPVVIPASD 465
Score = 48.9 bits (117), Expect = 5e-06
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 411 ATIQALADVTKD--VNPAQIKGVGVDATCSLVALDTNHQPLTISPTDTRHSTELTADFHV 468
A A+ DV V+PA + G+GVDATCSLV +D + PL + P + + +
Sbjct: 55 AVCAAVRDVVAKAGVDPADVVGIGVDATCSLVVIDRDGNPLAVLPEFPNNP-----NVIL 109
Query: 469 WPD 471
W D
Sbjct: 110 WMD 112
>gnl|CDD|198346 cd07768, FGGY_RBK_like, Ribulokinase-like carbohydrate kinases; a
subfamily of the FGGY family of carbohydrate kinases.
This subfamily is composed of ribulokinases (RBKs) and
similar proteins from bacteria and eukaryota. RBKs
catalyze the MgATP-dependent phosphorylation of a
variety of sugar substrates including L- and/or
D-ribulose. Members of this subfamily contain two large
domains separated by a deep cleft that forms the active
site. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain. Members of this
subfamily belong to the FGGY family of carbohydrate
kinases.
Length = 465
Score = 308 bits (790), Expect = 4e-99
Identities = 148/430 (34%), Positives = 199/430 (46%), Gaps = 50/430 (11%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCP-KPQLYEQSSEDIWNSVCLAIRD 60
+Y++ VDVGT SVRA + G+ A RP + P EQ ED W +V A+R
Sbjct: 1 KYVIGVDVGTESVRAGVFDLNGRELASASRPYPVPVPYGAGWAEQDPEDWWPAVRTAVRA 60
Query: 61 VTK--DVNPAQIKGVGVDAT-CSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQ 117
V+P Q+ +GVDAT C++V LD QPLT LLW DHRA +A+
Sbjct: 61 AVAAAGVDPDQVAALGVDATSCTVVPLDAEGQPLT---------PALLWDDHRAADQANA 111
Query: 118 INATKHSVLDTVGGKI-SPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDET 176
IN L GGKI SPE PK+LWL + PDT W RA F + PD+L W+LTG
Sbjct: 112 INEVGGPALWDYGGKIVSPEWMLPKVLWLLQEAPDT-WNRADHFLEAPDWLGWRLTGKRP 170
Query: 177 QSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVA 236
+ CS V KW YDA + W F+K+G L + V P G + E A
Sbjct: 171 VATCSAVAKWGYDAREGEWANSVFDKLGDPRLTA---AKLPAVVA-PLTRAGGLLP-EAA 225
Query: 237 RALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQ 296
GL PGT V+V M DAHAG +A+ PG + L+ GTS H +S + +
Sbjct: 226 EKTGLPPGTAVAVGMTDAHAGQIAVGVV-TPG-------RFVLVLGTSIVHKGVSEELHE 277
Query: 297 VPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNT-----EELAPV 351
+ G Y ILP LE GQSATG + ++ + + A
Sbjct: 278 D-EMCGAVYSAILPGYWWLEGGQSATGGIFLWFVDVGRLAATFDEAQEKGVALDAAAAER 336
Query: 352 IQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLA 411
L F+GNRSP D +++G + GLTL + +Y A
Sbjct: 337 GPQL-------------RGLLALDRFNGNRSPFVDPELRGFLLGLTLPTDR---ADIYRA 380
Query: 412 TIQALADVTK 421
++A+A T+
Sbjct: 381 LLEAVAFGTR 390
Score = 95.7 bits (238), Expect = 6e-21
Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Query: 464 ADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMH 523
F+GNRSP D +++G + GLTL + +Y A ++A+A+GTR I++A H
Sbjct: 341 RGLLALDRFNGNRSPFVDPELRGFLLGLTLPTDR---ADIYRALLEAVAFGTRLIVEAFH 397
Query: 524 AAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQEK 564
G P + L +GG A++ L++Q HADVTG V EK
Sbjct: 398 GLG-YPEVGPLYAAGGGARSHLWMQIHADVTGRPVRLAAEK 437
Score = 40.2 bits (94), Expect = 0.002
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 399 DSSETSLVTLYLATIQALADVTK--DVNPAQIKGVGVDAT-CSLVALDTNHQPLT 450
+E + A A+ V+P Q+ +GVDAT C++V LD QPLT
Sbjct: 41 GWAEQDPEDWWPAVRTAVRAAVAAAGVDPDQVAALGVDATSCTVVPLDAEGQPLT 95
>gnl|CDD|198360 cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and
ribulose-phosphate 3-epimerase fusion proteins-like;
belongs to the FGGY family of carbohydrate kinases.
This subgroup is composed of uncharacterized proteins
with similarity to carbohydrate kinases. Some members
are carbohydrate kinase and ribulose-phosphate
3-epimerase fusion proteins. Carbohydrate kinases
catalyze the ATP-dependent phosphorylation of their
carbohydrate substrate to produce phosphorylated sugar
and ADP. The presence of Mg2+ is required for catalytic
activity. This subgroup shows high homology to
characterized ribulokinases and belongs to the FGGY
family of carbohydrate kinases, the monomers of which
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 484
Score = 256 bits (656), Expect = 4e-79
Identities = 130/402 (32%), Positives = 186/402 (46%), Gaps = 41/402 (10%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61
Y+L +D GT SVRA L T G+ A P P+P EQ+ ED W ++ A+R+
Sbjct: 1 PYVLGIDGGTESVRAGLFDTTGRPLGSAAAPYGTTHPRPGWAEQNPEDWWEALGAAVREA 60
Query: 62 TK--DVNPAQIKGVGVDAT-CSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQI 118
+ + + D T C++VALD PL R +LWMD RA EA ++
Sbjct: 61 LAEAGIAAPDVAALCCDTTCCTVVALDAAGTPL---------RPAILWMDVRAAEEAARV 111
Query: 119 NATK--HSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDET 176
AT L+ GG +S E PK +WLKKN PD + RA + D+L ++LTG
Sbjct: 112 LATGDDALRLNGSGGGVSAEWMVPKAMWLKKNEPDV-YARAATICEAQDYLNFRLTGRWC 170
Query: 177 QSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVA 236
SL + +W YD + ED + +G+ DL + V G+ +G ++ E A
Sbjct: 171 GSLNNAAVRWNYDTLNGGPPEDLYAALGMPDLLDK----LPQRVLAVGEVVG-SLTDEAA 225
Query: 237 RALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQ 296
LGL GTPV+ DA G + L PG ++ LI G+S H+ ++ ++
Sbjct: 226 AHLGLPGGTPVAQGGADAFVGMIG-LGVIEPG-------QMALITGSSHLHLGVTDREFH 277
Query: 297 VPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLN 356
PGVWG Y + + P T L+E GQ++TG +L + EE A V
Sbjct: 278 APGVWGTYPDAVYPGTWLVEGGQTSTGSVLKWFKDLIGGGDDNGYDELNEEAAAV----- 332
Query: 357 HVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTL 398
S L + F GNR+P D +G I GLTL
Sbjct: 333 ----PPGSEGLVVLDY----FQGNRTPYTDPLARGAIWGLTL 366
Score = 79.3 bits (196), Expect = 1e-15
Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 472 FHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAI 531
F GNR+P D +G I GLTL + + Y A ++ +AYGTRHI DAM AAG +
Sbjct: 345 FQGNRTPYTDPLARGAIWGLTLGHTRAHV---YRAILEGVAYGTRHIFDAMEAAGY--EV 399
Query: 532 STLLVSGGLAKNPLYVQTHADVTG 555
S ++ +GG ++ L++Q HADV G
Sbjct: 400 SEIVAAGGATRSRLWLQIHADVIG 423
Score = 30.4 bits (69), Expect = 3.2
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 422 DVNPAQIKGVGVDAT-CSLVALDTNHQPL 449
+ + + D T C++VALD PL
Sbjct: 65 GIAAPDVAALCCDTTCCTVVALDAAGTPL 93
>gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases. This family is
predominantly composed of glycerol kinase (GK) and
similar carbohydrate kinases including rhamnulokinase
(RhuK), xylulokinase (XK), gluconokinase (GntK),
ribulokinase (RBK), and fuculokinase (FK). These enzymes
catalyze the transfer of a phosphate group, usually from
ATP, to their carbohydrate substrates. The monomer of
FGGY proteins contains two large domains, which are
separated by a deep cleft that forms the active site.
One domain is primarily involved in sugar substrate
binding, and the other is mainly responsible for ATP
binding. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain.
Substrate-induced conformational changes and a divalent
cation may be required for the catalytic activity.
Length = 435
Score = 230 bits (589), Expect = 1e-69
Identities = 108/424 (25%), Positives = 170/424 (40%), Gaps = 47/424 (11%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y+L +DVGT+SV+A L +G + A R + PKP EQ E+IW ++C +R+
Sbjct: 1 YILGLDVGTTSVKAVLFDEQGNILAEASREYEVSYPKPGWVEQDPEEIWQALCEVLREAA 60
Query: 63 KDVNPAQIKGVGVDAT-CSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT 121
+ QI +GV + ++ +D N +PLT +LW D R E +++
Sbjct: 61 AQASGGQIAAIGVSSQGEGVILVDANGRPLT---------PAILWQDSRTAEECERLEEQ 111
Query: 122 KHS--VLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQSL 179
+ + + G + P PKLLWLK++ P+ + +A + D+L ++LTG+
Sbjct: 112 IGADEIYERTGLRPHPMFSGPKLLWLKEHRPEI-YSKADKILTVADYLAYRLTGEFVIDY 170
Query: 180 CSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVARAL 239
+ +D R W+ + E G+ R + V PG+ G +S E A L
Sbjct: 171 SNASRTMLFDIQTRDWDPELLEAAGIP-------RELLPEVVPPGEVAGA-ISAEAAALL 222
Query: 240 GLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQVPG 299
GL PGTPV D AL A G GTS A+S +
Sbjct: 223 GLPPGTPVVAGGHDQQCAALGAGAVD-EGDAAL-------SAGTSEVITAVSEPEPATDE 274
Query: 300 VWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVI 359
Y I P ++ E+ G LL + E +
Sbjct: 275 GLLCYPAAI-PGKYVTEASFFTGGALLRWFRDEFGL----------REDGSDYEAAAQEA 323
Query: 360 DTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADV 419
+ P F G+ +P D +G I GLTL T+ +Y A ++ +A
Sbjct: 324 PNSGPN----GLLILPHFSGSGTPYWDPAARGAIFGLTLG---TTRADIYRALLEGIAYE 376
Query: 420 TKDV 423
+D
Sbjct: 377 LRDN 380
Score = 86.2 bits (214), Expect = 5e-18
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 461 ELTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMD 520
+ P F G+ +P D +G I GLTL T+ +Y A ++ +AY R +D
Sbjct: 326 SGPNGLLILPHFSGSGTPYWDPAARGAIFGLTLG---TTRADIYRALLEGIAYELRDNLD 382
Query: 521 AMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQEK 564
A+ AAG I + V+GG +++ L++Q AD+ G V P+ +
Sbjct: 383 ALEAAGI--KIDRIRVTGGGSRSDLWLQILADIFGLPVETPEVR 424
Score = 34.2 bits (79), Expect = 0.17
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 411 ATIQALADVTKDVNPAQIKGVGVDAT-CSLVALDTNHQPLT--ISPTDTRHSTELTA 464
A + L + + QI +GV + ++ +D N +PLT I D+R + E
Sbjct: 51 ALCEVLREAAAQASGGQIAAIGVSSQGEGVILVDANGRPLTPAILWQDSRTAEECER 107
>gnl|CDD|198358 cd07781, FGGY_RBK, Ribulokinases; belongs to the FGGY family of
carbohydrate kinases. This subgroup is predominantly
composed of bacterial ribulokinases (RBK) which catalyze
the MgATP-dependent phosphorylation of L(or D)-ribulose
to produce L(or D)-ribulose 5-phosphate and ADP. RBK
also phosphorylates a variety of other sugar substrates
including ribitol and arabitol. The reason why L-RBK can
phosphorylate so many different substrates is not yet
clear. The presence of Mg2+ is required for catalytic
activity. This group belongs to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 498
Score = 224 bits (573), Expect = 9e-67
Identities = 129/446 (28%), Positives = 191/446 (42%), Gaps = 59/446 (13%)
Query: 3 YLLSVDVGTSSVRAALVSTR-GKVSPIAVRPIALW-----CPK--PQLYEQSSEDIWNSV 54
Y + +D GT SVRA LV T G AV P P Q D +
Sbjct: 2 YAIGLDFGTLSVRALLVDTETGAELASAVVEYPHGVMGEYLPDLPPNQALQHPADYIEGL 61
Query: 55 CLAIRDVTKD--VNPAQIKGVGVDAT-CSLVALDTNHQPLTISPTGDDSRN--VLLWMDH 109
AI +V K+ V+P + G+GVD T + + +D + PL + P ++ + V LW DH
Sbjct: 62 ETAIPEVLKEAGVDPDDVVGIGVDTTGSTPIPVDEDGTPLCLLPEFKNNPHAYVKLWKDH 121
Query: 110 RAVSEADQINATKH----SVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPD 165
A EAD+I A H L GG S E PK+L + + P+ A + + D
Sbjct: 122 TAQKEADRITALAHERGEDYLRYYGGVYSSEWFWPKILHVLREAPEVY-EAADSWVEACD 180
Query: 166 FLTWKLTGD-----ETQSLCSLVCKWTYDAYDRRWN----EDYFEKI--GLGDLKQNGWR 214
++ +LTG +S C+ K + W +++ + L ++
Sbjct: 181 WIPAQLTGTTDPKKLKRSRCAAGHKAMWHE---EWGGLPSDEFLSALDPKLAGVRDK--- 234
Query: 215 AIGNTVKNPGQPIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDID 274
+ + G+ G +S E A LGL G V+V DAH GA+ A + PG
Sbjct: 235 -LSGPIYTSGEKAGG-LSPEWAARLGLPEGIAVAVGAFDAHMGAVG--AGAEPG------ 284
Query: 275 SKLGLICGTSTCHMALSAKKVQVPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHP 334
L + GTSTC + L+ K VPG+ G I+P E+GQSA G + + N
Sbjct: 285 -TLVKVIGTSTCDIMLAEKVGDVPGICGVVDGSIIPGYIGYEAGQSAVGDIFAWFVEN-- 341
Query: 335 ATQSIMKKLNTEELAPVIQYLNHVIDTQHSTE--LTA-DFHVWPDFHGNRSPLADADMKG 391
S+ ++ V+ L+ E L A D W ++GNR+ L D + G
Sbjct: 342 LVPSLYEEEAKRRGDEVLPLLSEKAAKLPPGESGLLALD---W--WNGNRTVLVDQRLTG 396
Query: 392 MICGLTLDSSETSLVTLYLATIQALA 417
+I GLTL T +Y A I+A A
Sbjct: 397 LILGLTLQ---TKAEEIYRALIEATA 419
Score = 85.0 bits (211), Expect = 2e-17
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 472 FHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAI 531
++GNR+ L D + G+I GLTL T +Y A I+A A+G R I++ G +
Sbjct: 382 WNGNRTVLVDQRLTGLILGLTLQ---TKAEEIYRALIEATAFGARAIIERFEEQGV--PV 436
Query: 532 STLLVSGGLA-KNPLYVQTHADVTGCNV 558
++ +GG+A KNPL +Q +ADV +
Sbjct: 437 ERVIAAGGIAQKNPLLMQIYADVLNRPI 464
Score = 31.4 bits (72), Expect = 1.3
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 413 IQALADVTKDV------NPAQIKGVGVDAT-CSLVALDTNHQPL 449
I+ L +V +P + G+GVD T + + +D + PL
Sbjct: 58 IEGLETAIPEVLKEAGVDPDDVVGIGVDTTGSTPIPVDEDGTPL 101
>gnl|CDD|235221 PRK04123, PRK04123, ribulokinase; Provisional.
Length = 548
Score = 201 bits (513), Expect = 1e-57
Identities = 133/448 (29%), Positives = 192/448 (42%), Gaps = 58/448 (12%)
Query: 1 MEYLLSVDVGTSSVRAALVSTR-GKVSPIAVRPIALW-----CPKPQLY-EQSSEDIWNS 53
M Y++ +D GT SVRA LV G+ AV W P Q D S
Sbjct: 2 MAYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIES 61
Query: 54 VCLAIRDVTKD--VNPAQIKGVGVDAT-CSLVALDTNHQPLTISPTGDDSRN--VLLWMD 108
+ AI V K+ V+PA + G+GVD T + +D + PL + P ++ + V LW D
Sbjct: 62 LEAAIPAVLKEAGVDPAAVVGIGVDFTGSTPAPVDADGTPLALLPEFAENPHAMVKLWKD 121
Query: 109 HRAVSEADQINATKHS-----VLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDL 163
H A EA++IN H + +GG S E K+L + + P + A + +
Sbjct: 122 HTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWFWAKILHVLREDPAV-YEAAASWVEA 180
Query: 164 PDFLTWKLTGDETQ-----SLCSLVCKWTYDAYDRRWN----EDYFEKI--GLGDLKQNG 212
D++ LTG S C+ K + W D+F+ + L ++
Sbjct: 181 CDWVVALLTGTTDPQDIVRSRCAAGHKALWHE---SWGGLPSADFFDALDPLLARGLRD- 236
Query: 213 WRAIGNTVKNPGQPIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPED 272
+ G+P G ++ E A+ LGL G VSV DAH GA+ A + PG
Sbjct: 237 --KLFTETWTAGEPAGT-LTAEWAQRLGLPEGVAVSVGAFDAHMGAVG--AGAEPG---- 287
Query: 273 IDSKLGLICGTSTCHMALSAKKVQVPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINN 332
L + GTSTC + L+ K+ VPG+ G I+P E+GQSA G +
Sbjct: 288 ---TLVKVMGTSTCDILLADKQRAVPGICGQVDGSIVPGLIGYEAGQSAVGDIFAWFARL 344
Query: 333 HPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTE--LTA-DFHVWPDFHGNRSPLADADM 389
K +++ L Q E L A D W F+G R+PLAD +
Sbjct: 345 --LVPPEYKDEAEARGKQLLELLTEAAAKQPPGEHGLVALD---W--FNGRRTPLADQRL 397
Query: 390 KGMICGLTLDSSETSLVTLYLATIQALA 417
KG+I GLTL T +Y A I+A A
Sbjct: 398 KGVITGLTLG---TDAPDIYRALIEATA 422
Score = 86.1 bits (214), Expect = 9e-18
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 6/88 (6%)
Query: 472 FHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAI 531
F+G R+PLAD +KG+I GLTL T +Y A I+A A+GTR IM+ G +
Sbjct: 385 FNGRRTPLADQRLKGVITGLTLG---TDAPDIYRALIEATAFGTRAIMECFEDQGV--PV 439
Query: 532 STLLVSGGLA-KNPLYVQTHADVTGCNV 558
++ +GG+A KNP+ +Q +ADV +
Sbjct: 440 EEVIAAGGIARKNPVLMQIYADVLNRPI 467
Score = 35.2 bits (82), Expect = 0.11
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 414 QALADVTKD--VNPAQIKGVGVDAT-CSLVALDTNHQPLTISP--TDTRHSTELTADFHV 468
A+ V K+ V+PA + G+GVD T + +D + PL + P + H A +
Sbjct: 64 AAIPAVLKEAGVDPAAVVGIGVDFTGSTPAPVDADGTPLALLPEFAENPH-----AMVKL 118
Query: 469 WPDFHG 474
W D H
Sbjct: 119 WKD-HT 123
>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
bacterial and archaeal xylulose kinases-like proteins
with similarity to bacterial D-xylulose kinases (XK,
also known as xylulokinase; EC 2.7.1.17), which catalyze
the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 492
Score = 193 bits (492), Expect = 4e-55
Identities = 118/450 (26%), Positives = 194/450 (43%), Gaps = 66/450 (14%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
YLL +D+GTSS +A L G+V A R L P+P EQ E W++VC IR++
Sbjct: 1 YLLGIDIGTSSTKAVLFDLDGEVLAQASREYELSTPQPGWAEQDPEVWWDAVCEIIRELV 60
Query: 63 KD--VNPAQIKGVGVDAT-CSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQIN 119
V+P++IK +GV ++V +D + +PL R +++MD RA E +++
Sbjct: 61 AKAGVDPSEIKAIGVSGQGPTVVPVDKDGRPL---------RPAIIYMDRRAKEEVEELK 111
Query: 120 AT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTG---- 173
+ + + G + + PK+LW K+N P+ W R F ++ +KLTG
Sbjct: 112 ERIGEEEIFERTGNPLDSQYVAPKILWFKRNEPEV-WERTRKFLQSNSYIVYKLTGELAV 170
Query: 174 DETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVST 233
D + + S + YD W+E+ + +G+ + + PG +G V+
Sbjct: 171 DHSSASGSGL----YDIRKGEWSEELLDLLGI-------PEDLLPKLVRPGDIVGT-VTE 218
Query: 234 EVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAK 293
E A GL GTPV DA A AL G+ E D + GTS + ++ +
Sbjct: 219 EAAEETGLPAGTPVVAGGADAAAAALGA------GVVEPGD--AMEMLGTSGVIIVVTDR 270
Query: 294 KVQVPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQ 353
P + + ++P T+LL G S G L +N TE
Sbjct: 271 PKFDPRLISSPH--VVPGTYLLNGGMSTGGAALRWFRDN-------FGPEETEGGLDAYD 321
Query: 354 YLNHVIDT--QHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLA 411
L + + L P G R+P+ D D +G+ GLTL + LY A
Sbjct: 322 ELEEEAEKVPPGADGLL----FLPYLAGERTPIWDPDARGVFFGLTLG---HTRAHLYRA 374
Query: 412 TIQALA-------DVTKD--VNPAQIKGVG 432
++ +A ++ ++ V +++ VG
Sbjct: 375 VLEGVAYALRHILEIAEEAGVKVSRVVAVG 404
Score = 73.0 bits (180), Expect = 1e-13
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P G R+P+ D D +G+ GLTL + LY A ++ +AY RHI++ AG
Sbjct: 341 PYLAGERTPIWDPDARGVFFGLTLG---HTRAHLYRAVLEGVAYALRHILEIAEEAGV-- 395
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCP 561
+S ++ GG AK+ L++Q ADV G V+ P
Sbjct: 396 KVSRVVAVGGGAKSRLWMQIKADVLGLPVVTP 427
Score = 38.3 bits (90), Expect = 0.009
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 411 ATIQALADVTKD--VNPAQIKGVGVDAT-CSLVALDTNHQPLTISPT--DTRHSTELTAD 465
A + + ++ V+P++IK +GV ++V +D + +PL + D R + E +
Sbjct: 51 AVCEIIRELVAKAGVDPSEIKAIGVSGQGPTVVPVDKDGRPLRPAIIYMDRR-AKEEVEE 109
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate
transport and metabolism].
Length = 502
Score = 171 bits (435), Expect = 6e-47
Identities = 112/456 (24%), Positives = 180/456 (39%), Gaps = 73/456 (16%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRG-------KVSPIAVRPIALWCPKPQLYEQSSEDIWNS 53
M+Y+L +D+GT+SV+A L G + P W EQ +++W +
Sbjct: 3 MKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWA------EQDPDELWQA 56
Query: 54 VCLAIRDVTK--DVNPAQIKGVGVDAT-CSLVALDTNHQPLTISPTGDDSRNVLLWMDHR 110
+ A+R + + ++P I +G+ LV LD N +PL R +LW D R
Sbjct: 57 ILEALRQLLEESKIDPDAIAAIGISGQGHGLVLLDANGEPL---------RPAILWNDTR 107
Query: 111 AVSEADQINATKHSVLDTVGGKISPEMET---PKLLWLKKNLPDTCWRRAGLFFDLPDFL 167
A E +++ + M PKLLWLK+N PD + +A + D+L
Sbjct: 108 AAEEVEELEERLGGEALYARTGLQA-MPGFTAPKLLWLKENEPD-LFAKAAKILLIKDYL 165
Query: 168 TWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPI 227
++LTG+ + D R+W+ + +GL + R + V PG+ +
Sbjct: 166 RYRLTGEFATEISDASGTGLLDIRTRKWDWELLAALGLPE------RDLLPPVVEPGEVL 219
Query: 228 GHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLIC---GTS 284
G ++ E A LGL GTPV V D A AL A G + GTS
Sbjct: 220 GT-LTPEAAEELGLPAGTPVVVGGGDNAAAALGAGAV-----------DPGDVSSSTGTS 267
Query: 285 TCHMALSAKKVQVPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLN 344
A + K + P + + LP ++ + G LL+ + +S + L
Sbjct: 268 GVVRAATDKPLDDPRGSIYTFCLGLPGWFIVMGANNTGGWLLEWLRELFGLAESYPELLE 327
Query: 345 TEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETS 404
P ++ P G R P AD +G GLTL +
Sbjct: 328 EALAVPAPAGAIGLLFL-------------PYLSGERGPHADPAARGGFVGLTLPHTRAH 374
Query: 405 L-------VTLYLAT-IQALADVTKDVNPAQIKGVG 432
L V LA ++AL ++ P++++ VG
Sbjct: 375 LARAVLEGVAFALADGLEALEELGG-KPPSRVRVVG 409
Score = 62.4 bits (152), Expect = 3e-10
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P G R P AD +G GLT + L A ++ +A+ ++A+ G P
Sbjct: 345 PYLSGERGPHADPAARGGFVGLT---LPHTRAHLARAVLEGVAFALADGLEALEELGGKP 401
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQEK 564
S + V GG A++PL++Q AD G V+ P+ +
Sbjct: 402 -PSRVRVVGGGARSPLWLQILADALGLPVVVPEVE 435
Score = 38.1 bits (89), Expect = 0.010
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 399 DSSETSLVTLYLATIQALADVTK--DVNPAQIKGVGVDAT-CSLVALDTNHQPLT--ISP 453
+E L+ A ++AL + + ++P I +G+ LV LD N +PL I
Sbjct: 44 GWAEQDPDELWQAILEALRQLLEESKIDPDAIAAIGISGQGHGLVLLDANGEPLRPAILW 103
Query: 454 TDTR 457
DTR
Sbjct: 104 NDTR 107
>gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
proteins with similarity to bacterial D-Xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 514
Score = 155 bits (395), Expect = 3e-41
Identities = 111/426 (26%), Positives = 171/426 (40%), Gaps = 59/426 (13%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y+L++D+GTS V+AALVS G++ A EQ ED W++V A R +
Sbjct: 1 YVLAIDLGTSGVKAALVSPDGRLVASATEAYETHYLPGGGAEQDPEDWWDAVVRATRRLL 60
Query: 63 KD--VNPAQIKGVGVDATCS-LVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQIN 119
+D VNP ++ G+ +V +D + +PL R ++WMD RA EA+++
Sbjct: 61 EDSGVNPRRVAGISFSGQMQGVVPVDEDGRPL---------RPAIIWMDQRAAPEAERLM 111
Query: 120 ATKHSVLD-----------TVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLT 168
V T G S + K+LWL+ N PD + + F D D+L
Sbjct: 112 EGLGKVAGYGLKLLKWLRLTGGAPKSGKDPLAKILWLRDNEPDV-YAKTYKFLDAKDYLN 170
Query: 169 WKLTGDETQSLCSLVCKWTYD--AYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQP 226
+LTG W D RW+E+ G+ R +
Sbjct: 171 LRLTGRFATDPDDASLTWLTDNRDGRIRWSEELLAAAGID-------REKLPELVPSTDV 223
Query: 227 IGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTS-- 284
+G V E AR LGL GTPV DA A A+ G D D+ L L GTS
Sbjct: 224 VG-TVLPEAARELGLPEGTPVVAGGGDASAAAV------GAGAVADGDAHLYL--GTSSW 274
Query: 285 -TCHMALSAKKVQVPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKL 343
H+ K V I P +L+ + Q G L+ + + + +
Sbjct: 275 IATHV--PFPKTDVRHRIFSLPHAI-PGKYLVVAEQETAGGALEWLKDLLLQDEDGLADE 331
Query: 344 NTEELAPVIQYLNHVIDTQHSTELTAD---FHVWPDFHGNRSPLADADMKGMICGLTLDS 400
+ + L+ + S ++ F W HG RSP+ D + +G L+L++
Sbjct: 332 EGRSVY---ERLDELAA---SAPPGSNGLIFLPW--LHGERSPVEDPNARGGFFNLSLET 383
Query: 401 SETSLV 406
+ L+
Sbjct: 384 TRADLL 389
Score = 56.5 bits (137), Expect = 2e-08
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P HG RSP+ D + +G L+L+++ L+ A ++ +A R +++A+
Sbjct: 358 PWLHGERSPVEDPNARGGFFNLSLETTRADLL---RAVLEGVALNLRWLLEAVERFLGRR 414
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNV 558
+ L GG A++ L+ Q ADV G +
Sbjct: 415 -LGELRFVGGGARSDLWCQIIADVLGRPI 442
Score = 29.1 bits (66), Expect = 6.3
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 408 LYLATIQALADVTKD--VNPAQIKGVGVDATCS-LVALDTNHQPLT--ISPTDTRHSTE 461
+ A ++A + +D VNP ++ G+ +V +D + +PL I D R + E
Sbjct: 48 WWDAVVRATRRLLEDSGVNPRRVAGISFSGQMQGVVPVDEDGRPLRPAIIWMDQRAAPE 106
>gnl|CDD|130301 TIGR01234, L-ribulokinase, L-ribulokinase. This enzyme catalyzes
the second step in arabinose catabolism. The most
closely related protein subfamily outside the scope of
this model includes ribitol kinase from E. coli [Energy
metabolism, Sugars].
Length = 536
Score = 153 bits (389), Expect = 2e-40
Identities = 129/452 (28%), Positives = 190/452 (42%), Gaps = 71/452 (15%)
Query: 3 YLLSVDVGTSSVRAALVSTR-GKVSPIAVRPIALW-----CPKPQL------YEQSSEDI 50
Y + VD GT S RA V G+ AV W PK Q D
Sbjct: 2 YAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADY 61
Query: 51 WNSVCLAIRDVTKD--VNPAQIKGVGVDAT-CSLVALDTNHQPLTISPTGDDSRN--VLL 105
+ AI V + V+PA + G+GVD T C+ +D++ PL + P ++ + L
Sbjct: 62 IEVLEAAIPTVLAELGVDPADVVGIGVDFTACTPAPIDSDGNPLCLLPEFAENPHAYFKL 121
Query: 106 WMDHRAVSEADQINATKHS----VLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFF 161
W H A EAD+IN H+ L GG IS E K+L + + P ++ A +
Sbjct: 122 WKHHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWAKILQITEEDPAI-YQAADRWI 180
Query: 162 DLPDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNE-------DYFEKIGLG-------D 207
+L D++ +L+GD + C+ Y W+E +F+++
Sbjct: 181 ELADWIVAQLSGDIRRGRCTA-------GYKALWHESWGYPSASFFDELNPILNRHLPDK 233
Query: 208 LKQNGWRAIGNTVKNPGQPIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAP 267
L + W A G+P G ++ E A+ GL G V+V DAH GA+A P
Sbjct: 234 LFTDIWTA--------GEPAG-TLTPEWAQRTGLPEGVVVAVGNFDAHVGAVAAGIAQ-P 283
Query: 268 GIPEDIDSKLGLICGTSTCHMALSAKKVQVPGVWGPYYEVILPNTHLLESGQSATGKLLD 327
G L I GTSTCH+ + K+ VPG+ G I+P E+GQSA G +
Sbjct: 284 G-------ALVKIMGTSTCHVLIGDKQRAVPGMCGVVDGGIVPGFIGYEAGQSAVGDIFA 336
Query: 328 HIINN--HPATQSIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLA 385
P ++ + + + +H + D+ +GNRSPL
Sbjct: 337 WFGKVCVPPELKTEANASQKQLHEALSEAAAKQPSGEHGL-VALDWF-----NGNRSPLV 390
Query: 386 DADMKGMICGLTLDSSETSLVTLYLATIQALA 417
D +KG+I GLTL T LY A I+A A
Sbjct: 391 DQRLKGVITGLTLA---TDAPLLYRALIEATA 419
Score = 74.6 bits (183), Expect = 5e-14
Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 6/90 (6%)
Query: 472 FHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAI 531
F+GNRSPL D +KG+I GLTL T LY A I+A A+GTR IM+ +G +
Sbjct: 382 FNGNRSPLVDQRLKGVITGLTLA---TDAPLLYRALIEATAFGTRMIMETFTDSGV--PV 436
Query: 532 STLLVSGGLA-KNPLYVQTHADVTGCNVLC 560
L+ +GG+A KNP+ +Q +ADVT +
Sbjct: 437 EELMAAGGIARKNPVIMQIYADVTNRPLQI 466
Score = 31.0 bits (70), Expect = 1.8
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 423 VNPAQIKGVGVDAT-CSLVALDTNHQPLTISP 453
V+PA + G+GVD T C+ +D++ PL + P
Sbjct: 78 VDPADVVGIGVDFTACTPAPIDSDGNPLCLLP 109
>gnl|CDD|212662 cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This
subfamily consists of uncharacterized hypothetical
bacterial proteins with similarity to Escherichia coli
sugar kinase ygcE , whose functional roles are not yet
clear. Escherichia coli ygcE is recognized by this
model, but is not present in the alignment as it
contains a deletion relative to other members of the
group. These proteins belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 488
Score = 131 bits (331), Expect = 8e-33
Identities = 93/341 (27%), Positives = 138/341 (40%), Gaps = 70/341 (20%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWC-PKPQLYEQSSEDIWNSVCLAIRDV 61
Y+L++D GT SVRA L +G + PI + PKP EQ + W ++C A R++
Sbjct: 1 YVLAIDCGTQSVRALLFDRQGNLVAKGQVPIEPYYSPKPGWAEQDPDYYWQALCEACREL 60
Query: 62 TKD--VNPAQIKGVGVD---ATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEAD 116
+ V+P +I GV + T V LD + +PL R +LW+D RA +
Sbjct: 61 WEQIPVDPGRIAGVALTTQRETF--VLLDKDGKPL---------RPAILWLDQRAAEQLP 109
Query: 117 QINATKHSVLDTVGGKISPEMETP---KLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTG 173
+ +L + GK P K W+++N P+ W + F L +LT+KLTG
Sbjct: 110 PLAW-WIRLLFKLIGKPETIDVIPAEAKANWIRENEPEI-WAKTAKFLLLSGYLTYKLTG 167
Query: 174 DETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKN--------PGQ 225
S+ S V +D RRW K+ + G ++ PG+
Sbjct: 168 RFVDSVASQVGYIPFDYKKRRWA------------KKEDLKWQGFPIEPEQLPELVPPGK 215
Query: 226 PIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTST 285
IG ++ E A A GL GTPV D A L A + I L L GT+
Sbjct: 216 LIGT-ITAEAAEATGLPEGTPVIAGGSD---KACETLGAGA--LEPGIAC-LSL--GTT- 265
Query: 286 CHMALSAKKVQVPGVWGPYYEV---------ILPNTHLLES 317
V G Y+E ++P + E
Sbjct: 266 ---------ATVNGTSSRYFEPDRFFPAYPAVIPGGYNPEI 297
Score = 43.0 bits (102), Expect = 3e-04
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 478 PLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVS 537
P D + +G I G + LY A I+ +AY R ++ + I L VS
Sbjct: 357 PHWDPEARGAIIGF---GDVHTRAHLYRAIIEGIAYALREGLERIEKRTGVK-IKKLRVS 412
Query: 538 GGLAKNPLYVQTHADVTGCNVLCPQ 562
GG +++ L Q AD+ G V P
Sbjct: 413 GGGSQSDLICQITADIFGLPVERPH 437
>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like
D-xylulose kinases; a subgroup of the FGGY family of
carbohydrate kinases. This subgroup is predominantly
composed of bacterial D-xylulose kinases (XK, also known
as xylulokinase; EC 2.7.1.17), which catalyze the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. D-xylulose has been used as a source of carbon
and energy by a variety of microorganisms. Some
uncharacterized sequences are also included in this
subgroup. The prototypical member of this CD is
Escherichia coli xylulokinase (EcXK), which exists as a
dimer. Each monomer consists of two large domains
separated by an open cleft that forms an active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain. The presence of Mg2+ or Mn2+
is required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 482
Score = 129 bits (326), Expect = 4e-32
Identities = 74/258 (28%), Positives = 118/258 (45%), Gaps = 40/258 (15%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y L +D+GTS V+A LV G+V A L PKP EQ ED W + AIR++
Sbjct: 1 YYLGIDLGTSGVKALLVDEDGEVVASASAEYPLSQPKPGWSEQDPEDWWEATKAAIRELL 60
Query: 63 K--DVNPAQIKGVGVDATCS-----LVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEA 115
+ +++G+G+ S LV LD + + L R +LW D R +E
Sbjct: 61 AKSGIAGGEVRGIGL----SGQMHGLVLLDKDGKVL---------RPAILWNDQRTTAEC 107
Query: 116 DQINAT-KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLP-DFLTWKLTG 173
++I +++ G P PKLLWL+++ P+ + + LP D+L ++LTG
Sbjct: 108 EEITERVGGELIEITGNPALPGFTAPKLLWLREHEPEN-FAKIAKVL-LPKDYLRYRLTG 165
Query: 174 DETQSLCSLV----CKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGH 229
+ + + V D R W+++ + +G+ RAI + + G
Sbjct: 166 E----IATDVSDASGTLLLDVAKRDWSDELLDALGID-------RAILPELYESSEVTGT 214
Query: 230 GVSTEVARALGLNPGTPV 247
++ E A LGL GTPV
Sbjct: 215 -LTAEAAAELGLPAGTPV 231
Score = 57.9 bits (141), Expect = 8e-09
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 474 GNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAIST 533
G R+P D + +G GLTL + L A ++ +A+ R ++ + G I
Sbjct: 340 GERTPHNDPNARGAFIGLTLSHTRAHLT---RAVLEGVAFSLRDSLEILRELGVP--IDR 394
Query: 534 LLVSGGLAKNPLYVQTHADVTGCNV 558
++ GG A++PL++Q ADV G V
Sbjct: 395 IIAIGGGARSPLWLQIQADVLGLPV 419
>gnl|CDD|212666 cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of bacterial L-xylulose kinases (L-XK, also
known as L-xylulokinase; EC 2.7.1.53), which catalyze
the ATP-dependent phosphorylation of L-xylulose to
produce L-xylulose 5-phosphate and ADP. The presence of
Mg2+ might be required for catalytic activity. Some
uncharacterized sequences are also included in this
subfamily. L-XKs belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 447
Score = 124 bits (315), Expect = 7e-31
Identities = 73/338 (21%), Positives = 133/338 (39%), Gaps = 36/338 (10%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
YLL +D GT+ +A L G+ +A R P+P EQ +++W +V IR++
Sbjct: 1 YLLGIDAGTTVTKAVLFDLDGREIAVASRRNPTLTPQPGYVEQDMDELWEAVAAVIRELL 60
Query: 63 KD--VNPAQIKGVGV----DATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEAD 116
+ V+ I G+GV D +D +P+ +L +D RA +
Sbjct: 61 EKAGVDAEDIAGIGVTGQGDGLW---LVDKEGKPV---------GPGILSLDSRAAELVE 108
Query: 117 QI--NATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGD 174
+ + T+ ++ + G + + L WLK++ P+ RAG D++ ++LTG+
Sbjct: 109 RWQEDGTEDAIFELTGQGLWAGQPSSLLAWLKEHEPER-LARAGTVLFCKDWIRFRLTGE 167
Query: 175 ETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTE 234
D +++++ + +GL ++ + + + I ++ E
Sbjct: 168 AATDPTDASGSSLLDLRTGQYDDELLDLLGLEEI----RDLLP-PIVDSAD-IVGTLTAE 221
Query: 235 VARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKK 294
A GL GTPV + D A AL L I GT + + LS
Sbjct: 222 AAALTGLPAGTPVVGGLFDVVACALGSGLVDE--------GDLCSIAGTWSINEVLSDDP 273
Query: 295 VQVPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINN 332
V +G + + ES ++ LD +
Sbjct: 274 VPEAEPFGYSLYLPPGYYLVEESSPTSAS-NLDWFLRT 310
Score = 41.8 bits (99), Expect = 7e-04
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 476 RSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLL 535
R D + + GL+ + LV A + +A+ R ++A+ T +
Sbjct: 349 RGSNVDPNARAGFFGLSAWHTRADLV---RAVYEGVAFAHRDHLEAL---RATGLPGEIR 402
Query: 536 VSGGLAKNPLYVQTHADVTGCNVLCPQEK 564
++GG A++P++ Q ADV G V + +
Sbjct: 403 LTGGAARSPVWAQMFADVLGLPVEVVEGE 431
>gnl|CDD|215880 pfam00370, FGGY_N, FGGY family of carbohydrate kinases, N-terminal
domain. This domain adopts a ribonuclease H-like fold
and is structurally related to the C-terminal domain.
Length = 245
Score = 114 bits (288), Expect = 6e-29
Identities = 76/266 (28%), Positives = 122/266 (45%), Gaps = 31/266 (11%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y+L +D GT+S +A + + +GKV A P AL PKP EQ E+IW ++ AIR +
Sbjct: 1 YVLGIDCGTTSTKAIVFNKQGKVVASASAPYALISPKPGWAEQDPEEIWQALAQAIRKIL 60
Query: 63 K--DVNPAQIKGVGVDATC-SLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQI- 118
+ ++P QIKG+G+ LV LD N +PL +LW D R + +
Sbjct: 61 QQSGISPKQIKGIGISGQGHGLVLLDKNDKPL---------YPAILWNDTRTAEIVENLK 111
Query: 119 -NATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTG---- 173
+ + G I P KL WLK++ P+ + RA F + D+L W+LTG
Sbjct: 112 EEGGADKLYEITGNTIWPGFTLSKLRWLKEHEPEI-FERARKFLLIHDYLRWRLTGQFTT 170
Query: 174 DETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVST 233
D + + +++ ++ W+E+ +G+ + + + G ++
Sbjct: 171 DYSDASGTMM----FNIKTLEWDEELLAILGIP-------PDLLPPLVESSEIYGT-LNP 218
Query: 234 EVARALGLNPGTPVSVSMIDAHAGAL 259
E A GL+ G PV D A AL
Sbjct: 219 EHAALFGLDEGIPVVGGGGDNQAAAL 244
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 118 bits (298), Expect = 2e-28
Identities = 79/272 (29%), Positives = 120/272 (44%), Gaps = 26/272 (9%)
Query: 5 LSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKD 64
L +D+GTS V+A LV +G+V P + P P EQ ED W++ AI+++ +
Sbjct: 1 LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQ 60
Query: 65 --VNPAQIKGVGVDATC-SLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT 121
IKG+G+ LV LD N + L R +LW D R E +++ A
Sbjct: 61 ASEMGQDIKGIGISGQMHGLVLLDANGEVL---------RPAILWNDTRTAQECEELEAE 111
Query: 122 --KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLP-DFLTWKLTGDETQS 178
VL+ G P PKLLW++K+ P+ + R LP D+L ++LTG+
Sbjct: 112 LGDERVLEITGNLALPGFTAPKLLWVRKHEPEV-FARIAKVM-LPKDYLRYRLTGEYVTE 169
Query: 179 LCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVARA 238
+D R W+++ + + L + + + G V EVA
Sbjct: 170 YSDASGTGWFDVAKRAWSKELLDALDLP-------ESQLPELIESSEKAG-TVRPEVAAR 221
Query: 239 LGLNPGTPVSVSMIDAHAGALALLATSAPGIP 270
LGL+ G PV+ D AGA+ T PG
Sbjct: 222 LGLSAGVPVAAGGGDNAAGAIG-TGTVDPGDA 252
Score = 50.8 bits (122), Expect = 1e-06
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P +G R+P D +G GLT T+ L A ++ + + R +D + AG P
Sbjct: 334 PYLNGERTPHLDPQARGSFIGLT---HNTTRADLTRAVLEGVTFALRDSLDILREAGGIP 390
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563
I ++ + GG AK+P + Q AD+ G V P+
Sbjct: 391 -IQSIRLIGGGAKSPAWRQMLADIFGTPVDVPEG 423
>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial D-xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. Some uncharacterized
sequences are also included in this subfamily. The
prototypical member of this subfamily is Escherichia
coli xylulokinase (EcXK), which exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. XKs do not have any known allosteric
regulators, and they may have weak but significant
activity in the absence of substrate. The presence of
Mg2+ or Mn2+ is required for catalytic activity. Members
of this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 482
Score = 117 bits (295), Expect = 3e-28
Identities = 103/422 (24%), Positives = 161/422 (38%), Gaps = 53/422 (12%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV- 61
+ +D+GTSSV+A+LV+ G++ A R P P EQ D W++V A+ +
Sbjct: 1 QYIGIDIGTSSVKASLVNLDGELVAFASREYTTSSPHPGWSEQDPADWWDAVQRALEALL 60
Query: 62 -TKDVNPAQIKGVGVDA-TCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQIN 119
+ I +GV V LD + L R +LW D R+ E ++
Sbjct: 61 DQAGDSAEDIAAIGVTGQMHGAVLLDQQGRVL---------RPAILWNDTRSAPEVTELK 111
Query: 120 ATKHSVLDTVGGKI-SPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQS 178
A + + ++ G I +P PKLLWLK+N P+ R A + D++ +LTG+
Sbjct: 112 ARLGAEIFSITGNIPTPGWTLPKLLWLKENEPEVFRRIARVLLP-KDYIRLRLTGELATD 170
Query: 179 LCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVARA 238
+DA R W++D G+ + + P + G V+ E AR
Sbjct: 171 RSDASGTLLFDAASREWSDDLCALYGIP-------EDLLPPLHEPSEIAGA-VTPEAARK 222
Query: 239 LGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQVP 298
GL GTPV D A AL P L GTS +S V P
Sbjct: 223 TGLKAGTPVVAGAGDNAAAALGAGVVD----PGQASLSL----GTSGVVAVVSEGPVPDP 274
Query: 299 GVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHV 358
+ +P + ++ G L + L L P +
Sbjct: 275 KGAVITFAHAVPGRWYQVTCTNSAGSALRW-----------ARDL----LGPADVSYAEM 319
Query: 359 IDTQHSTELTAD---FHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQA 415
+ + A+ F P +G R+P D + +G GLTL + L A ++
Sbjct: 320 AELAAQVPVGANGLLFL--PYLNGERTPYNDPNARGAFFGLTL---SHTRGHLARAVLEG 374
Query: 416 LA 417
+A
Sbjct: 375 VA 376
Score = 57.0 bits (138), Expect = 1e-08
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 466 FHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAA 525
F P +G R+P D + +G GLTL + L A ++ +A+ R ++ +H
Sbjct: 335 FL--PYLNGERTPYNDPNARGAFFGLTL---SHTRGHLARAVLEGVAFSLRDCLEVLHGM 389
Query: 526 GKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563
G A + + GG AK+ L+ Q ADV G V P
Sbjct: 390 GT--APQRIKLIGGGAKSELWRQILADVLGVPVELPAN 425
>gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of a group of gluconate kinases (GntK, also
known as gluconokinase; EC 2.7.1.12) encoded by the gntK
gene, which catalyzes the ATP-dependent phosphorylation
of D-gluconate and produce 6-phospho-D-gluconate and
ADP. The presence of Mg2+ might be required for
catalytic activity. The prototypical member of this
subfamily is GntK from Lactobacillus acidophilus. Unlike
Escherichia coli GntK, which belongs to the superfamily
of P-loop containing nucleoside triphosphate hydrolases,
members in this subfamily are homologous to glycerol
kinase, xylulose kinase, and rhamnulokinase from
Escherichia coli. They have been classified as members
of the FGGY family of carbohydrate kinases, which
contain two large domains separated by a deep cleft that
forms the active site. This model spans both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Some uncharacterized homologous sequences are also
included in this subfamily. The Lactobacillus gnt operon
contains a single gntK gene. The gnt operons of some
bacteria, such as Corynebacterium glutamicum, have two
gntK genes. For example, the C. glutamicum gnt operon
has both a gluconate kinase gntV gene (also known as
gntK) and a second hypothetical gntK gene (also known as
gntK2). Both gluconate kinases encoded by these genes
belong to this family, however the protein encoded by C.
glutamicum gntV is not included in this model as it is
truncated in the C-terminal domain.
Length = 440
Score = 110 bits (278), Expect = 4e-26
Identities = 63/254 (24%), Positives = 109/254 (42%), Gaps = 33/254 (12%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y+L VD+GT+S +A L G++ + L P EQ ++I+++V + +V
Sbjct: 1 YILGVDIGTTSTKAVLFDEDGRIVAGVSKRYPLETPPDGAAEQDPDEIFDAVLEILDEVV 60
Query: 63 KDVNPAQIKGVGVD-ATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT 121
+I V A SL+ALD + +PLT V+ W D RA A+++
Sbjct: 61 AKALGGRIAAVSFSSAMHSLIALDEDGEPLT---------PVITWADTRAAEYAEELKER 111
Query: 122 K--HSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQ-- 177
+ G + P KLLWLK+ P+ + +A F + +++ ++L G+
Sbjct: 112 LDGRELYQRTGCPLHPMYPLAKLLWLKEERPEL-FAKAAKFVSIKEYVLYRLFGELVVDY 170
Query: 178 SLCSLVCKWT--YDAYDRRWNEDYFEKIGLG--DLKQNGWRAIGNTVKNPGQPIGHGVST 233
S+ S T + + W+E+ E G+ L + + + + G+
Sbjct: 171 SIAS----GTGLLNIHTLDWDEEALEIAGISEEQLPE---------LVPTTEQLR-GLKA 216
Query: 234 EVARALGLNPGTPV 247
E A LGL TP
Sbjct: 217 ERAPKLGLPEDTPF 230
Score = 38.7 bits (91), Expect = 0.006
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 407 TLYLATIQALADVTKDVNPAQIKGVGVD-ATCSLVALDTNHQPLT--ISPTDTR 457
++ A ++ L +V +I V A SL+ALD + +PLT I+ DTR
Sbjct: 47 EIFDAVLEILDEVVAKALGGRIAAVSFSSAMHSLIALDEDGEPLTPVITWADTR 100
>gnl|CDD|217229 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal
domain. This domain adopts a ribonuclease H-like fold
and is structurally related to the N-terminal domain.
Length = 193
Score = 100 bits (251), Expect = 2e-24
Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 461 ELTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMD 520
PDF G R+P AD +G I GL SS T+L LY A ++ LA R I++
Sbjct: 80 APAGGLLFLPDFSGERAPGADPHARGAITGL---SSPTTLANLYRALLEGLALALRQILE 136
Query: 521 AMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
A+ G I ++ SGG ++NPL +Q AD G V P+
Sbjct: 137 ALAELGA--PIDRIIASGGGSRNPLLLQLLADALGRPVEVPE 176
Score = 99.3 bits (248), Expect = 5e-24
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 15/146 (10%)
Query: 279 LICGTSTCHMALSAKKV-QVPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQ 337
+ GTS+ + +++ V V GVWGPY LE GQSA G LL ++ A +
Sbjct: 3 VSLGTSSFVLVETSEPVLSVHGVWGPYTNE---GGWGLEGGQSAAGSLLGWLLQTLRARE 59
Query: 338 SIMKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLT 397
+ E LA ++ + PDF G R+P AD +G I GL
Sbjct: 60 ELRDAGLVESLA--------LLLALAADAPAGGLLFLPDFSGERAPGADPHARGAITGL- 110
Query: 398 LDSSETSLVTLYLATIQALADVTKDV 423
SS T+L LY A ++ LA + +
Sbjct: 111 --SSPTTLANLYRALLEGLALALRQI 134
>gnl|CDD|198377 cd07811, FGGY_D-XK_3, D-xylulose kinases, subgroup 3; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of proteobacterial D-xylulose kinases (XK,
also known as xylulokinase; EC 2.7.1.17). They share
high sequence similarity with Escherichia coli
xylulokinase (EcXK), which catalyzes the rate-limiting
step in the ATP-dependent phosphorylation of D-xylulose
to produce D-xylulose 5-phosphate (X5P) and ADP. Some
uncharacterized sequences are also included in this
subfamily. EcXK exists as a dimer. Each monomer consists
of two large domains separated by an open cleft that
forms an active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
The presence of Mg2+ or Mn2+ might be required for
catalytic activity. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 493
Score = 94.5 bits (235), Expect = 1e-20
Identities = 87/331 (26%), Positives = 126/331 (38%), Gaps = 47/331 (14%)
Query: 5 LSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKD 64
L++DVGT S RAALV G + A R P+ EQ D W C IR+V
Sbjct: 3 LAIDVGTGSTRAALVRIDGAIVAFAAREHEQTVPQFGWSEQRPLDWWQGACDCIREVLAR 62
Query: 65 VNPAQIKGVGVDATCSLVALDTNHQPLTISPTGDDSRN-VLLWMDHRAVSEADQINATK- 122
V P + + V C + H + + G+ +R+ LW D R + D A
Sbjct: 63 V-PGAAERIAVIGACGQM-----HGTVLLDDAGELTRDTAPLWNDKRTQPQVDAFEARNG 116
Query: 123 -HSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQSLCS 181
L + +P KL W ++N P + R D++ + LTG
Sbjct: 117 WEKYLAHLANPPAPAWPAFKLAWWRENDPQA-YSRLAKVLMPKDYINFMLTGAMATDRTE 175
Query: 182 LVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVARALGL 241
C + D R W+ E +GL D+ ++ P IG V+ A GL
Sbjct: 176 ASCSFLMDPATRSWSSQACETMGL-DVDLL------PPLRLPLDIIGQ-VTQPAADLTGL 227
Query: 242 NPGTPVSVSMIDAHAGALALLATSA--PGIPEDIDSKLGLICGTSTCHMALSAKKVQVP- 298
G PV V D A+ALL + PG+ D GTST ++ + + P
Sbjct: 228 PAGIPVLVGASDY---AMALLGSGVCEPGMGSD-------STGTSTIVTLVADRPLLHPE 277
Query: 299 --------GVWGPYYEVILPNTHLLESGQSA 321
G WG + LL++G A
Sbjct: 278 VSNLHTAEGAWGAFT--------LLDAGGDA 300
Score = 30.6 bits (69), Expect = 2.2
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 503 LYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
L+ A ++ +A+ + + P ++ SGG A+ L+++ A V G +L P+
Sbjct: 365 LHRAVLEGVAFAVWRHLRQLQKCQGRP--ERMIASGGGARTALWLKIKASVYGLPILVPR 422
Query: 563 E 563
E
Sbjct: 423 E 423
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 94.3 bits (235), Expect = 2e-20
Identities = 67/278 (24%), Positives = 110/278 (39%), Gaps = 29/278 (10%)
Query: 3 YLLSVDVGTSSVRAALV-STRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61
L VD GT S + ++ + G+V P L EQ + +++ A R
Sbjct: 1 LYLGVDCGTQSTKVIVLDAETGEVLAEGSAPHELISGSNGRREQQPQWWIDALVEAFRQA 60
Query: 62 TKD--VNPAQIKGVGVDATC-SLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQI 118
D ++P +++ +GV LV LD + L R LW D E ++
Sbjct: 61 LADAGIDPKEVRAIGVSGQQHGLVPLDAQGEVL---------RPAKLWCDTETAPENAEL 111
Query: 119 NATKH-----SVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLP-DFLTWKLT 172
+ + ++ +G KLLWLK++ P+ + + LP D+L + LT
Sbjct: 112 --IEKLGGAKAWIERLGNAPLTGYTASKLLWLKEHEPEN-FAKIATIL-LPHDYLNFWLT 167
Query: 173 GDETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVS 232
G +D R W+E+ + I D + A+ T+ +P +P G V
Sbjct: 168 GRYVTEYGDASGTGYFDVRTREWSEEVLDAI---DPALDLADAL-PTLLSPDEPAGT-VR 222
Query: 233 TEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIP 270
E A ALGL+ V+ D GA+ PG+
Sbjct: 223 PEAAEALGLSGDVLVASGGGDNMMGAIG-TGNVKPGVV 259
Score = 46.5 bits (111), Expect = 3e-05
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P F+G R+P + +G + GLT S+ T+ L A ++ +G R+ +D + A G
Sbjct: 339 PFFNGERTP-NLPNARGSLHGLT--SANTTRANLARAAVEGATFGLRYGLDLLRALGLKS 395
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563
+ + + GG AK+P + Q AD+ V+ P
Sbjct: 396 --TEIRLIGGGAKSPAWRQIIADIMNAEVVVPDT 427
>gnl|CDD|198353 cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of bacterial autoinducer-2 (AI-2) kinases and
similar proteins. AI-2 is a small chemical
quorum-sensing signal involved in interspecies
communication in bacteria. Cytoplasmic autoinducer-2
kinase, encoded by the lsrK gene from Salmonella
enterica serovar Typhimurium lsr (luxS regulated)
operon, is the prototypical member of this subfamily.
AI-2 kinase catalyzes the phosphorylation of
intracellular AI-2 to phospho-AI-2, which leads to the
inactivation of lsrR, the repressor of the lsr operon.
Members of this family are homologs of glycerol
kinase-like proteins and belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 452
Score = 90.6 bits (225), Expect = 2e-19
Identities = 74/274 (27%), Positives = 104/274 (37%), Gaps = 41/274 (14%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQS----SEDIWNSVCLAI 58
YLL+ D GT SVRA + G IAV Y S + W VC I
Sbjct: 1 YLLAFDAGTGSVRAVIFDLTGNQ--IAVSQEEWEHLAEPRYPGSMDFDPQVNWKLVCRCI 58
Query: 59 RDVTKDVNPAQIKGVGVDATC---SLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEA 115
R A I V AT +V D N + NV D RA E
Sbjct: 59 RQALARSGIAPIDIAAVSATSMREGIVLYDQNGNEIWACA------NV----DARAAEEV 108
Query: 116 DQINATKHSVLD----TVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKL 171
++ L+ G+ P+LLWLK++ PD + + + D++ +KL
Sbjct: 109 RELKEW-EPDLEKEIYRSSGQTFALGALPRLLWLKQHRPDI-YEKTASVTMISDWILYKL 166
Query: 172 TG----DETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPI 227
+G + + + + + +D R W+ + + +GL D I V G I
Sbjct: 167 SGVLAVEPSNAGTTGL----FDLKTRDWSPEMLDIVGLRD-------DIFPPVVETGTVI 215
Query: 228 GHGVSTEVARALGLNPGTPVSVSMIDAHAGALAL 261
G V+ E A GL GTPV D GAL L
Sbjct: 216 GT-VTNEAASETGLAAGTPVVAGGGDVQLGALGL 248
Score = 34.3 bits (79), Expect = 0.17
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 491 LTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAA-GKTPAISTLLVSGGLAKNPLYVQT 549
L+LD + TL+ A + A + +D + G P L+ +GG +K+ L+ Q
Sbjct: 368 LSLDPEKCGRATLFRALEENAAIVSAWNLDIITDFTGFEP--DYLVFAGGASKSKLWSQI 425
Query: 550 HADVTGCNVLCPQEK 564
ADVTG V+ P K
Sbjct: 426 LADVTGKPVVVPVVK 440
>gnl|CDD|130381 TIGR01314, gntK_FGGY, gluconate kinase, FGGY type. Gluconate is
derived from glucose in two steps. This model describes
one form of gluconate kinase, belonging to the FGGY
family of carbohydrate kinases. Gluconate kinase
phosphoryates gluconate for entry into the
Entner-Douderoff pathway [Energy metabolism, Sugars].
Length = 505
Score = 88.8 bits (220), Expect = 1e-18
Identities = 105/454 (23%), Positives = 186/454 (40%), Gaps = 69/454 (15%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIA--LWCPKPQLYEQSSEDIWNSVCLAIRD 60
Y++ VD+GT+S +A L GK+ +A I L+ P + E++ E+I+ +V + IR+
Sbjct: 1 YMIGVDIGTTSTKAVLFEENGKI--VAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIRE 58
Query: 61 VTKDV-NPAQIKGVGVDATC-SLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQI 118
V+ ++ + +I V SL+A D N QPLT ++ W D+RAV A+QI
Sbjct: 59 VSINLEDEDEILFVSFSTQMHSLIAFDENWQPLT---------RLITWADNRAVKYAEQI 109
Query: 119 NATK--HSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDET 176
+K + G I P K++WL+ PD +++A + ++ ++ +L G
Sbjct: 110 KESKNGFDIYRRTGTPIHPMAPLSKIIWLEAEHPDI-YQKAAKYLEIKGYIFQRLFGTYK 168
Query: 177 QSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVA 236
+ ++ ++ W+++ E G+ + + V P I + E A
Sbjct: 169 IDYSTASATGMFNLFELDWDKEALELTGIKE------SQLPKLV--PTTEIEENLPHEYA 220
Query: 237 RALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAK-KV 295
+ +G+ TP +I A G L+ L +A E + GTS + K K
Sbjct: 221 KKMGIQSSTPF---VIGASDGVLSNLGVNAIKKGE-----AAVTIGTSGAIRTVIDKPKT 272
Query: 296 QVPGVWGPYYEVILPNTHLLESGQSATGKLL-----DHIINNHPATQSIMKKLNTEELAP 350
G Y L H + G G + D I ++ T + + + L
Sbjct: 273 DEKGRIFCY---ALTKEHWVIGGPVNNGGDVLRWARDEIFDSEIETATRLGIDPYDVLTE 329
Query: 351 VIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSET------- 403
+ ++ D FH P G R+PL +A+ +G GLT +
Sbjct: 330 IAARVSPGAD-------GLLFH--PYLAGERAPLWNANARGSFFGLTYSHKKEHMIRAAL 380
Query: 404 -----SLVTLYLATIQALADVTKDVNPAQIKGVG 432
+L T+ LA ++ + D I+ G
Sbjct: 381 EGVIYNLYTVALALVEVMGD-----PLNMIQATG 409
Score = 32.6 bits (74), Expect = 0.68
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 399 DSSETSLVTLYLATIQALADVTKDV-NPAQIKGVGVDATC-SLVALDTNHQPLT--ISPT 454
+E + ++ A + + +V+ ++ + +I V SL+A D N QPLT I+
Sbjct: 39 GMAEENPEEIFEAVLVTIREVSINLEDEDEILFVSFSTQMHSLIAFDENWQPLTRLITWA 98
Query: 455 DTR 457
D R
Sbjct: 99 DNR 101
Score = 29.1 bits (65), Expect = 6.7
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 466 FHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAM-HA 524
FH P G R+PL + + +G GLT + ++ A ++ + Y + A+
Sbjct: 343 FH--PYLAGERAPLWNANARGSFFGLTYSHKKEHMIR---AALEGVIYNLYTVALALVEV 397
Query: 525 AGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
G + + +GG A + ++ Q +D+ ++ P+
Sbjct: 398 MGDPL--NMIQATGGFASSEVWRQMMSDIFEQEIVVPE 433
>gnl|CDD|182853 PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional.
Length = 520
Score = 80.4 bits (199), Expect = 6e-16
Identities = 73/286 (25%), Positives = 106/286 (37%), Gaps = 61/286 (21%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSE-DI---WNSVCL 56
M YL+++D GT S+RA + G IAV S E D+ W C
Sbjct: 2 MSYLMALDAGTGSIRAVIFDLNGN--QIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQ 59
Query: 57 AIRDVTKD--VNPAQIKGVGVDATCSL----VALDTNHQPLTISPTGDDSRNVLLW---- 106
IR + + + I V + S+ V D N + W
Sbjct: 60 CIRQALQKAGIPASDIAAV---SATSMREGIVLYDRNGTEI--------------WACAN 102
Query: 107 MDHRA---VSEADQINATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDL 163
+D RA VSE +++ + G+ P+LLWL + PD +R+A +
Sbjct: 103 VDARASREVSELKELHNNFEEEVYRCSGQTLALGALPRLLWLAHHRPDI-YRQAHTITMI 161
Query: 164 PDFLTWKLTGD--------ETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRA 215
D++ + L+G+ T L LV R W+ E GL
Sbjct: 162 SDWIAYMLSGELAVDPSNAGTTGLLDLV--------TRDWDPALLEMAGLRA-------D 206
Query: 216 IGNTVKNPGQPIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALAL 261
I VK G +GH V+ + A GL GTPV + D G L L
Sbjct: 207 ILPPVKETGTVLGH-VTAKAAAETGLRAGTPVVMGGGDVQLGCLGL 251
Score = 30.7 bits (70), Expect = 2.0
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 525 AGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQEK 564
+G P S+L+ +GG +K L+ Q ADVTG V P K
Sbjct: 406 SGVFP--SSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK 443
>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
composed of uncharacterized carbohydrate kinases. They
are sequence homologous to bacterial glycerol kinase and
have been classified as members of the FGGY family of
carbohydrate kinases. The monomers of FGGY proteins
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 430
Score = 79.0 bits (195), Expect = 1e-15
Identities = 73/298 (24%), Positives = 120/298 (40%), Gaps = 59/298 (19%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPK---PQLYEQSSEDIWNSVCLAIR 59
+DVGT++ + + G IA+R PK +++W ++ I
Sbjct: 1 LYCGIDVGTTNTKVVVFDDDGT--IIAIRKFK--TPKNVSDGGPYFDPDELWRAIEKVIC 56
Query: 60 DVTKDVNPAQIKGVGVDATC-SLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQI 118
P I + + + S V +D + +PL + W D R EA+++
Sbjct: 57 QALAAA-PDPIAAISITSVGESGVLVDADGEPLY---------PAIAWYDRRTEEEAEEL 106
Query: 119 NATKHSVLDT---VGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTG-- 173
+ L G P K+LWL+++ P+ W+RA + +PD++ ++LTG
Sbjct: 107 R-KQDPGLAIYEITGLPPDPIYSLFKILWLREHRPEV-WKRAYKWLHIPDYILFRLTGRP 164
Query: 174 --DETQSLCSLVCKWTYDAYDRRWNE---DYF--EKIGLGDLKQNGWRAIGNTVKNPGQP 226
D T + +L+ +D R W+E + F L +L +G IG
Sbjct: 165 VTDFTLASRTLL----FDIRAREWSEELLEMFGIPPDALPELVPSGTI-IGE-------- 211
Query: 227 IGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDI-DSKLGLICGT 283
VS + A +LGL+ GTPV + D G+ A P DI DS GT
Sbjct: 212 ----VSKDAAESLGLSTGTPVVLGGHDHPVGSYAAGVID----PGDILDS-----MGT 256
Score = 40.4 bits (95), Expect = 0.002
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLV-TLYLATIQALAYGTRHIMDAMHAAGKT 528
P G+ SP+ G GLT +S+ + ++ L + R ++ + G
Sbjct: 330 PYSRGSGSPIRSEIAGGAFYGLTDTTSQEDITRSVLEG----LTFEARSTLECLEKLG-- 383
Query: 529 PAISTLLVSGGLAKNPLYVQTHADVTG 555
S ++V GG ++N L++Q A V G
Sbjct: 384 FEGSRIVVIGGGSRNKLWLQLKASVLG 410
>gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase. This model describes
glycerol kinase, a member of the FGGY family of
carbohydrate kinases [Energy metabolism, Other].
Length = 493
Score = 78.8 bits (195), Expect = 2e-15
Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 20/181 (11%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y+L++D GT+S RA + G + I + PKP E +IW SV I +
Sbjct: 2 YILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEAL 61
Query: 63 K--DVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEADQ 117
+ P I +G+ TN + T+ TG N ++W D R S ++
Sbjct: 62 AKAGIKPDDIAAIGI----------TNQRETTVVWDKATGKPLYNAIVWQDRRTASICEE 111
Query: 118 INATKHS--VLDTVGGKISPEMETPKLLWLKKNLPDT--CWRRAGLFFDLPD-FLTWKLT 172
+ A + + + G + P KL WL N+P R L F D +L W LT
Sbjct: 112 LKAEGYGEFIREKTGLPLDPYFSATKLRWLLDNVPGVREAAERGELLFGTIDTWLIWNLT 171
Query: 173 G 173
G
Sbjct: 172 G 172
Score = 65.0 bits (159), Expect = 4e-11
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P F G +P D D +G I GLT +++ + A ++A+A+ TR +++AM
Sbjct: 343 PAFTGLGAPYWDPDARGAIFGLTRGTTKAHIAR---AALEAIAFQTRDVLEAMEKDAGVE 399
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
I+ L V GG+ N L +Q AD+ G V+ P+
Sbjct: 400 -ITKLRVDGGMTNNNLLMQFQADILGVPVVRPK 431
Score = 28.7 bits (65), Expect = 9.2
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 375 PDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVD 434
P F G +P D D +G I GLT +++ + A ++A+A T+DV A K GV+
Sbjct: 343 PAFTGLGAPYWDPDARGAIFGLTRGTTKAHIAR---AALEAIAFQTRDVLEAMEKDAGVE 399
Query: 435 ATC 437
T
Sbjct: 400 ITK 402
>gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family
of carbohydrate kinases. This subfamily includes
glycerol kinases (GK; EC 2.7.1.30) and glycerol
kinase-like proteins from all three kingdoms of living
organisms. Glycerol is an important intermediate of
energy metabolism and it plays fundamental roles in
several vital physiological processes. GKs are involved
in the entry of external glycerol into cellular
metabolism. They catalyze the rate-limiting step in
glycerol metabolism by transferring a phosphate from ATP
to glycerol thus producing glycerol 3-phosphate (G3P) in
the cytoplasm. Human GK deficiency, called
hyperglycerolemia, is an X-linked recessive trait
associated with psychomotor retardation, osteoporosis,
spasticity, esotropia, and bone fractures. Under
different conditions, GKs from different species may
exist in different oligomeric states. The monomer of GKs
is composed of two large domains separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain. The high affinity ATP binding site of GKs is
created only by a substrate-induced conformational
change. Based on sequence similarity, some GK-like
proteins from metazoa, which have lost their GK
enzymatic activity, are also included in this CD.
Members in this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 484
Score = 77.3 bits (191), Expect = 5e-15
Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 24/183 (13%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y+L++D GT+S R + G+V P+P E E+IW +V I +
Sbjct: 1 YILAIDQGTTSTRFIIFDRDGEVVSSHQVEHEQIYPQPGWVEHDPEEIWANVVQCIEEAL 60
Query: 63 K--DVNPAQIKGVGVD---ATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQ 117
K ++P QIK +G+ T VA D TG N ++W D R ++
Sbjct: 61 KKLRISPEQIKAIGITNQRETT--VAWDKE--------TGKPLYNAIVWQDTRTSEIVEE 110
Query: 118 INAT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRA-----GLFFDLPDFLTWK 170
+ A + G ISP KL WL +N+P+ R A LF + +L W
Sbjct: 111 LKADGNADYFREKTGLPISPYFSALKLRWLLENVPEV--REAIEEGTLLFGTIDTWLIWN 168
Query: 171 LTG 173
LTG
Sbjct: 169 LTG 171
Score = 62.6 bits (153), Expect = 3e-10
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P F G +P D D +G I GLT ++ +V A ++A+A+ TR ++DAM
Sbjct: 343 PAFSGLFAPYWDPDARGTILGLTRGTTRAHIV---RAALEAIAFQTRDVLDAMEKDSGIK 399
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
+S L V GGL KN L +Q AD+ G V P+
Sbjct: 400 -LSVLRVDGGLTKNNLLMQFQADILGVPVERPE 431
Score = 29.9 bits (68), Expect = 4.0
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 375 PDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDVNPAQIKGVGVD 434
P F G +P D D +G I GLT ++ +V A ++A+A T+DV A K G+
Sbjct: 343 PAFSGLFAPYWDPDARGTILGLTRGTTRAHIV---RAALEAIAFQTRDVLDAMEKDSGIK 399
>gnl|CDD|223628 COG0554, GlpK, Glycerol kinase [Energy production and conversion].
Length = 499
Score = 75.7 bits (187), Expect = 2e-14
Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 32/215 (14%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRD 60
+Y+L++D GT+S RA + G + IA R P+P E +IW SV +++
Sbjct: 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKE 63
Query: 61 VTK--DVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEA 115
+ P +I +G+ TN + T+ TG N ++W D R
Sbjct: 64 ALAKAGIKPGEIAAIGI----------TNQRETTVVWDKETGKPIYNAIVWQDRRTADIC 113
Query: 116 DQINATKHS--VLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAG---LFFDLPD-FLTW 169
+++ A + + + G + P K+ W+ N+P RA L F D +L W
Sbjct: 114 EELKADGYEERIREKTGLVLDPYFSATKIKWILDNVPG-ARERAEKGELLFGTIDTWLIW 172
Query: 170 KLTG------DETQSLCSLVCKWTYDAYDRRWNED 198
KLTG D + + +++ ++ + W+++
Sbjct: 173 KLTGGKVHVTDYSNASRTML----FNIHSLEWDDE 203
Score = 56.8 bits (138), Expect = 1e-08
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P F G +P D D +G I GLT +++ + AT++++AY TR +++AM
Sbjct: 346 PAFTGLGAPYWDSDARGAIFGLTRGTTKAHIAR---ATLESIAYQTRDVLEAMEKDSGIK 402
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCP 561
++ L V GG ++N +Q AD+ G V P
Sbjct: 403 -LTRLRVDGGASRNNFLMQFQADILGVPVERP 433
>gnl|CDD|198376 cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup 2; members of
the FGGY family of carbohydrate kinases. This subgroup
is predominantly composed of bacterial D-xylulose
kinases (XK, also known as xylulokinase; EC 2.7.1.17).
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. EcXK exists as a dimer. Each monomer consists
of two large domains separated by an open cleft that
forms an active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
The presence of Mg2+ or Mn2+ might be required for
catalytic activity. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 490
Score = 74.7 bits (184), Expect = 3e-14
Identities = 69/276 (25%), Positives = 111/276 (40%), Gaps = 44/276 (15%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVR----PIALWCPKPQLYEQSSEDIWNSVCLAI 58
L D+G+SS++AALV S +V + + P+P EQ E W+ C A
Sbjct: 1 LFLGYDIGSSSIKAALVDAETGKSLASVSYPEQEMEILSPQPGWAEQDPEIWWDYTCAAT 60
Query: 59 RDVTK--DVNPAQIKGVGVDATC-SLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVS-E 114
+ + + + I+ +G+ LV +D L R ++W D RAVS
Sbjct: 61 KQLINQGKEDLSNIQAIGISYQMHGLVLVDKQGNVL---------RPAIIWCDSRAVSIG 111
Query: 115 ADQINATKHS-----VLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLP-DFLT 168
+L++ G KL W+K+N P+ R A + LP D++
Sbjct: 112 EKAFQELGEDFCLSHLLNSPG-----NFTASKLAWVKENEPEVFDRIAKIM--LPGDYIA 164
Query: 169 WKLTGD--ETQSLCSLVCKWTYDAYD-RRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQ 225
KLTG+ T+S S W + + +Y L ++ I G
Sbjct: 165 MKLTGEVTTTKSGLSEGMLWDFKKNEVAVELLEYL------GLDRSLIPDIVPNFSEQGT 218
Query: 226 PIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALAL 261
V++E+A LGL+ G P++ D AL+L
Sbjct: 219 -----VTSEIAAELGLSEGIPITYRAGDQPNNALSL 249
>gnl|CDD|198361 cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup is composed of mostly bacterial
and archaeal glycerol kinases (GK), including the well
characterized proteins from Escherichia coli (EcGK),
Thermococcus kodakaraensis (TkGK), and Enterococcus
casseliflavus (EnGK). GKs contain two large domains
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain. The high affinity ATP binding
site of EcGK is created only by a substrate-induced
conformational change, which is initiated by
protein-protein interactions through complex formation
with enzyme IIAGlc (also known as IIIGlc), the
glucose-specific phosphocarrier protein of the
phosphotransferase system (PTS). EcGK exists in a
dimer-tetramer equilibrium. IIAGlc binds to both EcGK
dimer and tetramer, and inhibits the uptake and
subsequent metabolism of glycerol and maltose. Another
well-known allosteric regulator of EcGK is fructose
1,6-bisphosphate (FBP), which binds to the EcGK tetramer
and plays an essential role in the stabilization of the
inactive tetrameric form. EcGK requires Mg2+ for its
enzymatic activity. Members in this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 486
Score = 70.2 bits (173), Expect = 8e-13
Identities = 51/184 (27%), Positives = 77/184 (41%), Gaps = 26/184 (14%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y+L++D GT+S RA L G + +A R PKP E E+IW S R+
Sbjct: 1 YILAIDQGTTSSRAILFDHDGNIVAVAQREFTQIYPKPGWVEHDPEEIWESQLAVAREAL 60
Query: 63 K--DVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEADQ 117
+ + I +G+ TN + T+ TG N ++W D R ++
Sbjct: 61 AKAGIRASDIAAIGI----------TNQRETTVVWDRETGKPVYNAIVWQDRRTADICEE 110
Query: 118 INATKHSVLDTVGGK----ISPEMETPKLLWLKKNLPDTCWRRAG---LFFDLPD-FLTW 169
+ A H + + K + P K+ W+ N+P RA L F D +L W
Sbjct: 111 LKAEGHE--EMIREKTGLVLDPYFSATKIRWILDNVPGA-RERAERGELAFGTIDSWLIW 167
Query: 170 KLTG 173
KLTG
Sbjct: 168 KLTG 171
Score = 59.0 bits (144), Expect = 3e-09
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 481 DVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGL 540
D D +G I GLT ++ + A ++++AY TR +++AM A P + L V GG
Sbjct: 352 DPDARGAIFGLTRGTTRAHIAR---AALESIAYQTRDLLEAMEADSGIP-LKELRVDGGA 407
Query: 541 AKNPLYVQTHADVTGCNVLCPQ 562
+ N +Q AD+ G V P+
Sbjct: 408 SANDFLMQFQADILGVPVERPK 429
>gnl|CDD|198363 cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a group of
putative bacterial glycerol kinases (GK), which may be
coded by the GK-like gene, GK2. Sequence comparison
shows members in this CD are homologs of Escherichia
coli GK. They retain all functionally important
residues, and may catalyze the Mg-ATP dependent
phosphorylation of glycerol to yield glycerol
3-phosphate (G3P). GKs belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 484
Score = 69.0 bits (169), Expect = 2e-12
Identities = 71/280 (25%), Positives = 105/280 (37%), Gaps = 41/280 (14%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
++L++D GT++ +A LV G V P+ + P+P EQ +E IW +V AI D
Sbjct: 1 FILAIDEGTTNAKAVLVDRDGTVVASGSAPVGIQYPQPGWVEQDAEAIWAAVQQAIADCL 60
Query: 63 KDVNPAQIKGVGV-DATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINAT 121
V A++ + + + S+V D TG VL W R + + A
Sbjct: 61 AGVLAAEVAAIAISNQRESVVIWDRQ--------TGAPLGPVLSWQCRRTAAACAALRAE 112
Query: 122 KHS--VLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFF---DLPDFLTWKLTGDET 176
H V G I P K+ WL + D R A + +L W LTG
Sbjct: 113 GHEPMVAARTGLPIDPMFSASKMRWLLDRVDDGPARAAQGRLCLGTVDSWLLWNLTGGA- 171
Query: 177 QSLCSLVCKWT-------YDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGH 229
+ D + +W+ + G+ RA V GH
Sbjct: 172 ----VFATDASNAARTQLLDLHGGQWDPQLLDLFGIP-------RAALPDVLASAGDFGH 220
Query: 230 GVSTEVARALGLNPGTPVSVSMI-DAHAGALALLATSAPG 268
GL G P+ ++MI D+HA AL APG
Sbjct: 221 -----TRGLGGLPDGVPI-LAMIGDSHA-ALFGHGAFAPG 253
Score = 42.4 bits (100), Expect = 6e-04
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P G +P D D +G+I GLTL + L A ++++A+ + +AM A P
Sbjct: 338 PALTGLGAPWWDRDARGLISGLTLGTGRAHLAR---AALESIAFQIADVFEAMQQAAGGP 394
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTG 555
+ L V GG +N +Q AD+ G
Sbjct: 395 -LERLSVDGGATRNRFLMQLQADLLG 419
>gnl|CDD|212664 cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kinase 1 and 3-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a group of
metazoan glycerol kinases (GKs), coded by X
chromosome-linked GK genes, and glycerol kinase
(GK)-like proteins, coded by autosomal testis-specific
GK-like genes (GK-like genes, GK1 and GK3). Sequence
comparison shows that metazoan GKs and GK-like proteins
in this family are closely related to the bacterial GKs,
which catalyze the Mg-ATP dependent phosphorylation of
glycerol to yield glycerol 3-phosphate (G3P). The
metazoan GKs do have GK enzymatic activity. However, the
GK-like metazoan proteins do not exhibit GK activity and
their biological functions are not yet clear. Some of
them lack important functional residues involved in the
binding of ADP and Mg2+, which may result in the loss of
GK catalytic function. Others that have conserved
catalytic residues have lost their GK activity as well;
the reason remains unclear. It has been suggested the
conserved catalytic residues might facilitate them
performing a distinct function. GKs belong to the FGGY
family of carbohydrate kinases, the monomers of which
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 504
Score = 68.1 bits (167), Expect = 5e-12
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 463 TADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAM 522
+ D + P F G +P D +G+ICGLT T+ + A ++A+ + TR I++AM
Sbjct: 346 SGDVYFVPAFSGLYAPYWRKDARGIICGLT---QFTTKNHIARAALEAVCFQTREILEAM 402
Query: 523 HAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
+ P +S L V GG+ N L +Q AD+ G V+ P
Sbjct: 403 NKDCGIP-LSKLQVDGGMTSNNLLMQLQADILGIPVVRPS 441
Score = 53.1 bits (128), Expect = 2e-07
Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 41/192 (21%)
Query: 6 SVDVGTSSVRAALVSTRG-------KVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAI 58
++D GTSS R + + + +V + P W EQ ++I NSV I
Sbjct: 5 AIDQGTSSTRFLVFNAKTAELLSSHQVEIKQIFPKEGWV------EQDPKEILNSVYECI 58
Query: 59 RDVTK-----DVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHR 110
K +++ + IK +G+ TN + T+ TG+ N ++W+D R
Sbjct: 59 EKTCKKLKELNIDVSDIKAIGI----------TNQRETTVVWDKYTGEPLYNAIVWLDIR 108
Query: 111 AVSEADQI-----NATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCW----RRAGLFF 161
S D++ + K+ + G IS KL WL N+P+ +R LF
Sbjct: 109 TQSTVDKLLAKIPDKNKNYLKSICGLPISTYFSAVKLRWLLDNVPEVRKAVEEKRC-LFG 167
Query: 162 DLPDFLTWKLTG 173
+ +L W LTG
Sbjct: 168 TVDSWLIWNLTG 179
>gnl|CDD|184987 PRK15027, PRK15027, xylulokinase; Provisional.
Length = 484
Score = 64.2 bits (156), Expect = 7e-11
Identities = 99/438 (22%), Positives = 163/438 (37%), Gaps = 56/438 (12%)
Query: 5 LSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKD 64
+ +D+GTS V+ L++ +G+V + + P P EQ E W + A++ +
Sbjct: 3 IGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQ 62
Query: 65 VNPAQIKGVGVDATC-SLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINATKH 123
+ +K +G+ LD + L R +LW D R E + A
Sbjct: 63 HSLQDVKALGIAGQMHGATLLDAQQRVL---------RPAILWNDGRCAQECALLEARVP 113
Query: 124 SVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLP-DFLTWKLTGDETQSLCSL 182
G + P PKLLW++++ P+ + + LP D+L ++TG+ +
Sbjct: 114 QSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVL--LPKDYLRLRMTGEFASDMSDA 171
Query: 183 VCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVARALGLN 242
D R W++ + L ++ A+ G I + EVA+A G+
Sbjct: 172 AGTMWLDVAKRDWSDVMLQAC---HLSRDQMPALYE-----GSEITGALLPEVAKAWGM- 222
Query: 243 PGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQVPGVWG 302
PV D AGA+ + G+ + + L L GTS + A+S + P
Sbjct: 223 ATVPVVAGGGDNAAGAVGV------GMVDANQAMLSL--GTSGVYFAVSEGFLSKPESAV 274
Query: 303 PYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQ 362
+ LP L S + LD KL P + I
Sbjct: 275 HSFCHALPQRWHLMSVMLSAASCLDW-----------AAKLTGLSNVPAL------IAAA 317
Query: 363 HSTELTADFHVW--PDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATI-QALA-- 417
+ +A+ VW P G R+P + KG+ GLT L L + ALA
Sbjct: 318 QQADESAE-PVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADG 376
Query: 418 -DVTKD--VNPAQIKGVG 432
DV + P + +G
Sbjct: 377 MDVVHACGIKPQSVTLIG 394
Score = 40.7 bits (95), Expect = 0.002
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 468 VW--PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAA 525
VW P G R+P + KG+ GLT L A ++ + Y MD +HA
Sbjct: 327 VWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELAR---AVLEGVGYALADGMDVVHAC 383
Query: 526 GKTPAISTLLVSGGLAKNPLYVQTHADVTG 555
G P TL+ GG A++ + Q AD++G
Sbjct: 384 GIKPQSVTLI--GGGARSEYWRQMLADISG 411
>gnl|CDD|198362 cd07789, FGGY_CsGK_like, Cellulomonas sp. glycerol kinase-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a small group of
bacterial glycerol kinases (GK) with similarity to
Cellulomonas sp. glycerol kinase (CsGK). CsGK might
exist as a dimer. Its monomer is composed of two large
domains separated by a deep cleft that forms the active
site. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain. The regulation
of the catalytic activity of this group has not yet been
examined. Members in this subgroup belong to the FGGY
family of carbohydrate kinases.
Length = 495
Score = 61.7 bits (150), Expect = 5e-10
Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 20/181 (11%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRD-- 60
Y+ ++D GT+S R + G++ +A + P+P E E+IW + I
Sbjct: 1 YVAAIDQGTTSTRCIVFDHHGRIVSVAQKEHRQIFPRPGWVEHDPEEIWENTRRVISGAL 60
Query: 61 VTKDVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEADQ 117
+ P I VG+ TN + T+ TG N ++W D R +
Sbjct: 61 AKAGLTPEDIAAVGI----------TNQRETTVVWDRATGRPVYNAIVWQDTRTDEICRE 110
Query: 118 INAT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWR--RAGLFFDLPD-FLTWKLT 172
+ A + G ++ PK+ W+ N+P R + L F D +L W LT
Sbjct: 111 LAADEGQQRFRARTGLPLATYFSGPKIRWILDNVPGARERAEKGDLLFGTMDTWLLWNLT 170
Query: 173 G 173
G
Sbjct: 171 G 171
Score = 47.4 bits (113), Expect = 1e-05
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 12/99 (12%)
Query: 467 HVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVT---LYLATIQALAYGTRHIMDAMH 523
+ P F G +P D +G+I GLT V + A ++A A+ TR ++DAM+
Sbjct: 342 YFVPAFSGLFAPYWRSDARGVIVGLT------RYVNKGHIARAVLEATAFQTREVVDAMN 395
Query: 524 A-AGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCP 561
A +G A+ +L V GG+ N L +Q AD+ G V+ P
Sbjct: 396 ADSGV--ALESLRVDGGMVANELLMQFQADILGVPVVRP 432
>gnl|CDD|240348 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional.
Length = 504
Score = 61.5 bits (150), Expect = 6e-10
Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 23/186 (12%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRD 60
M+Y+ S+D GT+S R + +G V P P P E E+I +V + +
Sbjct: 1 MKYIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNE 60
Query: 61 VTKDVNP----AQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVS 113
K + +IK +G+ TN + + TG N ++W+D R
Sbjct: 61 AIKKLREKGPSFKIKAIGI----------TNQRETVVAWDKVTGKPLYNAIVWLDTRTYD 110
Query: 114 EADQINATKHSVLD---TVGGKISPEMETPKLLWLKKNLP---DTCWRRAGLFFDLPDFL 167
+++ G IS K+ W+ +N+P D LF + +L
Sbjct: 111 IVNELTKKYGGSNFFQKITGLPISTYFSAFKIRWMLENVPAVKDAVKEGTLLFGTIDTWL 170
Query: 168 TWKLTG 173
W LTG
Sbjct: 171 IWNLTG 176
Score = 50.0 bits (120), Expect = 2e-06
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P F G +P D +G I G+TL ++ +V A ++A+A T ++++M
Sbjct: 350 PAFSGLFAPYWRPDARGTIVGMTLKTTRAHIVR---AALEAIALQTNDVIESMEKDAGIE 406
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQEK 564
+++L V GGL KN L +Q AD+ G +++ P+
Sbjct: 407 -LNSLRVDGGLTKNKLLMQFQADILGKDIVVPEMA 440
>gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a group of
metazoan putative glycerol kinases (GK), which may be
coded by the GK-like gene, GK5. Sequence comparison
shows members of this group are homologs of bacterial
GKs, and they retain all functionally important
residues. However, GK-like proteins in this family do
not have detectable GK activity. The reason remains
unclear. It has been suggested tha the conserved
catalytic residues might facilitate them performing a
distinct function. GKs belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 504
Score = 61.2 bits (149), Expect = 8e-10
Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 44/226 (19%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y+L++DVGT+++R + + +V + I L P+P E + +W + I++
Sbjct: 1 YVLALDVGTTTIRCFIYDRQAEVVGSSYDKIELLYPEPGYVEIDPDKLWTQIVGVIKEAV 60
Query: 63 KDVN--PAQIKGVGVDAT-CSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQIN 119
KD N QI G+G+ S + + + TG N + W D RA + N
Sbjct: 61 KDANLTAKQIAGLGISTQRGSFLTWNKS--------TGKPYHNFITWKDLRADELVKEWN 112
Query: 120 A-----------------TKH------SVLDTVGGKISPEMETPKLLWLKKNLPD---TC 153
T+ SVL K + T +LLW+ +N P+
Sbjct: 113 NSLLMKAIRVASKVLHLLTRSKRFLAASVL-----KFMNQHVTLRLLWVLQNNPELKKAL 167
Query: 154 WRRAGLFFDLPDFLTWKLTGDE--TQSLCSLVCKWTYDAYDRRWNE 197
LF + +L +KLTG + + + +D + W+
Sbjct: 168 KEGNVLFGTIDTWLLYKLTGGKEHVTDVSNASATGLFDPFTMEWSS 213
Score = 39.2 bits (92), Expect = 0.005
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P F G + P+ D GL +++ LV A ++++A+ + + + + P
Sbjct: 356 PAFSGLQPPINDPRACAGFIGLKPSTTKEHLVR---ALLESIAFRIKQLYETIKKETGQP 412
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNV 558
I + V GG++ N Q AD+TG V
Sbjct: 413 -IKKIRVDGGVSNNDFICQLLADLTGLPV 440
>gnl|CDD|198378 cd10427, FGGY_GK_1, Uncharacterized subgroup; belongs to the
glycerol kinases subfamily of the FGGY family of
carbohydrate kinases. This subgroup contains
uncharacterized bacterial proteins belonging to the
glycerol kinase subfamily of the FGGY family of
carbohydrate kinases. The glycerol kinase subfamily
includes glycerol kinases (GK; EC 2.7.1.30), and
glycerol kinase-like proteins from all three kingdoms of
living organisms. Glycerol is an important intermediate
of energy metabolism and it plays fundamental roles in
several vital physiological processes. GKs are involved
in the entry of external glycerol into cellular
metabolism. They catalyze the rate-limiting step in
glycerol metabolism by transferring a phosphate from ATP
to glycerol thus producing glycerol 3-phosphate (G3P) in
the cytoplasm. Under different conditions, GKs from
different species may exist in different oligomeric
states. The monomer of GKs is composed of two large
domains separated by a deep cleft that forms the active
site. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain.
Length = 487
Score = 59.6 bits (145), Expect = 2e-09
Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 20/183 (10%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y+L++D T +A L +G++ A + P+ E E+I+ + A++D+
Sbjct: 1 YILAIDQSTQGTKALLFDEKGELLARADKSHRQIYPENGWVEHDPEEIYENTLQAVKDLL 60
Query: 63 K--DVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEADQ 117
+ ++PA+I+G+G+ TN + T+ TG N ++W R + ++
Sbjct: 61 EEFGIDPAEIEGLGI----------TNQRETTVAWDKRTGKPLYNAIVWQCQRGKAICER 110
Query: 118 INATKHSVL--DTVGGKISPEMETPKLLWLKKNLPDTCWRRAG--LFFDLPD-FLTWKLT 172
+ ++ L G KI P K+ WL +N+ + L F D +L +KLT
Sbjct: 111 LKEEGYAELIKQKTGLKIDPYFSASKMAWLLENVEGVREAASKGDLAFGTIDSWLIYKLT 170
Query: 173 GDE 175
+
Sbjct: 171 NGK 173
Score = 48.5 bits (116), Expect = 6e-06
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P F G +P D K I G+T + + LV A ++++AY ++DAM
Sbjct: 342 PAFTGLGAPYWKSDAKAAIVGMTRTTGKAELVR---AALESIAYQINDVIDAMEEDSGIE 398
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCP 561
IS L V GG +N +Q AD+ V
Sbjct: 399 -ISELRVDGGPTRNRYLMQFQADILNAPVKVS 429
>gnl|CDD|234594 PRK00047, glpK, glycerol kinase; Provisional.
Length = 498
Score = 52.9 bits (128), Expect = 3e-07
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 20/182 (10%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61
+Y+L++D GT+S RA + G + +A + P+P E +IW S I +
Sbjct: 5 KYILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEA 64
Query: 62 --TKDVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEAD 116
++P QI +G+ TN + T+ TG N ++W D R +
Sbjct: 65 LAKAGISPDQIAAIGI----------TNQRETTVVWDKETGRPIYNAIVWQDRRTADICE 114
Query: 117 QINATKHS--VLDTVGGKISPEMETPKLLWLKKNLPDTCWR-RAG-LFFDLPD-FLTWKL 171
++ + + + G I P K+ W+ N+ R G L F D +L WKL
Sbjct: 115 ELKRDGYEDYIREKTGLVIDPYFSGTKIKWILDNVEGARERAEKGELLFGTIDTWLVWKL 174
Query: 172 TG 173
TG
Sbjct: 175 TG 176
Score = 50.2 bits (121), Expect = 2e-06
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 467 HVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHA-A 525
+V P F G +P D D +G I GLT +++ ++ AT++++AY TR ++DAM A +
Sbjct: 344 YVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHIIR---ATLESIAYQTRDVLDAMQADS 400
Query: 526 GKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
G + L V GG N +Q AD+ G V P
Sbjct: 401 GI--RLKELRVDGGAVANNFLMQFQADILGVPVERPV 435
>gnl|CDD|198368 cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and related proteins;
belongs to the FGGY family of carbohydrate kinases.
This subgroup includes Arabidopsis NHO1 (also known as
NONHOST1, or noh-host resistant 1) and other putative
plant glycerol kinases, which share strong homology with
glycerol kinases from bacteria, fungi, and animals.
Nonhost resistance of plants refers to the phenomenon
observed when all members of a plant species are
typically resistant to a specific parasite. NHO1 is
required for nonspecific resistance to nonhost
Pseudomonas bacteria, it is also required for resistance
to the fungal pathogen Botrytis cinerea. This subgroup
belongs to the FGGY family of carbohydrate kinases, the
monomers of which contain two large domains, which are
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain.
Length = 503
Score = 52.3 bits (125), Expect = 4e-07
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 22/185 (11%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y+ S+D GT+S R + T KV P+ E +I +V +
Sbjct: 1 YIGSIDQGTTSTRFIIYDTAAKVVASHQVEFTQIYPQAGWVEHDPMEILETVKKCME--- 57
Query: 63 KDVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVS-----E 114
+ A+ KG+ V + + TN + T+ TG N ++WMD R S E
Sbjct: 58 GALAKAKAKGLDVLDGLKAIGI-TNQRETTVVWSRSTGLPLYNAIVWMDARTSSICRRLE 116
Query: 115 ADQINATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAG------LFFDLPDFLT 168
+ +H V +T G IS KLLWL +++ + +A LF + +L
Sbjct: 117 KELPEGGRHFV-ETCGLPISTYFSATKLLWLMEHVDEV---KAAVKSGDALFGTIDTWLI 172
Query: 169 WKLTG 173
W LTG
Sbjct: 173 WNLTG 177
Score = 37.3 bits (86), Expect = 0.024
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 459 STELTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHI 518
+ T + P F+G +P D +G+ G+T +++ + A ++++ + + +
Sbjct: 342 TVNNTGGVYFVPAFNGLFAPWWRDDARGVCIGITRYTNKAHIAR---AVLESMCFQVKEV 398
Query: 519 MDAMHAAGKTPAIST------LLVSGGLAKNPLYVQTHADVTGCNVLCP 561
+ +M A +T L V GG N L +Q AD+ G V+ P
Sbjct: 399 LTSMKADAGNIEANTVGGEFLLRVDGGATVNNLLMQIQADLMGSPVVRP 447
>gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase.
Length = 512
Score = 49.3 bits (118), Expect = 4e-06
Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 20/184 (10%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
++ ++D GT+S R + + P+ E +I SV I
Sbjct: 1 FVGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIA--- 57
Query: 63 KDVNPAQIKGVGVDATCSLVALDTNHQPLTIS---PTGDDSRNVLLWMDHRAVSEADQIN 119
K + A KG VD+ + + TN + T++ TG N ++WMD R S ++
Sbjct: 58 KALEKAAAKGHNVDSGLKAIGI-TNQRETTVAWSKSTGRPLYNAIVWMDSRTSSICRRLE 116
Query: 120 ATKHSV----LDTVGGKISPEMETPKLLWLKKNLPDTCWRRAG------LFFDLPDFLTW 169
++T G IS KLLWL +N+ + LF + +L W
Sbjct: 117 KELSGGRKHFVETCGLPISTYFSATKLLWLLENVDAV---KEAVKSGDALFGTIDSWLIW 173
Query: 170 KLTG 173
LTG
Sbjct: 174 NLTG 177
Score = 43.9 bits (104), Expect = 2e-04
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P F G +P D +G+ G+T +++ + A ++++ + + ++DAM
Sbjct: 351 PAFSGLFAPRWRDDARGVCVGITRFTNKAHIAR---AVLESMCFQVKDVLDAMRKDAGEE 407
Query: 530 A----ISTLLVSGGLAKNPLYVQTHADVTGCNVLCP 561
+ L V GG N L +Q AD+ G V+ P
Sbjct: 408 KSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRP 443
>gnl|CDD|198367 cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisiae Gut1p and
related proteins; belongs to the FGGY family of
carbohydrate kinases. This subgroup corresponds to a
small group of fungal glycerol kinases (GK), including
Saccharomyces cerevisiae Gut1p/YHL032Cp, which
phosphorylates glycerol to glycerol-3-phosphate in the
cytosol. Glycerol utilization has been considered as the
sole source of carbon and energy in S. cerevisiae, and
is mediated by glycerol kinase and glycerol 3-phosphate
dehydrogenase, which is encoded by the GUT2 gene.
Members in this family show high similarity to their
prokaryotic and eukaryotic homologs. GKs belong to the
FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 496
Score = 47.1 bits (112), Expect = 2e-05
Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 29/189 (15%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIAL--WCPKPQLYEQSSEDIWNSVCLAIR 59
+ S+D GT+S R L + G+ P+A I P P +E E+I +SV I
Sbjct: 2 PLVGSIDQGTTSTRFILFNRDGQ--PVASHQIEFSQIYPHPGWHEHDPEEIVSSVVQCIA 59
Query: 60 DVTKDV-----NPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRA 111
K + + +K +G+ TN + T+ TG N ++W D R
Sbjct: 60 SALKSLETSGFSKYDVKVIGI----------TNQRETTVVWDRETGKPLYNAIVWNDTRT 109
Query: 112 VSEADQINATKHSVLDTV----GGKISPEMETPKLLWLKKNLPDT--CWRRAGLFFDLPD 165
S ++ + + + G +S + KL W+ N+P+ + L F D
Sbjct: 110 TSTVRELESKLKKGAEALREICGLPLSTYFSSVKLRWMLDNVPEVKKAYDDGDLAFGTVD 169
Query: 166 -FLTWKLTG 173
+L + LTG
Sbjct: 170 SWLIYNLTG 178
Score = 45.1 bits (107), Expect = 6e-05
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHA-AGKT 528
F G +P D D +G I G+T T+ + A ++A+ + TR I+DAM +G
Sbjct: 353 TAFSGLFAPYWDDDARGTIFGIT---QYTTKSHIARAALEAVCFQTRAILDAMSKDSGS- 408
Query: 529 PAISTLLVSGGLAKNPLYVQTHADVTGCNVLCP 561
+ L V GG++ + + +Q AD+ G V P
Sbjct: 409 -PLKALAVDGGMSNSDVAMQIQADILGIPVERP 440
>gnl|CDD|198350 cd07772, FGGY_NaCK_like, Novosphingobium aromaticivorans
carbohydrate kinase-like proteins; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of uncharacterized bacterial
proteins with similarity to carbohydrate kinase from
Novosphingobium aromaticivorans (NaCK). These proteins
may catalyze the transfer of a phosphate group from ATP
to their carbohydrate substrates. They belong to the
FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 419
Score = 46.6 bits (111), Expect = 3e-05
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 12/127 (9%)
Query: 142 LLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYFE 201
L WLK+ PD + RA P + W+LTG + SL C + WN
Sbjct: 129 LYWLKETKPDA-FARARYILHYPQYWAWRLTGVAASEVTSLGC------HTDLWN---PR 178
Query: 202 KIGLGDL-KQNGWRAIGNTVKNPGQPIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALA 260
+ L GW + + G +G + +AR GL+P PV + D++A L
Sbjct: 179 RGDFSSLVDAEGWAGLMPPFRPAGDVLGP-IRPALARRTGLSPDIPVGCGIHDSNAALLP 237
Query: 261 LLATSAP 267
L P
Sbjct: 238 YLRLFLP 244
Score = 29.2 bits (66), Expect = 6.3
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 13/79 (16%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSE-TSLVTLYLATIQALAYGTRHIMDAMHAAGKT 528
P F P + + E + LYLA + T +D + AAG
Sbjct: 324 PSFASGSGPFPGRAGRWRNHPRAPTAGERDAAALLYLALM------TAECLDLLGAAGP- 376
Query: 529 PAISTLLVSGGLAKNPLYV 547
++V G A+N LY+
Sbjct: 377 -----VIVDGPFARNRLYL 390
>gnl|CDD|198351 cd07773, FGGY_FK, L-fuculose kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of bacterial L-fuculose kinases (FK, also known
as fuculokinase, EC 2.7.1.51), which catalyze the
ATP-dependent phosphorylation of L-fuculose to produce
L-fuculose-1-phosphate and ADP. The presence of Mg2+ or
Mn2+ is required for enzymatic activity. FKs belong to
the FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 448
Score = 44.8 bits (106), Expect = 9e-05
Identities = 64/260 (24%), Positives = 98/260 (37%), Gaps = 43/260 (16%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIA--LWCPKPQLYEQSSEDIWNSVCLAIRD 60
+L +D G ++VRA V+ +G++ A P A + ++IW +
Sbjct: 1 VVLVLDCGATNVRAIAVNEQGQIVASASLPNATKQGIENNDYHIWDFDEIWQKLVECATQ 60
Query: 61 VTKDVNPAQIKGV-----GVDATCSLVALDTNHQPL--TISPTGDDSRNVLLWMDHRAVS 113
V +N QI + GVD +D L IS W R
Sbjct: 61 VLSQLNAKQIVAITVTTFGVDGA----PVDKQGNQLYPIIS-----------WKCPRTAP 105
Query: 114 EADQI-NATKHSVLDTVGGKISPEMETP-KLLWLKKNLPDTCWRRAGLFFDLPDFLTWKL 171
I N L + G + T KL+WLK+N P + F + LT +L
Sbjct: 106 VMKNIENEIDRLSLYQINGVGAYSFNTLYKLVWLKENHPQL-LEKMHKFVFISSMLTHRL 164
Query: 172 TG----DETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPI 227
TG D T + S++ D W+ +GL R + + + G+ I
Sbjct: 165 TGEFTTDRTMAGTSMMT----DLTSGNWSPSILAYLGLS-------RELFPPLVDAGEKI 213
Query: 228 GHGVSTEVARALGLNPGTPV 247
G ++TE A+ LGL G PV
Sbjct: 214 GL-LTTEAAQLLGLPAGIPV 232
Score = 32.8 bits (75), Expect = 0.51
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
PDF L D G I GL+L ++ + Y A ++ L + +D + G+
Sbjct: 343 PDF------LQLGDGNGSIEGLSLHTTRGHI---YRAALEGLTNQLKRNLDYLEQVGQFK 393
Query: 530 AISTLLVSGGLAKNPLYVQTHADV 553
A +LV GG +KN L+ Q AD
Sbjct: 394 AKPLILVGGG-SKNTLWNQIRADA 416
>gnl|CDD|182383 PRK10331, PRK10331, L-fuculokinase; Provisional.
Length = 470
Score = 41.6 bits (98), Expect = 8e-04
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 141 KLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTG----DETQSLCSLVCKWTYDAYDRRWN 196
KL+WLK+N P +A + + + +LTG D T + S + D R ++
Sbjct: 137 KLVWLKENHPQL-LEQAHAWLFISSLINHRLTGEFTTDITMAGTSQML----DIQQRDFS 191
Query: 197 EDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVARALGLNPGTPV 247
+ + GL R + + G+ IG + A LGL G PV
Sbjct: 192 PEILQATGLS-------RRLFPRLVEAGEQIGT-LQPSAAALLGLPVGIPV 234
Score = 40.8 bits (96), Expect = 0.002
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 484 MKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKN 543
G+TL+++ Y A ++ L + + + G A LLV GG ++N
Sbjct: 347 QNAGWQGVTLNTTRGHF---YRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGG-SRN 402
Query: 544 PLYVQTHADVTGCNV 558
L+ Q A++ +
Sbjct: 403 ALWNQIKANMLDIPI 417
>gnl|CDD|198369 cd07798, FGGY_AI-2K_like, Autoinducer-2 kinase-like proteins;
belongs to the FGGY family of carbohydrate kinases.
This subgroup consists of uncharacterized hypothetical
bacterial proteins with similarity to bacterial
autoinducer-2 (AI-2) kinases, which catalyzes the
phosphorylation of intracellular AI-2 to phospho-AI-2,
leading to the inactivation of lsrR, the repressor of
the lsr operon. Members of this subgroup belong to the
FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 437
Score = 39.9 bits (93), Expect = 0.003
Identities = 61/290 (21%), Positives = 108/290 (37%), Gaps = 44/290 (15%)
Query: 5 LSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQ----SSEDIWNSVCLAIRD 60
L D+GT + R A+VS G V I I + +LY S E++W + ++
Sbjct: 3 LVFDIGTGNARVAVVSADGTVWGIEREDIEYY--TDKLYPDARYFSPEELWKQLLGGAKE 60
Query: 61 VTKDVNPAQIKGV-GVDATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQIN 119
+ K+ + G+ +V ++ + P +D+R I
Sbjct: 61 LLKESPEIPVIGITSTSQRQGIVLINKVGKAFLGLPN----------IDNRGREWEAGIE 110
Query: 120 ATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTG----DE 175
+ + + G + KL+ LKK P W + D++T L+G +
Sbjct: 111 -DREEIYEKTGRLPTALFSAAKLMGLKKRQPSL-WAGIAKITSISDWVTEMLSGILVYEP 168
Query: 176 TQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEV 235
+Q+ +L+ +D + W+E G+ I + G +G + E+
Sbjct: 169 SQACETLL----FDVESKEWSERLCGIFGIS-------MDILPELVRAGTSLGK-IKKEM 216
Query: 236 ARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTST 285
A LGL+ V D LAL + A DI ++ GT+T
Sbjct: 217 ADELGLSEDAEVIAGGGDTQ---LALKSVGAG--VGDI----VIVSGTTT 257
>gnl|CDD|198349 cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial L-rhamnulose kinases
(RhuK, also known as rhamnulokinase; EC 2.7.1.5), which
are encoded by the rhaB gene and catalyze the
ATP-dependent phosphorylation of L-rhamnulose to produce
L-rhamnulose-1-phosphate and ADP. Some uncharacterized
homologous sequences are also included in this
subfamily. The prototypical member of this subfamily is
Escherichia coli RhuK, which exists as a monomer
composed of two large domains. The ATP binding site is
located in the cleft between the two domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of divalent Mg2+ or Mn2+
is required for catalysis. Although an intramolecular
disulfide bridge is present in Rhuk, disulfide formation
is not important to the regulation of RhuK enzymatic
activity. Members of this subfamily belong to the FGGY
family of carbohydrate kinases.
Length = 440
Score = 39.4 bits (93), Expect = 0.004
Identities = 38/149 (25%), Positives = 57/149 (38%), Gaps = 31/149 (20%)
Query: 142 LLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQSLCSLVCKWT-------YDAYDRR 194
L LKK P+ +A +PD L + LTG V ++T D R
Sbjct: 134 LYALKKEGPE-LLEKADKLLMIPDLLNYLLTG-------VKVNEYTNASTTQLLDPRTRD 185
Query: 195 WNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVARALGLNPGTPVSVSMIDA 254
W+ + EK+G+ + + PG +G + EVA LG + V + +
Sbjct: 186 WDTELLEKLGIP-------EELFPPLVEPGTVLGP-LKPEVAEELGGK---DIPVIAVAS 234
Query: 255 HAGALALLATSAPGIPEDIDSKLGLICGT 283
H A A+ A P ED + GT
Sbjct: 235 HDTASAVAAV--PAEGED---FAYISSGT 258
Score = 30.9 bits (71), Expect = 2.0
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 510 ALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVL-CPQE 563
AL Y R + + GK I + + GG ++N L Q AD TG V+ P E
Sbjct: 379 ALKYR-RTLEELEELTGKK--IEVIHIVGGGSRNELLNQLTADATGIPVVAGPVE 430
>gnl|CDD|198366 cd07794, FGGY_GK_like_proteobact, Proteobacterial glycerol
kinase-like proteins; belongs to the FGGY family of
carbohydrate kinases. This subgroup corresponds to a
small group of proteobacterial glycerol kinase (GK)-like
proteins, including the glycerol kinase from Pseudomonas
aeruginosa. Most bacteria, such as Escherichia coli,
take up glycerol passively by facilitated diffusion. In
contrast, P. aeruginosa may also utilize a binding
protein-dependent active transport system to mediate
glycerol transportation. The glycerol kinase
subsequently phosphorylates the intracellular glycerol
to glycerol 3-phosphate (G3P). GKs belong to the FGGY
family of carbohydrate kinases, the monomers of which
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 470
Score = 38.3 bits (89), Expect = 0.011
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P G P D G+ G++L ++ + A ++ +A + ++ AM G P
Sbjct: 326 PALSGLACPHWDRSAAGLWLGMSLATTRQDMCQ---ALLEGVAMRSAEVIYAM--DGVRP 380
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563
L + GGL +NP + Q ADV ++ P
Sbjct: 381 VGDRLSIDGGLTRNPYFCQFLADVLQREIVTPSF 414
>gnl|CDD|131676 TIGR02628, fuculo_kin_coli, L-fuculokinase. Members of this family
are L-fuculokinase, from the clade that includes the
L-fuculokinase of Escherichia coli. This enzyme
catalyzes the second step in fucose catabolism. This
family belongs to FGGY family of carbohydrate kinases
(pfam02782, pfam00370). It is encoded by the kinase (K)
gene of the fucose (fuc) operon [Energy metabolism,
Sugars].
Length = 465
Score = 36.4 bits (84), Expect = 0.035
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 141 KLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYF 200
KL+WLK++ P + R F + +T +LTG+ T + D R W+
Sbjct: 136 KLVWLKEHHPQL-FERMHKFVFISSMITHRLTGEFTTDITMAGTSMMTDLTQRNWSPQIL 194
Query: 201 EKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVARALGLNPGTPV 247
+ +GL R + + G+ IG + A LGL G PV
Sbjct: 195 QALGLS-------RRLFPPLVEAGEQIGT-LQNSAAAMLGLPVGVPV 233
Score = 28.7 bits (64), Expect = 9.8
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 485 KGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNP 544
+G I GLTL+++ + Y A ++ L + + + G+ A LLV GG +KN
Sbjct: 352 QGGIQGLTLNTTRGHI---YRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGG-SKNT 407
Query: 545 LYVQTHAD 552
L+ Q A+
Sbjct: 408 LWNQIRAN 415
>gnl|CDD|212661 cd07777, FGGY_SHK_like, sedoheptulokinase-like proteins; a
subfamily of the FGGY family of carbohydrate kinases.
This subfamily is predominantly composed of
uncharacterized bacterial and eukaryotic proteins with
similarity to human sedoheptulokinase (SHK, also known
as D-altro-heptulose or heptulokinase, EC 2.7.1.14)
encoded by the carbohydrate kinase-like (CARKL/SHPK)
gene. SHK catalyzes the ATP-dependent phosphorylation of
sedoheptulose to produce sedoheptulose 7-phosphate and
ADP. The presence of Mg2+ or Mn2+ might be required for
catalytic activity. Members of this subfamily belong to
the FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 448
Score = 36.5 bits (85), Expect = 0.035
Identities = 60/291 (20%), Positives = 96/291 (32%), Gaps = 65/291 (22%)
Query: 3 YLLSVDVGTSSVRAALV-------------STRGKVSPIAVRPIALWCPKPQLYEQSSED 49
Y+L +D+GT+SV+A L+ T V P EQ +
Sbjct: 2 YVLGIDIGTTSVKACLLDSETKEVLASQSKPTSANVPS----------DGPLGSEQDVDK 51
Query: 50 IWNSVCLAIRDVTKDVNPAQIKGVGVDATC----SLVALDTN---HQPLTISPTGDDSRN 102
I +++ ++ + K++ ++K +GV +V + IS T N
Sbjct: 52 ILSTLDSCLKRLPKELLK-KVKAIGV---TGQMHGIVLWKQDQSCEDGDLISITNTPVSN 107
Query: 103 VLLWMDHRAVSEADQINATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFD 162
+ W D R + + I L WL+KN P+
Sbjct: 108 LYTWQDGRCSED----FLKSLPKPQSHL-PIHTGFGCATLFWLQKNGPEFL-ESFDHCGT 161
Query: 163 LPDFLTWKLTGD-----ETQSLCSLVCKWTY-DAYDRRWNEDYFEKIGL--GDLKQNGWR 214
+ DF+ L G + S W Y D WN + + G L +
Sbjct: 162 IQDFVVAMLCGLSRPVMSPHNAAS----WGYFDLETNAWNSEILQAAGFPVHLLPE---- 213
Query: 215 AIGNTVKNPGQPIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATS 265
V PG G + + G+ GTPV V++ D LA L
Sbjct: 214 -----VVPPGTIAGT-LGGDWY---GIPKGTPVGVALGDLQCSVLACLQEE 255
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 33.7 bits (78), Expect = 0.23
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 229 HGVSTEVARAL---GLNPGTPVSVSM---IDAHAGALALLATSAPGIPEDID---SKLGL 279
+ +A AL G+ PG V+V M + L +L A +P D D +
Sbjct: 19 ARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPAERRAA 78
Query: 280 ICGTSTCHMALSAKKVQVPGVW 301
I + L+ + P
Sbjct: 79 ILARAGARAVLTDPGLAQPEEA 100
>gnl|CDD|214869 smart00866, UTRA, The UbiC transcription regulator-associated
(UTRA) domain is a conserved ligand-binding domain. It
has a similar fold to HutC/FarR-like bacterial
transcription factors of the GntR family. It is believed
to modulate activity of bacterial transcription factors
in response to binding small molecules.
Length = 143
Score = 31.9 bits (73), Expect = 0.32
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 9/67 (13%)
Query: 190 AYDRRW-NEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVST--------EVARALG 240
A + + F + DL + + + + T E A LG
Sbjct: 49 ALETTYLPAALFPGLLEEDLSGSLYEYLEERLGLKIVRSTRAEQTITAVLADEEEAELLG 108
Query: 241 LNPGTPV 247
L PG P+
Sbjct: 109 LPPGAPL 115
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 32.6 bits (75), Expect = 0.56
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 515 TRHIMDAMHAAGKTPAISTLLVSGGLAKNPL---YVQTHADVTGCNVLCPQE 563
I + + A K + + + GG ++P ++ G VL P +
Sbjct: 339 IDLIEEQLEQAEKGDKVKYIFLVGGFGESPYLRSRLKERFSSRGIRVLRPPD 390
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain
of the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange
factors, the ROK (repressor, ORF, kinase) family, the
hexokinase family, the FGGY family (which includes
glycerol kinase and similar carbohydrate kinases such
as rhamnulokinase and xylulokinase), the
exopolyphosphatase/guanosine pentaphosphate
phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 30.6 bits (69), Expect = 1.4
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 5 LSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKD 64
L +D+G++S +A + G++ P + P + P E+ +++
Sbjct: 1 LGIDIGSTSTKAGVADLDGEILPEEIVPTPVGRPGAVTDLDELEEALRE---LLKEA-LR 56
Query: 65 VNPAQIKGVGVDATC 79
++I VG+
Sbjct: 57 QLKSEIDAVGITEPG 71
>gnl|CDD|227263 COG4926, PblB, Phage-related protein [Function unknown].
Length = 698
Score = 31.0 bits (70), Expect = 2.0
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 59 RDVTKDVNPAQIKGVGVDATCSLVALDTNHQ----PLTISPTGD-DSRNVLLWMDHRAVS 113
R +T D+ IK VD A++ D + W +
Sbjct: 91 RHITMDLQDIAIKEFVVDNVTGATAMELLKDSLVGEHPFEFFSDISTLGSFNWEIKNVL- 149
Query: 114 EADQINATKHSVLDTVGGKISPEMETPKLLWLKK 147
+ I S+LD GG++ E + + LKK
Sbjct: 150 --EAIGGLDGSILDVYGGEL--ERDNNTISLLKK 179
>gnl|CDD|227944 COG5657, CSE1, CAS/CSE protein involved in chromosome segregation
[Cell division and chromosome partitioning].
Length = 947
Score = 30.6 bits (69), Expect = 2.8
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 177 QSLCSLVCKWTYDAYDRRWNEDYFEKIG-LGDLKQNGWRAIGNTVKNPGQPIGHGVSTE 234
Q L +LV + + ++ FE IG L LK T+ P + +E
Sbjct: 578 QLLDNLVEINAKNPSNPQFAHYTFEDIGALVFLKSGMCEITIPTLVLALVPEFPVLLSE 636
>gnl|CDD|235289 PRK04350, PRK04350, thymidine phosphorylase; Provisional.
Length = 490
Score = 29.8 bits (68), Expect = 3.9
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 230 GVSTEVARALGLNPGTPVSVSMIDAHAGALA 260
G+S R LG++ G V VS HA
Sbjct: 54 GLSESAFRRLGVSEGDEVEVS----HAPPPE 80
>gnl|CDD|224851 COG1940, NagC, Transcriptional regulator/sugar kinase
[Transcription / Carbohydrate transport and
metabolism].
Length = 314
Score = 29.8 bits (67), Expect = 4.2
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRD 60
+L +D+G + ++ ALV G++ P E I ++ + +
Sbjct: 5 AMTVLGIDIGGTKIKVALVDLDGEILLRERIPTP--------TPDPEEAILEAILALVAE 56
Query: 61 VTKDVNP-AQIKGVGV 75
+ K I G+G+
Sbjct: 57 LLKQAQGRVAIIGIGI 72
>gnl|CDD|219527 pfam07702, UTRA, UTRA domain. The UbiC transcription
regulator-associated (UTRA) domain is a conserved
ligand-binding domain that has a similar fold to
pfam04345. It is believed to modulate activity of
bacterial transcription factors in response to binding
small molecules.
Length = 141
Score = 28.4 bits (64), Expect = 5.7
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 13/68 (19%)
Query: 190 AYDRRW-NEDYFEKIGLGDLKQNG-WRAIGNTVKNPGQPIGHGVST--------EVARAL 239
A + + + + DL++ + + G PI T E A L
Sbjct: 49 ALEESYLPAELVPGLLEEDLEEGSLYAYLEEE---LGLPITRAEQTIEARLADAEEAELL 105
Query: 240 GLNPGTPV 247
G++PG PV
Sbjct: 106 GISPGAPV 113
>gnl|CDD|225911 COG3376, HoxN, High-affinity nickel permease [Inorganic ion
transport and metabolism].
Length = 342
Score = 28.5 bits (64), Expect = 9.5
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 502 TLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGLAKNPLYVQT 549
+L A + A G RH DA H A L+ G KNPL V
Sbjct: 47 SLLGAGLLAYTLGLRHAFDADHIAAIDNVTRKLMQQG---KNPLGVGF 91
>gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a
nucleoside-diphosphate-sugar 4-epimerase)-like, extended
(e) SDRs. Nucleoside-diphosphate-sugar 4-epimerase has
the characteristic active site tetrad and NAD-binding
motif of the extended SDR, and is related to more
specifically defined epimerases such as UDP-glucose 4
epimerase (aka UDP-galactose-4-epimerase), which
catalyzes the NAD-dependent conversion of UDP-galactose
to UDP-glucose, the final step in Leloir galactose
synthesis. This subgroup includes Escherichia coli
055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55
antigen synthesis. Extended SDRs are distinct from
classical SDRs. In addition to the Rossmann fold
(alpha/beta folding pattern with a central beta-sheet)
core region typical of all SDRs, extended SDRs have a
less conserved C-terminal extension of approximately 100
amino acids. Extended SDRs are a diverse collection of
proteins, and include isomerases, epimerases,
oxidoreductases, and lyases; they typically have a
TGXXGXXG cofactor binding motif. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 305
Score = 28.5 bits (64), Expect = 9.9
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 514 GTRHIMDAMHAAGKTPAI---STLLVSGGLAKNPLYVQTHAD 552
GTR++++A+ G P S+L V G NP+ T D
Sbjct: 95 GTRNLLEALRKNGPKPRFVFTSSLAVYGLPLPNPVTDHTALD 136
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.408
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,090,998
Number of extensions: 2686044
Number of successful extensions: 2651
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2421
Number of HSP's successfully gapped: 136
Length of query: 564
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 462
Effective length of database: 6,413,494
Effective search space: 2963034228
Effective search space used: 2963034228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)