RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10531
(564 letters)
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 491 bits (1267), Expect = e-170
Identities = 211/425 (49%), Positives = 282/425 (66%), Gaps = 10/425 (2%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRD 60
Y + VDVGT S RA + +G++ A R I ++ PK EQSSE+IW +VC A+RD
Sbjct: 4 ASYFIGVDVGTGSARAGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRD 63
Query: 61 VTKD--VNPAQIKGVGVDATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQI 118
+NP Q+KG+G DATCSLV LD PLT+SP+G + +NV++WMDHRA+++A++I
Sbjct: 64 AVNQADINPIQVKGLGFDATCSLVVLDKEGNPLTVSPSGRNEQNVIVWMDHRAITQAERI 123
Query: 119 NATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQS 178
NATKH VL+ VGG ISPEM+TPKLLWLK+++P+T W G FDLPDFLTW+ T DET+S
Sbjct: 124 NATKHPVLEFVGGVISPEMQTPKLLWLKQHMPNT-WSNVGHLFDLPDFLTWRATKDETRS 182
Query: 179 LCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVARA 238
LCS VCKWTY ++ RW+ YF+ +GL DL N IG TVK G P+GHG+S A
Sbjct: 183 LCSTVCKWTYLGHEDRWDPSYFKLVGLADLLDNNAAKIGATVKPMGAPLGHGLSQRAASE 242
Query: 239 LGLNPGTPVSVSMIDAHAGAL-ALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQV 297
+GL PGT VSVS+IDAHAG + L A+ G + D ++ LI GTST HMA+S +
Sbjct: 243 MGLIPGTAVSVSIIDAHAGTIGILGASGVTGENANFDRRIALIGGTSTAHMAMSRSAHFI 302
Query: 298 PGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNH 357
G+WGPYY ILP L E GQSATG L+DHII +HP +++++ + + LN+
Sbjct: 303 SGIWGPYYSAILPEYWLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKGETI-YEALNY 361
Query: 358 VIDT-----QHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLAT 412
++ ++ LT D H+ P FHGNRSP A+ ++ G+I GL L ++ + YLAT
Sbjct: 362 ILRQMAGEPENIAFLTNDIHMLPYFHGNRSPRANPNLTGIITGLKLSTTPEDMALRYLAT 421
Query: 413 IQALA 417
IQALA
Sbjct: 422 IQALA 426
Score = 135 bits (342), Expect = 3e-34
Identities = 52/103 (50%), Positives = 70/103 (67%), Gaps = 2/103 (1%)
Query: 462 LTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDA 521
LT D H+ P FHGNRSP A+ ++ G+I GL L ++ + YLATIQALA GTRHI++
Sbjct: 376 LTNDIHMLPYFHGNRSPRANPNLTGIITGLKLSTTPEDMALRYLATIQALALGTRHIIET 435
Query: 522 MHAAGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQEK 564
M+ G I T++ SGG KNP++VQ HA+ TGC +L P+E
Sbjct: 436 MNQNGYN--IDTMMASGGGTKNPIFVQEHANATGCAMLLPEES 476
Score = 57.3 bits (139), Expect = 7e-09
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 16/82 (19%)
Query: 411 ATIQALADVTKD--VNPAQIKGVGVDATCSLVALDTNHQPLTISPT-----------DTR 457
A A+ D +NP Q+KG+G DATCSLV LD PLT+SP+ D R
Sbjct: 56 AVCNAVRDAVNQADINPIQVKGLGFDATCSLVVLDKEGNPLTVSPSGRNEQNVIVWMDHR 115
Query: 458 HSTE---LTADFHVWPDFHGNR 476
T+ + A H +F G
Sbjct: 116 AITQAERINATKHPVLEFVGGV 137
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 427 bits (1100), Expect = e-144
Identities = 115/444 (25%), Positives = 186/444 (41%), Gaps = 39/444 (8%)
Query: 1 MEYLLSVDVGTSSVRAALVSTR-GKVSPIAVRPIALWC-----------PKPQLYEQSSE 48
+Y + VD GT S RA L+ G+ V P + Q
Sbjct: 4 TKYTIGVDYGTESGRAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPL 63
Query: 49 DIWNSVCLAIRDVTKD--VNPAQIKGVGVDAT-CSLVALDTNHQPLTISPTGDD--SRNV 103
D + ++ V K+ V+ + G+GVD T C+++ +D QPL + D V
Sbjct: 64 DYVEVLTTSVPAVMKESGVDADDVIGIGVDFTACTMLPVDEEGQPLCLLAQYKDNPHSWV 123
Query: 104 LLWMDHRAVSEADQINATKHS----VLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGL 159
LW H A +A+ IN L GGKIS E K+ + D + R
Sbjct: 124 KLWKHHAAQDKANAINEMAEKRGEAFLPRYGGKISSEWMIAKVWQILDEAEDV-YNRTDQ 182
Query: 160 FFDLPDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNT 219
F + D++ ++TG ++ C+ K + + + ++F+ + L+ +
Sbjct: 183 FLEATDWIVSQMTGKIVKNSCTAGYKAIWHKREGYPSNEFFKALDP-RLEHLTTTKLRGD 241
Query: 220 VKNPGQPIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGL 279
+ G+ G G+ E+A +GLNPG V+V +DAHA A+ T PG KL +
Sbjct: 242 IVPLGERAG-GLLPEMAEKMGLNPGIAVAVGNVDAHAAVPAVGVT-TPG-------KLVM 292
Query: 280 ICGTSTCHMALSAKKVQVPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSI 339
GTS CHM L K+ +V G+ G + I+P E+GQSA G + + + + +
Sbjct: 293 AMGTSICHMLLGEKEQEVEGMCGVVEDGIIPGYLGYEAGQSAVGDIFAWFVKHGVSAAT- 351
Query: 340 MKKLNTEELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLD 399
E+ V L + ++GNRS L D ++ GM+ G TL
Sbjct: 352 -FDEAQEKGVNVHALLEEKASQ--LRPGESGLLALDWWNGNRSILVDTELSGMLLGYTLQ 408
Query: 400 SSETSLVTLYLATIQALADVTKDV 423
T +Y A ++A A T+ +
Sbjct: 409 ---TKPEEIYRALLEATAFGTRAI 429
Score = 122 bits (309), Expect = 8e-30
Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 465 DFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHA 524
++GNRS L D ++ GM+ G TL T +Y A ++A A+GTR I+DA H
Sbjct: 379 GLLALDWWNGNRSILVDTELSGMLLGYTLQ---TKPEEIYRALLEATAFGTRAIVDAFHG 435
Query: 525 AGKTPAISTLLVSGGL-AKNPLYVQTHADVTGCNVLCPQEK 564
G + L GGL KN L +Q ADVT + K
Sbjct: 436 RGV--EVHELYACGGLPQKNHLLMQIFADVTNREIKVAASK 474
Score = 52.8 bits (127), Expect = 2e-07
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 411 ATIQALADVTKD--VNPAQIKGVGVDAT-CSLVALDTNHQPLTISPTDTRHSTELTADFH 467
++ V K+ V+ + G+GVD T C+++ +D QPL + + +
Sbjct: 68 VLTTSVPAVMKESGVDADDVIGIGVDFTACTMLPVDEEGQPLCLLAQ---YKDNPHSWVK 124
Query: 468 VWPD 471
+W
Sbjct: 125 LWKH 128
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 214 bits (547), Expect = 4e-63
Identities = 82/406 (20%), Positives = 139/406 (34%), Gaps = 51/406 (12%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61
++ +D+GT+S A LV V +A RP L P P E+ W++ + ++
Sbjct: 7 RQVIGLDIGTTSTIAILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAEL 66
Query: 62 TK--DVNPAQIKGVGVDAT-CSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQI 118
+ + G+ V ++V LD L R + D R E ++
Sbjct: 67 KTTAGESDWRPGGICVTGMLPAVVLLDDRGAVL---------RPSIQQSDGRCGDEVAEL 117
Query: 119 NAT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDET 176
A + L G ++ ++ T KL W++++ P + D++ LTG+
Sbjct: 118 RAEVDSEAFLARTGNGVTQQLVTAKLRWIERHEPAV-FGAIATVCGSYDYINMLLTGERV 176
Query: 177 QSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVA 236
+ D D + + + +G V+ E A
Sbjct: 177 VDRNWALEGGFIDLASGTVEADLVALAHIP-------PSAVPPAHPTHRVLGA-VTAEAA 228
Query: 237 RALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQ 296
GL G PV D A ALA T PG + L G + + SA
Sbjct: 229 ALTGLPTGLPVYGGAADHIASALAAGIT-RPG-------DVLLKFGGAGDIIVASATAKS 280
Query: 297 VPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLN 356
P ++ Y+ ++P + +ATG L+ + L E L+
Sbjct: 281 DPRLYLDYH--LVPGLYAPNGCMAATGSALNWLAKL----------LAPEAGEAAHAQLD 328
Query: 357 HVIDTQHSTELTAD---FHVWPDFHGNRSPLADADMKGMICGLTLD 399
+ AD P F G ++P+ D G GL+L
Sbjct: 329 ALAAE---VPAGADGLVCL--PYFLGEKTPIHDPFASGTFTGLSLS 369
Score = 73.0 bits (180), Expect = 7e-14
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 472 FHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAI 531
F G ++P+ D G GL+L + L+ A ++A+A RH + + G P
Sbjct: 347 FLGEKTPIHDPFASGTFTGLSLS---HTRGHLWRALLEAVALAFRHHVAVLDDIGHAP-- 401
Query: 532 STLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563
S G ++ +++ ADV V
Sbjct: 402 QRFFASDGGTRSRVWMGIMADVLQRPVQLLAN 433
Score = 42.2 bits (100), Expect = 4e-04
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 411 ATIQALADVTK--DVNPAQIKGVGVDAT-CSLVALDTNHQPLTISPT--DTR 457
LA++ + + G+ V ++V LD L S D R
Sbjct: 58 NARAVLAELKTTAGESDWRPGGICVTGMLPAVVLLDDRGAVLRPSIQQSDGR 109
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 199 bits (509), Expect = 2e-57
Identities = 75/414 (18%), Positives = 143/414 (34%), Gaps = 59/414 (14%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRD 60
Y+ + D+GT+ V+AAL G + + + EQ + D +++V
Sbjct: 4 AFYIATFDIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASS 63
Query: 61 VTK-DVNPAQIKGVGVD-ATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQI 118
+ V+ ++ + + + + LD +H+PL +L+ D R + EA++I
Sbjct: 64 WWQSGVDARRVSAIVLSGQMQNFLPLDQDHEPL---------HRAVLYSDKRPLKEAEEI 114
Query: 119 NAT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLP-DFLTWKLTG-- 173
NA ++ + ++ PKL++ + + P + R D++ +LTG
Sbjct: 115 NARHGADNLWSALENPMTAASILPKLVFWRASFPQA-FGRLRHVVLGAKDYVVLRLTGRH 173
Query: 174 --DETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGV 231
D T + + + Y D W+ + G + + PG+ +G V
Sbjct: 174 ATDRTNASTTGL----YRPKDDAWHVELLADYGFS-------LDLMPRLLEPGEQVGG-V 221
Query: 232 STEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALS 291
S AR G GTPV + DA A L + L GT+ L+
Sbjct: 222 SALAARQTGFVSGTPVLCGLGDAGAATLGVGVL-DDE-------DAYLHLGTTGWLARLT 273
Query: 292 AKKVQVPGVWGP--YYEVILPNTHLLESGQSATGKLL----DHIINNHPATQSIMKKLNT 345
G I+ L + G +L + + + +
Sbjct: 274 QTDPVGDMPVGTIFRLAGIIAGKTLQVAPVLNAGNILQWALTLVGHRPGEDCAEYFHMA- 332
Query: 346 EELAPVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLD 399
+ + ++ F P H R P+ +G + G+T
Sbjct: 333 AAEVQGVTVPDGLL-----------FV--PYLHAERCPVELPAPRGALLGVTGA 373
Score = 71.1 bits (175), Expect = 3e-13
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P H R P+ +G + G+T T+ + LA ++ A R + +
Sbjct: 349 PYLHAERCPVELPAPRGALLGVTGA---TTRAQILLAVLEGAALSLRWCAELLGMEK--- 402
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563
+ L V GG A++ +++ AD ++L +
Sbjct: 403 -VGLLKVVGGGARSEAWLRMIADNLNVSLLVKPD 435
Score = 39.2 bits (92), Expect = 0.003
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 411 ATIQALADVTK-DVNPAQIKGVGVD-ATCSLVALDTNHQPLTISPT--DTRHSTE 461
A + + + V+ ++ + + + + LD +H+PL + D R E
Sbjct: 56 AVQRIASSWWQSGVDARRVSAIVLSGQMQNFLPLDQDHEPLHRAVLYSDKRPLKE 110
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 185 bits (471), Expect = 2e-52
Identities = 82/397 (20%), Positives = 140/397 (35%), Gaps = 44/397 (11%)
Query: 4 LLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTK 63
+ +D+GTS V+ L++ +G+V + + P P EQ E W + A++ +
Sbjct: 2 YIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGD 61
Query: 64 DVNPAQIKGVGVDATC-SLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQINATK 122
+ +K +G+ LD + L R +LW D R E + A
Sbjct: 62 QHSLQDVKALGIAGQMHGATLLDAQQRVL---------RPAILWNDGRCAQECTLLEARV 112
Query: 123 HSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQSLCSL 182
G + P PKLLW++++ P+ +R+ D+L ++TG+ +
Sbjct: 113 PQSRVITGNLMMPGFTAPKLLWVQRHEPEI-FRQIDKVLLPKDYLRLRMTGEFASDMSDA 171
Query: 183 VCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVARALGLN 242
D R W++ + L R + + G + EVA+A G+
Sbjct: 172 AGTMWLDVAKRDWSDVMLQACDLS-------RDQMPALYEGSEITGA-LLPEVAKAWGM- 222
Query: 243 PGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQVPGVWG 302
PV D AGA+ + + L GTS + A+S + P
Sbjct: 223 ATVPVVAGGGDNAAGAVGVGMV-DAN-------QAMLSLGTSGVYFAVSEGFLSKPESAV 274
Query: 303 PYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNHVIDTQ 362
+ LP L S + LD K + +I +
Sbjct: 275 HSFCHALPQRWHLMSVMLSAASCLD----------WAAKLTGLSNVPALIAAAQQA--DE 322
Query: 363 HSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLD 399
+ + F P G R+P + KG+ GLT
Sbjct: 323 SAEPVW--FL--PYLSGERTPHNNPQAKGVFFGLTHQ 355
Score = 72.3 bits (178), Expect = 1e-13
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P G R+P + KG+ GLT L A ++ + Y MD +HA G P
Sbjct: 331 PYLSGERTPHNNPQAKGVFFGLTHQ---HGPNELARAVLEGVGYALADGMDVVHACGIKP 387
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563
++ + GG A++ + Q AD++G +
Sbjct: 388 --QSVTLIGGGARSEYWRQMLADISGQQLDYRTG 419
Score = 41.8 bits (99), Expect = 5e-04
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 411 ATIQALADVTKDVNPAQIKGVGVDATC-SLVALDTNHQPLTISPT--DTRHSTE 461
AT +A+ + + +K +G+ LD + L + D R + E
Sbjct: 51 ATDRAMKALGDQHSLQDVKALGIAGQMHGATLLDAQQRVLRPAILWNDGRCAQE 104
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 174 bits (443), Expect = 3e-48
Identities = 73/410 (17%), Positives = 147/410 (35%), Gaps = 61/410 (14%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRD 60
++Y++ +DVGT++ + L GK + L K E+ + I+++V I D
Sbjct: 3 LKYIIGMDVGTTATKGVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFD 62
Query: 61 VTKDVNPAQIKGVGVD-ATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQIN 119
+T+ + +I + SL+ L ++ + L N + W D+ A S
Sbjct: 63 LTQKI-DGKIAAISWSSQMHSLIGLGSDDELL---------TNSITWADNCAKSIVQDAK 112
Query: 120 AT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTG---- 173
+ G + P KLLWLK + + +A + + +++ ++LTG
Sbjct: 113 NRGFAQQIYRKTGMPMHPMAPIYKLLWLKNKKTEV-FSQAQKWIGIKEYIIFRLTGKLVT 171
Query: 174 DETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVST 233
D T + + + + W+++ + + + + + P + I + T
Sbjct: 172 DTTMAAGTGI----LNLKTLTWDQELLDILKIK-------KEQLPKIAQPTKVIFP-IKT 219
Query: 234 EVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAK 293
E + LG++ T + + D + + + A L + GTS + +
Sbjct: 220 EYVKKLGIDSDTKIILGASDGYLSTIGVNAI-DSD-----HCALNV--GTSGAIRTIVDQ 271
Query: 294 KVQVPGVWGPYYEVILPNTHLLESGQSATGKLL----DHIINNHPATQSIMKKLNTEELA 349
P Y +LL + G + + + Q + T
Sbjct: 272 PKIDPSASYFCY-PADKTHYLLGGPVNNGGIVFNWARQTLFDADETPQDFLDVAQTAPAG 330
Query: 350 PVIQYLNHVIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLD 399
++I F P G R+P+ DA+ +G GLT
Sbjct: 331 S-----RNLI-----------FL--PYLGGERAPIWDANARGSFVGLTRM 362
Score = 72.2 bits (178), Expect = 1e-13
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P G R+P+ D + +G GLT + A I+ + + + K
Sbjct: 338 PYLGGERAPIWDANARGSFVGLTRM---HQKPEMARAVIEGIIFNLYDAASNLIKNTKK- 393
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
+ +GG K+ Q A++ ++ +
Sbjct: 394 -PVAINATGGFLKSDFVRQLCANIFNVPIVTMK 425
Score = 36.0 bits (84), Expect = 0.031
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 411 ATIQALADVTKDVNPAQIKGVGVD-ATCSLVALDTNHQPLTISPT--DTR 457
A + + D+T+ + +I + SL+ L ++ + LT S T D
Sbjct: 55 AVQEIIFDLTQKI-DGKIAAISWSSQMHSLIGLGSDDELLTNSITWADNC 103
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 146 bits (370), Expect = 4e-38
Identities = 40/300 (13%), Positives = 77/300 (25%), Gaps = 60/300 (20%)
Query: 1 MEYLLSVDVGTSSVRAALVSTR-GKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIR 59
+ VD T S + + G++ W++ A
Sbjct: 4 RTLVAGVDTSTQSCKVRVTDAETGELVRFGQAKHPNGT------SVDPSYWWSAFQEAAE 57
Query: 60 DVTKDVNPAQIKGVGVDA-TCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQI 118
+ + V +V LD + R+ +LW D + +A +
Sbjct: 58 QA---GGLDDVSALAVGGQQHGMVILDNQGNVI---------RDAMLWNDTSSAPQAAAL 105
Query: 119 NAT------------------KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLF 160
K + VG K+ W+ +N P+ ++
Sbjct: 106 IEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLTKVAWVAENEPEN-VKKIAAI 164
Query: 161 FDLP-DFLTWKLTGDETQSLCSLVCKWT-------------YDAYDRRWNEDYFEKIGLG 206
LP D+L+W++ G + YDA + D +
Sbjct: 165 C-LPHDWLSWRIAGYGPVAEGEDAHLEALFTDRSDASGTIYYDAASNEYRRDLIAMVLEA 223
Query: 207 DLKQNGWRAIGN-----TVKNPGQPIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALAL 261
++ TV P + + G ++ D +L L
Sbjct: 224 AEGAKAAQSHAEAIVLPTVLGPRDAAPV-KADPAIAGKNVEGGCLLAPGGGDNAMASLGL 282
Score = 62.0 bits (151), Expect = 2e-10
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P F G R+P + G+TL + T+ L A ++ L R ++ + + G +
Sbjct: 369 PYFDGERTP-NRPNATATFSGMTL--ANTTRENLARAFVEGLLCSQRDCLELIRSLGAS- 424
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563
I+ +L+ GG AK+ + G +V P
Sbjct: 425 -ITRILLIGGGAKSEAIRTLAPSILGMDVTRPAT 457
Score = 31.6 bits (72), Expect = 0.85
Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 6/50 (12%)
Query: 411 ATIQALADVTKDVNPAQIKGVGVDA-TCSLVALDTNHQPLTISPT--DTR 457
A +A + + V +V LD + + DT
Sbjct: 51 AFQEAAEQA---GGLDDVSALAVGGQQHGMVILDNQGNVIRDAMLWNDTS 97
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 126 bits (318), Expect = 2e-31
Identities = 64/415 (15%), Positives = 120/415 (28%), Gaps = 48/415 (11%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRD 60
+ +D+G + + +L G++ VRP + + D + +
Sbjct: 5 TGATIVIDLGKTLSKVSLWDLDGRMLDRQVRPSIP-LEIDGIRRLDAPDTGRWLLDVLSR 63
Query: 61 VTKDVNPAQIKGVGVDAT-CSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQIN 119
+ + + AL + + L + +
Sbjct: 64 YADH----PVTTIVPVGHGAGIAALT-DGRLA---------FPPLDYEQSIPEAVMADYR 109
Query: 120 ATKHSVLDTVGGKISPEMET-PKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQS 178
+ + T + + +L WL + PD A L + W LTG
Sbjct: 110 SQRDPFARTGSPALPDGLNIGSQLWWLDQLHPD-VMANATLLP-WAQYWAWFLTGRAVSE 167
Query: 179 LCSLVCK-WTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVSTEVAR 237
+ SL C +D D ++ K+ GW A + G +G + +A
Sbjct: 168 VTSLGCHSDLWDPQDGDFSP---------MAKRLGWAARFAPIVRAGDTVGA-LLPAIAE 217
Query: 238 ALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALSAKKVQV 297
GL+P V + D++A LA A G E D++ ++ T T +A+ V
Sbjct: 218 RTGLSPDVQVLAGLHDSNAALLA-----ARGFAEIADNEATVL-STGTWFIAMRLPATPV 271
Query: 298 PGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPVIQYLNH 357
P L N G+ + + +++T +
Sbjct: 272 DTATLPEARDCLVNVD-------VHGRPVPSARFMGGREIETLIEIDTRRVDIKPDQPAL 324
Query: 358 VIDTQHSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLDSSE-TSLVTLYLA 411
+ L + P P + D E + LY A
Sbjct: 325 LAAV--PEVLRHGRMILPTLMRGFGPYPHG--RFAWINRPEDWFERRAAACLYAA 375
Score = 45.2 bits (107), Expect = 5e-05
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 15/87 (17%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSE-TSLVTLYLATIQALAYGTRHIMDAMHAAGKT 528
P P + D E + LY A +D + + G
Sbjct: 340 PTLMRGFGPYPH--GRFAWINRPEDWFERRAAACLYAA------LVADTALDLIGSTG-- 389
Query: 529 PAISTLLVSGGLAKNPLYVQTHADVTG 555
+LV G A+ ++V+ A +
Sbjct: 390 ----RILVEGRFAEADVFVRALASLRP 412
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 116 bits (292), Expect = 5e-28
Identities = 65/440 (14%), Positives = 122/440 (27%), Gaps = 77/440 (17%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAV----RPIALWCPKPQLYEQSSEDIWNSVCL 56
++VD+G SS R L + + + R + + + +++ L
Sbjct: 3 FRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRL 62
Query: 57 AIRDVTKDVNPAQIKGVGVDA-TCSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEA 115
+ V I +G+D V LD Q + + + D R
Sbjct: 63 GLNKV--CAAGIAIDSIGIDTWGVDFVLLDQQGQRV---------GLPVAYRDSRTNGLM 111
Query: 116 DQINAT--KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTG 173
Q K + G + P +L L + P+ +PD+ +++LTG
Sbjct: 112 AQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPE-LIPHIAHALLMPDYFSYRLTG 170
Query: 174 DETQSLCSLVCKWT-------YDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQP 226
+ ++T + W+E G +A +PG
Sbjct: 171 K-------MNWEYTNATTTQLVNINSDDWDESLLAWSGAN-------KAWFGRPTHPGNV 216
Query: 227 IGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTC 286
IGH + V+V +H A A++A+ G L GT +
Sbjct: 217 IGH-WICPQGNEIP-----VVAV---ASHDTASAVIASPLNG-----SRAAYLSSGTWSL 262
Query: 287 HMALSAKKVQVPG--VWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLN 344
S E + + Q ++++
Sbjct: 263 MGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGLW-----------LLQRVLQERQ 311
Query: 345 TEELAPVIQYLNHVIDTQHSTELTADFHV-WPDFHGNRSPLADADMKGMICGLTLDSSET 403
+L +I TQ + F ++ + S+
Sbjct: 312 INDLPALIAA------TQALPACRFIINPNDDRFINPDEMCSEIQAACREMAQPIPESDA 365
Query: 404 SLVTLYLATIQALADVTKDV 423
L +LA + DV
Sbjct: 366 ELAR---CIFDSLALLYADV 382
Score = 61.1 bits (149), Expect = 4e-10
Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 4/95 (4%)
Query: 469 WPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKT 528
F +++ + S+ L +LA ++ +
Sbjct: 336 DDRFINPDEMCSEIQAACREMAQPIPESDAELAR---CIFDSLALLYADVLHELAQLRGE 392
Query: 529 PAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563
S L + GG +N L Q AD G V+
Sbjct: 393 D-FSQLHIVGGGCQNTLLNQLCADACGIRVIAGPV 426
>2w40_A Glycerol kinase, putative; closed conformation, malaria,
transferase, sugar kinase/HSP70/actin superfamily, open
conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Length = 503
Score = 63.7 bits (156), Expect = 7e-11
Identities = 37/185 (20%), Positives = 65/185 (35%), Gaps = 22/185 (11%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRD 60
M +LS+D T S + + C KP YE +I ++ + +
Sbjct: 3 MNVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNE 62
Query: 61 VTK----DVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVS 113
K IK +G+ TN + I TG N ++W+D R
Sbjct: 63 GIKVLKDKYTSVIIKCIGI----------TNQRETVIIWDRITGKPLYNAIVWLDTRVEE 112
Query: 114 EADQINATKHS--VLDTVGGKISPEMETPKLLWLKKNLPDTCWR-RAG-LFFDLPD-FLT 168
+ +A ++ + G + K+LWL +N P+ + G + +L
Sbjct: 113 LVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLI 172
Query: 169 WKLTG 173
+ LT
Sbjct: 173 FNLTK 177
Score = 63.0 bits (154), Expect = 1e-10
Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 481 DVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVSGGL 540
D + I G+T ++ + +V A ++ +A+ I+D++ + + L GG+
Sbjct: 361 RSDARASIYGMTFNTERSHIVR---ALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGM 417
Query: 541 AKNPLYVQTHADVTGCNVLCPQ 562
KN ++Q ++D+ + +
Sbjct: 418 TKNKPFMQFNSDIINTKIEVSK 439
Score = 29.4 bits (67), Expect = 3.7
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 351 VIQYL--NHVIDTQHSTELTA-------DFHVWPDFHGNRSPLADADMKGMICGLTLDSS 401
+ +L N +ID P F G +P +D + I G+T ++
Sbjct: 317 GVSWLLKNKLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTE 376
Query: 402 ETSLVTLYLATIQALADVTKDVNPAQIKGVGVDATCSL 439
+ +V A ++ +A ++ + +G++ L
Sbjct: 377 RSHIVR---ALLEGIAFQLNEIVDSLTSDMGIEMLHVL 411
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.80A {Thermus thermophilus}
Length = 495
Score = 62.2 bits (152), Expect = 2e-10
Identities = 50/183 (27%), Positives = 76/183 (41%), Gaps = 20/183 (10%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRD 60
M +LL++D GT+S RA L + G+ +A R PKP E +IW + A R+
Sbjct: 1 MAFLLALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAARE 60
Query: 61 V--TKDVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEA 115
V ++ +G+ TN + T+ TG N ++W D R
Sbjct: 61 VLRRAGAEAGEVLALGI----------TNQRETTLLWDRKTGKPLHNAIVWQDRRTTPLC 110
Query: 116 DQINATKHS--VLDTVGGKISPEMETPKLLWLKKNLPDTCWR-RAG-LFFDLPD-FLTWK 170
+ + A + G P KL+WL +N+P R G + F D +L W
Sbjct: 111 EALRAKGLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAEGGGVAFGTVDTWLIWN 170
Query: 171 LTG 173
LTG
Sbjct: 171 LTG 173
Score = 57.5 bits (140), Expect = 7e-09
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P F G +P D +G + GLT +S L A ++ +A+ R ++ AM
Sbjct: 342 PAFTGLGAPYWDPYARGTLLGLTRGTSRAHLAR---AALEGVAFQVRDVVLAMEEEAGVR 398
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
+ L GG+A+N L+++ AD+ G V P+
Sbjct: 399 -LKVLKADGGMAQNRLFLKIQADLLGVPVAVPE 430
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif,
actin- like ATPase domain, transferase; 2.30A
{Cellulomonas SP}
Length = 504
Score = 59.5 bits (145), Expect = 1e-09
Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 20/182 (10%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61
+Y+L++D GT+S RA + G++ P+ E + E IWN+V +
Sbjct: 2 DYVLAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLA 61
Query: 62 TK--DVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEAD 116
++ I VG+ TN + + TG N ++W D R D
Sbjct: 62 LTRGNLTHEDIAAVGI----------TNQRETAVVWDKTTGKPVYNAIVWQDTRTQKIVD 111
Query: 117 QINATKHS--VLDTVGGKISPEMETPKLLWLKKNLPDTCWR-RAG-LFFDLPD-FLTWKL 171
++ + + VG ++ PK+ W+ N+ + G L F D ++ W +
Sbjct: 112 ELGGDEGAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDTWVLWNM 171
Query: 172 TG 173
TG
Sbjct: 172 TG 173
Score = 56.8 bits (138), Expect = 1e-08
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P F G +P D +G + GLT + + A ++A A+ +R ++DAM+A
Sbjct: 347 PAFSGLFAPYWRPDARGALVGLTRYVNRNHIAR---AALEATAFQSREVVDAMNADSGVD 403
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
++ L V GG+ N L +Q AD G +V+ P+
Sbjct: 404 -LTELRVDGGMVANELLMQFQADQLGVDVVRPK 435
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation,
microfluidics,; 2.00A {Escherichia coli} SCOP: c.55.1.4
c.55.1.4 PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G*
1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y*
1gll_Y*
Length = 510
Score = 59.5 bits (145), Expect = 1e-09
Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 20/182 (10%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61
+Y++++D GT+S RA ++ + ++ R PKP E +IW + + +V
Sbjct: 3 KYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEV 62
Query: 62 TK--DVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEAD 116
D++ QI +G+ TN + TI TG N ++W R +
Sbjct: 63 LAKADISSDQIAAIGI----------TNQRETTIVWEKETGKPIYNAIVWQCRRTAEICE 112
Query: 117 QINATKHS--VLDTVGGKISPEMETPKLLWLKKNLPDTCWR-RAG-LFFDLPD-FLTWKL 171
+ + G I P K+ W+ ++ + R R G L F D +L WK+
Sbjct: 113 HLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKM 172
Query: 172 TG 173
T
Sbjct: 173 TQ 174
Score = 57.9 bits (141), Expect = 4e-09
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P F G +P D +G I GLT + ++ AT++++AY TR +++AM A
Sbjct: 345 PAFTGLGAPYWDPYARGAIFGLTRGVNANHIIR---ATLESIAYQTRDVLEAMQADSGIR 401
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
+ L V GG N +Q +D+ G V P+
Sbjct: 402 -LHALRVDGGAVANNFLMQFQSDILGTRVERPE 433
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism,
nucleotide-binding, transferase, struct genomics; HET:
MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Length = 501
Score = 58.7 bits (143), Expect = 2e-09
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 21/184 (11%)
Query: 1 ME-YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIR 59
ME Y+LS+D GT+S RA L + +G+++ +A R + P+ E + +IW SV +
Sbjct: 4 MEKYILSIDQGTTSSRAILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMT 63
Query: 60 DVTK--DVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSE 114
+V DV QI G+G+ TN + T+ TG + ++W + S
Sbjct: 64 EVINENDVRADQIAGIGI----------TNQRETTVVWDKHTGRPIYHAIVWQSRQTQSI 113
Query: 115 ADQINATKHS--VLDTVGGKISPEMETPKLLWLKKNLPDTCWR-RAG-LFFDLPD-FLTW 169
++ + D G + P K+ W+ N+ + G L F D +L W
Sbjct: 114 CSELKQQGYEQTFRDKTGLLLDPYFAGTKVKWILDNVEGAREKAENGDLLFGTIDTWLVW 173
Query: 170 KLTG 173
KL+G
Sbjct: 174 KLSG 177
Score = 57.9 bits (141), Expect = 4e-09
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P F G +P D + +G I GLT + + + AT+++L Y TR +M+AM
Sbjct: 348 PAFVGLGTPYWDSEARGAIFGLTRGTEKEHFIR---ATLESLCYQTRDVMEAMSKDSGID 404
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
+ +L V GG KN +Q AD+ +V P+
Sbjct: 405 -VQSLRVDGGAVKNNFIMQFQADIVNTSVERPE 436
Score = 28.3 bits (64), Expect = 8.1
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 375 PDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDV 423
P F G +P D++ +G I GLT + + + AT+++L T+DV
Sbjct: 348 PAFVGLGTPYWDSEARGAIFGLTRGTEKEHFIR---ATLESLCYQTRDV 393
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti
binding, phosphoprotein, transferase; 1.73A
{Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X
3h45_X 3d7e_O 1r59_O 1xup_O
Length = 506
Score = 58.3 bits (142), Expect = 3e-09
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 20/182 (10%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61
Y++++D GT+S RA + GK + + + PK E ++ +IWNSV I
Sbjct: 5 NYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGA 64
Query: 62 TK--DVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEAD 116
+ P I G+G+ TN + T+ TG N ++W ++ AD
Sbjct: 65 FIESGIRPEAIAGIGI----------TNQRETTVVWDKTTGQPIANAIVWQSRQSSPIAD 114
Query: 117 QINATKHS--VLDTVGGKISPEMETPKLLWLKKNLPDTCWR-RAG-LFFDLPD-FLTWKL 171
Q+ H+ + + G I K+ WL N+ + G L F D +L WKL
Sbjct: 115 QLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKL 174
Query: 172 TG 173
T
Sbjct: 175 TD 176
Score = 57.9 bits (141), Expect = 5e-09
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P F G +P D + +G + GLT +++ V AT+QA+AY ++ ++D M
Sbjct: 347 PAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVR---ATLQAVAYQSKDVIDTMKKDSGID 403
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
I L V GG AKN L +Q AD+ +V
Sbjct: 404 -IPLLKVDGGAAKNDLLMQFQADILDIDVQRAA 435
Score = 27.9 bits (63), Expect = 9.3
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 375 PDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDV 423
P F G +P D++ +G + GLT +++ V AT+QA+A +KDV
Sbjct: 347 PAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVR---ATLQAVAYQSKDV 392
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
transferase; 2.33A {Sinorhizobium meliloti}
Length = 520
Score = 58.0 bits (141), Expect = 4e-09
Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 20/182 (10%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61
Y+L++D GT+S RA + K++ + + PK E E+IW +V +++
Sbjct: 26 GYILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEA 85
Query: 62 TK--DVNPAQIKGVGVDATCSLVALDTNHQPLTI---SPTGDDSRNVLLWMDHRAVSEAD 116
+ + I +G+ TN + + TG N ++W D R + D
Sbjct: 86 IEKSGITANDIAAIGI----------TNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCD 135
Query: 117 QINATKHS--VLDTVGGKISPEMETPKLLWLKKNLPDTCWR-RAG-LFFDLPD-FLTWKL 171
++ + G + P KL WL N+ R G L F D FL W+L
Sbjct: 136 KLKKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRL 195
Query: 172 TG 173
TG
Sbjct: 196 TG 197
Score = 58.0 bits (141), Expect = 5e-09
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHA-AGKT 528
P F G +P D D +G I G+T ++ A ++A+ Y TR +++AMH +
Sbjct: 367 PAFTGLGAPHWDPDARGAIFGMTRNTGPAEFAR---AALEAVCYQTRDLLEAMHKDWRRN 423
Query: 529 PAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
+ L V GG+ + +Q +D+ V P
Sbjct: 424 GNDTVLRVDGGMVASDWTMQRLSDLLDAPVDRPV 457
Score = 28.7 bits (65), Expect = 6.2
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 375 PDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDV 423
P F G +P D D +G I G+T ++ A ++A+ T+D+
Sbjct: 367 PAFTGLGAPHWDPDARGAIFGMTRNTGPAEFAR---AALEAVCYQTRDL 412
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL
metabolism, nucleotide-binding, transferase; 2.40A
{Thermococcus kodakarensis}
Length = 497
Score = 57.6 bits (140), Expect = 6e-09
Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 19/182 (10%)
Query: 1 ME-YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIR 59
ME ++LS+D GT+S RA + + I P+P E + E+IW++ AI+
Sbjct: 1 MEKFVLSLDEGTTSARAIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIK 60
Query: 60 DVTK--DVNPAQIKGVGVDATCSLVALDTNHQPLTI--SPTGDDSRNVLLWMDHRAVSEA 115
D + + P QI +GV TN + T+ G N ++W R
Sbjct: 61 DAIQSARIEPNQIAAIGV----------TNQRETTLVWDKDGKPLYNAIVWQCRRTAEMV 110
Query: 116 DQINAT-KHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWR-RAG-LFFDLPD-FLTWKL 171
++I + + G KL WL N+P + G + F D FL ++L
Sbjct: 111 EEIKREYGTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKAEKGEVMFGTVDTFLIYRL 170
Query: 172 TG 173
TG
Sbjct: 171 TG 172
Score = 56.8 bits (138), Expect = 1e-08
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 470 PDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATIQALAYGTRHIMDAMHAAGKTP 529
P F G +P D +G+I G+T + L AT++A+AY TR ++D M +
Sbjct: 339 PAFVGLGAPYWDQFARGIIIGITRGTGREHLAR---ATLEAIAYLTRDVVDEMEKLVQ-- 393
Query: 530 AISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
I L V GG N +Q AD+ V+ P
Sbjct: 394 -IKELRVDGGATANDFLMQFQADILNRKVIRPV 425
Score = 28.7 bits (65), Expect = 6.6
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 375 PDFHGNRSPLADADMKGMICGLTLDSSETSLVTLYLATIQALADVTKDV 423
P F G +P D +G+I G+T + L AT++A+A +T+DV
Sbjct: 339 PAFVGLGAPYWDQFARGIIIGITRGTGREHLAR---ATLEAIAYLTRDV 384
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 5e-07
Identities = 97/628 (15%), Positives = 173/628 (27%), Gaps = 222/628 (35%)
Query: 9 VGTSSVRAALVSTRGKVSP-IAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTKDVNP 67
+ S R L + G + + V P A + QL EQ ++ + D P
Sbjct: 1 MDAYSTRP-LTLSHGSLEHVLLV-PTASFFIASQLQEQFNKILPE----PTEGFAADDEP 54
Query: 68 AQIKGVGVDATCSLVA-----LDTNHQPLTISPTGDDSRNVL-------LWMD--HRAVS 113
LV + + +P + L L + H +
Sbjct: 55 T--------TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 114 EADQINAT----KHSVLDT------VGGKISPEMETPKLLWLKKNLPDTCWRRAGLF--F 161
+ Q N T ++ + + + L + + + A L F
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF---RAVGE---GNAQLVAIF 160
Query: 162 ----DLPDFLTWKLTGDETQSLCSLVCKWTYDAY--------------------DRRWNE 197
+ D+ +E + L Y Y E
Sbjct: 161 GGQGNTDDYF------EELRDL--------YQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 198 DYFEKIGLGDLKQNGWRAIGNTVKNPGQP-----------IG-----HGVSTEVARALGL 241
F + GL ++ + W + N P + IG H V T A+ LG
Sbjct: 207 KVFTQ-GL-NILE--W--LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT--AKLLGF 258
Query: 242 NPGTPVSVSMIDAHAGAL----ALLATSAPGIPEDIDS-------------KLGLICGTS 284
PG + GA L+ A + +S +G+ C +
Sbjct: 259 TPG-----ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 285 TCHMALSAKKVQ--VPGVWGPYYEVILPNTHLLESGQSATG----KLLDHI--INNH-PA 335
+ +L ++ + G P + +L S + ++ D++ N+H PA
Sbjct: 314 YPNTSLPPSILEDSLENNEGV------P-SPML----SISNLTQEQVQDYVNKTNSHLPA 362
Query: 336 TQSIMKKL-NT----------EELAPVIQYLNHV-----IDTQHSTELT---ADFHVW-- 374
+ + L N + L + L +D Q + F
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD-QSRIPFSERKLKFSNRFL 421
Query: 375 ----PDFHGNRSP-LADA------DMKGMICGLTLDSSETSL-VTLYLATIQALADVTKD 422
P FH S L A D+ ++ ++ + + + +Y T D
Sbjct: 422 PVASP-FH---SHLLVPASDLINKDLVKN--NVSFNAKD--IQIPVYD---------TFD 464
Query: 423 -VNPAQIKGVGVDATCSLVALDTNHQPLTISPTDTRHSTELTADFHVWPDF-HGNRSPLA 480
+ + G + + T T H+ DF G S L
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT----------HIL-DFGPGGASGLG 513
Query: 481 D-----VDMKG--MICGLTLDSSETSLV 501
D G +I TLD +
Sbjct: 514 VLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 32.7 bits (74), Expect = 0.44
Identities = 24/143 (16%), Positives = 40/143 (27%), Gaps = 51/143 (35%)
Query: 2 EY--LLSVDVGTSSVRAA--LVSTRGK---------------VSPIAVRP--IALWCPKP 40
EY L S+ S+ + +V RG IA+ P +A
Sbjct: 1766 EYAALASL-ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF--- 1821
Query: 41 QLYEQSSEDIWNSVCLAIRDVTKD----VN---PAQ---IKG--VGVDATCSLVALDTNH 88
S++ V + T VN Q G +D ++ L+
Sbjct: 1822 ------SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNV--LNFIK 1873
Query: 89 ------QPLTISPTGDDSRNVLL 105
L S + ++ L
Sbjct: 1874 LQKIDIIELQKSLSLEEVEGHLF 1896
Score = 32.3 bits (73), Expect = 0.53
Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 26/99 (26%)
Query: 447 QPLTISPTDTRHSTELTADFHV-----WPDFHGNRSPLADVDMKGMICGLTLD---SSET 498
+PLT+S H + F+ + G D ++
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTE--------GFAADDEPTTPA 58
Query: 499 SLVTLYLATIQALAYGTRHIMDAMHAAGKTPAISTLLVS 537
LV +L ++ + + L +
Sbjct: 59 ELVGKFLG----------YVSSLVEPSKVGQFDQVLNLC 87
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 3e-06
Identities = 73/454 (16%), Positives = 127/454 (27%), Gaps = 130/454 (28%)
Query: 160 FFDLPDFLTWKLTGDETQSLC--------SLVCKWTYDAYDRRWNEDYFEKIGLGDLKQN 211
D+ D L+ +E + +L WT + + + E++ L+ N
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV----LRIN 90
Query: 212 -GW--RAIGNTVKNPGQPIGHGVSTEVARALGLNPG-TPVSVSMIDAHAGAL--ALL-AT 264
+ I + P + + R N +VS + + L ALL
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELR 148
Query: 265 SAPGIPEDIDSKLGLICGTSTCHMALSA---KKVQVP---GV-W---GPYYEVILPNTHL 314
A + ID LG G + +AL KVQ + W P T +
Sbjct: 149 PAKNVL--IDGVLG--SGKTW--VALDVCLSYKVQCKMDFKIFWLNLKNCNS---PET-V 198
Query: 315 LESGQSATGKLLDHIINNHPATQSIMK--KLNTEELAPVIQYLNHVIDTQHSTELTA-DF 371
LE Q KLL I N + KL + ++ L + + L
Sbjct: 199 LEMLQ----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCLLVLL- 251
Query: 372 HVWP-------DFH-------GNRSPLADA---------DMKGMICGLTLDSSETSLVTL 408
+V + + + D + LT D + SL+
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVK-SLLLK 309
Query: 409 YLAT-IQALADVTKDVNPAQIKGVG-----------------VDATCSLVALDTNHQPLT 450
YL Q L NP ++ + D +++ N
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--- 366
Query: 451 ISPTDTRHSTELTADFHVWPDFHGNRSPLADVD-MKGMICGLTLDSSET----------- 498
P + R + V+P ++ + D ++
Sbjct: 367 -EPAEYRKMFD---RLSVFPP---------SAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 499 -SLV-------TLYLATIQALAYGTRHIMDAMHA 524
SLV T+ + +I A+H
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
>2yhw_A Bifunctional UDP-N-acetylglucosamine
2-epimerase/N-acetylmannosamine kinase; transferase,
sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A
{Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Length = 343
Score = 38.2 bits (89), Expect = 0.006
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALW-CPKPQLYEQSSEDIWNSVCLAIRDV 61
L+VD+G +++R A+VS +G++ + + P+ YE+ I A +
Sbjct: 31 SALAVDLGGTNLRVAIVSMKGEI-------VKKYTQFNPKTYEERINLILQMCVEAAAEA 83
Query: 62 TKDVNPAQIKGVGV 75
K +I GVG+
Sbjct: 84 VKL--NCRILGVGI 95
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A
{Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Length = 321
Score = 35.6 bits (83), Expect = 0.033
Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRD 60
M + VD+G + + A +V G++ ++E I +++C A+
Sbjct: 1 MGLTIGVDIGGTKIAAGVVDEEGRILSTFKVAT----------PPTAEGIVDAICAAVAG 50
Query: 61 VTKDVNPAQIKGVGV 75
++ ++ VG+
Sbjct: 51 ASEG---HDVEAVGI 62
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix,
structural PSI-2, protein structure initiative; HET:
MSE; 2.02A {Enterococcus faecalis}
Length = 326
Score = 35.3 bits (82), Expect = 0.048
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 1 ME-YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIR 59
M+ ++ +D+G ++++ A+++T G V + + + I S+ +IR
Sbjct: 4 MDKKIIGIDLGGTTIKFAILTTDGVVQQKWSIETNI--------LEDGKHIVPSIIESIR 55
Query: 60 DVTKDVN--PAQIKGVGVDA 77
N G+G+
Sbjct: 56 HRIDLYNMKKEDFVGIGMGT 75
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein
structure initiative, midwest center for structural
genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP:
a.4.5.63 c.55.1.10 c.55.1.10
Length = 429
Score = 33.8 bits (78), Expect = 0.15
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 11/75 (14%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
LS+ +G + AL G+V I E +D+ + I +
Sbjct: 109 QFLSMRLGRGYLTIALHELGGEVLIDTKIDIH---------EIDQDDVLARLLFEIEEFF 159
Query: 63 KD--VNPAQIKGVGV 75
+ ++ + +
Sbjct: 160 QTYAAQLDRVTSIAI 174
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23,
struc genomics, PSI, protein structure initiative;
2.20A {Chromobacterium violaceum} SCOP: c.55.1.5
c.55.1.5
Length = 305
Score = 32.9 bits (75), Expect = 0.27
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRD 60
+ YL+ VD G + R L ++ G +A + Q W +V +
Sbjct: 10 IRYLIGVDGGGTGTRIRLHASDGTPLAMAEGGASALS-------QGIAKSWQAVLSTLEA 62
Query: 61 VTKDVNPAQIKGVGVDATCSLVALDTNHQP 90
+ A + A + L H
Sbjct: 63 AFQQ---AGLPAAPASACAIGLGLSGVHNR 89
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of
allergy and infectious diseases, niaid, hydrolase, struc
genomics; 1.76A {Salmonella typhimurium LT2} PDB: 1mzg_A
Length = 141
Score = 31.4 bits (71), Expect = 0.29
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 14/104 (13%)
Query: 131 GKISPEMETPKLLWLKKNLPDTCWRRAGLFFDLPDFLTWKLTGDETQS--------LCSL 182
G+ E+ +N C + + +L GD + + L
Sbjct: 34 GQRLAEL--NPQDRNPQNTIHGCQSQVWIVMRRNANGIIELQGDSDAAIVKGLMAVVFIL 91
Query: 183 VCKWTYDAYDRRWNEDYFEKIGLGDL----KQNGWRAIGNTVKN 222
+ T +FEK+ L + G A+ ++
Sbjct: 92 YHQMTAQDIVHFDVRPWFEKMALAQHLTPSRSQGLEAMIRAIRA 135
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA
binding P helix-turn-helix, phosphotransferase system;
2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10
c.55.1.10 PDB: 3bp8_A
Length = 406
Score = 32.6 bits (75), Expect = 0.31
Identities = 8/75 (10%), Positives = 23/75 (30%), Gaps = 11/75 (14%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
+ LS+ + + AL K+ + +AL + + + + I
Sbjct: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELAL---------KDDLPLLDRIISHIDQFF 136
Query: 63 KD--VNPAQIKGVGV 75
++ + +
Sbjct: 137 IRHQKKLERLTSIAI 151
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.65A {Cytophaga hutchinsonii}
Length = 321
Score = 32.2 bits (74), Expect = 0.41
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALW-CPKPQLYEQSSEDIWNSVCLAIRDV 61
+L +DVG +SV+ LV+ G++ + S+ L I +
Sbjct: 20 MILGIDVGGTSVKFGLVTPEGEI-------QNATRFMTAD--WVNGIGFVESMKLEIGNF 70
Query: 62 TKDVNPAQIKGVGV 75
K +KGVG+
Sbjct: 71 LKQYP--IVKGVGI 82
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily,
ribonuc fold, sugar kinase, glucose, phosphoryl
transfer, transferase; HET: BGC; 1.65A {Sulfolobus
tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Length = 299
Score = 32.1 bits (73), Expect = 0.43
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRGKV 25
M ++ VD G + +A G
Sbjct: 1 MMIIVGVDAGGTKTKAVAYDCEGNF 25
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 31.8 bits (73), Expect = 0.50
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 226 PIGHGVSTEVARALGLNPGTPVSVSMIDAHA---GALALLATS 265
V ++A+ LGL P + D A L+L+ +
Sbjct: 206 DNAGAVRADLAKRLGLAD-RPQWHNQRDGIAEFANLLSLVTGT 247
>3mcp_A Glucokinase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
transferase; 3.00A {Parabacteroides distasonis}
Length = 366
Score = 31.6 bits (72), Expect = 0.64
Identities = 6/73 (8%), Positives = 24/73 (32%), Gaps = 10/73 (13%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
++++D G ++ + + +++ V P L + ++ + +
Sbjct: 10 IVMTLDAGGTNFVFSAIQGGKEIADPVVLP----ACADCL-----DKCLGNLVEGFKAIQ 60
Query: 63 KDVNPAQIKGVGV 75
+ P +
Sbjct: 61 AGL-PEAPVAISF 72
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET:
BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Length = 267
Score = 30.4 bits (69), Expect = 1.3
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 1 MEYLLSVDVGTSSVRAALVST-RGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIR 59
L+ +D+G + ++ +V +GK+ R P PQ + E + +V L +
Sbjct: 11 NAPLIGIDIGGTGIKGGIVDLKKGKLLGERFR-----VPTPQ--PATPESVAEAVALVVA 63
Query: 60 DVTKDVN-PAQIKGVGV 75
+++ PA VGV
Sbjct: 64 ELSARPEAPAAGSPVGV 80
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2,
protein structure initiative, joint center structural
genomics, JCSG; 2.46A {Thermotoga maritima} SCOP:
a.4.5.63 c.55.1.10 c.55.1.10
Length = 380
Score = 30.3 bits (69), Expect = 1.5
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y+L ++V + A L+ + P+ + E+ N + I
Sbjct: 88 YVLGIEVTRDEIAACLIDASMNILAHEAHPLPS--------QSDREETLNVMYRIIDRAK 139
Query: 63 K--DVNPAQIKGVGV 75
+ +++ + V
Sbjct: 140 DMMEKLGSKLSALTV 154
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics,
joint CEN structural genomics, JCSG, protein structure
initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Length = 310
Score = 29.9 bits (68), Expect = 2.4
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
+ VD+G + +R L + G+ + A E + + + + I +
Sbjct: 8 VVAGVDMGATHIRFCLRTAEGETLHCEKKRTA---------EVIAPGLVSGIGEMIDEQL 58
Query: 63 KDVNPAQIKGVGV 75
+ N A+ G+ +
Sbjct: 59 RRFN-ARCHGLVM 70
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral
protein; HET: CIT; 1.67A {Sulfolobus islandicus
rudivirus 1 variorganism_taxid}
Length = 100
Score = 27.8 bits (61), Expect = 2.9
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 220 VKNPGQPIGHGVSTEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGL 279
+ P + I G +VARAL G P V+MI+ G A ++ P +D+ +
Sbjct: 24 ITGPNRAIYQGFGLKVARALNRLGGGPALVNMIN---GLKAYYISAFNANPTVLDAVTDI 80
Query: 280 ICGTSTCHMA 289
I G+ T +++
Sbjct: 81 ITGSPTGYVS 90
>3eet_A Putative GNTR-family transcriptional regulator; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Streptomyces avermitilis}
Length = 272
Score = 29.3 bits (66), Expect = 3.4
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 232 STEVARALGLNPGTPV 247
S +A L + PG V
Sbjct: 139 SGAIAERLDIRPGERV 154
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin
secretion; HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 29.4 bits (66), Expect = 3.4
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 4 LLSVDVGTSSVRAALVS-TRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
L +++G S+++ VS + +A RP P L E + ++ I+++
Sbjct: 15 ALGLEIGASALKLVEVSGNPPALKALASRPT----PPGLLMEGMVAEP-AALAQEIKELL 69
Query: 63 KDVNPAQIKGVGV 75
+ + + V
Sbjct: 70 LEAR-TRKRYVVT 81
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar
kinase, RIBO H fold, sugar kinase/HSP70/actin
superfamily, domain rotati conformation; HET: NAG NDG;
1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB:
2ch6_A*
Length = 347
Score = 29.2 bits (65), Expect = 3.5
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKV 25
V+ G + LVS GK+
Sbjct: 6 AIYGGVEGGGTRSEVLLVSEDGKI 29
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4,
AP sucrose, structural genomics, PSI; HET: SUC; 2.01A
{Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Length = 292
Score = 29.0 bits (66), Expect = 3.8
Identities = 7/73 (9%), Positives = 26/73 (35%), Gaps = 17/73 (23%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
+ ++D+G + ++ A ++ GK+ + S+ + + +
Sbjct: 5 TIATIDIGGTGIKFASLTPDGKI-------LDKT-------SISTPENLEDLLAWLDQR- 49
Query: 63 KDVNPAQIKGVGV 75
++ G+ +
Sbjct: 50 --LSEQDYSGIAM 60
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A
{Vibrio vulnificus}
Length = 648
Score = 29.5 bits (66), Expect = 4.0
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 21/107 (19%)
Query: 104 LLWMDHRAVSEAD--QINATKHSVLDTVGGKISPEMETPKLLWLKKNLPDTCWRRAGLFF 161
+L ++HRA +E +I + ++ T P ++ L + L D + LF
Sbjct: 422 VLTLEHRAWAEQTSLRIYYELNRLMSTKNRFHRPILDE-----LSERLADKFFVNFSLFQ 476
Query: 162 DLPDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDL 208
LPD +W + D+ + L + + D+
Sbjct: 477 SLPD--SWGI--DQVFPVLPL----------SGLQNAADRRAVMLDI 509
>3cnv_A Putative GNTR-family transcriptional regulator; structural
genomics, bordet bronchiseptica, PSI-2, protein
structure initiative; HET: MSE FLC; 2.00A {Bordetella
bronchiseptica RB50} SCOP: d.190.1.2
Length = 162
Score = 28.0 bits (63), Expect = 4.6
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 232 STEVARALGLNPGTPV 247
E+ARAL L G V
Sbjct: 32 PAEIARALELRAGETV 47
>3ddv_A Transcriptional regulator (GNTR family); structure genomics, MCSG,
structural genomics, protein structure initiative; 2.65A
{Enterococcus faecalis} SCOP: d.190.1.2
Length = 145
Score = 28.0 bits (63), Expect = 4.7
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 232 STEVARALGLNPGTPV 247
S+ L L P +
Sbjct: 19 SSSEMEKLQLGPEDSI 34
>2fa1_A Probable transcriptional regulator PHNF; PNHF, APC5558, effector
binding DO PSI, protein structure initiative, MCSG; HET:
BDF; 1.70A {Escherichia coli} SCOP: d.190.1.2
Length = 160
Score = 28.0 bits (63), Expect = 5.4
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 232 STEVARALGLNPGTPV 247
S VA ALG+ G V
Sbjct: 33 SGHVADALGITEGENV 48
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar
methabolism, structural genomics, PSI, protein
structure initiative; 2.20A {Escherichia coli} SCOP:
c.55.1.10 c.55.1.10
Length = 289
Score = 28.3 bits (64), Expect = 5.7
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 15/74 (20%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALW-CPKPQLYEQSSEDIWNSVCLAIRDV 61
L++D+G + + AAL+ G++ P P Q+ E + +++ + +
Sbjct: 2 TTLAIDIGGTKLAAALIGADGQI-------RDRRELPTPA--SQTPEALRDALSALVSPL 52
Query: 62 TKDVNPAQIKGVGV 75
A + V +
Sbjct: 53 Q-----AHAQRVAI 61
>2p19_A Transcriptional regulator; bacterial regulatory protein, GNTR
family, MCSG, structural PSI-2, protein structure
initiative; 2.10A {Corynebacterium glutamicum} SCOP:
d.190.1.2
Length = 149
Score = 27.6 bits (62), Expect = 6.0
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 232 STEVARALGLNPGTPV 247
S+ +A LG++ G V
Sbjct: 21 SSAIAEKLGVSAGDEV 36
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural
GE PSI-2, protein structure initiative, midwest center
for STR genomics, MCSG; 2.09A {Listeria innocua}
Length = 236
Score = 28.4 bits (64), Expect = 6.0
Identities = 9/67 (13%), Positives = 17/67 (25%), Gaps = 12/67 (17%)
Query: 190 AYDRRW-NEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVST--------EVARALG 240
DR + + D + + V + + E + +
Sbjct: 139 TLDRLILPLGLYPDLQAKDFQIINIIEL---VNSGKYKLFELEQELQLILAGNEQIKNMH 195
Query: 241 LNPGTPV 247
LN PV
Sbjct: 196 LNENDPV 202
>3hfi_A Putative regulator; structural geonomics, PSI, MCSG, structural
genom protein structure initiative, midwest center for
structural genomics; 2.20A {Escherichia coli O6}
Length = 170
Score = 27.7 bits (62), Expect = 6.6
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 232 STEVARALGLNPGTPV 247
+ VA L + PG +
Sbjct: 37 NRYVAEKLRITPGQDI 52
>3f8l_A HTH-type transcriptional repressor PHNF; GNTR, HUTC, regulator,
UTRA, DNA-bindin transcription regulation; 1.90A
{Mycobacterium smegmatis}
Length = 201
Score = 27.7 bits (62), Expect = 7.6
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 232 STEVARALGLNPGTPV 247
+A LG++ G PV
Sbjct: 66 DEVLAGVLGVDVGAPV 81
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 28.4 bits (64), Expect = 7.8
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 226 PIGHGVSTEVARALGLNPGTPVSVSMIDAHA---GALALLATSAPGIPEDI 273
G V E+AR L L + S DA A LAL++ S + DI
Sbjct: 202 TRGLDVQRELARELNLGVPSITWHSARDAVAETVQFLALVSGSLGKLAMDI 252
>2ikk_A Hypothetical transcriptional regulator YURK; APC85442, bacillus
subtilis subsp. subtilis STR. 168, structural genomics,
PSI-2; 1.80A {Bacillus subtilis} SCOP: d.190.1.2
Length = 173
Score = 27.7 bits (62), Expect = 7.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 232 STEVARALGLNPGTPV 247
S +A L + P +PV
Sbjct: 43 SKPIAEKLQIQPESPV 58
>3lm2_A Putative kinase; structural genomics, joint center for struc
genomics, JCSG, protein structure initiative, PSI-2,
transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Length = 226
Score = 27.8 bits (62), Expect = 7.9
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKV 25
+ +L++D+G S V+ L + +
Sbjct: 6 QTVLAIDIGGSHVKIGLSTDGEER 29
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged
helix-TUR UTRA, DNA-binding, transcription regulation;
1.80A {Mycobacterium smegmatis}
Length = 248
Score = 28.0 bits (63), Expect = 8.3
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 232 STEVARALGLNPGTPV 247
+A LG++ G PV
Sbjct: 113 DEVLAGVLGVDVGAPV 128
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding,
transcription regulation, transcriptional regulator,
GNTR/HUTC family; 2.40A {Bacillus subtilis}
Length = 243
Score = 28.0 bits (63), Expect = 8.4
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 232 STEVARALGLNPGTPV 247
+ E+A LG + +
Sbjct: 113 TEELAAILGCGHPSSI 128
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold,
metal binding protein; HET: ADP; 3.00A {Acidaminococcus
fermentans} SCOP: c.55.1.5
Length = 270
Score = 27.9 bits (62), Expect = 8.4
Identities = 6/39 (15%), Positives = 16/39 (41%)
Query: 525 AGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQE 563
A + + ++++GG+A+N + G +
Sbjct: 203 ANRVGIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPL 241
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain,
structural genomics, PSI-2, protein structure
initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3}
SCOP: d.190.1.2
Length = 247
Score = 28.0 bits (63), Expect = 8.6
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 231 VSTEVARALGLNPGTPV 247
+ E+A ALG+ + V
Sbjct: 117 ATAEIAAALGVAEDSEV 133
>3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.55A {Sinorhizobium meliloti}
Length = 330
Score = 27.8 bits (61), Expect = 8.9
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQ 45
Y +VD GTSS R ++ G V + +
Sbjct: 7 GYYAAVDWGTSSFRLWIIGEDGAVLAERRSAEGMTTAAKTGFHT 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.408
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,562,705
Number of extensions: 518303
Number of successful extensions: 1196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1090
Number of HSP's successfully gapped: 100
Length of query: 564
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 465
Effective length of database: 3,937,614
Effective search space: 1830990510
Effective search space used: 1830990510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)