RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10531
(564 letters)
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli
[TaxId: 562]}
Length = 252
Score = 114 bits (285), Expect = 3e-29
Identities = 47/268 (17%), Positives = 93/268 (34%), Gaps = 32/268 (11%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y++++D GT+S RA ++ + ++ R PKP E +IW + + +V
Sbjct: 4 YIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVL 63
Query: 63 K--DVNPAQIKGVGVDATC-SLVALDTNH-QPLTISPTGDDSRNVLLWMDHRAVSEADQI 118
D++ QI +G+ + + + +P+ N ++W R + +
Sbjct: 64 AKADISSDQIAAIGITNQRETTIVWEKETGKPI---------YNAIVWQCRRTAEICEHL 114
Query: 119 NATKHS--VLDTVGGKISPEMETPKLLWLKKNLPDTCWR--RAGLFFDLPD-FLTWKLTG 173
+ G I P K+ W+ ++ + R R L F D +L WK+T
Sbjct: 115 KRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQ 174
Query: 174 DETQSLCSLVCKWT--YDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGV 231
T ++ + W++ E + + R + V+ + G
Sbjct: 175 GRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDI-------PREMLPEVRRSSEVYGQ-- 225
Query: 232 STEVARALGLNPGTPVSVSMIDAHAGAL 259
P+S D A
Sbjct: 226 ---TNIDGKGGTRIPISGIAGDQQAALF 250
>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 252
Score = 113 bits (284), Expect = 5e-29
Identities = 54/271 (19%), Positives = 98/271 (36%), Gaps = 30/271 (11%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y++++D GT+S RA + GK + + + PK E ++ +IWNSV I
Sbjct: 2 YVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAF 61
Query: 63 KDVNPAQIKGVGVDAT---CSLVALDTNHQPLTISPTGDDSRNVLLWMDHRAVSEADQIN 119
+ G+ T + V D TG N ++W ++ ADQ+
Sbjct: 62 IESGIRPEAIAGIGITNQRETTVVWDKT--------TGQPIANAIVWQSRQSSPIADQLK 113
Query: 120 ATKHS--VLDTVGGKISPEMETPKLLWLKKNLPDTCWRRA---GLFFDLPDFLTWKLTGD 174
H+ + + G I K+ WL N+ + LF + +L WKLT
Sbjct: 114 VDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDG 173
Query: 175 ETQSLCSLVCKWT--YDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGVS 232
+ T Y+ + W+++ + + + ++ VK+ + GH
Sbjct: 174 QVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIP-------SSMLPEVKSNSEVYGH--- 223
Query: 233 TEVARALGLNPGTPVSVSMIDAHAGALALLA 263
P++ D A +A
Sbjct: 224 --TRSYHFYGSEVPIAGMAGDQQAALFGQMA 252
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase
CV2896 {Chromobacterium violaceum [TaxId: 536]}
Length = 114
Score = 50.8 bits (121), Expect = 2e-08
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 9/77 (11%)
Query: 1 MEYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRD 60
+ YL+ VD G + R L ++ G +A+ Q W +V +
Sbjct: 3 IRYLIGVDGGGTGTRIRLHASDGTP-------LAMAEGGASALSQGIAKSWQAVLSTLEA 55
Query: 61 VTKDVN--PAQIKGVGV 75
+ A +
Sbjct: 56 AFQQAGLPAAPASACAI 72
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase
{Thermotoga maritima [TaxId: 2336]}
Length = 128
Score = 32.9 bits (74), Expect = 0.030
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
Y+L ++V + A L+ + + A P E++ ++ + A +
Sbjct: 5 YVLGIEVTRDEIAACLIDASMNI----LAHEAHPLPSQSDREETLNVMYRIIDRAKDMME 60
Query: 63 KDVNPAQIKGVGVDATCSL 81
K +++ + V A +
Sbjct: 61 KL--GSKLSALTVAAPGPI 77
>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK
{Escherichia coli [TaxId: 562]}
Length = 119
Score = 28.6 bits (63), Expect = 0.76
Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 9/103 (8%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
L++D+G + + AAL+ G+ I P Q+ E + +++ + +
Sbjct: 2 TTLAIDIGGTKLAAALIGADGQ--------IRDRRELPTPASQTPEALRDALSALVSPLQ 53
Query: 63 KDVNPAQIKGVG-VDATCSLVALDTNHQPLTISPTGDDSRNVL 104
I G + L N L P +
Sbjct: 54 AHAQRVAIASTGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLT 96
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia
coli [TaxId: 562]}
Length = 143
Score = 28.8 bits (64), Expect = 0.84
Identities = 2/21 (9%), Positives = 5/21 (23%)
Query: 326 LDHIINNHPATQSIMKKLNTE 346
+ + + L E
Sbjct: 11 MGSLFQQVAQKTGVSNTLENE 31
>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli
[TaxId: 562]}
Length = 129
Score = 27.7 bits (60), Expect = 2.1
Identities = 7/73 (9%), Positives = 19/73 (26%), Gaps = 9/73 (12%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
+ LS+ + + AL K+ +L + + + + I
Sbjct: 5 HYLSLRISRGEIFLALRDLSSKLV---------VEESQELALKDDLPLLDRIISHIDQFF 55
Query: 63 KDVNPAQIKGVGV 75
+ +
Sbjct: 56 IRHQKKLERLTSI 68
>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007
{Vibrio cholerae [TaxId: 666]}
Length = 128
Score = 27.5 bits (60), Expect = 2.2
Identities = 14/108 (12%), Positives = 32/108 (29%), Gaps = 9/108 (8%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVT 62
LS+ +G + AL G+V L K ++E +D+ + I +
Sbjct: 5 QFLSMRLGRGYLTIALHELGGEV---------LIDTKIDIHEIDQDDVLARLLFEIEEFF 55
Query: 63 KDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHR 110
+ + + T + L + + + +
Sbjct: 56 QTYAAQLDRVTSIAITLPGLVNSEQGIVLQMPHYNVKNLALGPEIYKA 103
>d1g73a_ a.7.4.1 (A:) Smac/diablo {Human (Homo sapiens) [TaxId:
9606]}
Length = 157
Score = 27.9 bits (62), Expect = 2.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 394 CGLTLDSSETSLVTLYLATIQALADVTKDVN 424
L DS+ T L A I+A+ + TK V
Sbjct: 23 VSLVTDSTSTDLSQTTYALIEAITEYTKAVY 53
>d1t8ta_ c.37.1.5 (A:) Heparan sulfate glucosamine
3-O-sulfotransferase 3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 28.4 bits (62), Expect = 2.3
Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 309 LPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLN------TEELAPVIQYLNHVIDTQ 362
LP ++ + T L + HP +++ + + + LA + +D Q
Sbjct: 17 LPQAIIIGVKKGGTR-ALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYRDLMPRTLDGQ 75
Query: 363 HSTELTADFHVWPDFHGNRSPLADADMKGMICGLTLD 399
+ E T + V + S ++ ++ +
Sbjct: 76 ITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVT 112
>d1vpha_ d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 138
Score = 27.6 bits (61), Expect = 2.4
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Query: 449 LTISPTDTRHSTELTADFHVWPDFHGNRSPLADVDMKGMICGLTLDSSETSLVTLYLATI 508
+ +S ++T + G ++ + + + + + E L+ L I
Sbjct: 9 IYVSTARQFELVDITDQVEQIVEKSGIKNGICLIFVAHSTAAIVANEHERGLMEDILTKI 68
Query: 509 QALAYGTR-----HIMDAMHAAGKT 528
+ +R I D HA
Sbjct: 69 KEFTEPSRSWKHNLIDDNAHAHLGA 93
>d3cnva1 d.190.1.2 (A:98-259) Putative transcriptional regulator
BB3683 {Bordetella bronchiseptica [TaxId: 518]}
Length = 162
Score = 27.8 bits (61), Expect = 2.5
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 164 PDFLTWKLTGDETQSLCSLVCKWTYDAY-----DRRWNEDYFEKIGLGDLKQNGWRAIGN 218
P + L +++ ++ + + + D +F + L L + G
Sbjct: 32 PAEIARALELRAGETVVTIRRQLSMNHMPTVIDDLWLPGTHFRGLTLELLTASKAPLYGL 91
Query: 219 TVKNPGQPIGHG--------VSTEVARALGLNPGTPV 247
G + S E+A LG+ PG P+
Sbjct: 92 FESEFGVSMVRADEKLRAVAASPEIAPLLGVEPGRPL 128
>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli
[TaxId: 562]}
Length = 319
Score = 27.9 bits (60), Expect = 3.0
Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 15/109 (13%)
Query: 2 EYLLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDV 61
+Y L DVG ++ R AL Y S+ IR
Sbjct: 1 KYALVGDVGGTNARLALCDIASGE------ISQAKTYSGLDYP--------SLEAVIRVY 46
Query: 62 TKDVNPAQIKGVGVDATCSLVALDTNHQPLTISPTGDDSRNVLLWMDHR 110
++ ++K + C + T + + + + L +
Sbjct: 47 LEEHK-VEVKDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLE 94
>d2ra5a1 d.190.1.2 (A:66-245) Putative transcriptional regulator
SCO6256 {Streptomyces coelicolor [TaxId: 1902]}
Length = 180
Score = 27.4 bits (60), Expect = 3.2
Identities = 11/93 (11%), Positives = 24/93 (25%), Gaps = 9/93 (9%)
Query: 164 PDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYF-EKIGLGDLKQNGWRAIGNTVKN 222
+ L E + + + +Y + D Q + ++
Sbjct: 51 TAEIAAALGVAEDSEVHRIERLRLTHGEPMAYLCNYLPPGLVDLDTGQLEATGLYRLMRA 110
Query: 223 PGQPIGHGVST--------EVARALGLNPGTPV 247
G + + A LG + G P+
Sbjct: 111 AGITLHSARQSIGARAATSGEAERLGEDAGAPL 143
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus
abyssi [TaxId: 29292]}
Length = 437
Score = 27.9 bits (60), Expect = 3.5
Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 8/126 (6%)
Query: 164 PDFLTWKLTGDETQSLCSLVCKWTYDAYDRRWNEDYFEKIGLGDLKQNGWRAIGNTVKNP 223
F+ + + L+ + + + E F IG GD + GW
Sbjct: 250 VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGN 309
Query: 224 GQPIGHGVSTEVARALGLNP--------GTPVSVSMIDAHAGALALLATSAPGIPEDIDS 275
+ I +S E R L + P + ++A +A++ G+ + I +
Sbjct: 310 VKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN 369
Query: 276 KLGLIC 281
+ G++
Sbjct: 370 ETGILV 375
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 27.5 bits (60), Expect = 3.6
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 525 AGKTPAISTLLVSGGLAKNPLYVQTHADVTGCNVLCPQ 562
A + + ++++GG+A+N + G +
Sbjct: 202 ANRVGIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSP 239
>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus
subtilis [TaxId: 1423]}
Length = 118
Score = 26.6 bits (58), Expect = 4.3
Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 18/93 (19%)
Query: 4 LLSVDVGTSSVRAALVSTRGKVSPIAVRPIALWCPKPQLYEQSSEDIWNSVCLAIRDVTK 63
L ++ G + A+ G + I P I V +
Sbjct: 2 LGGIEAGGTKFVCAVGREDGTI--IDRIEFPTKMPDE----------------TIEKVIQ 43
Query: 64 DVNPAQIKGVGVDATCSLVALDTNHQPLTISPT 96
+ ++ +G+ + + T+ TI+ T
Sbjct: 44 YFSQFSLQAIGIGSFGPVDNDKTSQTYGTITAT 76
>d2pkha1 d.190.1.2 (A:109-249) Histidine utilization repressor HutC
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 141
Score = 26.6 bits (58), Expect = 5.0
Identities = 19/141 (13%), Positives = 35/141 (24%), Gaps = 27/141 (19%)
Query: 232 STEVARALGLNPGTPVSVSMIDAHAGALALLATSAPGIPEDIDSKLGLICGTSTCHMALS 291
+E A AL + G V S+I IP + + ++
Sbjct: 15 GSERALALDMREGQRVFHSLI----------VHFENDIP--------VQIEDRFVNAQVA 56
Query: 292 AKKVQVPGVWGPYYEVILPNTHLLESGQSATGKLLDHIINNHPATQSIMKKLNTEELAPV 351
++ Y + L E +H++ A K L + P
Sbjct: 57 PDYLKQDFTLQTPYAYLSQVAPLTEG---------EHVVEAILAEADECKLLQIDAGEPC 107
Query: 352 IQYLNHVIDTQHSTELTADFH 372
+ + H
Sbjct: 108 LLIRRRTWSGRQPVTAARLIH 128
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 114
Score = 26.1 bits (57), Expect = 5.5
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 3 YLLSVDVGTSSVRAALVSTRGKV 25
+ ++D+G + ++ A ++ GK+
Sbjct: 2 TIATIDIGGTGIKFASLTPDGKI 24
>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A
{Staphylococcus aureus [TaxId: 1280]}
Length = 242
Score = 26.9 bits (58), Expect = 6.0
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 196 NEDYFEKIGLGDLKQNGWRAIGNTVKNPGQPIGHGV 231
++ F K+ D ++ + IG V GQ GV
Sbjct: 26 PKELFSKVDEKDRQKYPYNTIG-NVFVKGQTSATGV 60
>d3bwga2 d.190.1.2 (A:89-233) Transcriptional regulator YydK
{Bacillus subtilis [TaxId: 1423]}
Length = 145
Score = 25.8 bits (56), Expect = 8.8
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 232 STEVARALGLNPGTPV 247
+ E A L + +
Sbjct: 17 TPEAAENLNIGMDEDI 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.408
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,058,730
Number of extensions: 93674
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 25
Length of query: 564
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 474
Effective length of database: 1,171,896
Effective search space: 555478704
Effective search space used: 555478704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)