BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10532
(346 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q26630|IDLC_STRPU 33 kDa inner dynein arm light chain, axonemal OS=Strongylocentrotus
purpuratus PE=1 SV=1
Length = 260
Score = 167 bits (424), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 87/143 (60%), Positives = 99/143 (69%), Gaps = 31/143 (21%)
Query: 154 HTGKLY--KVSSDPATRLEVIKLNEQLDTRLQQRQARETGICPVRRELFTQCFDELIRQA 211
+G+L+ +VSS PATRL+V+ L EQLD RLQQRQARETGICPVRREL++QCFDELIRQ
Sbjct: 81 ESGQLWVQQVSSTPATRLDVVNLQEQLDMRLQQRQARETGICPVRRELYSQCFDELIRQV 140
Query: 212 AINCGERGLLLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQVCSGHVGVQGVSSFNKKS 271
I C ERGLLLLRVRDE R TIA YQ+LYESS+AFGMRKALQ
Sbjct: 141 TIECAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGMRKALQ------------------ 182
Query: 272 LNMKSKEGQDIAEQGKFDMEEEI 294
AEQGK DME++I
Sbjct: 183 -----------AEQGKSDMEKKI 194
>sp|O14645|IDLC_HUMAN Axonemal dynein light intermediate polypeptide 1 OS=Homo sapiens
GN=DNALI1 PE=2 SV=2
Length = 258
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/140 (59%), Positives = 96/140 (68%), Gaps = 29/140 (20%)
Query: 158 LYKVSSDPATRLEVIKLNEQLDTRLQQRQARETGICPVRRELFTQCFDELIRQAAINCGE 217
+ +VSS P+TR++V+ L EQLD +LQQRQARETGICPVRREL++QCFDELIR+ INC E
Sbjct: 86 IQQVSSTPSTRMDVVHLQEQLDLKLQQRQARETGICPVRRELYSQCFDELIREVTINCAE 145
Query: 218 RGLLLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQVCSGHVGVQGVSSFNKKSLNMKSK 277
RGLLLLRVRDE R TIA YQ+LYESS+AFGMRKALQ
Sbjct: 146 RGLLLLRVRDEIRMTIAAYQTLYESSVAFGMRKALQ------------------------ 181
Query: 278 EGQDIAEQGKFDMEEEIERL 297
AEQGK DME +I L
Sbjct: 182 -----AEQGKSDMERKIAEL 196
>sp|Q4R3K5|IDLC_MACFA Axonemal dynein light intermediate polypeptide 1 OS=Macaca
fascicularis GN=DNALI1 PE=2 SV=1
Length = 258
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/140 (59%), Positives = 96/140 (68%), Gaps = 29/140 (20%)
Query: 158 LYKVSSDPATRLEVIKLNEQLDTRLQQRQARETGICPVRRELFTQCFDELIRQAAINCGE 217
+ +VSS P+TR++V+ L EQLD +LQQRQARETGICPVRREL++QCFDELIR+ INC E
Sbjct: 86 IQQVSSTPSTRMDVVHLQEQLDLKLQQRQARETGICPVRRELYSQCFDELIREVTINCAE 145
Query: 218 RGLLLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQVCSGHVGVQGVSSFNKKSLNMKSK 277
RGLLLLRVRDE R TIA YQ+LYESS+AFGMRKALQ
Sbjct: 146 RGLLLLRVRDEIRMTIAAYQTLYESSVAFGMRKALQ------------------------ 181
Query: 278 EGQDIAEQGKFDMEEEIERL 297
AEQGK DME +I L
Sbjct: 182 -----AEQGKSDMERKIAEL 196
>sp|Q4FZV3|IDLC_RAT Axonemal dynein light intermediate polypeptide 1 OS=Rattus
norvegicus GN=Dnali1 PE=2 SV=1
Length = 258
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/140 (59%), Positives = 96/140 (68%), Gaps = 29/140 (20%)
Query: 158 LYKVSSDPATRLEVIKLNEQLDTRLQQRQARETGICPVRRELFTQCFDELIRQAAINCGE 217
+ +VSS P+TR++V+ L EQLD +LQQRQARETGICPVRREL++QCFDELIR+ INC E
Sbjct: 86 IQQVSSTPSTRMDVVHLQEQLDLKLQQRQARETGICPVRRELYSQCFDELIREVTINCAE 145
Query: 218 RGLLLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQVCSGHVGVQGVSSFNKKSLNMKSK 277
RGLLLLRVRDE R TIA YQ+LYESS+AFGMRKALQ
Sbjct: 146 RGLLLLRVRDEIRMTIAAYQTLYESSVAFGMRKALQ------------------------ 181
Query: 278 EGQDIAEQGKFDMEEEIERL 297
AEQGK DME +I L
Sbjct: 182 -----AEQGKSDMERKITEL 196
>sp|Q8BVN8|IDLC_MOUSE Axonemal dynein light intermediate polypeptide 1 OS=Mus musculus
GN=Dnali1 PE=2 SV=1
Length = 258
Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/140 (58%), Positives = 95/140 (67%), Gaps = 29/140 (20%)
Query: 158 LYKVSSDPATRLEVIKLNEQLDTRLQQRQARETGICPVRRELFTQCFDELIRQAAINCGE 217
+ +VSS P+TR++V+ L EQLD +LQQRQARETGICPVRREL++QCFDELIR+ INC E
Sbjct: 86 IQQVSSTPSTRMDVVHLQEQLDLKLQQRQARETGICPVRRELYSQCFDELIREVTINCAE 145
Query: 218 RGLLLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQVCSGHVGVQGVSSFNKKSLNMKSK 277
RGLLLLRVRDE TIA YQ+LYESS+AFGMRKALQ
Sbjct: 146 RGLLLLRVRDEIHMTIAAYQTLYESSVAFGMRKALQ------------------------ 181
Query: 278 EGQDIAEQGKFDMEEEIERL 297
AEQGK DME +I L
Sbjct: 182 -----AEQGKSDMERKITEL 196
>sp|Q39604|IDLC_CHLRE 28 kDa inner dynein arm light chain, axonemal OS=Chlamydomonas
reinhardtii GN=IDA4 PE=1 SV=1
Length = 253
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/97 (74%), Positives = 81/97 (83%)
Query: 161 VSSDPATRLEVIKLNEQLDTRLQQRQARETGICPVRRELFTQCFDELIRQAAINCGERGL 220
VSS PATRL+VI L E+LD +LQQRQARETGICP+R EL+ Q FDELIRQ INC ERGL
Sbjct: 73 VSSTPATRLDVINLQEKLDQQLQQRQARETGICPIREELYAQTFDELIRQVTINCAERGL 132
Query: 221 LLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQVCSG 257
LLLRVRDE R TIA YQ+LYES++AFG+RKALQ G
Sbjct: 133 LLLRVRDEMRMTIAAYQTLYESAVAFGIRKALQTEQG 169
>sp|Q9VGG6|IDLC_DROME Putative inner dynein arm light chain, axonemal OS=Drosophila
melanogaster GN=CG6971 PE=2 SV=1
Length = 250
Score = 148 bits (373), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/104 (67%), Positives = 84/104 (80%), Gaps = 2/104 (1%)
Query: 153 DHTGKLYK--VSSDPATRLEVIKLNEQLDTRLQQRQARETGICPVRRELFTQCFDELIRQ 210
+ G+L++ VSS PATR +VI L E LDTRLQQ QARETGICPVRREL++QCFDE+IRQ
Sbjct: 71 EEDGQLWQQSVSSTPATRQDVINLQEMLDTRLQQTQARETGICPVRRELYSQCFDEIIRQ 130
Query: 211 AAINCGERGLLLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQV 254
INC ERGLLLLR+RDE ++ Y++LY SS+AFGMRKALQ
Sbjct: 131 VTINCSERGLLLLRIRDEIAMSMEAYETLYCSSVAFGMRKALQA 174
>sp|Q5T1B0|AXDN1_HUMAN Axonemal dynein light chain domain-containing protein 1 OS=Homo
sapiens GN=AXDND1 PE=2 SV=1
Length = 1012
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 26/127 (20%)
Query: 133 LEVYDDHTGKLYIRLLEVYDDHTGKLYKVSSDPATRLEVIKLNEQLDTRLQQ-------- 184
LE YDD Y LL D L S P R+EV +LN+ +DT L++
Sbjct: 189 LECYDDK----YTTLL--TDSENRLLLFPSMKPNKRVEVAQLNDVMDTMLERAGVENQEY 242
Query: 185 ----RQARETGICPVRRELFTQCFDELIRQAAINCGERGLLLLRVRDEF--------RQT 232
+ + I + ++ F ELIRQ +++C +RG LL +VR+ + RQ
Sbjct: 243 TGPTKMHKLLHILKKEQTIYNMIFHELIRQVSVDCADRGELLSKVRERYVQMLDQIARQM 302
Query: 233 IAGYQSL 239
I Y+ L
Sbjct: 303 IDFYKDL 309
>sp|Q95LP5|AXDN1_MACFA Axonemal dynein light chain domain-containing protein 1 OS=Macaca
fascicularis GN=AXDND1 PE=2 SV=2
Length = 855
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 26/127 (20%)
Query: 133 LEVYDDHTGKLYIRLLEVYDDHTGKLYKVSSDPATRLEVIKLNEQLDTRLQQ-------- 184
LE YDD Y LL D L S P R+EV +LN+ +DT L++
Sbjct: 188 LECYDDK----YTTLLT--DSENRLLLFPSMKPNKRVEVAQLNDVMDTMLERAGVENQEY 241
Query: 185 ----RQARETGICPVRRELFTQCFDELIRQAAINCGERGLLLLRVRDEF--------RQT 232
+ + I + ++ F ELIRQ +++C +RG LL +VR+ + RQ
Sbjct: 242 TGPTKMHKLLHILKKEQTIYNTIFHELIRQVSVDCADRGELLSKVRERYVQMLDQIARQM 301
Query: 233 IAGYQSL 239
I Y+ L
Sbjct: 302 IDFYKDL 308
>sp|Q3UZ57|AXDN1_MOUSE Axonemal dynein light chain domain-containing protein 1 OS=Mus
musculus GN=Axdnd1 PE=1 SV=1
Length = 424
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 12/81 (14%)
Query: 165 PATRLEVIKLNEQLDTRLQQRQ-ARETGICP---------VRRE--LFTQCFDELIRQAA 212
P R+EV++L+ +DT L++ E + P ++RE ++ F ELIRQ +
Sbjct: 3 PNKRVEVVQLSNVMDTMLERAGIENENYVGPTKMHQLLNVLKREQSIYNTVFHELIRQVS 62
Query: 213 INCGERGLLLLRVRDEFRQTI 233
++C +RG LL ++R+++ Q +
Sbjct: 63 VDCADRGELLSKIREKYVQML 83
>sp|Q5RFA3|AGT2_PONAB Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Pongo
abelii GN=AGXT2 PE=2 SV=1
Length = 514
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 27/120 (22%)
Query: 90 TPYSCNMGRNIFTTLLTILVDEWGYNLADKKQYVGTYILLEWL-----LEVYDDHTGKLY 144
P +C +G + +L ++ +E NL + Q VGTY+LL++ E+ D GK
Sbjct: 384 NPMACAIG----SAVLEVIKEE---NLQENSQEVGTYMLLQFAKLRDEFEIVGDVRGKGL 436
Query: 145 IRLLEVYDDHTGKLYKVSSDPATRLEVIKLNEQLDTRLQQRQARETGICPVRRELFTQCF 204
+ +E+ D K+S P R EV +++E + G+ R +F+Q F
Sbjct: 437 MIGIEMVQD------KISRRPLPREEVNQIHE---------DCKHMGLLVGRGSIFSQTF 481
>sp|Q9BYV1|AGT2_HUMAN Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo
sapiens GN=AGXT2 PE=1 SV=1
Length = 514
Score = 35.4 bits (80), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 27/120 (22%)
Query: 90 TPYSCNMGRNIFTTLLTILVDEWGYNLADKKQYVGTYILLEWL-----LEVYDDHTGKLY 144
P +C +G + +L ++ +E NL + Q VGTY+LL++ E+ D GK
Sbjct: 384 NPMACAIG----SAVLEVIKEE---NLQENSQEVGTYMLLKFAKLRDEFEIVGDVRGKGL 436
Query: 145 IRLLEVYDDHTGKLYKVSSDPATRLEVIKLNEQLDTRLQQRQARETGICPVRRELFTQCF 204
+ +E+ D K+S P R EV +++E + G+ R +F+Q F
Sbjct: 437 MIGIEMVQD------KISCRPLPREEVNQIHE---------DCKHMGLLVGRGSIFSQTF 481
>sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus Rp3/2004 GN=rep PE=3
SV=1
Length = 7071
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 229 FRQTIAGYQSLYESSIAFGMRKALQVCSGHVGVQG--VSSFNKKSLNMKSKEGQDIAEQG 286
F + Y Y + R + + SGH G+ G V + N+ L + S+E +I G
Sbjct: 406 FGGCVFAYVGCYNKRAYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVG 465
Query: 287 KFDMEEEIERLRGAYA 302
F + EE+ + +++
Sbjct: 466 DFQLNEEVAIILASFS 481
>sp|P0C6X7|R1AB_CVHSA Replicase polyprotein 1ab OS=Human SARS coronavirus GN=rep PE=1
SV=1
Length = 7073
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 229 FRQTIAGYQSLYESSIAFGMRKALQVCSGHVGVQG--VSSFNKKSLNMKSKEGQDIAEQG 286
F + Y Y + R + + SGH G+ G V + N+ L + S+E +I G
Sbjct: 406 FGGCVFAYVGCYNKRAYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVG 465
Query: 287 KFDMEEEIERLRGAYA 302
F + EE+ + +++
Sbjct: 466 DFHLNEEVAIILASFS 481
>sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus Rp3/2004 GN=1a PE=3
SV=1
Length = 4380
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 229 FRQTIAGYQSLYESSIAFGMRKALQVCSGHVGVQG--VSSFNKKSLNMKSKEGQDIAEQG 286
F + Y Y + R + + SGH G+ G V + N+ L + S+E +I G
Sbjct: 406 FGGCVFAYVGCYNKRAYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVG 465
Query: 287 KFDMEEEIERLRGAYA 302
F + EE+ + +++
Sbjct: 466 DFQLNEEVAIILASFS 481
>sp|P0C6U8|R1A_CVHSA Replicase polyprotein 1a OS=Human SARS coronavirus GN=1a PE=1 SV=1
Length = 4382
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 229 FRQTIAGYQSLYESSIAFGMRKALQVCSGHVGVQG--VSSFNKKSLNMKSKEGQDIAEQG 286
F + Y Y + R + + SGH G+ G V + N+ L + S+E +I G
Sbjct: 406 FGGCVFAYVGCYNKRAYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVG 465
Query: 287 KFDMEEEIERLRGAYA 302
F + EE+ + +++
Sbjct: 466 DFHLNEEVAIILASFS 481
>sp|Q86YW9|MD12L_HUMAN Mediator of RNA polymerase II transcription subunit 12-like protein
OS=Homo sapiens GN=MED12L PE=1 SV=2
Length = 2145
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 77 YPSTKITKSPYTLTPYSCNMGRNIFTTLLTILVDEWGYNLADKKQYVGTYI 127
YP + I + P +P S M + +TL WGYNL + Q G ++
Sbjct: 1784 YPQSNIYRVPPNYSPISSQMMHHPQSTL-------WGYNLVGQPQQPGFFL 1827
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,705,462
Number of Sequences: 539616
Number of extensions: 5038023
Number of successful extensions: 12564
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 12542
Number of HSP's gapped (non-prelim): 31
length of query: 346
length of database: 191,569,459
effective HSP length: 118
effective length of query: 228
effective length of database: 127,894,771
effective search space: 29160007788
effective search space used: 29160007788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)