Query psy10532
Match_columns 346
No_of_seqs 124 out of 138
Neff 2.4
Searched_HMMs 46136
Date Fri Aug 16 20:42:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4001|consensus 100.0 5.1E-52 1.1E-56 379.9 4.7 159 74-301 40-201 (259)
2 PF10211 Ax_dynein_light: Axon 100.0 4.5E-50 9.6E-55 352.0 12.9 107 133-253 11-117 (189)
3 PLN03188 kinesin-12 family pro 42.6 22 0.00048 41.2 3.3 42 240-310 1209-1250(1320)
4 PF08597 eIF3_subunit: Transla 32.1 83 0.0018 29.1 4.8 46 160-214 132-177 (245)
5 KOG2070|consensus 28.0 3E+02 0.0065 30.1 8.4 96 171-287 205-309 (661)
6 PF06548 Kinesin-related: Kine 26.8 60 0.0013 34.3 3.2 28 283-310 453-480 (488)
7 KOG3246|consensus 26.1 5.6E+02 0.012 25.0 9.1 98 138-236 104-214 (223)
8 PF00038 Filament: Intermediat 24.1 2.2E+02 0.0047 26.4 6.0 115 178-313 30-152 (312)
9 cd03015 PRX_Typ2cys Peroxiredo 22.9 1.3E+02 0.0028 25.5 4.0 73 102-195 92-168 (173)
10 PF07526 POX: Associated with 21.0 1.9E+02 0.0042 25.4 4.8 36 161-207 65-100 (140)
No 1
>KOG4001|consensus
Probab=100.00 E-value=5.1e-52 Score=379.88 Aligned_cols=159 Identities=50% Similarity=0.771 Sum_probs=138.6
Q ss_pred CCCcCC-cCcccCCCCC--CccccccCccccccceeeeecccccccccccccccchhcccceeeeeecCCCceEEEeecc
Q psy10532 74 RGTYPS-TKITKSPYTL--TPYSCNMGRNIFTTLLTILVDEWGYNLADKKQYVGTYILLEWLLEVYDDHTGKLYIRLLEV 150 (346)
Q Consensus 74 ~g~~p~-t~~t~~p~~~--~p~~~~~~~~~~tTplp~l~~~~G~~~~~~K~~~n~~I~~e~~p~~y~~e~g~~wvQ~Le~ 150 (346)
.|.-|- |-.++.|++. -|.+......|++.+|| |++| ++||++|.|
T Consensus 40 ~ggap~~~~e~k~pst~~~~~d~~~q~eeILn~ILP--------------------------PR~w-eedgqLW~Q---- 88 (259)
T KOG4001|consen 40 IGGAPNVTFESKIPSTEDDHIDSEHQLEEILNCILP--------------------------PRVW-EEDGQLWKQ---- 88 (259)
T ss_pred CCCCCCCCccccCCCCCccccChHHHHHHHHHccCC--------------------------chhh-hhccHHHHH----
Confidence 344444 5556666665 56666666666666666 5555 599999999
Q ss_pred cccCCCcceeecCCCCCHHHHHHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHHHHhhhhccccccchhHHHHHHHHH
Q psy10532 151 YDDHTGKLYKVSSDPATRLEVIKLNEQLDTRLQQRQARETGICPVRRELFTQCFDELIRQAAINCGERGLLLLRVRDEFR 230 (346)
Q Consensus 151 ydd~~~~~v~VSs~PATR~DVIqLqE~LD~~LqqrqARetGICPIRqeLYsQCFDELIRQVTInCaERGLLLlRVRDEir 230 (346)
.||++||||.|+++|++.|+.+|++++|++.||||||++||+|||||||||||++|.|||+||+||||||+
T Consensus 89 ---------qvSstPaTrqD~inl~e~l~~rLk~~~A~~~GicP~rreLYsQcFDElIRqvs~scveRGlll~rvRDEIr 159 (259)
T KOG4001|consen 89 ---------QVSSTPATRQDMINLEEKLESRLKDRGAKPFGICPIRRELYSQCFDELIRQVSVSCVERGLLLVRVRDEIR 159 (259)
T ss_pred ---------HhccCcchhhhhccCcHHHHHHHHHhccCCCCcCCCcHHHHHHHHHHHHHHcchhHHhcceeEEEehHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHhhhcCCccccccccccccccccccccccchhhcChhhHHHHHHHHHHhh
Q psy10532 231 QTIAGYQSLYESSIAFGMRKALQVCSGHVGVQGVSSFNKKSLNMKSKEGQDIAEQGKFDMEEEIERLRGAY 301 (346)
Q Consensus 231 mTIaAYqtLYESSvaFGmRKaLq~~~~~~g~~~~s~~~~~~~~~~~k~~~~~aEqgk~d~e~~i~~L~~~~ 301 (346)
||++|||+||+|||||||||||| ||++|.+|+.++..|+.++
T Consensus 160 Mt~aAYqtlyeSsvAfGmRKALq-----------------------------ae~ek~~~~~~~k~le~~k 201 (259)
T KOG4001|consen 160 MTFAAYQTLYESSVAFGMRKALQ-----------------------------AENEKTRATTEWKVLEDKK 201 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------------------HhhhhhHHHHHHHHHhhhH
Confidence 99999999999999999999999 7777777777777777665
No 2
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=100.00 E-value=4.5e-50 Score=352.02 Aligned_cols=107 Identities=70% Similarity=1.098 Sum_probs=103.7
Q ss_pred eeeeecCCCceEEEeecccccCCCcceeecCCCCCHHHHHHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHHHHhhhh
Q psy10532 133 LEVYDDHTGKLYIRLLEVYDDHTGKLYKVSSDPATRLEVIKLNEQLDTRLQQRQARETGICPVRRELFTQCFDELIRQAA 212 (346)
Q Consensus 133 p~~y~~e~g~~wvQ~Le~ydd~~~~~v~VSs~PATR~DVIqLqE~LD~~LqqrqARetGICPIRqeLYsQCFDELIRQVT 212 (346)
|..|. ++|+.|+| |||++|+||.||++|+++||.+|++++||++||||+|++||++||||||||||
T Consensus 11 pr~~~-~~~~~~~q-------------~vS~~p~tR~dVi~L~e~Ld~~L~~~~ar~~gIcpvr~~ly~~~F~ELIRQVT 76 (189)
T PF10211_consen 11 PREWE-EDGQLWIQ-------------FVSSAPATRQDVIQLQEWLDKMLQQRQARETGICPVREELYSQCFDELIRQVT 76 (189)
T ss_pred chhhh-cCCeeeEe-------------eeCCCCCCHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 44443 88999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHh
Q psy10532 213 INCGERGLLLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQ 253 (346)
Q Consensus 213 InCaERGLLLlRVRDEirmTIaAYqtLYESSvaFGmRKaLq 253 (346)
|+|||||+||++|||+++|||+||++||+|+++||+||+++
T Consensus 77 i~C~ERGlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~ 117 (189)
T PF10211_consen 77 IDCPERGLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQ 117 (189)
T ss_pred hCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999
No 3
>PLN03188 kinesin-12 family protein; Provisional
Probab=42.65 E-value=22 Score=41.25 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=33.1
Q ss_pred HHhHHHHHhHHHHhhhcCCccccccccccccccccccccccchhhcChhhHHHHHHHHHHhhccccccccc
Q psy10532 240 YESSIAFGMRKALQVCSGHVGVQGVSSFNKKSLNMKSKEGQDIAEQGKFDMEEEIERLRGAYACQVYLIPK 310 (346)
Q Consensus 240 YESSvaFGmRKaLq~~~~~~g~~~~s~~~~~~~~~~~k~~~~~aEqgk~d~e~~i~~L~~~~~~qv~~~~k 310 (346)
-|.+..++-+++.. +||....+-++|+.|...++.++.-++.
T Consensus 1209 aeea~~~a~~r~~~-----------------------------~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1209 AEEALTVAQKRAMD-----------------------------AEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888 9999999999999999998555544443
No 4
>PF08597 eIF3_subunit: Translation initiation factor eIF3 subunit; InterPro: IPR013906 This shows protein subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae (Baker's yeast) protein Q05775 from SWISSPROT has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p []. ; PDB: 3BPJ_D 2KRB_B.
Probab=32.08 E-value=83 Score=29.10 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=35.0
Q ss_pred eecCCCCCHHHHHHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHHHHhhhhcc
Q psy10532 160 KVSSDPATRLEVIKLNEQLDTRLQQRQARETGICPVRRELFTQCFDELIRQAAIN 214 (346)
Q Consensus 160 ~VSs~PATR~DVIqLqE~LD~~LqqrqARetGICPIRqeLYsQCFDELIRQVTIn 214 (346)
..+..|.|..|..+|.+.|-.+|....- .-.|..++.+|||+++.+
T Consensus 132 l~~~~pkTk~DF~~~~~~l~~kl~~~~k---------s~~y~~fl~~l~r~l~~~ 177 (245)
T PF08597_consen 132 LDSFNPKTKEDFEEFAEALAKKLTSFEK---------SPHYPSFLKELIRDLCKN 177 (245)
T ss_dssp TTT----SHHHHHHHHHHHHHHHGGGTT---------STTHHHHHHHHHHHHHTT
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHcccC---------hHHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999887722 225999999999999885
No 5
>KOG2070|consensus
Probab=28.00 E-value=3e+02 Score=30.12 Aligned_cols=96 Identities=22% Similarity=0.388 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHhcccccCC-------c-hh-HHHHHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q psy10532 171 VIKLNEQLDTRLQQRQARETGI-------C-PV-RRELFTQCFDELIRQAAINCGERGLLLLRVRDEFRQTIAGYQSLYE 241 (346)
Q Consensus 171 VIqLqE~LD~~LqqrqARetGI-------C-PI-RqeLYsQCFDELIRQVTInCaERGLLLlRVRDEirmTIaAYqtLYE 241 (346)
..+-++.|.+-.+..+|..-|| . |. |=+=|.....||=|.|--+-|+||-+ +..+++|++|-.
T Consensus 205 L~k~~dELek~me~Qgasspg~lvLttgLSkPfrrldkY~~lLQELERhme~~HpDrgD~--------qrs~avfk~~~~ 276 (661)
T KOG2070|consen 205 LTKHSDELEKFMETQGASSPGILVLTTGLSKPFRRLDKYPTLLQELERHMEDYHPDRGDI--------QRSMAVFKNLSA 276 (661)
T ss_pred HHHhHHHHHHHHHhcCCCCCCeEEEecccchHHHHHHHHHHHHHHHHHhccccCCchHHH--------HHHHHHHHHHHH
Confidence 3455677888888888885554 3 76 55889999999999999999999964 567789999988
Q ss_pred hHHHHHhHHHHhhhcCCccccccccccccccccccccccchhhcCh
Q psy10532 242 SSIAFGMRKALQVCSGHVGVQGVSSFNKKSLNMKSKEGQDIAEQGK 287 (346)
Q Consensus 242 SSvaFGmRKaLq~~~~~~g~~~~s~~~~~~~~~~~k~~~~~aEqgk 287 (346)
-.-+.--||-|+ .+--..-+..++++|+.+-|.
T Consensus 277 ~Cq~lRkqKEle-------------LqiLt~~i~~w~g~d~s~lG~ 309 (661)
T KOG2070|consen 277 QCQELRKQKELE-------------LQILTEPIRNWEGDDISTLGN 309 (661)
T ss_pred HHHHHHhhhhhh-------------hhhhcccccccccchhhhccc
Confidence 888877788777 222233344577777776663
No 6
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=26.81 E-value=60 Score=34.31 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=23.4
Q ss_pred hhcChhhHHHHHHHHHHhhccccccccc
Q psy10532 283 AEQGKFDMEEEIERLRGAYACQVYLIPK 310 (346)
Q Consensus 283 aEqgk~d~e~~i~~L~~~~~~qv~~~~k 310 (346)
+||....+-++|+.|...++..+.-++.
T Consensus 453 ~eqe~ek~~kqiekLK~kh~~Ei~t~kq 480 (488)
T PF06548_consen 453 AEQENEKAKKQIEKLKRKHKMEISTMKQ 480 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988777765544
No 7
>KOG3246|consensus
Probab=26.07 E-value=5.6e+02 Score=24.95 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=66.3
Q ss_pred cCCCceEEEeecccccCCCcceeecCCCCCHHHHHHHHHHHHHHHHHhcccc-cCCchhHHH-----HHHHHH-HHHHhh
Q psy10532 138 DHTGKLYIRLLEVYDDHTGKLYKVSSDPATRLEVIKLNEQLDTRLQQRQARE-TGICPVRRE-----LFTQCF-DELIRQ 210 (346)
Q Consensus 138 ~e~g~~wvQ~Le~ydd~~~~~v~VSs~PATR~DVIqLqE~LD~~LqqrqARe-tGICPIRqe-----LYsQCF-DELIRQ 210 (346)
.++|..|-= |=|+-++++-.-|=|..-..+-+.-++.+.+...|.++++.- .+-||--++ +|--|| ++|-++
T Consensus 104 ~~GGsHWSL-LV~sr~~~~f~hyDS~~n~nt~~a~~l~~kl~~ll~~~~~~~~~~~~~qQqNgyDCG~hV~~~t~~l~~~ 182 (223)
T KOG3246|consen 104 ASGGSHWSL-LVFSRPDGKFYHYDSLSNGNTKDAKSLMKKLRALLKKKFAKRVECKCLQQQNGYDCGLHVCCNTRVLAER 182 (223)
T ss_pred cCCCcceEE-EEEEeeCCcEEEeecccCCCcHHHHHHHHHHHHHHhhhhhhcccccChhhhcCCchhHHHHHHHHHHHHH
Confidence 366677743 555555566677889999999999999999999999999987 788887654 666777 444444
Q ss_pred hhccccccchhHHH------HHHHHHHHHHHH
Q psy10532 211 AAINCGERGLLLLR------VRDEFRQTIAGY 236 (346)
Q Consensus 211 VTInCaERGLLLlR------VRDEirmTIaAY 236 (346)
+.=.--.-+..++. .|.|+...|.++
T Consensus 183 ~~~~~~~~~~~~~~~~~i~~lr~~l~~LI~sl 214 (223)
T KOG3246|consen 183 LLRCPYATSSQLLVVDLIKALREELLDLIQSL 214 (223)
T ss_pred HhccccccccchhhHHHHHHHHHHHHHHHHHh
Confidence 44332333444443 455555555443
No 8
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=24.09 E-value=2.2e+02 Score=26.39 Aligned_cols=115 Identities=18% Similarity=0.328 Sum_probs=59.6
Q ss_pred HHHHHHHhcccccCCchhHHHHHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhcC
Q psy10532 178 LDTRLQQRQARETGICPVRRELFTQCFDELIRQAAINCGERGLLLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQVCSG 257 (346)
Q Consensus 178 LD~~LqqrqARetGICPIRqeLYsQCFDELIRQVTInCaERGLLLlRVRDEirmTIaAYqtLYESSvaFGmRKaLq~~~~ 257 (346)
|...+.....+...-+.--...|..=..++=++|--...|+..|.+.+ +-++..++-++.-|+.. ...|+.+.
T Consensus 30 Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~-~~l~~e~~~~r~k~e~e--~~~~~~le---- 102 (312)
T PF00038_consen 30 LESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEI-DNLKEELEDLRRKYEEE--LAERKDLE---- 102 (312)
T ss_dssp HHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHH----
T ss_pred hHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhh-hhHHHHHHHHHHHHHHH--HHHHHHHH----
Confidence 333344344333333443466777777778888888888888887654 34555556666666654 33444444
Q ss_pred Ccccccccccccccccccc-ccccchhhcChhhHHHHHHHHHHh-------hcccccccccccc
Q psy10532 258 HVGVQGVSSFNKKSLNMKS-KEGQDIAEQGKFDMEEEIERLRGA-------YACQVYLIPKEHT 313 (346)
Q Consensus 258 ~~g~~~~s~~~~~~~~~~~-k~~~~~aEqgk~d~e~~i~~L~~~-------~~~qv~~~~k~h~ 313 (346)
.++.+ +...+.+.....+++.+|..|+.+ ++..+..+...+.
T Consensus 103 --------------~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~ 152 (312)
T PF00038_consen 103 --------------EELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ 152 (312)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT--
T ss_pred --------------HHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 11111 222233444455566666655554 4667777777664
No 9
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=22.94 E-value=1.3e+02 Score=25.54 Aligned_cols=73 Identities=21% Similarity=0.245 Sum_probs=38.2
Q ss_pred ccceeeeecccccccccccccc---cchhcccceeeeeecCCCceEEEeecccccCCCcceeecCCCCCHHHHHHHHHHH
Q psy10532 102 TTLLTILVDEWGYNLADKKQYV---GTYILLEWLLEVYDDHTGKLYIRLLEVYDDHTGKLYKVSSDPATRLEVIKLNEQL 178 (346)
Q Consensus 102 tTplp~l~~~~G~~~~~~K~~~---n~~I~~e~~p~~y~~e~g~~wvQ~Le~ydd~~~~~v~VSs~PATR~DVIqLqE~L 178 (346)
..++|.+.|.+|.....-.-+. +..+|..+++. .+|+..-. +++..|..| +.-.+-+.|
T Consensus 92 ~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID----~~G~I~~~-------------~~~~~~~~~-~~~~il~~l 153 (173)
T cd03015 92 KINFPLLADPKKKISRDYGVLDEEEGVALRGTFIID----PEGIIRHI-------------TVNDLPVGR-SVDETLRVL 153 (173)
T ss_pred CcceeEEECCchhHHHHhCCccccCCceeeEEEEEC----CCCeEEEE-------------EecCCCCCC-CHHHHHHHH
Confidence 3468889998876433321111 22344444432 34544444 677777666 444455555
Q ss_pred HHHHHHhcccccC-Cchh
Q psy10532 179 DTRLQQRQARETG-ICPV 195 (346)
Q Consensus 179 D~~LqqrqARetG-ICPI 195 (346)
+.+ ..+++.| .||+
T Consensus 154 ~~~---~~~~~~~~~~~~ 168 (173)
T cd03015 154 DAL---QFVEEHGEVCPA 168 (173)
T ss_pred HHh---hhhhhcCCCcCC
Confidence 443 2333444 7886
No 10
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=21.03 E-value=1.9e+02 Score=25.41 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=29.6
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHHH
Q psy10532 161 VSSDPATRLEVIKLNEQLDTRLQQRQARETGICPVRRELFTQCFDEL 207 (346)
Q Consensus 161 VSs~PATR~DVIqLqE~LD~~LqqrqARetGICPIRqeLYsQCFDEL 207 (346)
++..|+.|.|....+..|-.||++-- .=|+||+|++
T Consensus 65 ~~ls~~~~~e~q~kK~KLl~mL~eVd-----------~RY~qY~~Qm 100 (140)
T PF07526_consen 65 PELSPAERQELQRKKAKLLSMLDEVD-----------RRYRQYYDQM 100 (140)
T ss_pred CCCChhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 45668999999999999999999843 3488888765
Done!