Query psy10532
Match_columns 346
No_of_seqs 124 out of 138
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 20:43:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swk_A Vimentin; cytoskeleton, 68.1 9.7 0.00033 29.7 5.4 76 205-301 3-79 (86)
2 3ol1_A Vimentin; structural ge 59.6 19 0.00067 29.1 6.0 83 198-301 16-99 (119)
3 3bpj_A Eukaryotic translation 49.0 33 0.0011 26.3 5.4 47 161-216 6-52 (80)
4 3fwc_B Nuclear mRNA export pro 26.5 36 0.0012 26.8 2.4 43 174-216 23-65 (85)
5 3mq9_A Bone marrow stromal ant 20.8 1.2E+02 0.0041 28.0 5.1 87 204-301 357-452 (471)
6 3oja_B Anopheles plasmodium-re 18.9 3.5E+02 0.012 25.5 7.9 11 202-212 505-515 (597)
7 3oa7_A Head morphogenesis prot 14.3 4.4E+02 0.015 24.1 7.0 76 192-305 3-78 (206)
8 3ach_A Beta-1,4-endoglucanase; 13.4 49 0.0017 30.1 0.6 23 60-82 11-33 (203)
9 2l72_A Tgadf, actin depolymeri 13.3 1.6E+02 0.0055 24.0 3.6 32 156-212 88-120 (139)
10 1wwj_A Circadian clock protein 12.0 1E+02 0.0034 25.4 1.9 26 157-182 10-36 (105)
No 1
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=68.05 E-value=9.7 Score=29.67 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=59.9
Q ss_pred HHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhcCCcccccccccccccccccc-ccccchh
Q psy10532 205 DELIRQAAINCGERGLLLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQVCSGHVGVQGVSSFNKKSLNMKS-KEGQDIA 283 (346)
Q Consensus 205 DELIRQVTInCaERGLLLlRVRDEirmTIaAYqtLYESSvaFGmRKaLq~~~~~~g~~~~s~~~~~~~~~~~-k~~~~~a 283 (346)
.||=+||---..|++.|.+.+.+ ++..++-|+.=||. ..++|..+. -++.. |.-.|.+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn-~~~~~edfk~KyE~--E~~~R~~~E------------------~d~~~LrkdvD~a 61 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDN-LAEDIMRLREKLQE--EMLQREEAE------------------NTLQSFRQDVDNA 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHH------------------HHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHH------------------HHHHHHHhhHHHH
Confidence 35666776667899999988765 89999999999997 456777777 34445 6667778
Q ss_pred hcChhhHHHHHHHHHHhh
Q psy10532 284 EQGKFDMEEEIERLRGAY 301 (346)
Q Consensus 284 Eqgk~d~e~~i~~L~~~~ 301 (346)
--.+.|++.+|+.|..+.
T Consensus 62 ~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 62 SLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 889999999999998875
No 2
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=59.56 E-value=19 Score=29.15 Aligned_cols=83 Identities=17% Similarity=0.289 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhcCCcccccccccccccccccc-
Q psy10532 198 ELFTQCFDELIRQAAINCGERGLLLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQVCSGHVGVQGVSSFNKKSLNMKS- 276 (346)
Q Consensus 198 eLYsQCFDELIRQVTInCaERGLLLlRVRDEirmTIaAYqtLYESSvaFGmRKaLq~~~~~~g~~~~s~~~~~~~~~~~- 276 (346)
.+|..-..+|=+||--...|++.|.+.+. -++...+-|+.=||.-+ ++|..+. .++..
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leld-n~~~~~edfk~KyE~E~--~~r~~~E------------------~di~~l 74 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERD-NLAEDIMRLREKLQEEM--LQREEAE------------------NTLQSF 74 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHH------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHH--HHHHHHH------------------HHHHHh
Confidence 46777778888999888889999988864 57888888999998755 4566655 22222
Q ss_pred ccccchhhcChhhHHHHHHHHHHhh
Q psy10532 277 KEGQDIAEQGKFDMEEEIERLRGAY 301 (346)
Q Consensus 277 k~~~~~aEqgk~d~e~~i~~L~~~~ 301 (346)
|.-.|.+--.+.|++.+|+.|.++.
T Consensus 75 rK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 75 RQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHH
Confidence 4444556667888888888887765
No 3
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=48.98 E-value=33 Score=26.33 Aligned_cols=47 Identities=15% Similarity=0.344 Sum_probs=39.3
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHHhcccccCCchhHHHHHHHHHHHHHhhhhcccc
Q psy10532 161 VSSDPATRLEVIKLNEQLDTRLQQRQARETGICPVRRELFTQCFDELIRQAAINCG 216 (346)
Q Consensus 161 VSs~PATR~DVIqLqE~LD~~LqqrqARetGICPIRqeLYsQCFDELIRQVTInCa 216 (346)
.+..|.|..|-..+.+.|-..|....-. -.|..+..+|||+++.+.+
T Consensus 6 ~~f~P~Tk~dF~~~~~~l~~kl~~~~ks---------~~y~~f~~~lir~l~~~L~ 52 (80)
T 3bpj_A 6 DAMNPSSRDDFTEFGKLLKDKITQYEKS---------LYYASFLEVLVRDVCISLE 52 (80)
T ss_dssp TTCCCCSHHHHHHHHHHHHHHHGGGTTS---------TTHHHHHHHHHHHHHTTSC
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhccCC---------hhHHHHHHHHHHHHHccCC
Confidence 4678999999999999999998764322 3589999999999999866
No 4
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=26.54 E-value=36 Score=26.84 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcccccCCchhHHHHHHHHHHHHHhhhhcccc
Q psy10532 174 LNEQLDTRLQQRQARETGICPVRRELFTQCFDELIRQAAINCG 216 (346)
Q Consensus 174 LqE~LD~~LqqrqARetGICPIRqeLYsQCFDELIRQVTInCa 216 (346)
|...|...+++...|..=|--+-++||+-.++|.|=++++++-
T Consensus 23 l~~~l~~~l~~~~~R~~iI~sLs~eLy~AFihE~lY~~~lesk 65 (85)
T 3fwc_B 23 VISIVKREFSEANYRKDFIDTMTRELYDAFLHERLYLIYMDSR 65 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666667777678888999999999999999998764
No 5
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.75 E-value=1.2e+02 Score=28.04 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=41.1
Q ss_pred HHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhcCCcccccccccccccccccccc-----
Q psy10532 204 FDELIRQAAINCGERGLLLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQVCSGHVGVQGVSSFNKKSLNMKSKE----- 278 (346)
Q Consensus 204 FDELIRQVTInCaERGLLLlRVRDEirmTIaAYqtLYESSvaFGmRKaLq~~~~~~g~~~~s~~~~~~~~~~~k~----- 278 (346)
|.+.|.+|-..-..--.-|-.+-++++..|+-+..-.|.. -.+..|| |+++..+|+-.+.+++.
T Consensus 357 ~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~---~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 425 (471)
T 3mq9_A 357 VRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVMEAR---NVTHLLQ--------QELTEAQKGFQDVEAQAATANH 425 (471)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhh---hHHHHHH--------HHHHHHhhhHHHHHHHhhhcch
Confidence 3444444433322222345666666666666655554433 2333444 44445555444443321
Q ss_pred ----ccchhhcChhhHHHHHHHHHHhh
Q psy10532 279 ----GQDIAEQGKFDMEEEIERLRGAY 301 (346)
Q Consensus 279 ----~~~~aEqgk~d~e~~i~~L~~~~ 301 (346)
-++-.|..++.-+++|++||.+.
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (471)
T 3mq9_A 426 TVMALMASLDAEKAQGQKKVEELEGEI 452 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334444555555666666655
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=18.90 E-value=3.5e+02 Score=25.46 Aligned_cols=11 Identities=0% Similarity=0.205 Sum_probs=4.5
Q ss_pred HHHHHHHhhhh
Q psy10532 202 QCFDELIRQAA 212 (346)
Q Consensus 202 QCFDELIRQVT 212 (346)
+.+.+.+.++.
T Consensus 505 ~~l~~~~~~~~ 515 (597)
T 3oja_B 505 DNLNKVFTHLK 515 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 7
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=14.31 E-value=4.4e+02 Score=24.08 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=52.1
Q ss_pred CchhHHHHHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhcCCccccccccccccc
Q psy10532 192 ICPVRRELFTQCFDELIRQAAINCGERGLLLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQVCSGHVGVQGVSSFNKKS 271 (346)
Q Consensus 192 ICPIRqeLYsQCFDELIRQVTInCaERGLLLlRVRDEirmTIaAYqtLYESSvaFGmRKaLq~~~~~~g~~~~s~~~~~~ 271 (346)
--|...+-...+.+-|.- -.+.-.||-.+|..+|-++.....+|+.|=-|--. ++
T Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~------l~------------------ 57 (206)
T 3oa7_A 3 SGPLKPEEHEDILNKLLD-PELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNT------LS------------------ 57 (206)
T ss_dssp -CCCCHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH------------------
T ss_pred CCCCCchhHHHHHHHhcC-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH------------------
Confidence 345544444444444432 23456799999999999999999999998543222 33
Q ss_pred cccccccccchhhcChhhHHHHHHHHHHhhcccc
Q psy10532 272 LNMKSKEGQDIAEQGKFDMEEEIERLRGAYACQV 305 (346)
Q Consensus 272 ~~~~~k~~~~~aEqgk~d~e~~i~~L~~~~~~qv 305 (346)
+ ..+|+.+.+..|++...+.+
T Consensus 58 -----------a--e~~~L~~~l~kLeGn~se~I 78 (206)
T 3oa7_A 58 -----------K--ELDNLRSRFGNLEGNTSERI 78 (206)
T ss_dssp -----------H--HHHHHHHHHHHHHCCGGGCC
T ss_pred -----------h--HHHHHHHHHHHccCCHHhcc
Confidence 2 36899999999999885544
No 8
>3ach_A Beta-1,4-endoglucanase; beta-jellyroll, cellulose-binding domain, hydrolase; HET: BGC; 1.40A {Clostridium josui} PDB: 3acf_A* 3acg_A* 3aci_A*
Probab=13.41 E-value=49 Score=30.09 Aligned_cols=23 Identities=48% Similarity=0.640 Sum_probs=20.7
Q ss_pred eEEEEeeeccCCCCCCCcCCcCc
Q psy10532 60 WAVVETTVRSKPLGRGTYPSTKI 82 (346)
Q Consensus 60 ~~~~~~~~~~~~~~~g~~p~t~~ 82 (346)
-||||..|-..|+|.-++|||-+
T Consensus 11 ~~~~e~pv~hap~G~~tLPS~FE 33 (203)
T 3ach_A 11 RAVVEAPVEHAPIGKATLPSTFE 33 (203)
T ss_dssp CCCCCSCCCCCCCCCCCSSBCCT
T ss_pred eeeccccccccCCCCccCCCccc
Confidence 37999999999999999999854
No 9
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=13.26 E-value=1.6e+02 Score=24.02 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=25.8
Q ss_pred CcceeecCCCCCHHHHHHHHHHHHHHHHHhcccccCCchhHHH-HHHHHHHHHHhhhh
Q psy10532 156 GKLYKVSSDPATRLEVIKLNEQLDTRLQQRQARETGICPVRRE-LFTQCFDELIRQAA 212 (346)
Q Consensus 156 ~~~v~VSs~PATR~DVIqLqE~LD~~LqqrqARetGICPIRqe-LYsQCFDELIRQVT 212 (346)
...+|++-.|.+ ||+|+. ||+-+.+-|.+++.
T Consensus 88 ~k~vFI~w~Pd~-------------------------a~vk~KMlYASsk~~lk~~l~ 120 (139)
T 2l72_A 88 NKIQFVLWCPDN-------------------------APVKPRMTYASSKDALLKKLD 120 (139)
T ss_dssp SCEEEEEECCTT-------------------------SCHHHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEEECCCC-------------------------CChhHeeehHhhHHHHHHHhC
Confidence 456788888875 888766 99999999988773
No 10
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A
Probab=11.97 E-value=1e+02 Score=25.39 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=24.0
Q ss_pred cceeec-CCCCCHHHHHHHHHHHHHHH
Q psy10532 157 KLYKVS-SDPATRLEVIKLNEQLDTRL 182 (346)
Q Consensus 157 ~~v~VS-s~PATR~DVIqLqE~LD~~L 182 (346)
+++||+ .+|.|+..+.+|++.++..|
T Consensus 10 L~LyVaG~tp~S~~ai~nL~~i~e~~l 36 (105)
T 1wwj_A 10 LKLYVAGNTPNSVRALKMLKNILEQEF 36 (105)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhc
Confidence 588999 89999999999999999888
Done!