Query psy10532
Match_columns 346
No_of_seqs 124 out of 138
Neff 2.4
Searched_HMMs 13730
Date Fri Aug 16 20:43:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10532.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10532hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mn3a_ a.5.2.4 (A:) Vacuolar 20.7 28 0.002 23.9 2.4 35 226-260 9-43 (54)
2 d2auwa2 d.331.1.1 (A:4-87) Hyp 18.7 20 0.0014 25.9 1.3 34 312-345 12-46 (84)
3 d2fpwa1 c.108.1.19 (A:3-163) H 18.1 29 0.0021 26.5 2.3 38 154-191 45-88 (161)
4 d2cxaa1 d.108.1.6 (A:1-232) Le 14.3 11 0.00081 32.5 -1.3 38 200-248 91-132 (232)
5 d2hdca_ a.4.5.14 (A:) Genesis 13.9 83 0.006 23.1 3.9 49 204-253 7-55 (97)
6 d2a26a1 a.2.16.1 (A:1-47) Calc 11.1 1.1E+02 0.0081 20.6 3.4 28 226-253 3-30 (47)
7 d2a07f1 a.4.5.14 (F:503-584) F 11.0 74 0.0054 22.8 2.7 49 204-253 7-55 (82)
8 d2fug41 e.18.1.2 (4:35-409) NA 10.8 3.4E+02 0.025 21.9 7.3 52 187-241 49-101 (375)
9 d2h01a1 c.47.1.10 (A:2-171) Th 10.6 92 0.0067 23.6 3.3 33 160-195 133-165 (170)
10 d1d5va_ a.4.5.14 (A:) Adipocyt 10.0 82 0.006 23.0 2.7 49 204-253 9-57 (94)
No 1
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.65 E-value=28 Score=23.94 Aligned_cols=35 Identities=9% Similarity=0.104 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHhhhcCCcc
Q psy10532 226 RDEFRQTIAGYQSLYESSIAFGMRKALQVCSGHVG 260 (346)
Q Consensus 226 RDEirmTIaAYqtLYESSvaFGmRKaLq~~~~~~g 260 (346)
|.|.+..++..+.+|-..-.=-++--|..|.|++|
T Consensus 9 ~~e~~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd 43 (54)
T d1mn3a_ 9 ENERKDTLNTLQNMFPDMDPSLIEDVCIAKKSRIE 43 (54)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHSCSSCSHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHH
Confidence 67888899999999987776677777776666654
No 2
>d2auwa2 d.331.1.1 (A:4-87) Hypothetical protein NE0471 N-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=18.65 E-value=20 Score=25.88 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=28.2
Q ss_pred ccceeeeeeecccceeeeecccceeeee-ccCCCC
Q psy10532 312 HTHYQVDLTLQDHTHYQVDLTGMVEKVR-LSGLRD 345 (346)
Q Consensus 312 h~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 345 (346)
..+|++.++..|..+-.+||+.+++|-. ..-|+|
T Consensus 12 l~~y~L~v~F~dG~~~~~Dl~~~l~~~~~F~~L~D 46 (84)
T d2auwa2 12 LAPYRLRTTWSTGEVLEVDVGDILRKIPDLAPILD 46 (84)
T ss_dssp CSTTEEEEEETTSCEEEEECHHHHHHCGGGGGGGS
T ss_pred CCCcEEEEEEcCCCEEEEEhHHhhhcCCcchhhcC
Confidence 4789999999999999999999988753 455554
No 3
>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}
Probab=18.07 E-value=29 Score=26.47 Aligned_cols=38 Identities=5% Similarity=-0.035 Sum_probs=29.7
Q ss_pred CCCcceeecCCC------CCHHHHHHHHHHHHHHHHHhcccccC
Q psy10532 154 HTGKLYKVSSDP------ATRLEVIKLNEQLDTRLQQRQARETG 191 (346)
Q Consensus 154 ~~~~~v~VSs~P------ATR~DVIqLqE~LD~~LqqrqARetG 191 (346)
.+-..+.+|..| -++.++..+...|...|...+....+
T Consensus 45 ~g~~l~i~TNq~~ia~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 88 (161)
T d2fpwa1 45 AGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDE 88 (161)
T ss_dssp TTEEEEEEEECTTTTSTTSCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCceeeecccccchhHHHHHHHhhhhhhhhhhhccccccccce
Confidence 344456677666 68999999999999999998876654
No 4
>d2cxaa1 d.108.1.6 (A:1-232) Leucyl/phenylalanyl-tRNA-protein transferase, LFTR (Aat) {Escherichia coli [TaxId: 562]}
Probab=14.31 E-value=11 Score=32.53 Aligned_cols=38 Identities=24% Similarity=0.463 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhhccccccchhHHHHHHH----HHHHHHHHHHHHHhHHHHHh
Q psy10532 200 FTQCFDELIRQAAINCGERGLLLLRVRDE----FRQTIAGYQSLYESSIAFGM 248 (346)
Q Consensus 200 YsQCFDELIRQVTInCaERGLLLlRVRDE----irmTIaAYqtLYESSvaFGm 248 (346)
++++|+++|+. |+.++ ++ ....++||..||+...|+.+
T Consensus 91 in~~F~~VI~~----Ca~~~-------~~~tWI~~~ii~aY~~Lh~~G~AHSV 132 (232)
T d2cxaa1 91 MNYAFGQVIEG----CASDR-------EEGTWITRGVVEAYHRLHELGHAHSI 132 (232)
T ss_dssp ESSCHHHHHHH----HHTC----------CTTCCHHHHHHHHHHHHTTSEEEE
T ss_pred ECchHHHHHHh----cCCCC-------CCCcchhHHHHHHHHHHHhCCeEEEE
Confidence 57899999997 55432 22 24578999999998877654
No 5
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.91 E-value=83 Score=23.09 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=42.5
Q ss_pred HHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHh
Q psy10532 204 FDELIRQAAINCGERGLLLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQ 253 (346)
Q Consensus 204 FDELIRQVTInCaERGLLLlRVRDEirmTIaAYqtLYESSvaFGmRKaLq 253 (346)
|-+||.+.-.++|+..|-|..|-+-|....-.|+.=. ..-...+|..|.
T Consensus 7 Y~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyfr~~~-~gWkNSIRHnLS 55 (97)
T d2hdca_ 7 YIALITMAILQSPQKKLTLSGICEFISNRFPYYREKF-PAWQNSIRHNLS 55 (97)
T ss_dssp HHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHC-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCccHHHHHHHHHHhCccccCCC-CCchhhhhhhcc
Confidence 4678999999999999999999999999999898743 467788898888
No 6
>d2a26a1 a.2.16.1 (A:1-47) Calcyclin-binding protein, CacyBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.13 E-value=1.1e+02 Score=20.55 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHh
Q psy10532 226 RDEFRQTIAGYQSLYESSIAFGMRKALQ 253 (346)
Q Consensus 226 RDEirmTIaAYqtLYESSvaFGmRKaLq 253 (346)
++|++.-+.--+.|.+.+..--+|++|-
T Consensus 3 ~eElqkDLeEvk~LLekaTRkRvrd~Lt 30 (47)
T d2a26a1 3 SEELQKDLEEVKVLLEKATRKRVRDALT 30 (47)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888899999999999999999999
No 7
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.03 E-value=74 Score=22.82 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=41.7
Q ss_pred HHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHh
Q psy10532 204 FDELIRQAAINCGERGLLLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQ 253 (346)
Q Consensus 204 FDELIRQVTInCaERGLLLlRVRDEirmTIaAYqtLYESSvaFGmRKaLq 253 (346)
|-.||.+.-.++++.+|-|..|-+-+......|+.=.. .-.-.+|..|.
T Consensus 7 Y~~LI~~Ai~~sp~~~LtL~eIy~~i~~~fpyyr~~~~-gWkNSIRHnLS 55 (82)
T d2a07f1 7 YATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAA-TWKNAVRHNLS 55 (82)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCc-ccchhHhHhcc
Confidence 46789999889999999999999999999998876443 56778888888
No 8
>d2fug41 e.18.1.2 (4:35-409) NADH-quinone oxidoreductase chain 4, Nqo4 {Thermus thermophilus [TaxId: 274]}
Probab=10.77 E-value=3.4e+02 Score=21.85 Aligned_cols=52 Identities=10% Similarity=0.096 Sum_probs=35.3
Q ss_pred ccccCCchhHHH-HHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q psy10532 187 ARETGICPVRRE-LFTQCFDELIRQAAINCGERGLLLLRVRDEFRQTIAGYQSLYE 241 (346)
Q Consensus 187 ARetGICPIRqe-LYsQCFDELIRQVTInCaERGLLLlRVRDEirmTIaAYqtLYE 241 (346)
.|=.||||+-.. -+..+.+.++. |..|+++.+|-.+=.+.....+-...+|.
T Consensus 49 ~RICGIC~~aH~~A~~~AlE~a~g---v~~p~~a~~lR~l~~~~e~i~sH~l~~~~ 101 (375)
T d2fug41 49 PRMDYLHSFAHDLAYALAVEKLLG---AVVPPRAETIRVILNELSRLASHLVFLGT 101 (375)
T ss_dssp GGTTSSSHHHHHHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345699999544 47778888763 45699999988777666655554444443
No 9
>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}
Probab=10.63 E-value=92 Score=23.56 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=19.1
Q ss_pred eecCCCCCHHHHHHHHHHHHHHHHHhcccccCCchh
Q psy10532 160 KVSSDPATRLEVIKLNEQLDTRLQQRQARETGICPV 195 (346)
Q Consensus 160 ~VSs~PATR~DVIqLqE~LD~~LqqrqARetGICPI 195 (346)
+++..|..| ++-++.+.|+.+- ...+....||.
T Consensus 133 ~~~~~~~~~-~~~eil~~l~~lq--~~~~~~~~~~~ 165 (170)
T d2h01a1 133 LVNNLALGR-SVDEILRLIDALQ--HHEKYGDVCPA 165 (170)
T ss_dssp EEGGGSSGG-GHHHHHHHHHHHH--HHHHHCCCCCS
T ss_pred EEecCCCCC-CHHHHHHHHHHhh--hhhhcCCccCC
Confidence 566777666 5666666666542 23333468885
No 10
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.03 E-value=82 Score=23.05 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=40.7
Q ss_pred HHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHh
Q psy10532 204 FDELIRQAAINCGERGLLLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQ 253 (346)
Q Consensus 204 FDELIRQVTInCaERGLLLlRVRDEirmTIaAYqtLYESSvaFGmRKaLq 253 (346)
|-+||.+.-.++|+..+-|..|-+-+......|+.-. ..-.-.+|..|.
T Consensus 9 Ya~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyfr~~~-~gWkNSIRHnLS 57 (94)
T d1d5va_ 9 YIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENK-QGWQNSIRHNLS 57 (94)
T ss_dssp HHHHHHHHHHTCSSSSBCHHHHHHHHHHHCTHHHHCC-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHCCccCccc-cchHHHHHHHcc
Confidence 4578999988999999999999999999999998633 345667788887
Done!