RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10532
         (346 letters)



>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain.  Axonemal
           dynein light chain proteins play a dynamic role in
           flagellar and cilia motility. Eukaryotic cilia and
           flagella are complex organelles consisting of a core
           structure, the axoneme, which is composed of nine
           microtubule doublets forming a cylinder that surrounds a
           pair of central singlet microtubules. This
           ultra-structural arrangement seems to be one of the most
           stable micro-tubular assemblies known and is responsible
           for the flagellar and ciliary movement of a large number
           of organisms ranging from protozoan to mammals. This
           light chain interacts directly with the N-terminal half
           of the heavy chains.
          Length = 189

 Score =  177 bits (452), Expect = 5e-55
 Identities = 82/148 (55%), Positives = 100/148 (67%), Gaps = 31/148 (20%)

Query: 153 DHTGKLYK--VSSDPATRLEVIKLNEQLDTRLQQRQARETGICPVRRELFTQCFDELIRQ 210
           +  G+L+   VS+ PA+R +VI L E+LD RLQQRQARETGICP+R EL++QCFDELIRQ
Sbjct: 15  EEDGQLWIQYVSTAPASREDVINLQEKLDRRLQQRQARETGICPIREELYSQCFDELIRQ 74

Query: 211 AAINCGERGLLLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQVCSGHVGVQGVSSFNKK 270
             I+C ERGLLLLRVRDE R TIA YQ+LYESS+AFGMRKALQ                 
Sbjct: 75  VTIDCPERGLLLLRVRDELRMTIAAYQTLYESSVAFGMRKALQ----------------- 117

Query: 271 SLNMKSKEGQDIAEQGKFDMEEEIERLR 298
                       AEQGK ++E+EI++L 
Sbjct: 118 ------------AEQGKSELEQEIKKLE 133


>gnl|CDD|147031 pfam04673, Cyclase_polyket, Polyketide synthesis cyclase.  This
           family represents a number of cyclases involved in
           polyketide synthesis in a number of actinobacterial
           species.
          Length = 97

 Score = 28.4 bits (64), Expect = 1.6
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 4/36 (11%)

Query: 143 LYIRLLEVYDDHTGKLYKVSSDPATRLEVIKLNEQL 178
           LY  L E   D    + +  S P      ++++E+L
Sbjct: 38  LYFHLQEAEADGGETIAEARSHP----LFVRVSERL 69


>gnl|CDD|226370 COG3852, NtrB, Signal transduction histidine kinase, nitrogen
           specific [Signal transduction mechanisms].
          Length = 363

 Score = 29.3 bits (66), Expect = 3.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 197 RELFTQCFDELIRQAA----INCGERGLLLLRVRDEFRQTIAG 235
           R+   Q F  L+R AA        E G ++LR R   + TIAG
Sbjct: 239 RDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAG 281


>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily;
           ERdj5, also known as JPDI and macrothioredoxin, is a
           protein containing an N-terminal DnaJ domain and four
           redox active TRX domains. This subfamily is comprised of
           the first TRX domain of ERdj5 located after the DnaJ
           domain at the N-terminal half of the protein. ERdj5 is a
           ubiquitous protein localized in the endoplasmic
           reticulum (ER) and is abundant in secretory cells. It's
           transcription is induced during ER stress. It interacts
           with BiP through its DnaJ domain in an ATP-dependent
           manner. BiP, an ER-resident member of the Hsp70
           chaperone family, functions in ER-associated degradation
           and protein translocation.
          Length = 101

 Score = 27.1 bits (60), Expect = 5.2
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 194 PVRRELFTQCFDELIRQAAINCGERGLLLLRVRDEFRQTIAGYQSLY 240
           P  RE F +  D +IR  A+NCG+  +L         Q +  Y SLY
Sbjct: 38  PTWRE-FAKEMDGVIRIGAVNCGDDRMLCR------SQGVNSYPSLY 77


>gnl|CDD|148951 pfam07617, DUF1579, Protein of unknown function (DUF1579).  A
           family of paralogous hypothetical proteins identified in
           Rhodopirellula baltica that also has members in
           Gloeobacter violaceus, Sinorhizobium meliloti and
           Agrobacterium tumefaciens.
          Length = 159

 Score = 27.7 bits (62), Expect = 7.0
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 6/32 (18%)

Query: 96  MGRNIFTTLLTILVDEWGYNLADKKQYVGTYI 127
            G   FTT++T+     GY+ A KK+YVGT+I
Sbjct: 58  PGGGPFTTIMTL-----GYDPA-KKEYVGTWI 83


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0782    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,644,793
Number of extensions: 1702062
Number of successful extensions: 1414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1412
Number of HSP's successfully gapped: 10
Length of query: 346
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 248
Effective length of database: 6,590,910
Effective search space: 1634545680
Effective search space used: 1634545680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)