RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10532
(346 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 0.001
Identities = 46/293 (15%), Positives = 85/293 (29%), Gaps = 117/293 (39%)
Query: 95 NMG----------RNIFTTLLTILVDEWGYNLADKKQYVGTYILLE--WLLEVYDDHTGK 142
MG ++++ D +G+++ D I++ L ++
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILD--------IVINNPVNLTIHFGGEKG 1681
Query: 143 LYIRLLEVYDDHTGKLYKVSSDPATRLEVIKLNEQLDTRLQQRQARETGIC---PVRREL 199
IR E Y ++ D + E K+ ++++ T + L
Sbjct: 1682 KRIR--ENYSAMI---FETIVDGKLKTE--KIFKEINEHS-------TSYTFRSE-KGLL 1726
Query: 200 ----FTQ---------CFDELIRQAAINC---------GE-------------------- 217
FTQ F++L + I GE
Sbjct: 1727 SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Query: 218 --RGLLLLRV--RDEFRQTIAGYQSLYESSIAFGM-RKALQ------------------- 253
RG+ + RDE ++ G ++ +A ++ALQ
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 254 -------VCSGHV-GVQGVSSFNKKSLNMKSKEGQDIAE-QGKFDMEEEIERL 297
V +G + + V+ LN + DI E Q +EE L
Sbjct: 1847 NVENQQYVAAGDLRALDTVT----NVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 32.3 bits (73), Expect = 0.29
Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 51/161 (31%)
Query: 1 M-RIVQIPIAAVKELVDRKSGSAGMPRSEE-RFS-RNAETDIVC----------RLLLEK 47
M I + V++ V++ + +P ++ S N ++V L L K
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSH--LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 48 KKKSRAERRARGWAVVETTVRSKPLGRGTY-PSTKITKSPYTLTPYSCNMGRNIFTTLLT 106
K ++R + + R K + P + SP+ + LL
Sbjct: 396 AKAPSGLDQSR----IPFSER-KLKFSNRFLP---VA-SPF-------------HSHLLV 433
Query: 107 -----ILVDEWGYNLADKKQYVGTYILLEWLLEVYDDHTGK 142
I D N++ + + + VYD G
Sbjct: 434 PASDLINKDLVKNNVSFNAK--------DIQIPVYDTFDGS 466
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.001
Identities = 45/248 (18%), Positives = 72/248 (29%), Gaps = 78/248 (31%)
Query: 98 RNIFTTLLTILVDEWGYNLADKKQYVGTYILLEWLLEVYDDHTGKLYIR-LLEV-YDDHT 155
++I + +E + + K GT L W L + + ++ +L + Y
Sbjct: 43 KSILSK------EEIDHIIMSKDAVSGTLRLF-WTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 156 GKLYKVSSDPATRLEVIKLNEQLDTRLQ---QRQARETGICPVRRELFTQCFDELIRQAA 212
+ P+ + EQ D RL Q A+ V R Q + +L RQA
Sbjct: 96 SPIKTEQRQPS--MMTRMYIEQRD-RLYNDNQVFAKY----NVSRL---QPYLKL-RQA- 143
Query: 213 INCGERGLLLLRVRDEFRQTIAGYQSLYESSIAFGMR---K---ALQVCSGHVGVQGVSS 266
LL +R + G+ K AL VC + VQ
Sbjct: 144 ---------LLELRPA------KNVLID------GVLGSGKTWVALDVCLSY-KVQCKMD 181
Query: 267 FN------------KKSLNM----------KSKEGQDIAEQGKFDMEEEIERLRGAYACQ 304
F + L M D + K + LR +
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 305 VY----LI 308
Y L+
Sbjct: 242 PYENCLLV 249
Score = 38.3 bits (88), Expect = 0.003
Identities = 50/326 (15%), Positives = 99/326 (30%), Gaps = 79/326 (24%)
Query: 33 RNAET----DIVCRLLLEKKKKSRAERRARGWAVVETTVRSKPLGRGTYPS--------- 79
+NA+ ++ C++LL + K + + A T + P
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLS---AATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 80 --TKITKSPY---TLTPYSCNM-GRNIFTTLLTILVDEWGYNLADKKQYVGTYILLEWLL 133
+ P T P ++ +I L T D W + DK + +E L
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW--DNWKHVNCDKLTTI-----IESSL 363
Query: 134 EVYDDHTGKLYIRLLEVYDDHTGKLYKVSSDPATRLEVI-----------KLNEQLDTRL 182
V + + L V+ + P L +I +N+ L
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSA----HI---PTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 183 QQRQARET--GICPVRRELFTQCFDE------LIRQAAINCGERGLLLLRVRDEFRQTIA 234
++Q +E+ I + EL + +E ++ I D +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT------FDSDDLIPPYLD 470
Query: 235 GYQSLYESSIAFGMRKALQVCSGHVGVQGVSSFNKKSLN---MKSK-EGQDIAEQGKFDM 290
Y Y S I ++ + ++ F L+ ++ K A +
Sbjct: 471 QY--FY-SHIGHHLKNIEH-------PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 291 EEEIERLRGAYACQVYLIPKEHTHYQ 316
+++L+ Y + Y I Y+
Sbjct: 521 LNTLQQLK-FY--KPY-ICDNDPKYE 542
Score = 28.3 bits (62), Expect = 5.4
Identities = 27/173 (15%), Positives = 52/173 (30%), Gaps = 31/173 (17%)
Query: 175 NEQLDTRLQQRQARETGICPVRRELFTQCFDELIRQAAINCGERGLLLLRVRDEFRQTI- 233
+ +D + Q + I V + F FD C + V+D + +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFD---------CKD-------VQDMPKSILS 47
Query: 234 -AGYQSLYESSIAFGMRKALQVCSGHVGVQGVSSFNKKSLN------MKSKEGQDIAEQG 286
+ S A L + V F ++ L M + +
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 287 KFDM-EEEIERLRGAYACQV---YLIPKEHTHYQVDLTL-QDHTHYQVDLTGM 334
M E+ +RL QV Y + + + ++ L + V + G+
Sbjct: 108 MTRMYIEQRDRLYN--DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.17
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 9/38 (23%)
Query: 142 KLYIRLLEVYDDHTGKLYKVSSDPATRLEVIKLNEQLD 179
K ++ L+ + KLY S PA + + ++
Sbjct: 19 KQALKKLQ----ASLKLYADDSAPA-----LAIKATME 47
>1q7e_A Hypothetical protein YFDW; structural genomics, intertwined dimer,
PSI, protein structu initiative; HET: MSE; 1.60A
{Escherichia coli} SCOP: c.123.1.1 PDB: 1pqy_A* 1q6y_A*
1pt7_A 1pt5_A 1pt8_A*
Length = 428
Score = 29.9 bits (68), Expect = 1.4
Identities = 9/20 (45%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 268 NKKS--LNMKSKEGQDIAEQ 285
NK+S LN K+ EG+++ E+
Sbjct: 68 NKRSIELNTKTAEGKEVMEK 87
>3ubm_A COAT2, formyl-COA:oxalate COA-transferase; HET: COA; 1.99A
{Acetobacter aceti}
Length = 456
Score = 29.6 bits (67), Expect = 1.8
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 268 NKKS--LNMKSKEGQDIAEQ 285
NK+S LN K+ EG+ + E+
Sbjct: 92 NKRSVELNTKTPEGKAVFEK 111
>2vjq_A Formyl-coenzyme A transferase; class III COA transferase; HET: EPE;
1.8A {Oxalobacter formigenes} PDB: 2vjp_A 2vjm_A*
2vjl_A* 2vjk_A* 1p5h_A 1p5r_A* 2vjn_A* 1t4c_A* 2vjo_A*
2vjm_B* 1vgr_A* 1t3z_A* 1t4c_B* 1vgq_A*
Length = 428
Score = 29.1 bits (66), Expect = 2.0
Identities = 10/20 (50%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Query: 268 NKKS--LNMKSKEGQDIAEQ 285
NK+S L+MK+ EG+++ EQ
Sbjct: 66 NKRSIELDMKTPEGKELLEQ 85
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 28.3 bits (63), Expect = 2.3
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 20/88 (22%)
Query: 134 EVYDDHTGKLYIRLLEVYD----DHTGKLYKVSSDPATRLEVIKLNEQLDTRLQQRQARE 189
E+++D T + ++++ D G SDP R+ + + T +Q + ++
Sbjct: 1 ELHNDDTRVVRVKVIAGIGLAKKDILGA-----SDPYVRVTLYDPMSGILTSVQTKTIKK 55
Query: 190 T-----------GICPVRRELFTQCFDE 206
+ + P R + + FDE
Sbjct: 56 SLNPKWNEEILFRVLPQRHRILFEVFDE 83
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 27.6 bits (61), Expect = 5.0
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 268 NKKSLNMKSKEGQDIAEQGKFDMEEEIERLR 298
N KS + + +++ KF EEE+
Sbjct: 10 NSKSGALSKEILEELQLNTKFS-EEELCSWY 39
>1xk7_A Crotonobetainyl-COA:carnitine COA-transferase; CAIB,
montreal-kingston bacterial structural genomics
initiative, BSGI, structural genomics; 1.60A
{Escherichia coli} SCOP: c.123.1.1 PDB: 1xk6_A 1xvt_A*
1xvu_A* 1xvv_A* 1xa3_A* 1xa4_A*
Length = 408
Score = 27.9 bits (63), Expect = 6.1
Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 268 NKKS--LNMKSKEGQDIAEQ 285
N + LN+ EG++ +
Sbjct: 68 NLHALSLNIFKDEGREAFLK 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.393
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,354,519
Number of extensions: 322643
Number of successful extensions: 573
Number of sequences better than 10.0: 1
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 15
Length of query: 346
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 252
Effective length of database: 4,077,219
Effective search space: 1027459188
Effective search space used: 1027459188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)