RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10532
         (346 letters)



>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain
          {Caenorhabditis elegans [TaxId: 6239]}
          Length = 277

 Score = 27.5 bits (60), Expect = 2.4
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 12 KELVDRKSGSAGMPRSEERFSRNAETDIVCRLLLEKKKKSR 52
          ++++DRK     +P+    + R    D V + L E      
Sbjct: 4  RQMLDRKLLLGNVPKQMTCYIREYHVDRVIKKLDEMCDLDS 44


>d1s7ma_ b.144.1.1 (A:) Autotransporter Hia {Haemophilus influenzae
           [TaxId: 727]}
          Length = 158

 Score = 26.9 bits (59), Expect = 2.7
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 79  STKITKSPYTLTPYSCNMGRNIFTTLLTIL 108
            T+I K   T+TP +     N  T  +T  
Sbjct: 3   KTEINKDGLTITPANGAGANNANTISVTKD 32


>d1tuwa_ d.58.4.8 (A:) Tetracenomycin polyketide synthesis protein
           TcmI {Streptomyces glaucescens [TaxId: 1907]}
          Length = 106

 Score = 25.5 bits (56), Expect = 4.6
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 143 LYIRLLEVYDDHTGKLYKVSSDPATRLEVIKLNEQL 178
           LY+ L+E  DD   +LY+  S P       ++NE++
Sbjct: 47  LYMHLIEADDDIMERLYQARSHP----LFQEVNERV 78


>d1hdha_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 525

 Score = 26.7 bits (57), Expect = 5.0
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 144 YIRLLEVYDDHTGKLYKVSSDPATRLEVIKLNEQLDTRLQQ---RQARETGI 192
            + L       T +LY ++ DP    ++          L +   R   ETG+
Sbjct: 473 AVYLPAPVGPATWQLYDLARDPGEIHDLADSQPGKLAELIEHWKRYVSETGV 524


>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 201

 Score = 26.0 bits (56), Expect = 6.1
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 268 NKKSLNMKSKEGQDIAEQGKFDMEEEIERLR 298
           N KS  +  +  +++    KF  EEE+    
Sbjct: 2   NSKSGALSKEILEELQLNTKFT-EEELSSWY 31


>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 480

 Score = 26.2 bits (57), Expect = 6.6
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 11/85 (12%)

Query: 213 INCGERGLLLLRVRDEFRQTIAGYQSLYESSIAFGMRKALQVCSGHVGVQGVSSFNKKSL 272
           INCG R +       E R  I         ++  G           VG QG    +   +
Sbjct: 95  INCGVRLIRTNLTEKEVRPRIKQLVDTLFKNVPSG-----------VGSQGRIKLHWTQI 143

Query: 273 NMKSKEGQDIAEQGKFDMEEEIERL 297
           +    +G   A    +  E ++ERL
Sbjct: 144 DDVLVDGAKWAVDNGYGWERDLERL 168


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0487    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,276,867
Number of extensions: 59109
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 7
Length of query: 346
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,226,816
Effective search space: 318972160
Effective search space used: 318972160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)