BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10533
(594 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NYP|A Chain A, 4th Lim Domain Of Pinch Protein
pdb|1U5S|B Chain B, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain And
Pinch-1 Lim4 Domain
Length = 66
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/64 (84%), Positives = 61/64 (95%)
Query: 275 MGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQL 334
MG+PICGACRRPIE RVV A+GK WHVEHFVCA+CEKPFLGHRHYE+KGLAYCETHY+QL
Sbjct: 3 MGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQL 62
Query: 335 FGNL 338
FG++
Sbjct: 63 FGDV 66
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 44/46 (95%)
Query: 407 STLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNL 452
+ +GK WHVEHFVCA+CEKPFLGHRHYE+KGLAYCETHY+QLFG++
Sbjct: 21 NAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDF 61
S+G C C E ++VN+ G+ WH + FVCA+C +PF G YE +G YCE +
Sbjct: 2 SMGVPICGACRRPIE--GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHY 59
Query: 62 HVLFA 66
+ LF
Sbjct: 60 NQLFG 64
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 22/25 (88%)
Query: 532 FGLRHYEKNGLAYCETHYHQLFGNL 556
G RHYE+ GLAYCETHY+QLFG++
Sbjct: 42 LGHRHYERKGLAYCETHYNQLFGDV 66
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 100 SLGNMYCFPLQRRFRARGEDRQTLTGGAWHQQCFVCAQCFRPFPGGIFYEFEG 152
S+G C +R R + G WH + FVCA+C +PF G YE +G
Sbjct: 2 SMGVPICGACRRPIEGRVVN---AMGKQWHVEHFVCAKCEKPFLGHRHYERKG 51
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 13/62 (20%)
Query: 134 VCAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRA 193
+C C RP + GRV+ AM WH + F C C K +G A
Sbjct: 7 ICGACRRP-------------IEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLA 53
Query: 194 LC 195
C
Sbjct: 54 YC 55
>pdb|2KBX|B Chain B, Solution Structure Of Ilk-Pinch Complex
Length = 70
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/67 (73%), Positives = 56/67 (83%)
Query: 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDF 61
+L + C RC GF P EKIVNSNGEL+H+QCFVCAQCF+ FP G+FYEFEGRKYCEHDF
Sbjct: 4 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDF 63
Query: 62 HVLFAPC 68
+LFAPC
Sbjct: 64 QMLFAPC 70
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 115 ARGEDRQTLTGGAWHQQCFVCAQCFRPFPGGIFYEFEG 152
A E G +H+QCFVCAQCF+ FP G+FYEFEG
Sbjct: 18 APAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEG 55
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 289 ERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 336
E++V + G+ +H + FVCA+C + F YE +G YCE + LF
Sbjct: 21 EKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 68
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 410 GKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 450
G+ +H + FVCA+C + F YE +G YCE + LF
Sbjct: 28 GELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 68
>pdb|1G47|A Chain A, 1st Lim Domain Of Pinch Protein
Length = 77
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 49/67 (73%), Positives = 56/67 (83%)
Query: 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDF 61
+L + C RC GF P EKIVNSNGEL+H+QCFVCAQCF+ FP G+FYEFEGRKYCEHDF
Sbjct: 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDF 67
Query: 62 HVLFAPC 68
+LFAPC
Sbjct: 68 QMLFAPC 74
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 115 ARGEDRQTLTGGAWHQQCFVCAQCFRPFPGGIFYEFEG 152
A E G +H+QCFVCAQCF+ FP G+FYEFEG
Sbjct: 22 APAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEG 59
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 258 YTANDMNELYCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHR 317
+ AN + C RC E++V + G+ +H + FVCA+C + F
Sbjct: 4 FMANALASATCERCKGGFAPA----------EKIVNSNGELYHEQCFVCAQCFQQFPEGL 53
Query: 318 HYEKKGLAYCETHYHQLFG 336
YE +G YCE + LF
Sbjct: 54 FYEFEGRKYCEHDFQMLFA 72
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 410 GKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 450
G+ +H + FVCA+C + F YE +G YCE + LF
Sbjct: 32 GELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72
>pdb|3IXE|B Chain B, Structural Basis Of Competition Between Pinch1 And
Pinch2 For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 72
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 51/63 (80%)
Query: 4 GNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHV 63
N C RC F P E+IVNSNGEL+H+ CFVCAQCFRPFP G+FYEFEGRKYCEHDF +
Sbjct: 10 ANAVCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQM 69
Query: 64 LFA 66
LFA
Sbjct: 70 LFA 72
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 102 GNMYCFPLQRRFRARGEDRQTLTGGAWHQQCFVCAQCFRPFPGGIFYEFEG 152
N C Q RF + E G +H+ CFVCAQCFRPFP G+FYEFEG
Sbjct: 10 ANAVCQRCQARF-SPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEG 59
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 279 ICGAC--RRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 336
+C C R ER+V + G+ +H FVCA+C +PF YE +G YCE + LF
Sbjct: 13 VCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFA 72
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 410 GKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 450
G+ +H FVCA+C +PF YE +G YCE + LF
Sbjct: 32 GELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFA 72
>pdb|3F6Q|B Chain B, Crystal Structure Of Integrin-Linked Kinase Ankyrin
Repeat Domain In Complex With Pinch1 Lim1 Domain
Length = 72
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 51/59 (86%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFA 66
C RC GF P EKIVNSNGEL+H+QCFVCAQCF+ FP G+FYEFEGRKYCEHDF +LFA
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 115 ARGEDRQTLTGGAWHQQCFVCAQCFRPFPGGIFYEFEG 152
A E G +H+QCFVCAQCF+ FP G+FYEFEG
Sbjct: 22 APAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEG 59
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 289 ERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 336
E++V + G+ +H + FVCA+C + F YE +G YCE + LF
Sbjct: 25 EKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 410 GKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 450
G+ +H + FVCA+C + F YE +G YCE + LF
Sbjct: 32 GELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72
>pdb|2COR|A Chain A, Solution Structure Of The Third Lim Domain Of Particularly
Interesting New Cys-His Protein
Length = 79
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 10/75 (13%)
Query: 203 KAVGFGKHMCHKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTAND 262
KA G GK++C KCH +ID++PL F+ + YHP HFNC +CG EL +DARE+K
Sbjct: 9 KARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELK--------- 59
Query: 263 MNELYCLRCHDKMGI 277
ELYCL CHDKMG+
Sbjct: 60 -GELYCLPCHDKMGV 73
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 275 MGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYC 327
+G IC C I+E+ + +H +HF CA C K E KG YC
Sbjct: 13 LGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYC 64
>pdb|2D8X|A Chain A, Solution Structure Of The Second Lim Domain Of
Particularly Interesting New Cys-His Protein (Pinch)
Length = 70
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 44/55 (80%)
Query: 152 GEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVG 206
GEF+IGRVIKAMN +WHP+CFRC+ C + LAD+GF+++ GR LC C+ + KA G
Sbjct: 12 GEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASG 66
>pdb|1X3H|A Chain A, Solution Structure Of The Lim Domain Of Human Leupaxin
Length = 80
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%)
Query: 275 MGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQL 334
M P CG C RP+ E ++A+ WH E FVC C F +E G +CE HYH
Sbjct: 13 MFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72
Query: 335 FGN 337
G+
Sbjct: 73 RGS 75
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 19 EKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFH 62
E +++ +WH +CFVC CF F G F+E +GR +CE +H
Sbjct: 27 ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYH 70
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 127 AWHQQCFVCAQCFRPFPGGIFYEFEG 152
WH +CFVC CF F G F+E +G
Sbjct: 36 VWHPECFVCGDCFTSFSTGSFFELDG 61
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 155 VIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALC 195
V+ + AM+ WHP+CF C C + F GR C
Sbjct: 25 VLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFC 65
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 407 STLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGN 451
S + WH E FVC C F +E G +CE HYH G+
Sbjct: 31 SAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGS 75
>pdb|2DAR|A Chain A, Solution Structure Of First Lim Domain Of Enigma-Like Pdz
And Lim Domains Protein
Length = 90
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 259 TANDMNELYCLRCHDKMG--IPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGH 316
++ D + L H G P+C C + I + ALGK WH E F CA C+
Sbjct: 5 SSGDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYI 64
Query: 317 RHYEKKGLAYCETHYHQLFGN 337
E+KG YCE Y + F +
Sbjct: 65 GFVEEKGALYCELCYEKFFAS 85
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 379 LCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGL 438
+C CNQVI G AL GK WH E F CA C+ E+KG
Sbjct: 27 MCAHCNQVIRGPFLVAL--------------GKSWHPEEFNCAHCKNTMAYIGFVEEKGA 72
Query: 439 AYCETHYHQLFGN 451
YCE Y + F +
Sbjct: 73 LYCELCYEKFFAS 85
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 153 EFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHEC 198
+ + G + A+ +WHP+ F C HC +A +GF+ +G C C
Sbjct: 33 QVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELC 78
>pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
Length = 169
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 277 IPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLF 335
IP C C + I ++ ++ L +HWH CA C+ L R + + G YC+ + + F
Sbjct: 6 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQ-LADRCFSRAGSVYCKEDFFKRF 64
Query: 336 GNLCFVCNQVI 346
G C C Q I
Sbjct: 65 GTKCTACQQGI 75
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 401 VHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQ 458
+ F L +HWH CA C+ L R + + G YC+ + + FG C C Q
Sbjct: 17 LDKFILKVLDRHWHSSCLKCADCQMQ-LADRCFSRAGSVYCKEDFFKRFGTKCTACQQ 73
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 159 VIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHMCHKCHGL 218
++K ++ +WH C +C C +LAD F R+ G C E F K KC
Sbjct: 21 ILKVLDRHWHSSCLKCADCQMQLADRCFSRA-GSVYCKE--------DFFKRFGTKCTAC 71
Query: 219 IDDKP-----LKFRGEVYHPYHFNCTSCGTELNS 247
P K + VYH + F C C +L +
Sbjct: 72 QQGIPPTQVVRKAQDFVYHLHCFACIICNRQLAT 105
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGI-FYEFE-GRKYCEHDFHV 63
C+ C +G P + + + ++H CF C C R G FY E GR C+ D+
Sbjct: 68 CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYET 125
>pdb|1IBI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, 15
Minimized Model Structures
pdb|1QLI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, Minimized
Average Structure
Length = 113
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 4 GNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHV 63
G CSRC + EK++ + G+ WH+ CF CA+C + E EG YC+ +
Sbjct: 35 GAEKCSRCGDSVYAAEKVIGA-GKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAK 93
Query: 64 LFAP 67
F P
Sbjct: 94 NFGP 97
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 289 ERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQVIG 347
E+V+ A GK WH F CA+C K EK+G YC+ Y + FG F Q G
Sbjct: 50 EKVIGA-GKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQGAG 107
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%)
Query: 410 GKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQNHTISLHV 466
GK WH F CA+C K EK+G YC+ Y + FG F Q +H
Sbjct: 56 GKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQGAGALVHA 112
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 154 FVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQ---AKAVGFGK 209
+ +VI A WH CFRC C K L +G C C A+ K G+G+
Sbjct: 47 YAAEKVIGAGKP-WHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQ 104
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 124 TGGAWHQQCFVCAQCFRPFPGGIFYEFEGEF 154
G WH+ CF CA+C + E EGE
Sbjct: 55 AGKPWHKNCFRCAKCGKSLESTTLTEKEGEI 85
>pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 277 IPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLF 335
IP+C C + I +R ++ AL +HWH + C+ C P L R + + YC+ + + F
Sbjct: 60 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVP-LAERCFSRGESVYCKDDFFKRF 118
Query: 336 GNLCFVCN 343
G C C
Sbjct: 119 GTKCAACQ 126
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 401 VHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCN 457
+ F L +HWH + C+ C P L R + + YC+ + + FG C C
Sbjct: 71 LDRFILKALDRHWHSKCLKCSDCHVP-LAERCFSRGESVYCKDDFFKRFGTKCAACQ 126
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 159 VIKAMNANWHPKCFRCEHCSKELADLGFIRSQG 191
++KA++ +WH KC +C C LA+ F R +
Sbjct: 75 ILKALDRHWHSKCLKCSDCHVPLAERCFSRGES 107
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFP-GGIFYEFE-GRKYCEHDFHV 63
C+ C G P + + + ++H CF C C R G FY E R C+ D+
Sbjct: 122 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 179
>pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 277 IPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLF 335
IP+C C + I +R ++ AL +HWH + C+ C P L R + + YC+ + + F
Sbjct: 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVP-LAERCFSRGESVYCKDDFFKRF 64
Query: 336 GNLCFVCN 343
G C C
Sbjct: 65 GTKCAACQ 72
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Query: 401 VHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQNH 460
+ F L +HWH + C+ C P L R + + YC+ + + FG C C
Sbjct: 17 LDRFILKALDRHWHSKCLKCSDCHVP-LAERCFSRGESVYCKDDFFKRFGTKCAACQ--- 72
Query: 461 TISLHVSSREAVLSSDSSVFGLRHYE----KKGLAYCETHYHQLFGNLCFVCNQDH 512
L + + V + V+ L + K+ LA + Y L + VC D+
Sbjct: 73 ---LGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFY--LMEDSRLVCKADY 123
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 14/94 (14%)
Query: 159 VIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHM---CHKC 215
++KA++ +WH KC +C C LA+ F R + C + F K C C
Sbjct: 21 ILKALDRHWHSKCLKCSDCHVPLAERCFSRGES-VYCKD--------DFFKRFGTKCAAC 71
Query: 216 HGLIDDKPLKFRGE--VYHPYHFNCTSCGTELNS 247
I + R + VYH + F C C +L +
Sbjct: 72 QLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLAT 105
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFP-GGIFYEFE-GRKYCEHDFHV 63
C+ C G P + + + ++H CF C C R G FY E R C+ D+
Sbjct: 68 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 125
>pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCF-RPFPGGIFYEFEGRKYCEHD 60
CS C + E ++ + G ++H +CF C+ C R PG F+ G +CEHD
Sbjct: 72 CSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 125
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 26/145 (17%)
Query: 280 CGACRRPIEER-VVTALGKHWHVEHFVCARCEKPF--LGHRHYEKKGLAYCETHYHQLFG 336
C C I +R ++ A+ +WH C+ C+ +G Y K G+ C Y +LFG
Sbjct: 8 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 67
Query: 337 N--LCFVCNQVIGGDESHYITSRELTYKKGLGYCESHYHQLFGNLCFVC----NQVIGGD 390
N C C Q I E + + K CF C N+++ GD
Sbjct: 68 NSGACSACGQSIPASELVMRAQGNVYHLK----------------CFTCSTCRNRLVPGD 111
Query: 391 LFTALNKA-WCVHHFACSTLGKHWH 414
F +N + +C H + + H +
Sbjct: 112 RFHYINGSLFCEHDRPTALINGHLN 136
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 159 VIKAMNANWHPKCFRCEHCSKELADLGFIR--SQGRALCHECNAQAKAVGFGKHMCHKCH 216
++ AM++ WH +C +C C +L D+G G LC N + G C C
Sbjct: 20 LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCR--NDYIRLFG-NSGACSACG 76
Query: 217 GLIDDKPLKFR--GEVYHPYHFNCTSCGTEL 245
I L R G VYH F C++C L
Sbjct: 77 QSIPASELVMRAQGNVYHLKCFTCSTCRNRL 107
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 401 VHHFACSTLGKHWHVEHFVCARCEKPF--LGHRHYEKKGLAYCETHYHQLFGN--LCFVC 456
F + +WH C+ C+ +G Y K G+ C Y +LFGN C C
Sbjct: 16 ADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSAC 75
Query: 457 NQNHTISLHVSSREAVLSSDSSVFGLR 483
Q+ + + E V+ + +V+ L+
Sbjct: 76 GQS------IPASELVMRAQGNVYHLK 96
>pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
Length = 195
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCF-RPFPGGIFYEFEGRKYCEHD 60
CS C + E ++ + G ++H +CF C+ C R PG F+ G +CEHD
Sbjct: 70 CSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 123
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 26/145 (17%)
Query: 280 CGACRRPIEER-VVTALGKHWHVEHFVCARCEKPF--LGHRHYEKKGLAYCETHYHQLFG 336
C C I +R ++ A+ +WH C+ C+ +G Y K G+ C Y +LFG
Sbjct: 6 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 65
Query: 337 N--LCFVCNQVIGGDESHYITSRELTYKKGLGYCESHYHQLFGNLCFVC----NQVIGGD 390
N C C Q I E + + K CF C N+++ GD
Sbjct: 66 NSGACSACGQSIPASELVMRAQGNVYHLK----------------CFTCSTCRNRLVPGD 109
Query: 391 LFTALNKA-WCVHHFACSTLGKHWH 414
F +N + +C H + + H +
Sbjct: 110 RFHYINGSLFCEHDRPTALINGHLN 134
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 159 VIKAMNANWHPKCFRCEHCSKELADLGFIR--SQGRALCHECNAQAKAVGFGKHMCHKCH 216
++ AM++ WH +C +C C +L D+G G LC N + G C C
Sbjct: 18 LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCR--NDYIRLFG-NSGACSACG 74
Query: 217 GLIDDKPLKFR--GEVYHPYHFNCTSCGTEL 245
I L R G VYH F C++C L
Sbjct: 75 QSIPASELVMRAQGNVYHLKCFTCSTCRNRL 105
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 401 VHHFACSTLGKHWHVEHFVCARCEKPF--LGHRHYEKKGLAYCETHYHQLFGN--LCFVC 456
F + +WH C+ C+ +G Y K G+ C Y +LFGN C C
Sbjct: 14 ADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSAC 73
Query: 457 NQNHTISLHVSSREAVLSSDSSVFGLR 483
Q+ + + E V+ + +V+ L+
Sbjct: 74 GQS------IPASELVMRAQGNVYHLK 94
>pdb|1CTL|A Chain A, Structure Of The Carboxy-Terminal Lim Domain From The
Cysteine Rich Protein Crp
Length = 85
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 4 GNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHV 63
G+ C RC + EK++ + G+ WH+ CF CA+C + + +G YC+ +
Sbjct: 7 GSDGCPRCGQAVYAAEKVIGA-GKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAK 65
Query: 64 LFAP 67
F P
Sbjct: 66 NFGP 69
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 276 GIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLF 335
G P CG E+ V GK WH F CA+C K +K G YC+ Y + F
Sbjct: 10 GCPRCGQAVYAAEK--VIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNF 67
Query: 336 G 336
G
Sbjct: 68 G 68
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 150 FEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQ 201
+ E VIG +WH CFRC C K L G C C A+
Sbjct: 19 YAAEKVIG-----AGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAK 65
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 410 GKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 450
GK WH F CA+C K +K G YC+ Y + FG
Sbjct: 28 GKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG 68
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 124 TGGAWHQQCFVCAQCFRPFPGGIFYEFEGEF 154
G +WH+ CF CA+C + + +GE
Sbjct: 27 AGKSWHKSCFRCAKCGKSLESTTLADKDGEI 57
>pdb|1B8T|A Chain A, Solution Structure Of The Chicken Crp1
Length = 192
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 4 GNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHV 63
G+ C RC + EK++ + G+ WH+ CF CA+C + + +G YC+ +
Sbjct: 114 GSDGCPRCGQAVYAAEKVIGA-GKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAK 172
Query: 64 LFAP 67
F P
Sbjct: 173 NFGP 176
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 150 FEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQ 201
+ E VIG +WH CFRC C K L G C C A+
Sbjct: 126 YAAEKVIG-----AGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAK 172
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 410 GKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 450
GK WH F CA+C K +K G YC+ Y + FG
Sbjct: 135 GKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG 175
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 124 TGGAWHQQCFVCAQCFRPFPGGIFYEFEGEF 154
G +WH+ CF CA+C + + +GE
Sbjct: 134 AGKSWHKSCFRCAKCGKSLESTTLADKDGEI 164
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 61/178 (34%), Gaps = 26/178 (14%)
Query: 160 IKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHMCHKCHGLI 219
++ +++H CF C C K L ++ AV + C C+G
Sbjct: 23 VQCEGSSFHKSCFLCMVCKKNL-----------------DSTTVAVHGDEIYCKSCYGKK 65
Query: 220 DDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKS-RPGYTANDMNELYCLRCHDKMGIP 278
K +G T G L E +S RP N + G P
Sbjct: 66 YGPKGKGKGMGAGTLS---TDKGESLGIKYEEGQSHRP---TNPNASRMAQKVGGSDGCP 119
Query: 279 ICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 336
CG E+ V GK WH F CA+C K +K G YC+ Y + FG
Sbjct: 120 RCGQAVYAAEK--VIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG 175
>pdb|2DJ7|A Chain A, Solution Structure Of 3rd Lim Domain Of Actin-Binding Lim
Protein 3
Length = 80
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 280 CGACRRPIEE-RVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGN 337
C C+ I+ + + AL K WHV F C C G + K G+ YCE+ YH FG+
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGS 75
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 408 TLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGN 451
L K WHV F C C G + K G+ YCE+ YH FG+
Sbjct: 33 ALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGS 75
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 4 GNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHV 63
G +C+ C E + + ++ + + WH CF C C G + +G YCE D+H
Sbjct: 14 GPSHCAGCKEEIKHGQSLLALDKQ-WHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHA 71
Query: 64 LFA 66
F
Sbjct: 72 QFG 74
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 153 EFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALC 195
E G+ + A++ WH CF+C+ CS L +I G C
Sbjct: 24 EIKHGQSLLALDKQWHVSCFKCQTCSVILTGE-YISKDGVPYC 65
>pdb|1CXX|A Chain A, Mutant R122a Of Quail Cysteine And Glycine-Rich Protein,
Nmr, Minimized Structure
Length = 113
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 4 GNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHV 63
G CS C + EK++ + G+ WH+ CF CA+C + E EG YC+ +
Sbjct: 35 GAEKCSACGDSVYAAEKVIGA-GKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAK 93
Query: 64 LFAP 67
F P
Sbjct: 94 NFGP 97
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 276 GIPICGACRRPI--EERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQ 333
G C AC + E+V+ A GK WH F CA+C K EK+G YC+ Y +
Sbjct: 35 GAEKCSACGDSVYAAEKVIGA-GKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAK 93
Query: 334 LFGNLCFVCNQVIG 347
FG F Q G
Sbjct: 94 NFGPKGFGYGQGAG 107
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%)
Query: 410 GKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQNHTISLHV 466
GK WH F CA+C K EK+G YC+ Y + FG F Q +H
Sbjct: 56 GKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQGAGALVHA 112
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 154 FVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQ---AKAVGFGK 209
+ +VI A WH CFRC C K L +G C C A+ K G+G+
Sbjct: 47 YAAEKVIGAGKP-WHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQ 104
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 124 TGGAWHQQCFVCAQCFRPFPGGIFYEFEGEF 154
G WH+ CF CA+C + E EGE
Sbjct: 55 AGKPWHKNCFRCAKCGKSLESTTLTEKEGEI 85
>pdb|2D8Z|A Chain A, Solution Structure Of The Third Lim Domain Of Four And A
Half Lim Domains Protein 2 (Fhl-2)
Length = 70
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 276 GIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLF 335
G C C++PI VT + WH E FVC C K G R + AYC + L+
Sbjct: 4 GSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63
Query: 336 GN 337
+
Sbjct: 64 AS 65
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 411 KHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGN 451
+ WH E FVC C K G R + AYC + L+ +
Sbjct: 25 QPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAS 65
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 27 ELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFA 66
+ WH++CFVC C + G F + YC + F L+A
Sbjct: 25 QPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYA 64
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 15/73 (20%)
Query: 135 CAQCFRPFP-GGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRA 193
C QC +P GG+ Y + WH +CF C C K+L+ F A
Sbjct: 8 CVQCKKPITTGGVTYREQ--------------PWHKECFVCTACRKQLSGQRFTARDDFA 53
Query: 194 LCHECNAQAKAVG 206
C C A G
Sbjct: 54 YCLNCFCDLYASG 66
>pdb|1V6G|A Chain A, Solution Structure Of The Lim Domain Of The Human Actin
Binding Lim Protein 2
Length = 81
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 14/57 (24%)
Query: 371 HYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPF 427
Y +L+G CF C+Q I G++ +A LGK +H + FVCA C PF
Sbjct: 9 DYQRLYGTRCFSCDQFIEGEVVSA--------------LGKTYHPDCFVCAVCRLPF 51
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 257 GYTANDMNELYCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPF 313
G + D LY RC +C + IE VV+ALGK +H + FVCA C PF
Sbjct: 4 GSSGLDYQRLYGTRCF---------SCDQFIEGEVVSALGKTYHPDCFVCAVCRLPF 51
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 18 EEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRK 55
E ++V++ G+ +H CFVCA C PFP G F G++
Sbjct: 26 EGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKE 63
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 153 EFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRA-LCHECNAQAKAVG 206
+F+ G V+ A+ +HP CF C C + G+ +C +C+ G
Sbjct: 23 QFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSG 77
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
G +H CFVCA C PFP G F G+
Sbjct: 34 GKTYHPDCFVCAVCRLPFPPGDRVTFNGK 62
>pdb|2CUQ|A Chain A, Solution Structure Of Second Lim Domain From Human
Skeletal Muscle Lim-Protein 2
Length = 80
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 271 CHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETH 330
C++ P C C + + + VT + WH E VC C+ P G + + YC
Sbjct: 9 CYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVAC 68
Query: 331 YHQLFGN 337
+ +LF +
Sbjct: 69 FGELFAS 75
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFA 66
C+RC++ + V + WH++C VC C P G F + YC F LFA
Sbjct: 18 CARCSKTLT--QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFA 74
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 411 KHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGN 451
+ WH E VC C+ P G + + YC + +LF +
Sbjct: 35 QPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAS 75
>pdb|2CUP|A Chain A, Solution Structure Of The Skeletal Muscle Lim-Protein 1
Length = 101
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 164 NANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHMCHKCHGLI--DD 221
N WH CFRC C LA+ F+ + LC++C + + C C I D
Sbjct: 26 NRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSP-----KCKGCFKAIVAGD 80
Query: 222 KPLKFRGEVYHPYHFNCTSCG 242
+ ++++G V+H F+ S G
Sbjct: 81 QNVEYKGTVWHKDCFSGPSSG 101
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYC 57
S G+ C C + + K V+ WH CF CA+C P F + + C
Sbjct: 2 SSGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILC 57
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 128 WHQQCFVCAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRC 174
WH CF CA+C P F + + + + ++ PKC C
Sbjct: 29 WHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDS---PKCKGC 72
>pdb|1IML|A Chain A, Cysteine Rich Intestinal Protein, Nmr, 48 Structures
Length = 76
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHD-FHVLFA 66
C +C++ E+ V S G+ WH+ C C +C + G E EG+ YC H + +F
Sbjct: 3 CPKCDKEVYFAER-VTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61
Query: 67 P 67
P
Sbjct: 62 P 62
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 278 PICGACRRPI--EERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETH-YHQL 334
P C C + + ERV T+LGK WH C +C K H E +G YC Y +
Sbjct: 1 PKCPKCDKEVYFAERV-TSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAM 59
Query: 335 FGNLCFVCNQVIGGDESH 352
FG F GG ESH
Sbjct: 60 FGPKGF----GRGGAESH 73
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 153 EFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALC-HEC-NAQAKAVGFGK 209
E + ++ +WH C +CE C K L G +G+ C H C +A GFG+
Sbjct: 9 EVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGR 67
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 407 STLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETH-YHQLFGNLCF 454
++LGK WH C +C K H E +G YC Y +FG F
Sbjct: 17 TSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGF 65
>pdb|2XJY|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, P21
Crystal Form
pdb|2XJZ|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|B Chain B, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|C Chain C, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|D Chain D, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|E Chain E, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
Length = 131
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 277 IPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPF--LGHRHYEKKGLAYCETHYHQ 333
+ CG C++ I +R + A+ ++WH + C C +G R Y K G C Y +
Sbjct: 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 61
Query: 334 LFGN--LCFVCNQVI 346
LFG LC C++ I
Sbjct: 62 LFGQDGLCASCDKRI 76
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 160 IKAMNANWHPKCFRCEHCSKELADLG--FIRSQGRALCHECNAQAKAVGFGKH-MCHKCH 216
+KA++ WH C C+ C L ++G GR LC + FG+ +C C
Sbjct: 18 LKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRL----FGQDGLCASCD 73
Query: 217 GLID--DKPLKFRGEVYHPYHFNCTSC 241
I + ++ + +VYH F C +C
Sbjct: 74 KRIRAYEMTMRVKDKVYHLECFKCAAC 100
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 15/96 (15%)
Query: 355 TSRELTYKKGLGYCESHYHQLFGN--LCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKH 412
R L YK G C Y +LFG LC C++ I T K K
Sbjct: 42 VGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVK------------DKV 89
Query: 413 WHVEHFVCARCEKPF-LGHRHYEKKGLAYCETHYHQ 447
+H+E F CA C+K F +G R+ CE ++
Sbjct: 90 YHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 125
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 17/113 (15%)
Query: 407 STLGKHWHVEHFVCARCEKPF--LGHRHYEKKGLAYCETHYHQLFGN--LCFVCNQNHTI 462
+ ++WH + C C +G R Y K G C Y +LFG LC C++
Sbjct: 19 KAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDK---- 74
Query: 463 SLHVSSREAVLSSDSSVFGLRHYEKKGLAYCETHY----HQLFGNLCFVCNQD 511
+ + E + V+ H E A C+ H+ L N VC QD
Sbjct: 75 --RIRAYEMTMRVKDKVY---HLECFKCAACQKHFCVGDRYLLINSDIVCEQD 122
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 212 CHKCHGLIDDKP-LKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLR 270
C C I D+ LK + +H +C CG L R + + G + L R
Sbjct: 5 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL---R 61
Query: 271 CHDKMGIPICGACRRPIE--ERVVTALGKHWHVEHFVCARCEKPF-LGHRHYEKKGLAYC 327
+ G+ C +C + I E + K +H+E F CA C+K F +G R+ C
Sbjct: 62 LFGQDGL--CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVC 119
Query: 328 ETHYHQ 333
E ++
Sbjct: 120 EQDIYE 125
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPF-PGGIFYEFEGRKYCEHDFH 62
C+ C++ E + +++H +CF CA C + F G + CE D +
Sbjct: 69 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 124
>pdb|1X64|A Chain A, Solution Structure Of The Lim Domain Of Alpha-Actinin-2
Associated Lim Protein
Length = 89
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 152 GEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVG 206
G ++G V+KA + HP+CF C C+ L G+ +G C E +A+A+ G
Sbjct: 32 GSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYC-ETHARARTSG 85
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 277 IPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETH 330
+P+C C I VV A K+ H E FVCA C ++ +G YCETH
Sbjct: 25 MPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETH 78
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCE 58
C +C G +V + + H +CFVCA C ++ EG YCE
Sbjct: 28 CDKCGSGIV--GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCE 76
>pdb|2D8Y|A Chain A, Solution Structure Of The Lim Domain Of Epithelial
Protein Lost In Neoplasm
Length = 91
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLF 65
C C + P E+++ +N +++H CF C+ C G + GR YC+ F+ LF
Sbjct: 18 CVECQKTVYPMERLL-ANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLF 74
>pdb|2L4Z|A Chain A, Nmr Structure Of Fusion Of Ctip (641-685) To Lmo4-Lim1
(18-82)
Length = 123
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 280 CGACRRPIEER-VVTALGKHWHVEHFVCARCEKPF--LGHRHYEKKGLAYCETHYHQLFG 336
C C I +R ++ A+ +WH C+ C+ +G Y K G+ C Y +LFG
Sbjct: 64 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 159 VIKAMNANWHPKCFRCEHCSKELADLG 185
++ AM++ WH +C +C C +L D+G
Sbjct: 76 LLYAMDSYWHSRCLKCSSCQAQLGDIG 102
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 404 FACSTLGKHWHVEHFVCARCEKPF--LGHRHYEKKGLAYCETHYHQLFG 450
F + +WH C+ C+ +G Y K G+ C Y +LFG
Sbjct: 75 FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123
>pdb|1X4K|A Chain A, Solution Structure Of Lim Domain In Lim-Protein 3
Length = 72
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYC 57
S G+ C C + P + + G WH+ CF+C +C +P F + + +C
Sbjct: 2 SSGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFC 57
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 158 RVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVG 206
R ++ ++WH CF C C + + FI + C C + A G
Sbjct: 20 RKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASG 68
>pdb|2CU8|A Chain A, Solution Structure Of The Lim Domain Of Human
Cysteine-Rich Protein 2
Length = 76
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 160 IKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHE 197
+ ++ +WH C +CE CSK L G G+ CH+
Sbjct: 25 VSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHK 62
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 292 VTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETH-YHQLFGN 337
V++LGK WH C RC K H E G +C Y LFG+
Sbjct: 25 VSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGS 71
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYC 57
C +C++ EK V+S G+ WH+ C C +C + G E +G+ +C
Sbjct: 12 CPKCDKTVYFAEK-VSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFC 60
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 407 STLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETH-YHQLFGN 451
S+LGK WH C RC K H E G +C Y LFG+
Sbjct: 26 SSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGS 71
>pdb|1M3V|A Chain A, Flin4: Fusion Of The Lim Binding Domain Of Ldb1 And The N-
Terminal Lim Domain Of Lmo4
Length = 122
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 159 VIKAMNANWHPKCFRCEHCSKELADLG 185
++ AM++ WH +C +C C +L D+G
Sbjct: 20 LLYAMDSYWHSRCLKCSSCQAQLGDIG 46
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 280 CGACRRPIEER-VVTALGKHWHVEHFVCARCEKPF--LGHRHYEKKGLAYCETHYHQLF 335
C C I +R ++ A+ +WH C+ C+ +G Y K G+ C Y +LF
Sbjct: 8 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 66
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 404 FACSTLGKHWHVEHFVCARCEKPF--LGHRHYEKKGLAYCETHYHQLF 449
F + +WH C+ C+ +G Y K G+ C Y +LF
Sbjct: 19 FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 66
>pdb|1X68|A Chain A, Solution Structures Of The C-Terminal Lim Domain Of Human
Fhl5 Protein
Length = 76
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 135 CAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRAL 194
C C +P G + I ++ WH +CF C CS L GF+
Sbjct: 8 CVACSKPISG---------LTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIF 58
Query: 195 CHECNA 200
C +C +
Sbjct: 59 CQKCGS 64
>pdb|2O13|A Chain A, Solution Structure Of The C-Terminal Lim Domain Of
MlpCRP3
Length = 58
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCE 58
C RC + EK++ G+ WH+ CF CA C + + +G YC+
Sbjct: 2 CPRCGKSVYAAEKVMG-GGKPWHKTCFRCAICGKSLESTNVTDKDGELYCK 51
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 167 WHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQ 201
WH CFRC C K L G C C A+
Sbjct: 22 WHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAK 56
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 278 PICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLF 335
P CG E+ V GK WH F CA C K +K G YC+ Y + F
Sbjct: 3 PRCGKSVYAAEK--VMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNF 58
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 410 GKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLF 449
GK WH F CA C K +K G YC+ Y + F
Sbjct: 19 GKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNF 58
>pdb|1X4L|A Chain A, Solution Structure Of Lim Domain In Four And A Half Lim
Domains Protein 2
Length = 72
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 167 WHPKCFRCEHCSKELADLGFIRSQGRALCHEC 198
WH CF C+ CS L GF+ + LC +C
Sbjct: 31 WHNDCFNCKKCSLSLVGRGFLTERDDILCPDC 62
>pdb|2IYB|E Chain E, Structure Of Complex Between The 3rd Lim Domain Of Tes
And The Evh1 Domain Of Mena
pdb|2IYB|F Chain F, Structure Of Complex Between The 3rd Lim Domain Of Tes
And The Evh1 Domain Of Mena
pdb|2IYB|G Chain G, Structure Of Complex Between The 3rd Lim Domain Of Tes
And The Evh1 Domain Of Mena
pdb|2IYB|H Chain H, Structure Of Complex Between The 3rd Lim Domain Of Tes
And The Evh1 Domain Of Mena
Length = 65
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 6 MYCSRCNEGFEPEEKIVNSNGELWH--QQCFVCAQCFRPFPGGIFYEFEGRKYCE 58
+ C C+ +PE + V N WH +CF+C+ C + G F EG +C
Sbjct: 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCS 57
>pdb|2XQN|T Chain T, Complex Of The 2nd And 3rd Lim Domains Of Tes With The
Evh1 Domain Of Mena And The N-Terminal Domain Of
Actin-Like Protein Arp7a
Length = 126
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 16/128 (12%)
Query: 209 KHMCHKCHGLI-DDKPLKFRGEVYHPYHFNCTSCGTELNSDA-REVKSRPGYTANDMNEL 266
K C C LI ++ + + +H HF C C + L + V +P
Sbjct: 3 KPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKP---------- 52
Query: 267 YCLRCHDKMGIPICGACRRPIEERV--VTALGKHWH--VEHFVCARCEKPFLGHRHYEKK 322
C C+ K +C C I+ V VT WH E F+C+ C K +G + +
Sbjct: 53 VCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVE 112
Query: 323 GLAYCETH 330
G+ +C
Sbjct: 113 GMVFCSVE 120
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 161 KAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHMCHKCHGLID 220
+A N NWH K F C C LA ++ + +C C + AV +C CH ID
Sbjct: 20 QAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAV-----VCQGCHNAID 74
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 6 MYCSRCNEGFEPEEKIVNSNGELWH--QQCFVCAQCFRPFPGGIFYEFEGRKYC 57
+ C C+ +PE + V N WH +CF+C+ C + G F EG +C
Sbjct: 64 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFC 117
>pdb|1WYH|A Chain A, Solution Structure Of The Lim Domain From Human Skeletal
Muscle Lim-Protein 2
Length = 72
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 13 EGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFA 66
E P + + G+ WH+ CF+C+ C +P F +G YC + FA
Sbjct: 13 ETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFA 66
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 290 RVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGN 337
R + G+ WH F+C+ CE+P KG YC Y F +
Sbjct: 20 RKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAS 67
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 410 GKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGN 451
G+ WH F+C+ CE+P KG YC Y F +
Sbjct: 26 GQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAS 67
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 158 RVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVG 206
R ++ WH CF C C + L F+ +G C C A G
Sbjct: 20 RKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASG 68
>pdb|2DLO|A Chain A, Solution Structure Of The Second Lim Domain Of Human
Thyroid Receptor-Interacting Protein 6
Length = 81
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 280 CGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHR-HYEKKGLAYCETHYHQLFGN 337
C C +PI +R++ A+GK +H F C C + G + +C +H+ F +
Sbjct: 18 CATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFAS 76
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIF-YEFEGRKYCEHDFHVLFA 66
C+ C++ ++I+ + G+ +H CF C C R G F + + +C DFH FA
Sbjct: 18 CATCSQPIL--DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA 75
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 155 VIGRVIKAMNANWHPKCFRCEHCSKELADLGF 186
++ R+++AM +HP CF C C + L + F
Sbjct: 25 ILDRILRAMGKAYHPGCFTCVVCHRGLDGIPF 56
>pdb|2CUR|A Chain A, Solution Structure Of Skeletal Muscle Lim-Protein 1
Length = 69
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYC 57
S G+ C +CN+ + + WH CFVC C + G F E + YC
Sbjct: 2 SSGSSGCVKCNKAITSGG--ITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYC 55
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 21/52 (40%)
Query: 280 CGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHY 331
C C + I +T + WH + FVC C K G R + YC Y
Sbjct: 8 CVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCY 59
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 167 WHPKCFRCEHCSKELADLGFIRSQGRALCHEC 198
WH CF C CSK+LA F + + C +C
Sbjct: 27 WHADCFVCVTCSKKLAGQRFTAVEDQYYCVDC 58
>pdb|2EGQ|A Chain A, Solution Structure Of The Fourth Lim Domain From Human
Four And A Half Lim Domains 1
Length = 77
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 135 CAQCFRPFPGGIFYEFEGEFVIGRVIKAMNA-NWHPKCFRCEHCSKELADLGFIRSQGRA 193
CA C P G F G + A +WH CF C+ CS LA+ F+ Q +
Sbjct: 18 CAGCKNPITG---------FGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQV 68
Query: 194 LCHEC 198
C +C
Sbjct: 69 YCPDC 73
>pdb|1WIG|A Chain A, Solution Structure Of Rsgi Ruh-019, A Lim Domain Of Actin
Binding Lim Protein 2 (kiaa1808 Protein) From Human Cdna
Length = 73
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 153 EFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQA 202
+++ GRV++A ++HP C C C + A+ + QG ++ H QA
Sbjct: 13 KYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQA 62
>pdb|1X61|A Chain A, Solution Structure Of The First Lim Domain Of Thyroid
Receptor Interacting Protein 6 (Trip6)
Length = 72
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 28 LWHQQCFVCAQCFRPFPGGIFYEFEGRKYCE 58
++H CFVC+ C G FY E R YCE
Sbjct: 28 VFHVGCFVCSTCRAQLRGQHFYAVERRAYCE 58
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 292 VTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHY 331
V AL + +HV FVC+ C G Y + AYCE Y
Sbjct: 22 VVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCY 61
>pdb|2EHE|A Chain A, Solution Structure Of The First Lim Domain From Human Four
And A Half Lim Domains Protein 3
Length = 82
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 167 WHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVG 206
+H CFRC C + LAD F LC++C A + G
Sbjct: 39 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSG 78
>pdb|2LXD|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
Lmo2(Lim2)- Ldb1(Lid)
Length = 125
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEF-EGRKYCEHDFH 62
C+ C++ E + +++H +CF CA C + F G Y CE D +
Sbjct: 13 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIY 68
>pdb|1X63|A Chain A, Solution Structure Of The Second Lim Domain Of Skeletal
Muscle Lim Protein 1
Length = 82
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFA 66
C C + ++ V G +WH+ CF C+ C + G F+ YC FA
Sbjct: 18 CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFA 76
>pdb|2L6Y|B Chain B, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid
pdb|2L6Z|C Chain C, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
Length = 96
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEF-EGRKYCEHDFH 62
C+ C++ E + +++H +CF CA C + F G Y CE D +
Sbjct: 11 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIY 66
>pdb|1J2O|A Chain A, Structure Of Flin2, A Complex Containing The N-Terminal
Lim Domain Of Lmo2 And Ldb1-Lid
Length = 114
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 160 IKAMNANWHPKCFRCEHCSKELADLG--FIRSQGRALC 195
+KA++ WH C C+ C L ++G GR LC
Sbjct: 19 LKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLC 56
>pdb|1EE8|A Chain A, Crystal Structure Of Mutm (Fpg) Protein From Thermus
Thermophilus Hb8
pdb|1EE8|B Chain B, Crystal Structure Of Mutm (Fpg) Protein From Thermus
Thermophilus Hb8
Length = 266
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 271 CHDKMGIPICGACRRPIEERVVTALGKHW 299
+ + G+P C AC RP+E RVV G H+
Sbjct: 230 VYGREGLP-CPACGRPVERRVVAGRGTHF 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.142 0.501
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,631,357
Number of Sequences: 62578
Number of extensions: 842780
Number of successful extensions: 2387
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2025
Number of HSP's gapped (non-prelim): 346
length of query: 594
length of database: 14,973,337
effective HSP length: 104
effective length of query: 490
effective length of database: 8,465,225
effective search space: 4147960250
effective search space used: 4147960250
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.4 bits)