Query psy10533
Match_columns 594
No_of_seqs 432 out of 2981
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 20:44:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 99.9 7.5E-27 2.6E-31 226.2 13.4 168 277-461 7-186 (192)
2 1b8t_A Protein (CRP1); LIM dom 99.9 4.9E-25 1.7E-29 213.4 11.2 179 133-348 8-187 (192)
3 2xqn_T Testin, TESS; metal-bin 99.9 5.5E-25 1.9E-29 198.6 9.8 119 276-449 2-125 (126)
4 2xjy_A Rhombotin-2; oncoprotei 99.9 7.9E-25 2.7E-29 198.8 8.6 121 277-451 2-129 (131)
5 1rut_X Flinc4, fusion protein 99.9 2.2E-24 7.4E-29 208.2 7.7 131 275-459 3-140 (188)
6 2xjy_A Rhombotin-2; oncoprotei 99.9 1.9E-23 6.4E-28 189.7 10.0 126 377-556 2-130 (131)
7 2xqn_T Testin, TESS; metal-bin 99.9 1.1E-23 3.9E-28 189.9 5.7 119 208-335 2-125 (126)
8 2jtn_A LIM domain-binding prot 99.9 1E-22 3.5E-27 195.5 11.5 133 264-449 44-181 (182)
9 1rut_X Flinc4, fusion protein 99.9 6.1E-23 2.1E-27 198.1 7.7 133 376-562 4-139 (188)
10 2rgt_A Fusion of LIM/homeobox 99.9 1.9E-22 6.5E-27 191.3 9.8 130 276-460 5-140 (169)
11 2rgt_A Fusion of LIM/homeobox 99.9 9.4E-22 3.2E-26 186.5 10.4 125 1-204 2-128 (169)
12 2jtn_A LIM domain-binding prot 99.8 6.3E-22 2.2E-26 190.0 7.9 134 190-335 43-181 (182)
13 2cup_A Skeletal muscle LIM-pro 99.8 4.7E-21 1.6E-25 165.9 8.2 95 275-410 3-101 (101)
14 2cup_A Skeletal muscle LIM-pro 99.8 1.8E-20 6E-25 162.3 8.9 71 1-71 1-71 (101)
15 1m3v_A FLIN4, fusion of the LI 99.8 8.2E-19 2.8E-23 157.3 7.4 108 376-501 4-114 (122)
16 1m3v_A FLIN4, fusion of the LI 99.8 2.1E-19 7.1E-24 161.2 3.2 108 275-450 3-115 (122)
17 1x3h_A Leupaxin; paxillin fami 99.7 1.8E-17 6.2E-22 137.1 7.5 79 363-455 1-79 (80)
18 1j2o_A FLIN2, fusion of rhombo 99.7 4.9E-17 1.7E-21 144.0 8.6 103 377-501 3-106 (114)
19 2cuq_A Four and A half LIM dom 99.7 4.2E-17 1.4E-21 134.9 7.2 78 363-454 1-78 (80)
20 1x3h_A Leupaxin; paxillin fami 99.7 3.8E-17 1.3E-21 135.1 6.2 77 264-340 2-78 (80)
21 2dlo_A Thyroid receptor-intera 99.7 6.6E-17 2.3E-21 134.1 7.2 78 363-455 2-80 (81)
22 2cuq_A Four and A half LIM dom 99.7 5.4E-17 1.8E-21 134.2 6.1 77 264-340 2-78 (80)
23 2ehe_A Four and A half LIM dom 99.7 2.5E-17 8.7E-22 136.9 3.8 79 363-455 1-81 (82)
24 2ehe_A Four and A half LIM dom 99.6 5.4E-17 1.8E-21 134.9 3.7 77 264-340 2-80 (82)
25 2dlo_A Thyroid receptor-intera 99.6 1.5E-16 5.1E-21 132.0 6.0 77 263-340 2-79 (81)
26 1x63_A Skeletal muscle LIM-pro 99.6 3.7E-16 1.3E-20 129.8 8.2 77 364-454 2-80 (82)
27 1x6a_A LIMK-2, LIM domain kina 99.6 2.1E-16 7.2E-21 131.0 6.2 79 364-455 2-81 (81)
28 1j2o_A FLIN2, fusion of rhombo 99.6 1.1E-16 3.9E-21 141.6 4.6 65 277-341 3-70 (114)
29 1x63_A Skeletal muscle LIM-pro 99.6 4.5E-16 1.5E-20 129.3 6.6 76 264-339 2-79 (82)
30 1wyh_A SLIM 2, skeletal muscle 99.6 2E-15 6.8E-20 122.1 7.4 70 2-71 2-71 (72)
31 1x4k_A Skeletal muscle LIM-pro 99.6 2.1E-15 7.1E-20 122.0 7.2 69 3-71 3-71 (72)
32 2egq_A FHL1 protein; LIM domai 99.6 1.7E-15 5.8E-20 124.2 6.4 71 264-334 2-77 (77)
33 2egq_A FHL1 protein; LIM domai 99.6 2.4E-15 8.1E-20 123.3 6.9 71 364-448 2-77 (77)
34 1g47_A Pinch protein; LIM doma 99.6 1.5E-15 5.2E-20 124.5 5.3 69 2-70 8-76 (77)
35 1x4l_A Skeletal muscle LIM-pro 99.6 3.2E-15 1.1E-19 121.0 6.4 69 2-70 2-72 (72)
36 1x6a_A LIMK-2, LIM domain kina 99.6 2.1E-15 7.1E-20 125.0 5.2 76 264-339 2-79 (81)
37 2cu8_A Cysteine-rich protein 2 99.5 4.6E-15 1.6E-19 121.4 6.7 69 2-71 6-75 (76)
38 1iml_A CRIP, cysteine rich int 99.5 9.5E-15 3.2E-19 119.5 6.9 70 378-461 1-72 (76)
39 2dar_A PDZ and LIM domain prot 99.5 1.2E-14 4.1E-19 123.0 7.7 75 366-454 14-88 (90)
40 2d8z_A Four and A half LIM dom 99.5 9.5E-15 3.3E-19 117.4 6.7 68 2-71 2-69 (70)
41 2dj7_A Actin-binding LIM prote 99.5 9E-15 3.1E-19 121.0 6.3 66 4-71 14-79 (80)
42 2cur_A Skeletal muscle LIM-pro 99.5 1.2E-14 4.1E-19 116.5 6.5 66 376-455 4-69 (69)
43 2cur_A Skeletal muscle LIM-pro 99.5 1.1E-14 3.7E-19 116.8 6.0 68 2-71 2-69 (69)
44 1x68_A FHL5 protein; four-and- 99.5 7.7E-15 2.6E-19 120.1 5.1 69 375-457 3-75 (76)
45 2d8z_A Four and A half LIM dom 99.5 1.6E-14 5.5E-19 116.1 6.6 67 375-455 3-69 (70)
46 1nyp_A Pinch protein; LIM doma 99.5 2.1E-14 7E-19 114.2 5.7 64 3-68 3-66 (66)
47 1x68_A FHL5 protein; four-and- 99.5 1.5E-14 5E-19 118.4 5.0 69 275-343 3-75 (76)
48 1a7i_A QCRP2 (LIM1); LIM domai 99.5 1.2E-14 4E-19 120.5 4.2 70 3-74 5-74 (81)
49 1iml_A CRIP, cysteine rich int 99.5 2.4E-14 8.1E-19 117.1 5.8 70 278-347 1-72 (76)
50 1nyp_A Pinch protein; LIM doma 99.5 2.4E-14 8.4E-19 113.7 5.4 64 375-452 3-66 (66)
51 1wyh_A SLIM 2, skeletal muscle 99.5 4E-14 1.4E-18 114.4 6.5 67 375-455 3-71 (72)
52 3f6q_B LIM and senescent cell 99.5 3E-14 1E-18 114.8 5.4 65 2-66 8-72 (72)
53 2dar_A PDZ and LIM domain prot 99.5 5.1E-14 1.7E-18 119.1 6.9 73 268-340 16-88 (90)
54 2cu8_A Cysteine-rich protein 2 99.5 5.4E-14 1.9E-18 115.0 6.8 67 375-455 7-75 (76)
55 1a7i_A QCRP2 (LIM1); LIM domai 99.5 3.1E-14 1.1E-18 117.9 5.2 69 377-459 7-76 (81)
56 1x61_A Thyroid receptor intera 99.5 4.3E-14 1.5E-18 114.2 5.6 65 2-66 2-66 (72)
57 1x64_A Alpha-actinin-2 associa 99.5 6.9E-14 2.4E-18 118.0 6.9 65 4-70 24-88 (89)
58 2d8x_A Protein pinch; LIM doma 99.4 7.6E-14 2.6E-18 112.2 6.2 68 2-71 2-69 (70)
59 1x62_A C-terminal LIM domain p 99.4 3.2E-14 1.1E-18 117.3 4.1 65 4-70 14-78 (79)
60 1x4k_A Skeletal muscle LIM-pro 99.4 7.9E-14 2.7E-18 112.6 6.3 66 275-340 3-70 (72)
61 2d8y_A Eplin protein; LIM doma 99.4 7.8E-14 2.7E-18 118.2 6.0 68 3-71 13-80 (91)
62 2cor_A Pinch protein; LIM doma 99.4 1.2E-13 4.2E-18 113.9 6.6 67 2-71 12-78 (79)
63 2dj7_A Actin-binding LIM prote 99.4 9.4E-14 3.2E-18 114.9 5.9 64 377-455 15-79 (80)
64 1v6g_A Actin binding LIM prote 99.4 1.5E-13 5E-18 113.8 6.6 74 364-451 2-76 (81)
65 1v6g_A Actin binding LIM prote 99.4 1E-13 3.4E-18 114.8 3.8 74 264-337 2-76 (81)
66 1x4l_A Skeletal muscle LIM-pro 99.4 1.5E-13 5.2E-18 111.0 4.3 65 275-339 3-71 (72)
67 1x62_A C-terminal LIM domain p 99.4 1.8E-13 6E-18 112.8 4.2 65 377-455 15-79 (79)
68 1g47_A Pinch protein; LIM doma 99.4 2.6E-13 8.9E-18 111.0 4.6 66 275-340 9-76 (77)
69 2d8x_A Protein pinch; LIM doma 99.4 4.2E-13 1.4E-17 107.8 5.7 64 276-339 4-67 (70)
70 2co8_A NEDD9 interacting prote 99.4 2.3E-13 7.7E-18 113.1 3.9 65 3-68 13-79 (82)
71 1wig_A KIAA1808 protein; LIM d 99.4 7.3E-13 2.5E-17 107.5 6.1 65 2-68 2-67 (73)
72 2iyb_E Testin, TESS, TES; LIM 99.3 5E-13 1.7E-17 105.9 4.8 61 5-65 2-65 (65)
73 1wig_A KIAA1808 protein; LIM d 99.3 4.8E-13 1.6E-17 108.6 4.6 64 275-338 3-67 (73)
74 1x64_A Alpha-actinin-2 associa 99.3 6.4E-13 2.2E-17 112.0 5.3 65 275-339 23-87 (89)
75 2d8y_A Eplin protein; LIM doma 99.3 1.1E-12 3.7E-17 111.1 6.5 66 275-340 13-79 (91)
76 2cor_A Pinch protein; LIM doma 99.3 4.9E-13 1.7E-17 110.3 4.1 64 275-339 13-76 (79)
77 2l3k_A Rhombotin-2, linker, LI 99.3 6.1E-13 2.1E-17 119.1 4.0 66 6-71 9-75 (123)
78 3f6q_B LIM and senescent cell 99.3 2.2E-12 7.7E-17 103.7 5.2 65 272-336 6-72 (72)
79 2l4z_A DNA endonuclease RBBP8, 99.3 2E-12 6.9E-17 115.7 5.0 62 4-66 60-123 (123)
80 1x61_A Thyroid receptor intera 99.3 2.7E-12 9.4E-17 103.5 4.8 62 275-336 3-66 (72)
81 2l3k_A Rhombotin-2, linker, LI 99.3 2.7E-12 9.3E-17 114.9 5.1 76 272-347 1-81 (123)
82 2l4z_A DNA endonuclease RBBP8, 99.2 4.1E-12 1.4E-16 113.7 5.5 65 374-450 58-123 (123)
83 2iyb_E Testin, TESS, TES; LIM 99.2 4.1E-12 1.4E-16 100.6 3.4 58 277-334 2-64 (65)
84 2co8_A NEDD9 interacting prote 99.1 1.6E-11 5.4E-16 101.9 2.8 64 276-339 14-80 (82)
85 1zfo_A LAsp-1; LIM domain, zin 98.0 2E-06 7E-11 57.3 1.9 29 5-34 3-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 96.8 0.00025 8.5E-09 47.1 0.7 28 377-404 3-31 (31)
87 4ap4_A E3 ubiquitin ligase RNF 68.7 2 6.8E-05 37.1 1.9 83 379-461 9-124 (133)
88 4ap4_A E3 ubiquitin ligase RNF 68.6 1.7 5.8E-05 37.6 1.4 105 304-431 8-127 (133)
89 2jrp_A Putative cytoplasmic pr 57.0 5.1 0.00018 32.3 2.1 41 378-429 3-43 (81)
90 2jrp_A Putative cytoplasmic pr 56.9 7.7 0.00026 31.2 3.1 14 210-223 52-65 (81)
91 2ysl_A Tripartite motif-contai 50.6 8.5 0.00029 29.4 2.5 34 189-222 37-70 (73)
92 2jne_A Hypothetical protein YF 45.6 11 0.00036 31.4 2.3 44 174-225 51-97 (101)
93 1t1h_A Gspef-atpub14, armadill 45.2 16 0.00056 28.2 3.4 50 171-223 8-57 (78)
94 2ecy_A TNF receptor-associated 38.6 12 0.0004 28.1 1.5 48 172-222 16-63 (66)
95 1iym_A EL5; ring-H2 finger, ub 37.0 28 0.00094 24.7 3.3 40 4-43 4-53 (55)
96 2ct2_A Tripartite motif protei 36.1 15 0.00053 28.9 1.9 34 189-222 36-69 (88)
97 2djb_A Polycomb group ring fin 35.0 42 0.0014 25.4 4.3 45 417-461 15-61 (72)
98 1t1h_A Gspef-atpub14, armadill 34.8 45 0.0015 25.5 4.5 45 416-461 7-54 (78)
99 2ecm_A Ring finger and CHY zin 34.6 36 0.0012 24.0 3.6 43 3-45 3-55 (55)
100 2vpb_A Hpygo1, pygopus homolog 34.5 14 0.00047 28.4 1.3 30 4-33 7-39 (65)
101 2ect_A Ring finger protein 126 34.2 44 0.0015 25.6 4.3 41 5-45 15-64 (78)
102 2ysl_A Tripartite motif-contai 34.0 36 0.0012 25.6 3.7 44 417-461 20-68 (73)
103 1jjd_A Metallothionein, SMTA; 33.9 26 0.0009 26.0 2.6 29 35-63 9-38 (55)
104 1jjd_A Metallothionein, SMTA; 33.5 28 0.00094 25.9 2.7 29 419-447 9-38 (55)
105 1g25_A CDK-activating kinase a 32.2 18 0.0006 26.9 1.6 51 172-224 4-58 (65)
106 1e4u_A Transcriptional repress 31.8 35 0.0012 26.8 3.3 46 416-461 10-61 (78)
107 3vk6_A E3 ubiquitin-protein li 30.2 24 0.00083 29.5 2.1 46 174-221 4-49 (101)
108 2ecy_A TNF receptor-associated 29.9 43 0.0015 24.8 3.5 43 418-461 16-61 (66)
109 1jm7_A BRCA1, breast cancer ty 29.4 24 0.00083 29.2 2.1 35 189-223 38-72 (112)
110 1twf_J DNA-directed RNA polyme 29.2 14 0.00047 28.9 0.4 15 552-566 2-16 (70)
111 2y43_A E3 ubiquitin-protein li 29.1 26 0.00087 28.5 2.2 30 189-221 40-69 (99)
112 2djb_A Polycomb group ring fin 28.9 72 0.0025 24.0 4.7 47 303-349 15-63 (72)
113 1ef4_A Subunit N, DNA-directed 28.4 12 0.0004 27.9 -0.1 15 552-566 1-15 (55)
114 2fiy_A Protein FDHE homolog; F 28.2 38 0.0013 34.2 3.7 76 378-461 183-264 (309)
115 2gvi_A Conserved hypothetical 27.9 20 0.00068 33.9 1.4 31 417-447 172-202 (204)
116 2d8s_A Cellular modulator of i 27.4 57 0.002 25.8 3.9 42 4-45 14-70 (80)
117 1x4j_A Ring finger protein 38; 27.2 35 0.0012 26.0 2.6 41 4-44 22-71 (75)
118 2e5r_A Dystrobrevin alpha; ZZ 27.0 57 0.0019 24.7 3.6 40 24-65 4-46 (63)
119 2xeu_A Ring finger protein 4; 26.6 18 0.00061 26.5 0.7 49 172-223 4-58 (64)
120 1e4u_A Transcriptional repress 25.7 31 0.0011 27.2 2.0 33 190-224 33-65 (78)
121 2yur_A Retinoblastoma-binding 25.6 32 0.0011 26.3 2.0 46 173-220 17-63 (74)
122 3vk6_A E3 ubiquitin-protein li 25.4 39 0.0013 28.3 2.5 56 419-475 3-61 (101)
123 2kiz_A E3 ubiquitin-protein li 25.3 41 0.0014 25.1 2.6 41 4-44 13-62 (69)
124 2gvi_A Conserved hypothetical 24.7 20 0.00069 33.9 0.8 31 171-201 172-202 (204)
125 1bor_A Transcription factor PM 24.2 84 0.0029 22.5 4.1 24 264-288 25-48 (56)
126 1jm7_B BARD1, BRCA1-associated 23.6 62 0.0021 27.1 3.7 27 189-220 40-66 (117)
127 4gzn_C ZFP-57, zinc finger pro 23.0 29 0.001 25.7 1.3 12 417-428 32-43 (60)
128 4ayc_A E3 ubiquitin-protein li 22.0 47 0.0016 28.8 2.6 46 173-222 55-100 (138)
129 2egp_A Tripartite motif-contai 21.9 38 0.0013 25.9 1.8 30 172-202 13-42 (79)
130 2ect_A Ring finger protein 126 21.8 72 0.0024 24.3 3.4 30 191-223 37-66 (78)
131 3oue_A Cytochrome C family pro 21.7 21 0.00072 32.4 0.2 109 173-285 29-157 (158)
132 2d8t_A Dactylidin, ring finger 21.6 51 0.0017 24.8 2.5 45 378-428 16-60 (71)
133 3lrq_A E3 ubiquitin-protein li 21.5 33 0.0011 28.1 1.4 46 173-221 24-70 (100)
134 2kre_A Ubiquitin conjugation f 21.2 74 0.0025 26.2 3.6 48 170-221 28-75 (100)
135 1weo_A Cellulose synthase, cat 20.5 56 0.0019 26.7 2.5 22 266-287 44-68 (93)
136 2ecv_A Tripartite motif-contai 20.3 78 0.0027 24.2 3.4 43 418-461 20-70 (85)
137 3ng2_A RNF4, snurf, ring finge 20.0 24 0.00081 26.5 0.2 32 188-222 33-64 (71)
138 1rmd_A RAG1; V(D)J recombinati 20.0 45 0.0015 27.8 2.0 48 173-223 25-72 (116)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.94 E-value=7.5e-27 Score=226.22 Aligned_cols=168 Identities=20% Similarity=0.333 Sum_probs=131.8
Q ss_pred CCCCCCCCCCcc-eeEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCCccccccccCCC----C
Q psy10533 277 IPICGACRRPIE-ERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQVIGGDE----S 351 (594)
Q Consensus 277 ~~~C~~C~~~I~-~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~C~~~i~~~~----~ 351 (594)
.++|..|+++|. ++.|.++|+.||++||+|..|+++|.+..|++++|++||..||.++|+++|..|++..+... .
T Consensus 7 ~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~ 86 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGE 86 (192)
T ss_dssp CEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCC
T ss_pred CCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCc
Confidence 578999999997 57788999999999999999999999888999999999999999999999999987532110 0
Q ss_pred ccccccceeccCCCCcCcccc----cccc--cccccccCcccc-CceEEecCceeecccccccccCCccccCcccccccC
Q psy10533 352 HYITSRELTYKKGLGYCESHY----HQLF--GNLCFVCNQVIG-GDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCE 424 (594)
Q Consensus 352 ~~i~~~~~~~~~g~~~C~~~~----~~~~--~~~C~~C~~~I~-g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~ 424 (594)
++ .-.+-..+...| .... ...+ .++|.+|+++|. ++.|.|+|+.||++||+|..|+++|.
T Consensus 87 ~~-~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~---------- 153 (192)
T 1b8t_A 87 SL-GIKYEEGQSHRP--TNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLE---------- 153 (192)
T ss_dssp CC-CCCCCCCCCCCC--CCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCC----------
T ss_pred cc-ccccccccccCC--CCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCC----------
Confidence 10 000000111111 0111 1111 357999999996 67899999999999999998887775
Q ss_pred CCcCCCceeecCCEeecHhHHhhHhCCCCCcCCCCcc
Q psy10533 425 KPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQNHT 461 (594)
Q Consensus 425 ~~~~~~~~~~~dg~~yC~~~y~~~f~~~C~~C~~~i~ 461 (594)
+..|+++||++||+.||.++|+++|.+|+++|+
T Consensus 154 ----~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~g 186 (192)
T 1b8t_A 154 ----STTLADKDGEIYCKGCYAKNFGPKGFGFGQGAG 186 (192)
T ss_dssp ----SSSEEEETTEEEEHHHHHHHTCCCCCCCCCCCC
T ss_pred ----CCcccccCCEEeCHHHHHHhcCCcCCCCCCccc
Confidence 456999999999999999999999999999854
No 2
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.92 E-value=4.9e-25 Score=213.44 Aligned_cols=179 Identities=21% Similarity=0.332 Sum_probs=139.1
Q ss_pred CCCCcCCCCCCCCceeeeccceEEeeEEEcCCcccCCCccccCCCCccccccccEecCCceeeccccccccccccCcccc
Q psy10533 133 FVCAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHMC 212 (594)
Q Consensus 133 f~C~~C~~~l~~~~~~~~~~~~i~g~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~dg~~~C~~C~~~~~~~~~~~~~C 212 (594)
.+|..|+++|.. ++.|.++++.||++||+|..|+++|.+..|+.+++++||..||.+++ +++|
T Consensus 8 ~~C~~C~~~I~~------------~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f-----~~~c 70 (192)
T 1b8t_A 8 KKCGVCQKAVYF------------AEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKY-----GPKG 70 (192)
T ss_dssp EECTTTCCEECS------------SCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHH-----SCCC
T ss_pred CcCccCCCeecc------------eeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhc-----Cccc
Confidence 479999766632 45567899999999999999999999999999999999999999866 4999
Q ss_pred ccccccccCcceeecCccccccCcccCCCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCCCCCcce-eE
Q psy10533 213 HKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLRCHDKMGIPICGACRRPIEE-RV 291 (594)
Q Consensus 213 ~~C~~~I~~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~gy~~~~~g~~yC~~c~~~~~~~~C~~C~~~I~~-~~ 291 (594)
..|++.. .+.+.++.|| |.+..+..... .+ ... ....+ ... ....++|++|+++|.+ +.
T Consensus 71 ~~c~~~~---g~~~~~~~~~---~~~~~~~~~~~--------~p--~~~-~~~~~-~~~--~~~~~~C~~C~~~I~~~~~ 130 (192)
T 1b8t_A 71 KGKGMGA---GTLSTDKGES---LGIKYEEGQSH--------RP--TNP-NASRM-AQK--VGGSDGCPRCGQAVYAAEK 130 (192)
T ss_dssp CCCCCCC---CCCCCCCCCC---CCCCCCCCCCC--------CC--CCC-CCCCC-CCC--CCCCEECTTTSCEECSSSC
T ss_pred ccccccc---ccEecCCCcc---ccccccccccc--------CC--CCc-Ccccc-ccc--cCCCCcCCCCCCEecCcEE
Confidence 9998753 3345577888 44443311111 01 000 01111 111 1235789999999985 77
Q ss_pred EEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCCccccccccC
Q psy10533 292 VTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQVIGG 348 (594)
Q Consensus 292 v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~C~~~i~~ 348 (594)
|.++++.||++||+|..|+++|.+..|++++|++||..||.++|+++|..|+++++.
T Consensus 131 v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~g~ 187 (192)
T 1b8t_A 131 VIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGA 187 (192)
T ss_dssp EEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCCCC
T ss_pred EecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCcccc
Confidence 889999999999999999999998889999999999999999999999999998753
No 3
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.91 E-value=5.5e-25 Score=198.60 Aligned_cols=119 Identities=23% Similarity=0.516 Sum_probs=106.2
Q ss_pred CCCCCCCCCCCcce-eEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCCccccccccCCCCccc
Q psy10533 276 GIPICGACRRPIEE-RVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQVIGGDESHYI 354 (594)
Q Consensus 276 ~~~~C~~C~~~I~~-~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~C~~~i~~~~~~~i 354 (594)
++++|++|+++|.+ ++|.++|+.||++||+|..|+++|.+..|++++|++||..||.++|+++|
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C--------------- 66 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVC--------------- 66 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBC---------------
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccC---------------
Confidence 47899999999995 78999999999999999999999998899999999999999999999888
Q ss_pred cccceeccCCCCcCcccccccccccccccCcccc--CceEEecCceee--cccccccccCCccccCcccccccCCCcCCC
Q psy10533 355 TSRELTYKKGLGYCESHYHQLFGNLCFVCNQVIG--GDLFTALNKAWC--VHHFACSTLGKHWHVEHFVCARCEKPFLGH 430 (594)
Q Consensus 355 ~~~~~~~~~g~~~C~~~~~~~~~~~C~~C~~~I~--g~~i~a~~k~~H--~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~ 430 (594)
.+|+++|. +.+|+|+++.|| ++||+|..|+++| .+.
T Consensus 67 --------------------------~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l--------------~~~ 106 (126)
T 2xqn_T 67 --------------------------QGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL--------------IGQ 106 (126)
T ss_dssp --------------------------TTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBC--------------TTS
T ss_pred --------------------------cccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCcc--------------CCC
Confidence 55555664 457999999999 9999998887666 467
Q ss_pred ceeecCCEeecHhHHhhHh
Q psy10533 431 RHYEKKGLAYCETHYHQLF 449 (594)
Q Consensus 431 ~~~~~dg~~yC~~~y~~~f 449 (594)
.|+++||++||+.+|.++|
T Consensus 107 ~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 107 KFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp EEEEETTEEESSHHHHHSC
T ss_pred eeEeECCEEcchHHhhhhc
Confidence 8999999999999999877
No 4
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.91 E-value=7.9e-25 Score=198.84 Aligned_cols=121 Identities=27% Similarity=0.587 Sum_probs=106.6
Q ss_pred CCCCCCCCCCccee-EEEEcCccccccCcCCccccCCCC--CCcccccCCeecchhhhhhhhcC--CCccccccccCCCC
Q psy10533 277 IPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPFL--GHRHYEKKGLAYCETHYHQLFGN--LCFVCNQVIGGDES 351 (594)
Q Consensus 277 ~~~C~~C~~~I~~~-~v~a~g~~wH~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~f~~--~C~~C~~~i~~~~~ 351 (594)
.++|++|+++|.++ .|.|+|+.||++||+|..|+++|. +..|++++|++||..||.++|++ +|
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C------------ 69 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLC------------ 69 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEEC------------
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccCh------------
Confidence 46899999999996 689999999999999999999996 46899999999999999999988 66
Q ss_pred ccccccceeccCCCCcCcccccccccccccccCccccC--ceEEecCceeecccccccccCCccccCcccccccCCCcCC
Q psy10533 352 HYITSRELTYKKGLGYCESHYHQLFGNLCFVCNQVIGG--DLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLG 429 (594)
Q Consensus 352 ~~i~~~~~~~~~g~~~C~~~~~~~~~~~C~~C~~~I~g--~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~ 429 (594)
.+|+++|.+ .+|+|+++.||++||+|..|+++|. .+
T Consensus 70 -----------------------------~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~-------------~g 107 (131)
T 2xjy_A 70 -----------------------------ASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFC-------------VG 107 (131)
T ss_dssp -----------------------------TTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCC-------------TT
T ss_pred -----------------------------hhcCCccCccceeEeeCCceECccCcccCCCCCCCC-------------CC
Confidence 566666643 4789999999999999999988874 36
Q ss_pred CceeecCCEeecHhHHhhHhCC
Q psy10533 430 HRHYEKKGLAYCETHYHQLFGN 451 (594)
Q Consensus 430 ~~~~~~dg~~yC~~~y~~~f~~ 451 (594)
.+|++.||++||..||.++|++
T Consensus 108 ~~f~~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 108 DRYLLINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp CEEEEETTEEEEGGGHHHHHHH
T ss_pred CEEEEECCEEEcHHHHHHHhhc
Confidence 7799999999999999999874
No 5
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.90 E-value=2.2e-24 Score=208.23 Aligned_cols=131 Identities=25% Similarity=0.523 Sum_probs=107.3
Q ss_pred CCCCCCCCCCCCccee-EEEEcCccccccCcCCccccCCCCC--CcccccCCeecchhhhhhhhcC--CCccccccccCC
Q psy10533 275 MGIPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPFLG--HRHYEKKGLAYCETHYHQLFGN--LCFVCNQVIGGD 349 (594)
Q Consensus 275 ~~~~~C~~C~~~I~~~-~v~a~g~~wH~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~cy~~~f~~--~C~~C~~~i~~~ 349 (594)
+..++|.+|+++|.++ .|.|+++.||++||+|..|+++|.. ..|++++|++||..||.++|++ +|
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C---------- 72 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAC---------- 72 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEEC----------
T ss_pred CCCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCcc----------
Confidence 3568999999999995 5889999999999999999999984 6899999999999999999987 56
Q ss_pred CCccccccceeccCCCCcCcccccccccccccccCccccC--ceEEecCceeecccccccccCCccccCcccccccCCCc
Q psy10533 350 ESHYITSRELTYKKGLGYCESHYHQLFGNLCFVCNQVIGG--DLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPF 427 (594)
Q Consensus 350 ~~~~i~~~~~~~~~g~~~C~~~~~~~~~~~C~~C~~~I~g--~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~ 427 (594)
.+|+++|.+ .+|+|+++.||++||+|..|+++|.
T Consensus 73 -------------------------------~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~------------- 108 (188)
T 1rut_X 73 -------------------------------SACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLV------------- 108 (188)
T ss_dssp -------------------------------TTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCC-------------
T ss_pred -------------------------------ccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCC-------------
Confidence 666666643 4789999999999999999988875
Q ss_pred CCCceeecCCEeecHhHHhhHhCCCCCcCCCC
Q psy10533 428 LGHRHYEKKGLAYCETHYHQLFGNLCFVCNQN 459 (594)
Q Consensus 428 ~~~~~~~~dg~~yC~~~y~~~f~~~C~~C~~~ 459 (594)
.+..|++.||++||+.||.++|+++|.+.+..
T Consensus 109 ~g~~f~~~~g~~yC~~c~~~~~~~~~~~~g~~ 140 (188)
T 1rut_X 109 PGDRFHYINGSLFCEHDRPTALINGHLNSGGS 140 (188)
T ss_dssp TTCEEEEETTEEEEGGGCCTTTC---------
T ss_pred CCCeEEEECCeEECHHHHHHHhcccccccCCC
Confidence 35679999999999999999999999887763
No 6
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.89 E-value=1.9e-23 Score=189.74 Aligned_cols=126 Identities=25% Similarity=0.418 Sum_probs=109.2
Q ss_pred cccccccCccccCc-eEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecHhHHhhHhCC--CC
Q psy10533 377 GNLCFVCNQVIGGD-LFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGN--LC 453 (594)
Q Consensus 377 ~~~C~~C~~~I~g~-~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f~~--~C 453 (594)
.++|.+|+++|.++ +|.|+|+.||++||+|+.|+++|.. .+..|+++||+|||+.||.++|++ +|
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~------------~~~~~~~~~g~~yC~~~y~~~~~~~~~C 69 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGE------------VGRRLYYKLGRKLCRRDYLRLFGQDGLC 69 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSS------------TTCCEEEETTEEECHHHHHHHHCCCEEC
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCcccc------------CCCeEEEECCEEeecCchhhhCCCccCh
Confidence 35899999999877 6899999999999999999888752 246799999999999999999999 99
Q ss_pred CcCCCCcccccccccchhhhcCCcccccccccccCCccccccccccccCCCCccCCccccccccccccccccCCCCcccc
Q psy10533 454 FVCNQNHTISLHVSSREAVLSSDSSVFGLRHYEKKGLAYCETHYHQLFGNLCFVCNQDHTISRHVSSRESVLSSDSSVFG 533 (594)
Q Consensus 454 ~~C~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~yc~~c~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (594)
.+|+++|.. .+..+.+.|+.||++|| +|..|+++++ .|
T Consensus 70 ~~C~~~I~~------------------~e~~~~a~~~~~H~~CF------~C~~C~~~L~------------------~g 107 (131)
T 2xjy_A 70 ASCDKRIRA------------------YEMTMRVKDKVYHLECF------KCAACQKHFC------------------VG 107 (131)
T ss_dssp TTTCCEECT------------------TSEEEEETTEEEEGGGC------BCTTTCCBCC------------------TT
T ss_pred hhcCCccCc------------------cceeEeeCCceECccCc------ccCCCCCCCC------------------CC
Confidence 999999752 23556789999999999 9999999652 27
Q ss_pred cccccccCccchhhhHHHhhhcc
Q psy10533 534 LRHYEKNGLAYCETHYHQLFGNL 556 (594)
Q Consensus 534 ~~~~~~~~~~~c~~~~~~~~~~~ 556 (594)
.+|++.++++||+.||.+||+++
T Consensus 108 ~~f~~~~~~~~C~~c~~~~~~~~ 130 (131)
T 2xjy_A 108 DRYLLINSDIVCEQDIYEWTKIN 130 (131)
T ss_dssp CEEEEETTEEEEGGGHHHHHHHH
T ss_pred CEEEEECCEEEcHHHHHHHhhcc
Confidence 78999999999999999999864
No 7
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.88 E-value=1.1e-23 Score=189.95 Aligned_cols=119 Identities=24% Similarity=0.551 Sum_probs=109.4
Q ss_pred Ccccccccccccc-CcceeecCccccccCcccCCCCCCCCCCcccccCCCCcccccccccccccccCCCCCCCCCCCCCC
Q psy10533 208 GKHMCHKCHGLID-DKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLRCHDKMGIPICGACRRP 286 (594)
Q Consensus 208 ~~~~C~~C~~~I~-~~~i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~gy~~~~~g~~yC~~c~~~~~~~~C~~C~~~ 286 (594)
.+++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|... +|++||..||.++++++|++|+++
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~---------~g~~yC~~cy~~~~~~~C~~C~~~ 72 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMV---------NDKPVCKPCYVKNHAVVCQGCHNA 72 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEE---------TTEEEEHHHHHHHSCCBCTTTCSB
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeE---------CCEEechHHhCcCcCccCcccCCc
Confidence 3589999999998 457899999999999999999999998777655 499999999999999999999999
Q ss_pred cce--eEEEEcCcccc--ccCcCCccccCCCCCCcccccCCeecchhhhhhhh
Q psy10533 287 IEE--RVVTALGKHWH--VEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLF 335 (594)
Q Consensus 287 I~~--~~v~a~g~~wH--~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f 335 (594)
|.+ .+|.++++.|| ++||+|..|+++|.+..|++++|++||..+|.++|
T Consensus 73 I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 73 IDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp CCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred CCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 994 78999999999 99999999999999888999999999999998876
No 8
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.88 E-value=1e-22 Score=195.46 Aligned_cols=133 Identities=23% Similarity=0.528 Sum_probs=107.8
Q ss_pred cccccccccC---CCCCCCCCCCCCCccee-EEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCC
Q psy10533 264 NELYCLRCHD---KMGIPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLC 339 (594)
Q Consensus 264 g~~yC~~c~~---~~~~~~C~~C~~~I~~~-~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C 339 (594)
++.+|...+. ....++|.+|+++|.+. +|.++|+.||++||+|..|+++|.+.. ++++|++||..||.++|+++|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~kC 122 (182)
T 2jtn_A 44 DEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKC 122 (182)
T ss_dssp SSCSSSSSCCCCCCCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCC-EEETTEEECHHHHHHTTSCCC
T ss_pred cccccccccccCCCCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCc-eeECCEeeecCcccccccccc
Confidence 4456666554 45578999999999985 578999999999999999999998765 589999999999999999988
Q ss_pred ccccccccCCCCccccccceeccCCCCcCcccccccccccccccCccccCceEEecCceeecccccccccCCccccCccc
Q psy10533 340 FVCNQVIGGDESHYITSRELTYKKGLGYCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFV 419 (594)
Q Consensus 340 ~~C~~~i~~~~~~~i~~~~~~~~~g~~~C~~~~~~~~~~~C~~C~~~I~g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~ 419 (594)
..|+++|.+. +.++.|+++.||++||+|..|+++|.
T Consensus 123 ~~C~~~I~~~---------------------------------------~~v~~a~~~~~H~~CF~C~~C~~~L~----- 158 (182)
T 2jtn_A 123 AACQLGIPPT---------------------------------------QVVRRAQDFVYHLHCFACVVCKRQLA----- 158 (182)
T ss_dssp TTTCCCCCSS---------------------------------------CCCCEETTEECCTTTCCCTTTCCCCC-----
T ss_pred ccCCCccCCC---------------------------------------ceEEecCCCCEEeCCCcCCCCCCCCC-----
Confidence 5555544321 12568999999999999999988875
Q ss_pred ccccCCCcCCCcee-ecCCEeecHhHHhhHh
Q psy10533 420 CARCEKPFLGHRHY-EKKGLAYCETHYHQLF 449 (594)
Q Consensus 420 C~~C~~~~~~~~~~-~~dg~~yC~~~y~~~f 449 (594)
.+..|+ ++||++||+.||.++.
T Consensus 159 --------~g~~f~~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 159 --------TGDEFYLMEDSRLVCKADYETAK 181 (182)
T ss_dssp --------TTCEEEECTTSCEECHHHHHHHT
T ss_pred --------CCCceEEccCCEEECHHHHHHhh
Confidence 255665 5799999999998753
No 9
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.87 E-value=6.1e-23 Score=198.07 Aligned_cols=133 Identities=24% Similarity=0.427 Sum_probs=108.4
Q ss_pred ccccccccCccccCc-eEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecHhHHhhHhCC--C
Q psy10533 376 FGNLCFVCNQVIGGD-LFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGN--L 452 (594)
Q Consensus 376 ~~~~C~~C~~~I~g~-~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f~~--~ 452 (594)
+.++|.+|+++|.++ +|.|+|+.||++||+|+.|+++|.. .+..|+++||++||+.||.++|++ +
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~------------~g~~~~~~~g~~yC~~cy~~~~~~~~~ 71 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGD------------IGTSSYTKSGMILCRNDYIRLFGNSGA 71 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHH------------HCSEEEEETTEEECHHHHHHHHSCCEE
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCccccc------------CCceEEEeCCccccccccccccccCCc
Confidence 457999999999877 5899999999999999999888752 136799999999999999999999 7
Q ss_pred CCcCCCCcccccccccchhhhcCCcccccccccccCCccccccccccccCCCCccCCccccccccccccccccCCCCccc
Q psy10533 453 CFVCNQNHTISLHVSSREAVLSSDSSVFGLRHYEKKGLAYCETHYHQLFGNLCFVCNQDHTISRHVSSRESVLSSDSSVF 532 (594)
Q Consensus 453 C~~C~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~yc~~c~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~ 532 (594)
|.+|+++|.. .+.++.+.|+.||++|| +|..|.++++ .
T Consensus 72 C~~C~~~I~~------------------~e~~i~a~~~~~H~~CF------~C~~C~~~L~------------------~ 109 (188)
T 1rut_X 72 CSACGQSIPA------------------SELVMRAQGNVYHLKCF------TCSTCRNRLV------------------P 109 (188)
T ss_dssp CTTTCCEECT------------------TSEEEEETTEEECGGGC------BCTTTCCBCC------------------T
T ss_pred cccCCCcccc------------------CcEEEEcCCCEEeCCCC------eECCCCCCCC------------------C
Confidence 9999999752 23456788999999999 9999998653 2
Q ss_pred ccccccccCccchhhhHHHhhhcccccccc
Q psy10533 533 GLRHYEKNGLAYCETHYHQLFGNLCFVCNQ 562 (594)
Q Consensus 533 ~~~~~~~~~~~~c~~~~~~~~~~~~~~c~~ 562 (594)
|.+|+..++++||+.||.++|+.+|...+.
T Consensus 110 g~~f~~~~g~~yC~~c~~~~~~~~~~~~g~ 139 (188)
T 1rut_X 110 GDRFHYINGSLFCEHDRPTALINGHLNSGG 139 (188)
T ss_dssp TCEEEEETTEEEEGGGCCTTTC--------
T ss_pred CCeEEEECCeEECHHHHHHHhcccccccCC
Confidence 678999999999999999999999987766
No 10
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.87 E-value=1.9e-22 Score=191.28 Aligned_cols=130 Identities=23% Similarity=0.532 Sum_probs=103.0
Q ss_pred CCCCCCCCCCCccee-EEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCCccccccccCCCCccc
Q psy10533 276 GIPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQVIGGDESHYI 354 (594)
Q Consensus 276 ~~~~C~~C~~~I~~~-~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~C~~~i~~~~~~~i 354 (594)
..++|.+|+++|.++ +|.|+|+.||++||+|..|+++|.+.. ++++|++||..||.++|+++|..
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~------------- 70 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAA------------- 70 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTT-------------
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeecccccccccccccc-------------
Confidence 367899999999985 578999999999999999999998765 58999999999999999988854
Q ss_pred cccceeccCCCCcCcccccccccccccccCccccC--ceEEecCceeecccccccccCCccccCcccccccCCCcCCCce
Q psy10533 355 TSRELTYKKGLGYCESHYHQLFGNLCFVCNQVIGG--DLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRH 432 (594)
Q Consensus 355 ~~~~~~~~~g~~~C~~~~~~~~~~~C~~C~~~I~g--~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~ 432 (594)
|+++|.+ .++.|+++.||++||+|..|++.|. .++.|
T Consensus 71 ----------------------------C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~-------------~g~~f 109 (169)
T 2rgt_A 71 ----------------------------CQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLA-------------TGDEF 109 (169)
T ss_dssp ----------------------------TCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCC-------------TTCEE
T ss_pred ----------------------------cccccCCCcEEEEcCCceEeeCCCcCCCCCCCCC-------------CCCce
Confidence 5555532 2568999999999999999988875 25566
Q ss_pred e-ecCCEeecHhHHhhHhCCCCC--cCCCCc
Q psy10533 433 Y-EKKGLAYCETHYHQLFGNLCF--VCNQNH 460 (594)
Q Consensus 433 ~-~~dg~~yC~~~y~~~f~~~C~--~C~~~i 460 (594)
+ +.||++||+.||.+++...+. +...+.
T Consensus 110 ~~~~~g~~~C~~c~~~~~~~~~~~~~~~rpr 140 (169)
T 2rgt_A 110 YLMEDSRLVCKADYETAKQGGSGGSGGSGGG 140 (169)
T ss_dssp EECTTSCEEEHHHHHHHHHCC----------
T ss_pred EEccCCeEECHHHHHHHhhccCCCCCCcCCC
Confidence 5 569999999999999987653 444443
No 11
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.85 E-value=9.4e-22 Score=186.52 Aligned_cols=125 Identities=26% Similarity=0.563 Sum_probs=101.7
Q ss_pred CCCCCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhccCCcCCCCCCCcccc
Q psy10533 1 MSLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPCCGNGCPSLSTFA 80 (594)
Q Consensus 1 ~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~p~c~~~c~~~~~~~ 80 (594)
++.+.++|++|+++|+.. .+|.++|+.||++||+|+.|+++|.+..| .+||++||+.||.++|+++|..
T Consensus 2 ~~~~~~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~--------- 70 (169)
T 2rgt_A 2 STPEIPMCAGCDQHILDR-FILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAA--------- 70 (169)
T ss_dssp -----CBBSSSSSBCCSS-SCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTT---------
T ss_pred CCCCCCccccCCCccCCc-EEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccc---------
Confidence 355789999999999864 45689999999999999999999998875 8999999999999999977665
Q ss_pred cccccccCCCCCCcccccccCCCcccccccccccccCCcccccCCCccccCCCCCCcCCCCCCCCceeeeccceEEeeEE
Q psy10533 81 ISLAGEISGWYPPCLKITMSLGNMYCFPLQRRFRARGEDRQTLTGGAWHQQCFVCAQCFRPFPGGIFYEFEGEFVIGRVI 160 (594)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~i~g~~v 160 (594)
|+++|.+. ..++
T Consensus 71 ---------------------------------------------------------C~~~I~~~-----------~~v~ 82 (169)
T 2rgt_A 71 ---------------------------------------------------------CQLGIPPT-----------QVVR 82 (169)
T ss_dssp ---------------------------------------------------------TCCBCCTT-----------SEEE
T ss_pred ---------------------------------------------------------cccccCCC-----------cEEE
Confidence 66666431 1345
Q ss_pred EcCCcccCCCccccCCCCccccc-cccE-ecCCceeeccccccccc
Q psy10533 161 KAMNANWHPKCFRCEHCSKELAD-LGFI-RSQGRALCHECNAQAKA 204 (594)
Q Consensus 161 ~a~~~~~H~~CF~C~~C~~~L~~-~~f~-~~dg~~~C~~C~~~~~~ 204 (594)
.++++.||++||+|..|+++|.. ..|+ ..|+++||..||.+.++
T Consensus 83 ~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~ 128 (169)
T 2rgt_A 83 RAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQ 128 (169)
T ss_dssp EETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHH
T ss_pred EcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhh
Confidence 78999999999999999999974 4564 56899999999988764
No 12
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.85 E-value=6.3e-22 Score=189.96 Aligned_cols=134 Identities=21% Similarity=0.342 Sum_probs=113.0
Q ss_pred CCceeeccccccccccccCccccccccccccCcc-eeecCccccccCcccCCCCCCCCCCcccccCCCCccccccccccc
Q psy10533 190 QGRALCHECNAQAKAVGFGKHMCHKCHGLIDDKP-LKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYC 268 (594)
Q Consensus 190 dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~~~-i~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~gy~~~~~g~~yC 268 (594)
++..+|...+.... ....++|..|+++|.++. +.++++.||++||+|..|+++|.+..|..+ |++||
T Consensus 43 ~~~~~~~~~~~~~~--~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~----------g~~yC 110 (182)
T 2jtn_A 43 DDEGGSGGHMGSGG--TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRG----------ESVYC 110 (182)
T ss_dssp SSSCSSSSSCCCCC--CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCEEET----------TEEEC
T ss_pred ccccccccccccCC--CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCceeEC----------CEeee
Confidence 35567776654321 245689999999999874 789999999999999999999998776433 99999
Q ss_pred ccccCCCCCCCCCCCCCCcce--eEEEEcCccccccCcCCccccCCCC-CCccc-ccCCeecchhhhhhhh
Q psy10533 269 LRCHDKMGIPICGACRRPIEE--RVVTALGKHWHVEHFVCARCEKPFL-GHRHY-EKKGLAYCETHYHQLF 335 (594)
Q Consensus 269 ~~c~~~~~~~~C~~C~~~I~~--~~v~a~g~~wH~~CF~C~~C~~~L~-~~~f~-~~~g~~yC~~cy~~~f 335 (594)
..||.++++++|..|+++|.+ .++.++++.||++||+|..|+++|. +..|+ ..+|++||..||.++.
T Consensus 111 ~~~y~~~f~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 111 KDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 181 (182)
T ss_dssp HHHHHHTTSCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHHT
T ss_pred cCccccccccccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHhh
Confidence 999999999999999999987 3568999999999999999999998 45665 5789999999998764
No 13
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.83 E-value=4.7e-21 Score=165.90 Aligned_cols=95 Identities=23% Similarity=0.454 Sum_probs=85.3
Q ss_pred CCCCCCCCCCCCcc--eeEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCCccccccccCCCCc
Q psy10533 275 MGIPICGACRRPIE--ERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQVIGGDESH 352 (594)
Q Consensus 275 ~~~~~C~~C~~~I~--~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~C~~~i~~~~~~ 352 (594)
.+.++|++|+++|. ++.|.++|+.||++||+|..|+++|.+..|++++|++||..||.++|+++|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C------------- 69 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKC------------- 69 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBC-------------
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCcc-------------
Confidence 45789999999997 588999999999999999999999998889999999999999999998888
Q ss_pred cccccceeccCCCCcCcccccccccccccccCcccc--CceEEecCceeecccccccccC
Q psy10533 353 YITSRELTYKKGLGYCESHYHQLFGNLCFVCNQVIG--GDLFTALNKAWCVHHFACSTLG 410 (594)
Q Consensus 353 ~i~~~~~~~~~g~~~C~~~~~~~~~~~C~~C~~~I~--g~~i~a~~k~~H~~CF~C~~C~ 410 (594)
.+|+++|. +.+|+|+|+.||++||+|+.|+
T Consensus 70 ----------------------------~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 70 ----------------------------KGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp ----------------------------SSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred ----------------------------ccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 55666664 4589999999999999999985
No 14
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.82 E-value=1.8e-20 Score=162.31 Aligned_cols=71 Identities=25% Similarity=0.602 Sum_probs=65.3
Q ss_pred CCCCCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhccCCcCC
Q psy10533 1 MSLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPCCGN 71 (594)
Q Consensus 1 ~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~p~c~~ 71 (594)
.++..++|++|+++|++++.+|.++|+.||+.||+|..|+++|.+..|+.++|++||+.||.++|+|+|..
T Consensus 1 ~s~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~ 71 (101)
T 2cup_A 1 GSSGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKG 71 (101)
T ss_dssp CCSCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSS
T ss_pred CCCCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCcccc
Confidence 35678999999999987667889999999999999999999999999999999999999999999877765
No 15
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=8.2e-19 Score=157.31 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=90.8
Q ss_pred ccccccccCccccCc-eEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecHhHHhhHhCC--C
Q psy10533 376 FGNLCFVCNQVIGGD-LFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGN--L 452 (594)
Q Consensus 376 ~~~~C~~C~~~I~g~-~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f~~--~ 452 (594)
+.++|.+|+++|.+. +|+|+++.||++||+|+.|+++|.+ .+..|+++||+|||+.||.++|++ +
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~------------~~~~~~~~~g~~yC~~cy~~~f~~~~~ 71 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGD------------IGTSSYTKSGMILCRNDYIRLFGNSGA 71 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTT------------SEECCEEETTEEECHHHHHHHHCCCCS
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccc------------cCCeEEEECCeeecHHHHHHHcCCCCc
Confidence 457999999999876 5999999999999999999888741 135699999999999999999999 9
Q ss_pred CCcCCCCcccccccccchhhhcCCcccccccccccCCcccccccccccc
Q psy10533 453 CFVCNQNHTISLHVSSREAVLSSDSSVFGLRHYEKKGLAYCETHYHQLF 501 (594)
Q Consensus 453 C~~C~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~yc~~c~~~~~ 501 (594)
|.+|+++|+....+ + ..+.++.|++|+..+|++||..||.+++
T Consensus 72 C~~C~~~I~~~~~~-~-----~g~~~l~g~~f~~~~~~~yC~~~~~~~~ 114 (122)
T 1m3v_A 72 GGSGGHMGSGGDVM-V-----VGEPTLMGGEFGDEDERLITRLENTQFD 114 (122)
T ss_dssp SSCSSCCSCCEESS-S-----SSSSSCCSCTTCCTTCCCCEECTTTTTT
T ss_pred cccCCCCcCchheE-E-----cCCcCCCCCccEecCCEeEccCcchhch
Confidence 99999999853222 2 2345789999999999999999997643
No 16
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=2.1e-19 Score=161.22 Aligned_cols=108 Identities=20% Similarity=0.436 Sum_probs=89.5
Q ss_pred CCCCCCCCCCCCccee-EEEEcCccccccCcCCccccCCCC--CCcccccCCeecchhhhhhhhcC--CCccccccccCC
Q psy10533 275 MGIPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPFL--GHRHYEKKGLAYCETHYHQLFGN--LCFVCNQVIGGD 349 (594)
Q Consensus 275 ~~~~~C~~C~~~I~~~-~v~a~g~~wH~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~f~~--~C~~C~~~i~~~ 349 (594)
++.++|++|+++|.+. .|.|+++.||++||+|..|+++|. +..|++++|++||..||.++|++ +|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~-------- 74 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGS-------- 74 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSC--------
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCcccc--------
Confidence 4578999999999996 589999999999999999999997 35799999999999999999998 7754
Q ss_pred CCccccccceeccCCCCcCcccccccccccccccCccccCceEEecCceeecccccccccCCccccCcccccccCCCcCC
Q psy10533 350 ESHYITSRELTYKKGLGYCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLG 429 (594)
Q Consensus 350 ~~~~i~~~~~~~~~g~~~C~~~~~~~~~~~C~~C~~~I~g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~ 429 (594)
|+++|.+..|.++|+ .++.+
T Consensus 75 ---------------------------------C~~~I~~~~~~~~g~---------------------------~~l~g 94 (122)
T 1m3v_A 75 ---------------------------------GGHMGSGGDVMVVGE---------------------------PTLMG 94 (122)
T ss_dssp ---------------------------------SSCCSCCEESSSSSS---------------------------SSCCS
T ss_pred ---------------------------------CCCCcCchheEEcCC---------------------------cCCCC
Confidence 455554444444442 24678
Q ss_pred CceeecCCEeecHhHHhhHhC
Q psy10533 430 HRHYEKKGLAYCETHYHQLFG 450 (594)
Q Consensus 430 ~~~~~~dg~~yC~~~y~~~f~ 450 (594)
++|+++||+|||..||.+++.
T Consensus 95 ~~f~~~~~~~yC~~~~~~~~~ 115 (122)
T 1m3v_A 95 GEFGDEDERLITRLENTQFDA 115 (122)
T ss_dssp CTTCCTTCCCCEECTTTTTTC
T ss_pred CccEecCCEeEccCcchhchh
Confidence 899999999999999998764
No 17
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.8e-17 Score=137.09 Aligned_cols=79 Identities=22% Similarity=0.451 Sum_probs=72.9
Q ss_pred CCCCcCcccccccccccccccCccccCceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecH
Q psy10533 363 KGLGYCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCE 442 (594)
Q Consensus 363 ~g~~~C~~~~~~~~~~~C~~C~~~I~g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~ 442 (594)
++++||+.||.++++++|.+|+++|.++.|+|+++.||++||+|+.|+++|. +..|+++||+|||+
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~--------------~~~~~~~~~~~yC~ 66 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFS--------------TGSFFELDGRPFCE 66 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCEEETTEEECTTTCBCSSSCCBSC--------------SSCCEESSSCEECH
T ss_pred CCCccchhHHhhhcCCccccCCCeecceeEEECCCeEecCcCChhhCCCCCC--------------CCcEEeECCEEECH
Confidence 3689999999999999999999999999999999999999999998887775 45689999999999
Q ss_pred hHHhhHhCCCCCc
Q psy10533 443 THYHQLFGNLCFV 455 (594)
Q Consensus 443 ~~y~~~f~~~C~~ 455 (594)
.||.++|+++|.+
T Consensus 67 ~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 67 LHYHHRRGSGPSS 79 (80)
T ss_dssp HHHHHHHSSSCCC
T ss_pred HHHHHHcCCCCCC
Confidence 9999999999974
No 18
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=4.9e-17 Score=143.98 Aligned_cols=103 Identities=19% Similarity=0.315 Sum_probs=84.8
Q ss_pred cccccccCccccCc-eEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecHhHHhhHhCCCCCc
Q psy10533 377 GNLCFVCNQVIGGD-LFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFV 455 (594)
Q Consensus 377 ~~~C~~C~~~I~g~-~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f~~~C~~ 455 (594)
.++|.+|+++|.+. +|.|+++.||++||+|+.|+++|.. .+..|+++||+|||+.||.++|+++|..
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~------------~g~~~~~~~g~~yC~~~y~~~f~~~c~~ 70 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGE------------VGRRLYYKLGRKLCRRDYLRLGGSGGHM 70 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCC------------SSSCCCCBTTBCCCHHHHHHHHTSCCSS
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhc------------CCCeeEEECCeeechHHHHHHhCcccCc
Confidence 36899999999877 7999999999999999999888752 1357999999999999999999999998
Q ss_pred CCCCcccccccccchhhhcCCcccccccccccCCcccccccccccc
Q psy10533 456 CNQNHTISLHVSSREAVLSSDSSVFGLRHYEKKGLAYCETHYHQLF 501 (594)
Q Consensus 456 C~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~yc~~c~~~~~ 501 (594)
|... . .+ .....++.|++|++.+|++||..|+.++.
T Consensus 71 c~~~---~-~~------~~~~~~~~g~~f~~~~~~~~C~~~~~~~~ 106 (114)
T 1j2o_A 71 GSGG---D-VM------VVGEPTLMGGEFGDEDERLITRLENTQFD 106 (114)
T ss_dssp CBSC---S-CC------CSSCSSTTSSBCCCSSSCCCEEEECTTCC
T ss_pred CCCC---c-ee------EcCCccCCCCeeEEcCCEeecchhhhccc
Confidence 8742 1 11 12345678999999999999999997633
No 19
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=4.2e-17 Score=134.89 Aligned_cols=78 Identities=17% Similarity=0.346 Sum_probs=72.4
Q ss_pred CCCCcCcccccccccccccccCccccCceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecH
Q psy10533 363 KGLGYCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCE 442 (594)
Q Consensus 363 ~g~~~C~~~~~~~~~~~C~~C~~~I~g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~ 442 (594)
+|++||+.||.++++++|.+|+++|.++.|.|+++.||++||+|+.|+++|. +..|+++||+|||+
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~--------------~~~~~~~~~~~yC~ 66 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLA--------------GQQFTSRDEDPYCV 66 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCBCT--------------TCCEEECSSSEEEH
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCcEEEECCchhhhhhCCcccCCCcCC--------------CCeeEeECCEEECH
Confidence 4789999999999999999999999999999999999999999988887764 56799999999999
Q ss_pred hHHhhHhCCCCC
Q psy10533 443 THYHQLFGNLCF 454 (594)
Q Consensus 443 ~~y~~~f~~~C~ 454 (594)
.||.++|+++|.
T Consensus 67 ~cy~~~f~~~c~ 78 (80)
T 2cuq_A 67 ACFGELFASGPS 78 (80)
T ss_dssp HHHHHHTTCSTT
T ss_pred HHHHHHcCCCCC
Confidence 999999999996
No 20
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=3.8e-17 Score=135.11 Aligned_cols=77 Identities=32% Similarity=0.595 Sum_probs=74.4
Q ss_pred cccccccccCCCCCCCCCCCCCCcceeEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCCc
Q psy10533 264 NELYCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCF 340 (594)
Q Consensus 264 g~~yC~~c~~~~~~~~C~~C~~~I~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~ 340 (594)
|++||.+||.++++++|++|+++|.+++|.++++.||++||+|..|+++|.++.|+++++++||..||.++|+++|.
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~ 78 (80)
T 1x3h_A 2 SSGSSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPS 78 (80)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCCSSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCC
T ss_pred CCccchhHHhhhcCCccccCCCeecceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCC
Confidence 78999999999999999999999999999999999999999999999999988899999999999999999999994
No 21
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=6.6e-17 Score=134.11 Aligned_cols=78 Identities=19% Similarity=0.245 Sum_probs=70.5
Q ss_pred CCCCcCcccccccccccccccCccccCceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeec-CCEeec
Q psy10533 363 KGLGYCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEK-KGLAYC 441 (594)
Q Consensus 363 ~g~~~C~~~~~~~~~~~C~~C~~~I~g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~-dg~~yC 441 (594)
+|++||+.||. .+.++|.+|+++|.+++|+|+++.||++||+|+.|+++|. +..|+.. ||+|||
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~--------------~~~f~~~~~g~~yC 66 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLD--------------GIPFTVDATSQIHC 66 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCBCT--------------TSCEECCTTCCCEE
T ss_pred cCCEECHHHhh-cCCCccccCCCeecceeEEECCccccHHhcCcccCCCccC--------------CCeeEECCCCEEEC
Confidence 57899999999 7999999999999999999999999999999998887764 5567765 799999
Q ss_pred HhHHhhHhCCCCCc
Q psy10533 442 ETHYHQLFGNLCFV 455 (594)
Q Consensus 442 ~~~y~~~f~~~C~~ 455 (594)
+.||.++|+++|.+
T Consensus 67 ~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 67 IEDFHRKFASGPSS 80 (81)
T ss_dssp HHHHHHHTTSSSCC
T ss_pred HHHHHHHhcCcCCC
Confidence 99999999999974
No 22
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=5.4e-17 Score=134.24 Aligned_cols=77 Identities=23% Similarity=0.507 Sum_probs=74.4
Q ss_pred cccccccccCCCCCCCCCCCCCCcceeEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCCc
Q psy10533 264 NELYCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCF 340 (594)
Q Consensus 264 g~~yC~~c~~~~~~~~C~~C~~~I~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~ 340 (594)
|++||.+||.++++++|++|+++|.++.|.++++.||++||+|..|+++|.+..|+++++++||..||.++|+++|+
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 78 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPS 78 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTT
T ss_pred CcEEcHHHHccccCCcCCCCCCEecCcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCC
Confidence 78999999999999999999999999889999999999999999999999988999999999999999999999994
No 23
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.5e-17 Score=136.90 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=72.3
Q ss_pred CCCCcCcccccccccccccccCcccc--CceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEee
Q psy10533 363 KGLGYCESHYHQLFGNLCFVCNQVIG--GDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAY 440 (594)
Q Consensus 363 ~g~~~C~~~~~~~~~~~C~~C~~~I~--g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~y 440 (594)
+|++||+.||.+.++++|.+|+++|. +.+|.|+++.||++||+|+.|+++|. +..|+++||+||
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~--------------~~~f~~~~~~~~ 66 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLA--------------DEPFTCQDSELL 66 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCS--------------SCCEEEETTEEE
T ss_pred CCceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccC--------------CCccEeeCCEEE
Confidence 57899999999999999999999997 77889999999999999988887764 567999999999
Q ss_pred cHhHHhhHhCCCCCc
Q psy10533 441 CETHYHQLFGNLCFV 455 (594)
Q Consensus 441 C~~~y~~~f~~~C~~ 455 (594)
|+.||.++|+++|.+
T Consensus 67 C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 67 CNDCYCSAFSSGPSS 81 (82)
T ss_dssp ETTTSSCCGGGSSCC
T ss_pred CHHHHhhhcCCCCCC
Confidence 999999999999974
No 24
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.4e-17 Score=134.93 Aligned_cols=77 Identities=19% Similarity=0.357 Sum_probs=73.6
Q ss_pred cccccccccCCCCCCCCCCCCCCcc--eeEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCCc
Q psy10533 264 NELYCLRCHDKMGIPICGACRRPIE--ERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCF 340 (594)
Q Consensus 264 g~~yC~~c~~~~~~~~C~~C~~~I~--~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~ 340 (594)
|++||.+||.++++++|++|+++|. +.+|.++++.||++||+|+.|+++|.+..|+++++++||..||.++|+++|+
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~ 80 (82)
T 2ehe_A 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPS 80 (82)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSC
T ss_pred CceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCC
Confidence 7899999999999999999999999 5778899999999999999999999988999999999999999999999994
No 25
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.5e-16 Score=131.98 Aligned_cols=77 Identities=22% Similarity=0.441 Sum_probs=72.0
Q ss_pred ccccccccccCCCCCCCCCCCCCCcceeEEEEcCccccccCcCCccccCCCCCCccccc-CCeecchhhhhhhhcCCCc
Q psy10533 263 MNELYCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEK-KGLAYCETHYHQLFGNLCF 340 (594)
Q Consensus 263 ~g~~yC~~c~~~~~~~~C~~C~~~I~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~-~g~~yC~~cy~~~f~~~C~ 340 (594)
+|++||.+||. ++.++|++|+++|.+++|.|+++.||++||+|+.|+++|.+..|+.. +|++||..||.++|+++|+
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~ 79 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPS 79 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSC
T ss_pred cCCEECHHHhh-cCCCccccCCCeecceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCC
Confidence 38999999999 78999999999999999999999999999999999999998778765 7999999999999999994
No 26
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=3.7e-16 Score=129.78 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=70.5
Q ss_pred CCCcCcccccccccccccccCcccc--CceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeec
Q psy10533 364 GLGYCESHYHQLFGNLCFVCNQVIG--GDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYC 441 (594)
Q Consensus 364 g~~~C~~~~~~~~~~~C~~C~~~I~--g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC 441 (594)
+.+||+.||.+.++++|.+|+++|. +.+|.|+++.||++||+|..|+++|. +..|+++||++||
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~--------------~~~~~~~~~~~yC 67 (82)
T 1x63_A 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIG--------------TGSFFPKGEDFYC 67 (82)
T ss_dssp CSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCT--------------TSCEEEETTEEEE
T ss_pred CCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccC--------------CCccEeeCCEEEC
Confidence 5799999999999999999999997 67899999999999999998887765 5579999999999
Q ss_pred HhHHhhHhCCCCC
Q psy10533 442 ETHYHQLFGNLCF 454 (594)
Q Consensus 442 ~~~y~~~f~~~C~ 454 (594)
+.||.++|++++.
T Consensus 68 ~~cy~~~f~~~~~ 80 (82)
T 1x63_A 68 VTCHETKFASGPS 80 (82)
T ss_dssp HHHHHHHTSCCCS
T ss_pred HHHHHHHhCCCCC
Confidence 9999999999875
No 27
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=2.1e-16 Score=131.01 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=71.7
Q ss_pred CCCcCcccccccccccccccCccccCceEEecCceeecccccccccCCccccCcccccccCCCcCCCcee-ecCCEeecH
Q psy10533 364 GLGYCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHY-EKKGLAYCE 442 (594)
Q Consensus 364 g~~~C~~~~~~~~~~~C~~C~~~I~g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~-~~dg~~yC~ 442 (594)
+.+||+.||.++|+++|.+|+++|.++.|.|+++.||++||+|..|+++|. .+..|+ ++||+|||+
T Consensus 2 ~~~yC~~~y~~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~-------------~g~~f~~~~~~~~~C~ 68 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIE-------------DGDAYALVQHATLYCG 68 (81)
T ss_dssp CCCCCCCCSSCCSSCBCTTTCCBCCSCCBCCTTCCBCTTSCBCTTTCCBCC-------------TTSCEEECSSSCEEEH
T ss_pred CCccchhHHhhhcCCcCccCCCCcCceEEEECCceeccccCCccCCCCccC-------------CCCcEEEeeCCEEECH
Confidence 579999999999999999999999999999999999999999999988875 245677 589999999
Q ss_pred hHHhhHhCCCCCc
Q psy10533 443 THYHQLFGNLCFV 455 (594)
Q Consensus 443 ~~y~~~f~~~C~~ 455 (594)
.||.++|++.|.+
T Consensus 69 ~c~~~~~~~~~sg 81 (81)
T 1x6a_A 69 KCHNEVVSGPSSG 81 (81)
T ss_dssp HHHHHHHCTTSCC
T ss_pred HHHHHHhcCCCCC
Confidence 9999999998864
No 28
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.1e-16 Score=141.57 Aligned_cols=65 Identities=28% Similarity=0.602 Sum_probs=59.9
Q ss_pred CCCCCCCCCCccee-EEEEcCccccccCcCCccccCCCCC--CcccccCCeecchhhhhhhhcCCCcc
Q psy10533 277 IPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPFLG--HRHYEKKGLAYCETHYHQLFGNLCFV 341 (594)
Q Consensus 277 ~~~C~~C~~~I~~~-~v~a~g~~wH~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~cy~~~f~~~C~~ 341 (594)
.++|++|+++|.+. .|.|+++.||++||+|+.|+++|.. ..|++++|++||..||.++|+++|..
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~ 70 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHM 70 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSS
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCc
Confidence 57899999999996 7999999999999999999999974 58999999999999999999999843
No 29
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=4.5e-16 Score=129.28 Aligned_cols=76 Identities=22% Similarity=0.440 Sum_probs=72.9
Q ss_pred cccccccccCCCCCCCCCCCCCCcc--eeEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCC
Q psy10533 264 NELYCLRCHDKMGIPICGACRRPIE--ERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLC 339 (594)
Q Consensus 264 g~~yC~~c~~~~~~~~C~~C~~~I~--~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C 339 (594)
+.+||.+||.++++++|++|+++|. +++|.++++.||++||+|..|+++|.++.|+++++++||..||.++|++++
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~ 79 (82)
T 1x63_A 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGP 79 (82)
T ss_dssp CSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCC
T ss_pred CCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCC
Confidence 6899999999999999999999999 578999999999999999999999998899999999999999999999997
No 30
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=2e-15 Score=122.09 Aligned_cols=70 Identities=30% Similarity=0.678 Sum_probs=65.7
Q ss_pred CCCCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhccCCcCC
Q psy10533 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPCCGN 71 (594)
Q Consensus 2 ~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~p~c~~ 71 (594)
.+..++|++|+++|++.+.+|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+|+|+.
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred CccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 3567899999999998778889999999999999999999999999999999999999999999999975
No 31
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=2.1e-15 Score=121.97 Aligned_cols=69 Identities=22% Similarity=0.606 Sum_probs=65.5
Q ss_pred CCCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhccCCcCC
Q psy10533 3 LGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPCCGN 71 (594)
Q Consensus 3 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~p~c~~ 71 (594)
+-.++|++|+++|++.|.+|.++|+.||+.||+|..|+++|.+..|+.+++++||+.||.++|+|+|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp SCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred ccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 457899999999998888889999999999999999999999999999999999999999999999975
No 32
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=124.23 Aligned_cols=71 Identities=24% Similarity=0.504 Sum_probs=67.6
Q ss_pred cccccccccCCCCCCCCCCCCCCcce-----eEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhh
Q psy10533 264 NELYCLRCHDKMGIPICGACRRPIEE-----RVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQL 334 (594)
Q Consensus 264 g~~yC~~c~~~~~~~~C~~C~~~I~~-----~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 334 (594)
+++||.+||.++++++|++|+++|.+ +.|.++++.||++||+|..|+++|.+..|++++|++||..||.++
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp CSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred CCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 78999999999999999999999996 889999999999999999999999988899999999999999764
No 33
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.4e-15 Score=123.33 Aligned_cols=71 Identities=18% Similarity=0.389 Sum_probs=64.9
Q ss_pred CCCcCcccccccccccccccCccccC-----ceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCE
Q psy10533 364 GLGYCESHYHQLFGNLCFVCNQVIGG-----DLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGL 438 (594)
Q Consensus 364 g~~~C~~~~~~~~~~~C~~C~~~I~g-----~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~ 438 (594)
+++||..||.++++++|.+|+++|.+ +.|.|+++.||++||+|+.|+++|. +..|+++||+
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~--------------~~~f~~~~~~ 67 (77)
T 2egq_A 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLA--------------NKRFVFHQEQ 67 (77)
T ss_dssp CSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCT--------------TSCCCEETTE
T ss_pred CCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCC--------------CCccEeECCE
Confidence 67999999999999999999999986 8899999999999999988887764 5678999999
Q ss_pred eecHhHHhhH
Q psy10533 439 AYCETHYHQL 448 (594)
Q Consensus 439 ~yC~~~y~~~ 448 (594)
|||+.||.++
T Consensus 68 ~yC~~cy~~l 77 (77)
T 2egq_A 68 VYCPDCAKKL 77 (77)
T ss_dssp ECCHHHHHHC
T ss_pred EEChHHhccC
Confidence 9999999874
No 34
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.5e-15 Score=124.46 Aligned_cols=69 Identities=71% Similarity=1.452 Sum_probs=63.9
Q ss_pred CCCCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhccCCcC
Q psy10533 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPCCG 70 (594)
Q Consensus 2 ~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~p~c~ 70 (594)
.+..++|++|+++|++.|.++.++|+.||+.||+|..|+++|.+..|+.++|++||+.||.++|+|+|.
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 356899999999999889999999999999999999999999998999999999999999999999985
No 35
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=3.2e-15 Score=120.96 Aligned_cols=69 Identities=23% Similarity=0.494 Sum_probs=64.3
Q ss_pred CCCCCcccCCCccccc--CceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhccCCcC
Q psy10533 2 SLGNMYCSRCNEGFEP--EEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPCCG 70 (594)
Q Consensus 2 ~~~~~~C~~C~~~i~~--~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~p~c~ 70 (594)
+...++|++|+++|++ ++.+|.++|+.||++||+|..|+++|.+..|+.++++|||+.||.++|+|+++
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~g 72 (72)
T 1x4l_A 2 SSGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSSG 72 (72)
T ss_dssp CSCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSCC
T ss_pred CCCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCCC
Confidence 5678999999999997 67888999999999999999999999999999999999999999999999864
No 36
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=2.1e-15 Score=124.99 Aligned_cols=76 Identities=14% Similarity=0.172 Sum_probs=70.9
Q ss_pred cccccccccCCCCCCCCCCCCCCcceeEEEEcCccccccCcCCccccCCCC-CCccc-ccCCeecchhhhhhhhcCCC
Q psy10533 264 NELYCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFL-GHRHY-EKKGLAYCETHYHQLFGNLC 339 (594)
Q Consensus 264 g~~yC~~c~~~~~~~~C~~C~~~I~~~~v~a~g~~wH~~CF~C~~C~~~L~-~~~f~-~~~g~~yC~~cy~~~f~~~C 339 (594)
+.+||.+||.++++++|++|+++|.+++|.++++.||++||+|..|+++|. +..|. ++++++||..||.++|++.+
T Consensus 2 ~~~yC~~~y~~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~ 79 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPS 79 (81)
T ss_dssp CCCCCCCCSSCCSSCBCTTTCCBCCSCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTS
T ss_pred CCccchhHHhhhcCCcCccCCCCcCceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCC
Confidence 679999999999999999999999998899999999999999999999997 45666 69999999999999999887
No 37
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=4.6e-15 Score=121.37 Aligned_cols=69 Identities=26% Similarity=0.590 Sum_probs=63.9
Q ss_pred CCCCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCCh-hHHHhhccCCcCC
Q psy10533 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCE-HDFHVLFAPCCGN 71 (594)
Q Consensus 2 ~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~-~~y~~~~~p~c~~ 71 (594)
++..++|++|+++|++.+.+ .++++.||+.||+|..|+++|.+..|+.++++|||+ .||.++|+|+|.+
T Consensus 6 ~~~~~~C~~C~~~I~~~~~v-~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAEKV-SSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCCBCTTTCCBCCTTTEE-EETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCCCCcCCCCEeECCeEE-EECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 45678999999999977765 899999999999999999999999999999999999 7999999999975
No 38
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=9.5e-15 Score=119.52 Aligned_cols=70 Identities=26% Similarity=0.518 Sum_probs=62.9
Q ss_pred ccccccCcccc-CceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecH-hHHhhHhCCCCCc
Q psy10533 378 NLCFVCNQVIG-GDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCE-THYHQLFGNLCFV 455 (594)
Q Consensus 378 ~~C~~C~~~I~-g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~-~~y~~~f~~~C~~ 455 (594)
++|.+|+++|. ++.|.|+|+.||++||+|..|+++|. +..|+++||++||+ .||.++|+++|.+
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~--------------~~~~~~~~g~~yC~~~cy~~~f~~~C~~ 66 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLT--------------SGGHAEHEGKPYCNHPCYSAMFGPKGFG 66 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCC--------------TTTEEEETTEEEETTTHHHHHSSCCCSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCC--------------CCceECcCCeEeeCHHHHHHHhCccCCC
Confidence 47999999996 88999999999999999998887775 55799999999999 6999999999999
Q ss_pred CCCCcc
Q psy10533 456 CNQNHT 461 (594)
Q Consensus 456 C~~~i~ 461 (594)
|+..+.
T Consensus 67 C~~~~~ 72 (76)
T 1iml_A 67 RGGAES 72 (76)
T ss_dssp CCCSSS
T ss_pred cCCcee
Confidence 998643
No 39
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=1.2e-14 Score=122.95 Aligned_cols=75 Identities=29% Similarity=0.459 Sum_probs=65.6
Q ss_pred CcCcccccccccccccccCccccCceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecHhHH
Q psy10533 366 GYCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHY 445 (594)
Q Consensus 366 ~~C~~~~~~~~~~~C~~C~~~I~g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~~~y 445 (594)
+..+..+...+.++|.+|+++|.+++|.|+|+.||++||+|..|+++|. +..|+++||++||+.||
T Consensus 14 ~~~~~~~~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~--------------~~~f~~~~g~~yC~~cy 79 (90)
T 2dar_A 14 QRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMA--------------YIGFVEEKGALYCELCY 79 (90)
T ss_dssp BCCEEECTTTCCCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBCS--------------SSCBEESSSCEECHHHH
T ss_pred hhcccCCCCCCCCCCccCCCEecceEEEECCccccccCCccCCCCCCCC--------------CCEeEeECCEEECHHHH
Confidence 3444455667788999999999999999999999999999998887775 56689999999999999
Q ss_pred hhHhCCCCC
Q psy10533 446 HQLFGNLCF 454 (594)
Q Consensus 446 ~~~f~~~C~ 454 (594)
.++|+++|.
T Consensus 80 ~~~f~~~c~ 88 (90)
T 2dar_A 80 EKFFASGPS 88 (90)
T ss_dssp HHHTSCCCC
T ss_pred HHHcCCCCC
Confidence 999999996
No 40
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=9.5e-15 Score=117.45 Aligned_cols=68 Identities=28% Similarity=0.602 Sum_probs=62.7
Q ss_pred CCCCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhccCCcCC
Q psy10533 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPCCGN 71 (594)
Q Consensus 2 ~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~p~c~~ 71 (594)
++..++|++|+++|.+ + .|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|+.
T Consensus 2 ~~~~~~C~~C~~~I~~-~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 2 SSGSSGCVQCKKPITT-G-GVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCCCBCSSSCCBCCS-S-EEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCCCcccCCeecc-c-eEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 4567899999999975 3 468999999999999999999999999999999999999999999999975
No 41
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=9e-15 Score=121.04 Aligned_cols=66 Identities=27% Similarity=0.675 Sum_probs=60.9
Q ss_pred CCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhccCCcCC
Q psy10533 4 GNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPCCGN 71 (594)
Q Consensus 4 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~p~c~~ 71 (594)
+.++|++|+++|+..+. |.++++.||++||+|..|+++|.+ .|+.+|++|||+.||.++|+++|++
T Consensus 14 ~~~~C~~C~~~I~~~~~-v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQS-LLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp SCSCCTTTCCCCSSSCC-EEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCcCcCCeeCCCeE-EEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 57789999999987765 489999999999999999999986 7999999999999999999999975
No 42
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=1.2e-14 Score=116.54 Aligned_cols=66 Identities=23% Similarity=0.409 Sum_probs=60.2
Q ss_pred ccccccccCccccCceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecHhHHhhHhCCCCCc
Q psy10533 376 FGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFV 455 (594)
Q Consensus 376 ~~~~C~~C~~~I~g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f~~~C~~ 455 (594)
++++|.+|+++|.++.|.|+++.||++||+|..|+++|. +..|+++||++||+.||.++|+++|.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~--------------~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 4 GSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLA--------------GQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCSSSCCCCCTTCEEETTEEECTTTTBCTTTCCBCT--------------TSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CcCCCcccCCEeCcceEEECccccccCcCEECCCCCCCC--------------CCccEeECCEEECHHHhHHHhcCCCCC
Confidence 457999999999999999999999999999988887764 567999999999999999999999975
No 43
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=1.1e-14 Score=116.84 Aligned_cols=68 Identities=25% Similarity=0.622 Sum_probs=62.8
Q ss_pred CCCCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhccCCcCC
Q psy10533 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPCCGN 71 (594)
Q Consensus 2 ~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~p~c~~ 71 (594)
++..++|++|+++|++ + .|.++++.||+.||+|..|+++|.+..|+.++++|||+.||.++|+|+|++
T Consensus 2 s~~~~~C~~C~~~I~~-~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 2 SSGSSGCVKCNKAITS-G-GITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCCCSSSCCCCCT-T-CEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CCCcCCCcccCCEeCc-c-eEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 5678999999999975 3 568999999999999999999999999999999999999999999999863
No 44
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=7.7e-15 Score=120.10 Aligned_cols=69 Identities=13% Similarity=0.298 Sum_probs=62.5
Q ss_pred cccccccccCccccC----ceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecHhHHhhHhC
Q psy10533 375 LFGNLCFVCNQVIGG----DLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 450 (594)
Q Consensus 375 ~~~~~C~~C~~~I~g----~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f~ 450 (594)
+++++|.+|+++|.+ ++|.|+++.||++||+|+.|+++|. +..|+++||+|||+.||.++|+
T Consensus 3 ~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~--------------~~~f~~~~g~~yC~~cy~~~f~ 68 (76)
T 1x68_A 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLV--------------GKGFLTQNKEIFCQKCGSGMDT 68 (76)
T ss_dssp TCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCS--------------SSCEEEETTEEEETTTTCCCCC
T ss_pred ccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCC--------------CCceEeECCEEECHHHhhhhhC
Confidence 467899999999987 8999999999999999998887764 6779999999999999999999
Q ss_pred CCCCcCC
Q psy10533 451 NLCFVCN 457 (594)
Q Consensus 451 ~~C~~C~ 457 (594)
++|..+.
T Consensus 69 ~~C~~~s 75 (76)
T 1x68_A 69 DISGPSS 75 (76)
T ss_dssp CSSSSSC
T ss_pred CcCCCCC
Confidence 9998874
No 45
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.6e-14 Score=116.08 Aligned_cols=67 Identities=21% Similarity=0.399 Sum_probs=60.3
Q ss_pred cccccccccCccccCceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecHhHHhhHhCCCCC
Q psy10533 375 LFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCF 454 (594)
Q Consensus 375 ~~~~~C~~C~~~I~g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f~~~C~ 454 (594)
.++++|.+|+++|.++.|.|+++.||++||+|..|+++|. +..|+++||++||+.||.++|+++|.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~--------------~~~~~~~~~~~yC~~cy~~~f~~~c~ 68 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLS--------------GQRFTARDDFAYCLNCFCDLYASGPS 68 (70)
T ss_dssp CCCCBCSSSCCBCCSSEEESSSSEEETTTSBCSSSCCBCT--------------TSCCEESSSSEECHHHHHHHTCCCCT
T ss_pred CCCCCCcccCCeeccceEEECccccCCCCCccCCCCCcCC--------------cCceEeeCCeEECHHHHHHHhccccC
Confidence 3567999999999999999999999999999988887764 56789999999999999999999996
Q ss_pred c
Q psy10533 455 V 455 (594)
Q Consensus 455 ~ 455 (594)
+
T Consensus 69 ~ 69 (70)
T 2d8z_A 69 S 69 (70)
T ss_dssp T
T ss_pred C
Confidence 4
No 46
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.49 E-value=2.1e-14 Score=114.15 Aligned_cols=64 Identities=39% Similarity=0.885 Sum_probs=59.5
Q ss_pred CCCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhccCC
Q psy10533 3 LGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPC 68 (594)
Q Consensus 3 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~p~ 68 (594)
+..++|++|+++|+ + .+|.++|+.||++||+|+.|+++|.+..|+.++|++||+.||.++|+|+
T Consensus 3 ~~~~~C~~C~~~I~-~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 3 MGVPICGACRRPIE-G-RVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCCEETTTTEECC-S-CEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred cCCCCCcccCCEec-c-eEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 46789999999998 4 4679999999999999999999999999999999999999999999985
No 47
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.5e-14 Score=118.40 Aligned_cols=69 Identities=20% Similarity=0.507 Sum_probs=64.5
Q ss_pred CCCCCCCCCCCCcce----eEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCCcccc
Q psy10533 275 MGIPICGACRRPIEE----RVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCN 343 (594)
Q Consensus 275 ~~~~~C~~C~~~I~~----~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~C~ 343 (594)
+++++|++|+++|.+ ++|.++++.||++||+|..|+++|.+..|+++++++||..||.++|+++|+.++
T Consensus 3 ~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp TCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred ccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 568899999999997 899999999999999999999999988899999999999999999999996553
No 48
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.49 E-value=1.2e-14 Score=120.47 Aligned_cols=70 Identities=20% Similarity=0.469 Sum_probs=57.4
Q ss_pred CCCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhccCCcCCCCC
Q psy10533 3 LGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPCCGNGCP 74 (594)
Q Consensus 3 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~p~c~~~c~ 74 (594)
.+.++|++|+++|++.+. |.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|.+ |+
T Consensus 5 ~~~~~C~~C~~~I~~~~~-~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~g-cg 74 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEE-VQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYG-YG 74 (81)
T ss_dssp ---CBCSSSCCBCSSTTE-EEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC--------
T ss_pred CCCCcCcCcCccccCcee-EEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccc-cC
Confidence 467899999999987775 59999999999999999999999999999999999999999999999985 54
No 49
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=2.4e-14 Score=117.12 Aligned_cols=70 Identities=31% Similarity=0.679 Sum_probs=65.3
Q ss_pred CCCCCCCCCcc-eeEEEEcCccccccCcCCccccCCCCCCcccccCCeecch-hhhhhhhcCCCcccccccc
Q psy10533 278 PICGACRRPIE-ERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCE-THYHQLFGNLCFVCNQVIG 347 (594)
Q Consensus 278 ~~C~~C~~~I~-~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~-~cy~~~f~~~C~~C~~~i~ 347 (594)
|+|++|+++|. ++.|.++|+.||++||+|..|+++|.++.|++++|++||. .||.++|+++|..|++++.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 67999999998 6889999999999999999999999988999999999999 6999999999999997653
No 50
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.48 E-value=2.4e-14 Score=113.71 Aligned_cols=64 Identities=50% Similarity=1.025 Sum_probs=57.9
Q ss_pred cccccccccCccccCceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecHhHHhhHhCCC
Q psy10533 375 LFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNL 452 (594)
Q Consensus 375 ~~~~~C~~C~~~I~g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f~~~ 452 (594)
+++++|.+|+++|.+++|.|+|+.||++||+|+.|+++|. +..|+++||.+||+.||.++||++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~--------------~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 3 MGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFL--------------GHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCCEETTTTEECCSCEECCTTSBEETTTCBCTTTCCBCS--------------SSCCEEETTEEECHHHHHHHCSCC
T ss_pred cCCCCCcccCCEecceEEEECccccccCcCEECCCCCCCC--------------CCceEeECCcEECHHHHHHHhCCC
Confidence 4568999999999999999999999999999988887764 567999999999999999999975
No 51
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=4e-14 Score=114.37 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=59.8
Q ss_pred cccccccccCcccc--CceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecHhHHhhHhCCC
Q psy10533 375 LFGNLCFVCNQVIG--GDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNL 452 (594)
Q Consensus 375 ~~~~~C~~C~~~I~--g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f~~~ 452 (594)
.++++|.+|+++|. +++|.|+|+.||++||+|..|+++|. +..|+++||++||+.||.++|+++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~--------------~~~~~~~~~~~yC~~cy~~~f~~~ 68 (72)
T 1wyh_A 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLG--------------SRSFVPDKGAHYCVPCYENKFASG 68 (72)
T ss_dssp CCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTT--------------TSCEEEETTEEEEHHHHHHHTSCC
T ss_pred ccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCC--------------CCccCCcCCeEECHHHHHHHccCc
Confidence 45689999999997 68899999999999999998887765 557999999999999999999999
Q ss_pred CCc
Q psy10533 453 CFV 455 (594)
Q Consensus 453 C~~ 455 (594)
|+.
T Consensus 69 C~~ 71 (72)
T 1wyh_A 69 PSS 71 (72)
T ss_dssp CCC
T ss_pred CCC
Confidence 963
No 52
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.47 E-value=3e-14 Score=114.78 Aligned_cols=65 Identities=71% Similarity=1.437 Sum_probs=61.2
Q ss_pred CCCCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhcc
Q psy10533 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFA 66 (594)
Q Consensus 2 ~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~ 66 (594)
.+..++|++|+++|++.|.+|.++|+.||+.||+|..|+++|.+..|+.++|++||+.||.++|+
T Consensus 8 ~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 8 GSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred CcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 35678999999999999999899999999999999999999998899999999999999999985
No 53
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=5.1e-14 Score=119.08 Aligned_cols=73 Identities=32% Similarity=0.615 Sum_probs=66.9
Q ss_pred cccccCCCCCCCCCCCCCCcceeEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCCc
Q psy10533 268 CLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCF 340 (594)
Q Consensus 268 C~~c~~~~~~~~C~~C~~~I~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~ 340 (594)
....+...+.++|.+|+++|.+++|.++|+.||++||+|..|+++|.+..|+++++++||..||.++|+++|.
T Consensus 16 ~~~~~~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~ 88 (90)
T 2dar_A 16 AEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPS 88 (90)
T ss_dssp CEEECTTTCCCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCC
T ss_pred cccCCCCCCCCCCccCCCEecceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCC
Confidence 3334566788999999999999999999999999999999999999988899999999999999999999994
No 54
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=5.4e-14 Score=114.96 Aligned_cols=67 Identities=22% Similarity=0.453 Sum_probs=59.9
Q ss_pred cccccccccCcccc-CceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecH-hHHhhHhCCC
Q psy10533 375 LFGNLCFVCNQVIG-GDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCE-THYHQLFGNL 452 (594)
Q Consensus 375 ~~~~~C~~C~~~I~-g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~-~~y~~~f~~~ 452 (594)
.+.++|.+|+++|. ++.|.|+++.||++||+|..|+++|. +..|+++||+|||+ .||.++|+++
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~--------------~~~~~~~~g~~yC~~~cy~~~f~~k 72 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLT--------------PGGHAEHDGKPFCHKPCYATLFGSG 72 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCC--------------TTSCEEETTEEECTTTHHHHHSCSS
T ss_pred CCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccC--------------CCceEeECCEEecchHHHHHhcccc
Confidence 45679999999997 88999999999999999988887764 56789999999999 7999999999
Q ss_pred CCc
Q psy10533 453 CFV 455 (594)
Q Consensus 453 C~~ 455 (594)
|.+
T Consensus 73 c~g 75 (76)
T 2cu8_A 73 PSS 75 (76)
T ss_dssp CSC
T ss_pred cCC
Confidence 974
No 55
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.46 E-value=3.1e-14 Score=117.91 Aligned_cols=69 Identities=17% Similarity=0.369 Sum_probs=54.2
Q ss_pred cccccccCccc-cCceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecHhHHhhHhCCCCCc
Q psy10533 377 GNLCFVCNQVI-GGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFV 455 (594)
Q Consensus 377 ~~~C~~C~~~I-~g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f~~~C~~ 455 (594)
.++|.+|+++| .++.|.|+++.||++||+|+.|+++|. +..|+++||++||+.||.++|+++|.+
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~--------------~~~~~~~~~~~yC~~cy~~~f~~~c~g 72 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLD--------------STTVAIHDAEVYCKSCYGKKYGPKGYG 72 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEEC--------------SSCCEEETTEEECSHHHHHHCC-----
T ss_pred CCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCC--------------CCCeEeeCCEEECHHHHHHHhCCcccc
Confidence 56999999999 588999999999999999999887775 456899999999999999999999999
Q ss_pred CCCC
Q psy10533 456 CNQN 459 (594)
Q Consensus 456 C~~~ 459 (594)
|++.
T Consensus 73 cg~g 76 (81)
T 1a7i_A 73 YGQG 76 (81)
T ss_dssp ----
T ss_pred cCCc
Confidence 9975
No 56
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=4.3e-14 Score=114.25 Aligned_cols=65 Identities=31% Similarity=0.623 Sum_probs=61.4
Q ss_pred CCCCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhcc
Q psy10533 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFA 66 (594)
Q Consensus 2 ~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~ 66 (594)
++..++|++|+++|++.+.+|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 2 SSGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CSCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 45789999999999988888899999999999999999999999999999999999999999996
No 57
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=6.9e-14 Score=118.00 Aligned_cols=65 Identities=25% Similarity=0.546 Sum_probs=60.6
Q ss_pred CCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhccCCcC
Q psy10533 4 GNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPCCG 70 (594)
Q Consensus 4 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~p~c~ 70 (594)
..++|++|+++|++ .+|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+++
T Consensus 24 ~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 24 RMPLCDKCGSGIVG--AVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp SCCBCTTTCCBCCS--CCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred cCCCcccCCCEecc--cEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 45789999999986 567999999999999999999999999999999999999999999999976
No 58
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=7.6e-14 Score=112.19 Aligned_cols=68 Identities=24% Similarity=0.462 Sum_probs=62.0
Q ss_pred CCCCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhccCCcCC
Q psy10533 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPCCGN 71 (594)
Q Consensus 2 ~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~p~c~~ 71 (594)
+.+.++|++|+++|++ .+|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++.+.
T Consensus 2 s~~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~s 69 (70)
T 2d8x_A 2 SSGSSGCHQCGEFIIG--RVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPSS 69 (70)
T ss_dssp CCCSSBCSSSCCBCCS--CCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSCC
T ss_pred CCCCCcCccCCCEecc--eEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCCC
Confidence 4578899999999984 4679999999999999999999999999999999999999999999987653
No 59
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=3.2e-14 Score=117.30 Aligned_cols=65 Identities=20% Similarity=0.424 Sum_probs=60.6
Q ss_pred CCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhccCCcC
Q psy10533 4 GNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPCCG 70 (594)
Q Consensus 4 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~p~c~ 70 (594)
..++|++|+++|++ .+|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+|+++
T Consensus 14 ~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 14 KLPMCDKCGTGIVG--VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCSSSCCCCCS--SCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCccccCCCCccC--cEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 46799999999986 367999999999999999999999988999999999999999999999976
No 60
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=7.9e-14 Score=112.62 Aligned_cols=66 Identities=24% Similarity=0.552 Sum_probs=62.0
Q ss_pred CCCCCCCCCCCCcce--eEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCCc
Q psy10533 275 MGIPICGACRRPIEE--RVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCF 340 (594)
Q Consensus 275 ~~~~~C~~C~~~I~~--~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~ 340 (594)
+++++|+.|+++|.+ .+|.++|+.||++||+|..|+++|.+..|+++++++||..||.++|+++|+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1x4k_A 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPS 70 (72)
T ss_dssp SCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCC
T ss_pred ccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCC
Confidence 567899999999995 689999999999999999999999988999999999999999999999994
No 61
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=7.8e-14 Score=118.18 Aligned_cols=68 Identities=26% Similarity=0.628 Sum_probs=63.1
Q ss_pred CCCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhccCCcCC
Q psy10533 3 LGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPCCGN 71 (594)
Q Consensus 3 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~p~c~~ 71 (594)
.+.++|++|+++|++.|.+ .++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+|+|..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v-~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~ 80 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERL-LANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNY 80 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEE-ECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCC
T ss_pred CCCCcCccCCCccCCceeE-EECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCc
Confidence 3567999999999987765 8999999999999999999999989999999999999999999999975
No 62
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=1.2e-13 Score=113.90 Aligned_cols=67 Identities=21% Similarity=0.458 Sum_probs=59.8
Q ss_pred CCCCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeEEeCCccCChhHHHhhccCCcCC
Q psy10533 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPCCGN 71 (594)
Q Consensus 2 ~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~~~p~c~~ 71 (594)
.+..++|++|+++|+ +..|.++|+.||++||+|..|+++|.+.. +.++|+|||+.||.++|+|+++.
T Consensus 12 ~~~~~~C~~C~~~I~--~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~ss 78 (79)
T 2cor_A 12 GLGKYICQKCHAIID--EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGPSS 78 (79)
T ss_dssp CCCCCBCTTTCCBCC--SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSSCC
T ss_pred ccCCCCCccCCCEec--ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCCCC
Confidence 356789999999998 35569999999999999999999999875 59999999999999999998764
No 63
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=9.4e-14 Score=114.88 Aligned_cols=64 Identities=34% Similarity=0.637 Sum_probs=57.5
Q ss_pred cccccccCcccc-CceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecHhHHhhHhCCCCCc
Q psy10533 377 GNLCFVCNQVIG-GDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFV 455 (594)
Q Consensus 377 ~~~C~~C~~~I~-g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f~~~C~~ 455 (594)
.++|.+|+++|. ++.|.|+++.||++||+|..|+++|. + .|+++||+|||+.||.++|+++|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~--------------~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT--------------G-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCS--------------S-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcC--------------C-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 468999999995 88999999999999999998887764 3 5899999999999999999999974
No 64
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=1.5e-13 Score=113.79 Aligned_cols=74 Identities=23% Similarity=0.472 Sum_probs=63.2
Q ss_pred CCCcCcccccccccccccccCccccCceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCC-EeecH
Q psy10533 364 GLGYCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKG-LAYCE 442 (594)
Q Consensus 364 g~~~C~~~~~~~~~~~C~~C~~~I~g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg-~~yC~ 442 (594)
+.+||..||+++|+++|.+|+++|.+++|+|+++.||++||+|..|+++|. +..++..++ .+||.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~--------------~~~~~~~~~~~~~C~ 67 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFP--------------PGDRVTFNGKECMCQ 67 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCSCCEEETTEEECTTTSSCSSSCCCCC--------------SSSCEEEETTEEEEH
T ss_pred CCCcchHHHHhHhCCcCccccCEeccceEEECCceeCccCCccccCCCCCC--------------CCCEEEeCCCCEECh
Confidence 468999999999999999999999999999999999999999999988775 333445455 57999
Q ss_pred hHHhhHhCC
Q psy10533 443 THYHQLFGN 451 (594)
Q Consensus 443 ~~y~~~f~~ 451 (594)
.||.+++++
T Consensus 68 ~C~~~~~~~ 76 (81)
T 1v6g_A 68 KCSLPVSVS 76 (81)
T ss_dssp HHHSCCSSC
T ss_pred hhhcccCCC
Confidence 999887653
No 65
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=1e-13 Score=114.81 Aligned_cols=74 Identities=27% Similarity=0.373 Sum_probs=66.2
Q ss_pred cccccccccCCCCCCCCCCCCCCcceeEEEEcCccccccCcCCccccCCCCCCcccccCC-eecchhhhhhhhcC
Q psy10533 264 NELYCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKG-LAYCETHYHQLFGN 337 (594)
Q Consensus 264 g~~yC~~c~~~~~~~~C~~C~~~I~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g-~~yC~~cy~~~f~~ 337 (594)
..+||.+||.++++++|+.|+++|.+++|.++++.||++||+|..|+++|..+.++..++ .+||..||.+++..
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVS 76 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCSCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSSC
T ss_pred CCCcchHHHHhHhCCcCccccCEeccceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCCC
Confidence 468999999999999999999999999999999999999999999999998767776666 46999999877653
No 66
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=1.5e-13 Score=111.04 Aligned_cols=65 Identities=20% Similarity=0.547 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCcce----eEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCC
Q psy10533 275 MGIPICGACRRPIEE----RVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLC 339 (594)
Q Consensus 275 ~~~~~C~~C~~~I~~----~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C 339 (594)
.++++|.+|+++|.+ ++|.++++.||++||+|..|+++|.+..|+++++++||..||.++|+|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 457899999999996 78999999999999999999999998889999999999999999999876
No 67
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=1.8e-13 Score=112.85 Aligned_cols=65 Identities=17% Similarity=0.310 Sum_probs=58.6
Q ss_pred cccccccCccccCceEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecHhHHhhHhCCCCCc
Q psy10533 377 GNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFV 455 (594)
Q Consensus 377 ~~~C~~C~~~I~g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f~~~C~~ 455 (594)
.++|.+|+++|.+++|.|+++.||++||+|..|+++|. +..|+++||++||+.||.++|++++.+
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~--------------~~~~~~~~g~~yC~~cy~~~~~p~g~g 79 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLK--------------QKGHFFVEDQIYCEKHARERVSGPSSG 79 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCCCHH--------------HHCCEESSSCEECHHHHHHHHSSCCCC
T ss_pred CCccccCCCCccCcEEEECcceeCcCcCeeCCCCCCCC--------------CCCeEeECCEEECHHHHHHHhCCCCCC
Confidence 46999999999999999999999999999999988875 456889999999999999999998753
No 68
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=2.6e-13 Score=111.01 Aligned_cols=66 Identities=29% Similarity=0.663 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCcce--eEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCCc
Q psy10533 275 MGIPICGACRRPIEE--RVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCF 340 (594)
Q Consensus 275 ~~~~~C~~C~~~I~~--~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~ 340 (594)
.+.++|++|+++|.+ .+|.++|+.||++||+|..|+++|.++.|++++|++||..||.++|+++|+
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 457899999999973 678899999999999999999999988899999999999999999999994
No 69
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=4.2e-13 Score=107.82 Aligned_cols=64 Identities=23% Similarity=0.437 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCcceeEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCC
Q psy10533 276 GIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLC 339 (594)
Q Consensus 276 ~~~~C~~C~~~I~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C 339 (594)
+.++|.+|+++|.+++|.++++.||++||+|..|+++|.+..|+++++++||..||.++|+++.
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 67 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGP 67 (70)
T ss_dssp CSSBCSSSCCBCCSCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCS
T ss_pred CCCcCccCCCEecceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCC
Confidence 4678999999999999999999999999999999999998889999999999999999999875
No 70
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.36 E-value=2.3e-13 Score=113.09 Aligned_cols=65 Identities=23% Similarity=0.443 Sum_probs=58.8
Q ss_pred CCCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCCCCCeE--EeCCccCChhHHHhhccCC
Q psy10533 3 LGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFY--EFEGRKYCEHDFHVLFAPC 68 (594)
Q Consensus 3 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~--~~~~~~yC~~~y~~~~~p~ 68 (594)
.+.++|++|+++|+..|.+ .++++.||+.||+|..|+++|....|+ ++||++||+.||.++|++-
T Consensus 13 ~~~~~C~~C~~~I~~~e~v-~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~ 79 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERL-CVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGP 79 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBC-CBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCC
T ss_pred CCCCCCcccCCCcccceEE-EECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCC
Confidence 4678999999999988776 699999999999999999999999998 4799999999999998753
No 71
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.35 E-value=7.3e-13 Score=107.50 Aligned_cols=65 Identities=17% Similarity=0.368 Sum_probs=58.8
Q ss_pred CCCCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCC-CCCeEEeCCccCChhHHHhhccCC
Q psy10533 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFP-GGIFYEFEGRKYCEHDFHVLFAPC 68 (594)
Q Consensus 2 ~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~~y~~~~~p~ 68 (594)
++..++|++|+++|.+ .+|.++|+.||++||+|+.|+++|. +..|+.+++++||..||.+++..+
T Consensus 2 s~~~~~C~~C~~~I~~--~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 2 SSGSSGCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp CCSCCSCSSSCCCCSS--CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred CcCcCCcccCCCEecC--eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 3457899999999986 5679999999999999999999999 889999999999999999998743
No 72
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.35 E-value=5e-13 Score=105.92 Aligned_cols=61 Identities=28% Similarity=0.663 Sum_probs=56.2
Q ss_pred CCcccCCCcccccCceeeecCCcccc--cCCcCCCCCCCCCCCCCeEEeCCccCC-hhHHHhhc
Q psy10533 5 NMYCSRCNEGFEPEEKIVNSNGELWH--QQCFVCAQCFRPFPGGIFYEFEGRKYC-EHDFHVLF 65 (594)
Q Consensus 5 ~~~C~~C~~~i~~~e~~~~~~~~~~H--~~CF~C~~C~~~L~~~~~~~~~~~~yC-~~~y~~~~ 65 (594)
.++|++|+++|++++.+|.++|+.|| +.||+|+.|+++|.+..|+.++|+||| ..||++++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~~ 65 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRMS 65 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTTC
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhhC
Confidence 46899999999987678899999999 999999999999999999999999999 89998763
No 73
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.34 E-value=4.8e-13 Score=108.58 Aligned_cols=64 Identities=25% Similarity=0.431 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCcceeEEEEcCccccccCcCCccccCCCC-CCcccccCCeecchhhhhhhhcCC
Q psy10533 275 MGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFL-GHRHYEKKGLAYCETHYHQLFGNL 338 (594)
Q Consensus 275 ~~~~~C~~C~~~I~~~~v~a~g~~wH~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~cy~~~f~~~ 338 (594)
+++++|++|+++|.+++|.++++.||++||+|..|+++|. +..|+++++++||..||.++++..
T Consensus 3 ~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 3 SGSSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp CSCCSCSSSCCCCSSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred cCcCCcccCCCEecCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 4678999999999999999999999999999999999998 778999999999999999988753
No 74
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.34 E-value=6.4e-13 Score=112.03 Aligned_cols=65 Identities=32% Similarity=0.521 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCcceeEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCC
Q psy10533 275 MGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLC 339 (594)
Q Consensus 275 ~~~~~C~~C~~~I~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C 339 (594)
...++|.+|+++|.+++|.++++.||++||+|..|+++|.+..|+++++++||..||.++|++++
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~ 87 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPS 87 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCC
T ss_pred CcCCCcccCCCEecccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 34688999999999999999999999999999999999998889999999999999999999987
No 75
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.34 E-value=1.1e-12 Score=111.11 Aligned_cols=66 Identities=21% Similarity=0.437 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCcce-eEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCCc
Q psy10533 275 MGIPICGACRRPIEE-RVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCF 340 (594)
Q Consensus 275 ~~~~~C~~C~~~I~~-~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~ 340 (594)
...++|..|+++|.+ +.|.++++.||++||+|..|+++|.+..|+++++++||..||.++|+++|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~ 79 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGN 79 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSC
T ss_pred CCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcC
Confidence 346889999999987 788999999999999999999999988899999999999999999999995
No 76
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.33 E-value=4.9e-13 Score=110.25 Aligned_cols=64 Identities=28% Similarity=0.481 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCcceeEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhcCCC
Q psy10533 275 MGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLC 339 (594)
Q Consensus 275 ~~~~~C~~C~~~I~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C 339 (594)
.+.++|++|+++|.+++|.++|+.||++||+|..|+++|.+. +++++|++||..||.++|+|++
T Consensus 13 ~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~g~~yC~~cy~~~f~p~~ 76 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCHDKMGVSGP 76 (79)
T ss_dssp CCCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTT-CEEETTEEECHHHHHTTSCCSS
T ss_pred cCCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCC-CEeECCEEeCHHHHHHhCCCCC
Confidence 457899999999999889999999999999999999999976 5699999999999999999876
No 77
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.32 E-value=6.1e-13 Score=119.10 Aligned_cols=66 Identities=23% Similarity=0.535 Sum_probs=62.1
Q ss_pred CcccCCCcccccCceeeecCCcccccCCcCCCCCCCCC-CCCCeEEeCCccCChhHHHhhccCCcCC
Q psy10533 6 MYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPF-PGGIFYEFEGRKYCEHDFHVLFAPCCGN 71 (594)
Q Consensus 6 ~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~~y~~~~~p~c~~ 71 (594)
++|++|+++|++.|.+|.++++.||+.||+|..|+++| .+..|+.+++++||+.||.++|+++|+.
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~ 75 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGS 75 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCC
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCC
Confidence 58999999999888999999999999999999999999 4668999999999999999999999875
No 78
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.28 E-value=2.2e-12 Score=103.71 Aligned_cols=65 Identities=29% Similarity=0.663 Sum_probs=58.8
Q ss_pred cCCCCCCCCCCCCCCcce--eEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhc
Q psy10533 272 HDKMGIPICGACRRPIEE--RVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 336 (594)
Q Consensus 272 ~~~~~~~~C~~C~~~I~~--~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~ 336 (594)
|.....++|++|+++|.+ .+|.++|+.||++||+|..|+++|.++.|++++|++||..||.++|+
T Consensus 6 y~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred ccCcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 344678899999999995 46789999999999999999999998789999999999999999985
No 79
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.28 E-value=2e-12 Score=115.73 Aligned_cols=62 Identities=23% Similarity=0.584 Sum_probs=56.0
Q ss_pred CCCcccCCCcccccCceeeecCCcccccCCcCCCCCCCCCC--CCCeEEeCCccCChhHHHhhcc
Q psy10533 4 GNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFP--GGIFYEFEGRKYCEHDFHVLFA 66 (594)
Q Consensus 4 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~~y~~~~~ 66 (594)
..++|++|+++|+.. .+|.++|+.||+.||+|..|+++|. +..|+.++|+|||+.||.++|+
T Consensus 60 ~~~~C~~C~~~I~~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 60 SWKRCAGCGGKIADR-FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SCSBBSSSSSBCCSS-SEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred cCCcCcCCCCCcCCc-EEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 357999999999865 4568999999999999999999997 5789999999999999999985
No 80
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.27 E-value=2.7e-12 Score=103.52 Aligned_cols=62 Identities=32% Similarity=0.650 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCCcce--eEEEEcCccccccCcCCccccCCCCCCcccccCCeecchhhhhhhhc
Q psy10533 275 MGIPICGACRRPIEE--RVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 336 (594)
Q Consensus 275 ~~~~~C~~C~~~I~~--~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~ 336 (594)
.++++|.+|+++|.+ ..|.++++.||++||+|..|+++|.+..|+++++++||..||.++|+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 457899999999986 57999999999999999999999988889999999999999999996
No 81
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.26 E-value=2.7e-12 Score=114.87 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=66.6
Q ss_pred cCCCCCC--CCCCCCCCcce--eEEEEcCccccccCcCCccccCCCC-CCcccccCCeecchhhhhhhhcCCCccccccc
Q psy10533 272 HDKMGIP--ICGACRRPIEE--RVVTALGKHWHVEHFVCARCEKPFL-GHRHYEKKGLAYCETHYHQLFGNLCFVCNQVI 346 (594)
Q Consensus 272 ~~~~~~~--~C~~C~~~I~~--~~v~a~g~~wH~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~cy~~~f~~~C~~C~~~i 346 (594)
|.+++.+ +|+.|+++|.+ .+|.|+++.||++||+|..|+++|. +..|+++++++||..||.++|+++|..++..+
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~ 80 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGG 80 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCS
T ss_pred ChhhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCC
Confidence 3456666 99999999995 6778999999999999999999994 56799999999999999999999998777665
Q ss_pred c
Q psy10533 347 G 347 (594)
Q Consensus 347 ~ 347 (594)
.
T Consensus 81 ~ 81 (123)
T 2l3k_A 81 S 81 (123)
T ss_dssp C
T ss_pred c
Confidence 4
No 82
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.25 E-value=4.1e-12 Score=113.73 Aligned_cols=65 Identities=28% Similarity=0.568 Sum_probs=56.5
Q ss_pred ccccccccccCccccCc-eEEecCceeecccccccccCCccccCcccccccCCCcCCCceeecCCEeecHhHHhhHhC
Q psy10533 374 QLFGNLCFVCNQVIGGD-LFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 450 (594)
Q Consensus 374 ~~~~~~C~~C~~~I~g~-~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f~ 450 (594)
..+.++|.+|+++|.+. +|.|+|+.||++||+|..|+++|.+ .+..|+++||++||+.||.++||
T Consensus 58 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~------------~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGD------------IGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGG------------TTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccc------------cCCceEEECCEEeCHHHhhhhcC
Confidence 34568999999999876 5999999999999999999888752 24679999999999999999996
No 83
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.22 E-value=4.1e-12 Score=100.59 Aligned_cols=58 Identities=26% Similarity=0.685 Sum_probs=54.0
Q ss_pred CCCCCCCCCCcc--eeEEEEcCcccc--ccCcCCccccCCCCCCcccccCCeecc-hhhhhhh
Q psy10533 277 IPICGACRRPIE--ERVVTALGKHWH--VEHFVCARCEKPFLGHRHYEKKGLAYC-ETHYHQL 334 (594)
Q Consensus 277 ~~~C~~C~~~I~--~~~v~a~g~~wH--~~CF~C~~C~~~L~~~~f~~~~g~~yC-~~cy~~~ 334 (594)
+++|++|+++|. ++.|.++|+.|| ++||+|+.|+++|.+..|++++|++|| ..||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 578999999999 689999999999 999999999999999899999999999 8888765
No 84
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.12 E-value=1.6e-11 Score=101.89 Aligned_cols=64 Identities=20% Similarity=0.357 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCcce-eEEEEcCccccccCcCCccccCCCCCCccc--ccCCeecchhhhhhhhcCCC
Q psy10533 276 GIPICGACRRPIEE-RVVTALGKHWHVEHFVCARCEKPFLGHRHY--EKKGLAYCETHYHQLFGNLC 339 (594)
Q Consensus 276 ~~~~C~~C~~~I~~-~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~--~~~g~~yC~~cy~~~f~~~C 339 (594)
..++|.+|+++|.+ +.|.++++.||++||+|..|+++|....|+ +++|++||+.||.++|+...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 46789999999965 678899999999999999999999988887 58999999999999987643
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.99 E-value=2e-06 Score=57.34 Aligned_cols=29 Identities=41% Similarity=0.975 Sum_probs=27.0
Q ss_pred CCcccCCCcccccCceeeecCCcccccCCc
Q psy10533 5 NMYCSRCNEGFEPEEKIVNSNGELWHQQCF 34 (594)
Q Consensus 5 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF 34 (594)
+++|++|+|+||++|++ .++|+.||+.||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~-~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKV-NCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCC-CSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeE-EECCeEecccCC
Confidence 57999999999999988 799999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=96.84 E-value=0.00025 Score=47.11 Aligned_cols=28 Identities=21% Similarity=0.542 Sum_probs=25.2
Q ss_pred cccccccCccc-cCceEEecCceeecccc
Q psy10533 377 GNLCFVCNQVI-GGDLFTALNKAWCVHHF 404 (594)
Q Consensus 377 ~~~C~~C~~~I-~g~~i~a~~k~~H~~CF 404 (594)
.++|..|++.| ..+.|.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 35899999999 57889999999999998
No 87
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=68.71 E-value=2 Score=37.07 Aligned_cols=83 Identities=17% Similarity=0.359 Sum_probs=51.6
Q ss_pred cccccCccccCc-------eEEecCceeecccc--------cccccCCcccc----------CcccccccCCCcCCC---
Q psy10533 379 LCFVCNQVIGGD-------LFTALNKAWCVHHF--------ACSTLGKHWHV----------EHFVCARCEKPFLGH--- 430 (594)
Q Consensus 379 ~C~~C~~~I~g~-------~i~a~~k~~H~~CF--------~C~~C~~~l~~----------~~f~C~~C~~~~~~~--- 430 (594)
.|..|...+... ++..=|..||.+|. .|..|++.+.. +...|+.|.+.|...
T Consensus 9 ~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~~~~~ 88 (133)
T 4ap4_A 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQN 88 (133)
T ss_dssp BCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHHHHHT
T ss_pred CCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCCCCCCCCCCCCcccccccc
Confidence 566666655322 23333777777776 56667666543 556677777766431
Q ss_pred ---ceeecCCEeecHhHHhhH--hCCCCCcCCCCcc
Q psy10533 431 ---RHYEKKGLAYCETHYHQL--FGNLCFVCNQNHT 461 (594)
Q Consensus 431 ---~~~~~dg~~yC~~~y~~~--f~~~C~~C~~~i~ 461 (594)
.....=|..||..|..+. ....|..|..+|.
T Consensus 89 ~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 89 GRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp TCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 133456888998887643 3456999988765
No 88
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=68.59 E-value=1.7 Score=37.55 Aligned_cols=105 Identities=18% Similarity=0.334 Sum_probs=59.0
Q ss_pred cCCccccCCCCCC------cccccCCeecchhhhhhhh--cCCCccccccccCCCCccccccceeccCCCCcCccccccc
Q psy10533 304 FVCARCEKPFLGH------RHYEKKGLAYCETHYHQLF--GNLCFVCNQVIGGDESHYITSRELTYKKGLGYCESHYHQL 375 (594)
Q Consensus 304 F~C~~C~~~L~~~------~f~~~~g~~yC~~cy~~~f--~~~C~~C~~~i~~~~~~~i~~~~~~~~~g~~~C~~~~~~~ 375 (594)
+.|..|...+... .....=|..||..|..+.+ ...|..|.+.+.......+ +...
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l-----------------~i~~ 70 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI-----------------YIGS 70 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC-----------------BCSS
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccc-----------------ccCC
Confidence 4566665544321 0234457778888876664 3468888877765432111 0011
Q ss_pred ccccccccCccccCc-------eEEecCceeecccccccccCCccccCcccccccCCCcCCCc
Q psy10533 376 FGNLCFVCNQVIGGD-------LFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHR 431 (594)
Q Consensus 376 ~~~~C~~C~~~I~g~-------~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~ 431 (594)
....|..|...+... ++..=|..||..|. ..|-.....|+.|..++....
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci------~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL------RDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHH------HHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHH------HHHHHcCCCCCCCCCcCChhc
Confidence 134688887776432 22333888887775 345445567888887776543
No 89
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=57.02 E-value=5.1 Score=32.28 Aligned_cols=41 Identities=22% Similarity=0.583 Sum_probs=30.7
Q ss_pred ccccccCccccCceEEecCceeecccccccccCCccccCcccccccCCCcCC
Q psy10533 378 NLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLG 429 (594)
Q Consensus 378 ~~C~~C~~~I~g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~ 429 (594)
..|+.|+.+|.. .++. +.|..|++.+.... .|++|++|+..
T Consensus 3 ~~CP~C~~~l~~-----~~~~-----~~C~~C~~~~~~~a-fCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALER-----NGDT-----AHCETCAKDFSLQA-LCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEE-----CSSE-----EECTTTCCEEEEEE-ECSSSCSCCCE
T ss_pred CCCCCCCCcccc-----CCCc-----eECccccccCCCcc-cCcchhhHHHH
Confidence 478999988742 2232 35889999998877 99999999853
No 90
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=56.93 E-value=7.7 Score=31.24 Aligned_cols=14 Identities=43% Similarity=0.828 Sum_probs=7.9
Q ss_pred cccccccccccCcc
Q psy10533 210 HMCHKCHGLIDDKP 223 (594)
Q Consensus 210 ~~C~~C~~~I~~~~ 223 (594)
.-|..|++.|+.+.
T Consensus 52 yFC~~C~~LiSkkr 65 (81)
T 2jrp_A 52 YFCQNGHGLISKKR 65 (81)
T ss_dssp ECCTTTTCCCCTTS
T ss_pred eeeccCCCEeecce
Confidence 44666666665443
No 91
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.58 E-value=8.5 Score=29.36 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=20.5
Q ss_pred cCCceeeccccccccccccCccccccccccccCc
Q psy10533 189 SQGRALCHECNAQAKAVGFGKHMCHKCHGLIDDK 222 (594)
Q Consensus 189 ~dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~~ 222 (594)
.=|+.||..|..+..........|..|...|..+
T Consensus 37 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 37 DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 4567788888766432112345777777777543
No 92
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=45.65 E-value=11 Score=31.40 Aligned_cols=44 Identities=30% Similarity=0.727 Sum_probs=24.6
Q ss_pred cCCCCccccccccEecCCceeeccccccccc---cccCccccccccccccCccee
Q psy10533 174 CEHCSKELADLGFIRSQGRALCHECNAQAKA---VGFGKHMCHKCHGLIDDKPLK 225 (594)
Q Consensus 174 C~~C~~~L~~~~f~~~dg~~~C~~C~~~~~~---~~~~~~~C~~C~~~I~~~~i~ 225 (594)
|..|.+.+ .-.++|++|...+.- =+....-|..|++.|..+.|.
T Consensus 51 C~~C~~~f--------~~~a~CPdC~q~LevLkACGAvdYFC~~chgLiSKkRV~ 97 (101)
T 2jne_A 51 CRSCGEFI--------EMKALCPDCHQPLQVLKACGAVDYFCQHGHGLISKKRVE 97 (101)
T ss_dssp ETTTCCEE--------EEEEECTTTCSBCEEEEETTEEEEEETTTTEEECTTTSE
T ss_pred Cccccchh--------hccccCcchhhHHHHHHHhcCcchhhccCCceeecceEE
Confidence 77776543 235677777765421 112235577777777655443
No 93
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=45.18 E-value=16 Score=28.19 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=33.9
Q ss_pred ccccCCCCccccccccEecCCceeeccccccccccccCccccccccccccCcc
Q psy10533 171 CFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHMCHKCHGLIDDKP 223 (594)
Q Consensus 171 CF~C~~C~~~L~~~~f~~~dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~~~ 223 (594)
-|.|..|...+.+ +....-|+.||..|-.+... .....|..|++.+....
T Consensus 8 ~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~--~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 8 YFRCPISLELMKD-PVIVSTGQTYERSSIQKWLD--AGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHT--TTCCBCTTTCCBCSSCC
T ss_pred cCCCCCccccccC-CEEcCCCCeecHHHHHHHHH--HCcCCCCCCcCCCChhh
Confidence 4678888777755 45556889999999876542 22467877877775443
No 94
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.63 E-value=12 Score=28.10 Aligned_cols=48 Identities=23% Similarity=0.513 Sum_probs=27.6
Q ss_pred cccCCCCccccccccEecCCceeeccccccccccccCccccccccccccCc
Q psy10533 172 FRCEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHMCHKCHGLIDDK 222 (594)
Q Consensus 172 F~C~~C~~~L~~~~f~~~dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~~ 222 (594)
+.|..|...+.+. ....=|+.||..|..+... .....|..|...|..+
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 16 YKCEKCHLVLCSP-KQTECGHRFCESCMAALLS--SSSPKCTACQESIVKD 63 (66)
T ss_dssp EECTTTCCEESSC-CCCSSSCCCCHHHHHHHHT--TSSCCCTTTCCCCCTT
T ss_pred CCCCCCChHhcCe-eECCCCCHHHHHHHHHHHH--hCcCCCCCCCcCCChh
Confidence 3455555554432 2235577888888776432 2345677777777543
No 95
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=37.03 E-value=28 Score=24.69 Aligned_cols=40 Identities=23% Similarity=0.489 Sum_probs=26.1
Q ss_pred CCCcccCCCcccccCceeeec--CCcccccCCc--------CCCCCCCCC
Q psy10533 4 GNMYCSRCNEGFEPEEKIVNS--NGELWHQQCF--------VCAQCFRPF 43 (594)
Q Consensus 4 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L 43 (594)
+...|+.|.+.+..++.++.. =+..||..|+ +|..|++.|
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 456899998888665544433 3667888776 355555544
No 96
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.06 E-value=15 Score=28.90 Aligned_cols=34 Identities=18% Similarity=0.417 Sum_probs=20.7
Q ss_pred cCCceeeccccccccccccCccccccccccccCc
Q psy10533 189 SQGRALCHECNAQAKAVGFGKHMCHKCHGLIDDK 222 (594)
Q Consensus 189 ~dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~~ 222 (594)
.=|+.||..|..+..........|..|.+++...
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 36 HCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3577788888766533211236777777776543
No 97
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.03 E-value=42 Score=25.38 Aligned_cols=45 Identities=18% Similarity=0.398 Sum_probs=31.1
Q ss_pred cccccccCCCcCCCceeecCCEeecHhHHhhHh--CCCCCcCCCCcc
Q psy10533 417 HFVCARCEKPFLGHRHYEKKGLAYCETHYHQLF--GNLCFVCNQNHT 461 (594)
Q Consensus 417 ~f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f--~~~C~~C~~~i~ 461 (594)
.+.|..|...+........=|..||..|..+.+ ...|..|.+++.
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 455666666665533333678899999987655 567999999865
No 98
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=34.84 E-value=45 Score=25.52 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=33.5
Q ss_pred CcccccccCCCcCCCceeecCCEeecHhHHhhHhCC---CCCcCCCCcc
Q psy10533 416 EHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGN---LCFVCNQNHT 461 (594)
Q Consensus 416 ~~f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f~~---~C~~C~~~i~ 461 (594)
+.+.|.-|...|.. .....-|..||..+..+.+.. .|..|.+++.
T Consensus 7 ~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred ccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 45667777766644 455678999999999887753 5999999865
No 99
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=34.63 E-value=36 Score=23.97 Aligned_cols=43 Identities=30% Similarity=0.638 Sum_probs=28.3
Q ss_pred CCCCcccCCCcccccCc--eeeecCCcccccCCc--------CCCCCCCCCCC
Q psy10533 3 LGNMYCSRCNEGFEPEE--KIVNSNGELWHQQCF--------VCAQCFRPFPG 45 (594)
Q Consensus 3 ~~~~~C~~C~~~i~~~e--~~~~~~~~~~H~~CF--------~C~~C~~~L~~ 45 (594)
.+...|+.|.+.+...+ .++..=+..||..|+ +|..|++.|.+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 35678999998875432 222233667888886 58888877653
No 100
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=34.49 E-value=14 Score=28.36 Aligned_cols=30 Identities=13% Similarity=0.448 Sum_probs=18.4
Q ss_pred CCCcccCCCcccccCceeeecC---CcccccCC
Q psy10533 4 GNMYCSRCNEGFEPEEKIVNSN---GELWHQQC 33 (594)
Q Consensus 4 ~~~~C~~C~~~i~~~e~~~~~~---~~~~H~~C 33 (594)
....|..|++++...+..|... .+.||..|
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhc
Confidence 3456777777776666666666 45667655
No 101
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.22 E-value=44 Score=25.61 Aligned_cols=41 Identities=27% Similarity=0.767 Sum_probs=24.0
Q ss_pred CCcccCCCcccccCceeee-cCCcccccCCcC--------CCCCCCCCCC
Q psy10533 5 NMYCSRCNEGFEPEEKIVN-SNGELWHQQCFV--------CAQCFRPFPG 45 (594)
Q Consensus 5 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF~--------C~~C~~~L~~ 45 (594)
...|+.|.+.+...+.++. .=+..||..|+. |-.|++.|..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 4578888877754444322 235567777763 5555555543
No 102
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.05 E-value=36 Score=25.64 Aligned_cols=44 Identities=16% Similarity=0.304 Sum_probs=30.6
Q ss_pred cccccccCCCcCCCceeecCCEeecHhHHhhHhC-----CCCCcCCCCcc
Q psy10533 417 HFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFG-----NLCFVCNQNHT 461 (594)
Q Consensus 417 ~f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f~-----~~C~~C~~~i~ 461 (594)
.+.|..|...+.. .....=|..||..|..+.+. ..|..|.++|.
T Consensus 20 ~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 20 EVICPICLDILQK-PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CCEeccCCcccCC-eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 3456666665553 33346788899999988774 26999998865
No 103
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=33.94 E-value=26 Score=25.98 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCCeEEeCCccCC-hhHHHh
Q psy10533 35 VCAQCFRPFPGGIFYEFEGRKYC-EHDFHV 63 (594)
Q Consensus 35 ~C~~C~~~L~~~~~~~~~~~~yC-~~~y~~ 63 (594)
.|..|+-.+....-+.++|+.|| +.|.+.
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 47889999988888999999999 777653
No 104
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=33.50 E-value=28 Score=25.87 Aligned_cols=29 Identities=24% Similarity=0.520 Sum_probs=21.4
Q ss_pred cccccCCCcCCCceeecCCEeec-HhHHhh
Q psy10533 419 VCARCEKPFLGHRHYEKKGLAYC-ETHYHQ 447 (594)
Q Consensus 419 ~C~~C~~~~~~~~~~~~dg~~yC-~~~y~~ 447 (594)
-|..|..-+....-+.+||+.|| +.+...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 35666666666677899999999 777653
No 105
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=32.24 E-value=18 Score=26.95 Aligned_cols=51 Identities=18% Similarity=0.465 Sum_probs=31.7
Q ss_pred cccCCCCc-cccccc---cEecCCceeeccccccccccccCccccccccccccCcce
Q psy10533 172 FRCEHCSK-ELADLG---FIRSQGRALCHECNAQAKAVGFGKHMCHKCHGLIDDKPL 224 (594)
Q Consensus 172 F~C~~C~~-~L~~~~---f~~~dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~~~i 224 (594)
+.|..|.. .+.+.. ....=|+.+|..|..+.+. .....|..|.+++..+.+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV--RGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH--TTSSSCTTTCCCCSSCCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH--cCCCcCCCCCCccccccc
Confidence 45777766 454432 2345688899999876532 234568888877764443
No 106
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=31.80 E-value=35 Score=26.85 Aligned_cols=46 Identities=20% Similarity=0.530 Sum_probs=32.9
Q ss_pred CcccccccCCCcCCC--ceee-cCCEeecHhHHhhHh---CCCCCcCCCCcc
Q psy10533 416 EHFVCARCEKPFLGH--RHYE-KKGLAYCETHYHQLF---GNLCFVCNQNHT 461 (594)
Q Consensus 416 ~~f~C~~C~~~~~~~--~~~~-~dg~~yC~~~y~~~f---~~~C~~C~~~i~ 461 (594)
+.+.|+.|..|+... .+.. .=|..+|..|+.+.. ...|..|.+++.
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 456788888887532 2221 268899999999876 347999999865
No 107
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=30.18 E-value=24 Score=29.50 Aligned_cols=46 Identities=20% Similarity=0.568 Sum_probs=29.2
Q ss_pred cCCCCccccccccEecCCceeeccccccccccccCccccccccccccC
Q psy10533 174 CEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHMCHKCHGLIDD 221 (594)
Q Consensus 174 C~~C~~~L~~~~f~~~dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~ 221 (594)
|..|+.|+....-...=+..+|-+|+..... .....|..|..+|..
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~--~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEK--KGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHH--TTCCBCTTTCCBCSE
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHh--ccCCCCcCcCCeeee
Confidence 5556666554333444567888888865311 234789999999863
No 108
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.87 E-value=43 Score=24.78 Aligned_cols=43 Identities=19% Similarity=0.553 Sum_probs=28.8
Q ss_pred ccccccCCCcCCCceeecCCEeecHhHHhhHh---CCCCCcCCCCcc
Q psy10533 418 FVCARCEKPFLGHRHYEKKGLAYCETHYHQLF---GNLCFVCNQNHT 461 (594)
Q Consensus 418 f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f---~~~C~~C~~~i~ 461 (594)
+.|..|...+... ....=|..||..|..+.+ ...|..|.+++.
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 16 YKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp EECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 4455555544432 224678889999998877 346999998865
No 109
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.42 E-value=24 Score=29.15 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=20.2
Q ss_pred cCCceeeccccccccccccCccccccccccccCcc
Q psy10533 189 SQGRALCHECNAQAKAVGFGKHMCHKCHGLIDDKP 223 (594)
Q Consensus 189 ~dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~~~ 223 (594)
.=|+.||..|..+..........|..|...|..+.
T Consensus 38 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 38 KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 45677787776654332122346777777765443
No 110
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=29.24 E-value=14 Score=28.90 Aligned_cols=15 Identities=33% Similarity=0.910 Sum_probs=13.0
Q ss_pred hhhcccccccccccC
Q psy10533 552 LFGNLCFVCNQVIGG 566 (594)
Q Consensus 552 ~~~~~~~~c~~~~~~ 566 (594)
+|+-+|+-|||+|+.
T Consensus 2 iiPVRCFTCGkvi~~ 16 (70)
T 1twf_J 2 IVPVRCFSCGKVVGD 16 (70)
T ss_dssp CCCSBCTTTCCBCTT
T ss_pred CCCeecCCCCCChHH
Confidence 578899999999965
No 111
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=29.13 E-value=26 Score=28.52 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=18.2
Q ss_pred cCCceeeccccccccccccCccccccccccccC
Q psy10533 189 SQGRALCHECNAQAKAVGFGKHMCHKCHGLIDD 221 (594)
Q Consensus 189 ~dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~ 221 (594)
.-|+.||..|..+... ....|..|...+..
T Consensus 40 ~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 40 QCSHNYCSLCIRKFLS---YKTQCPTCCVTVTE 69 (99)
T ss_dssp TTCCEEEHHHHHHHHT---TCCBCTTTCCBCCG
T ss_pred CCCCHhhHHHHHHHHH---CCCCCCCCCCcCCh
Confidence 3467778888765432 23567777766653
No 112
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.88 E-value=72 Score=24.00 Aligned_cols=47 Identities=19% Similarity=0.442 Sum_probs=27.9
Q ss_pred CcCCccccCCCCCCcccccCCeecchhhhhhhh--cCCCccccccccCC
Q psy10533 303 HFVCARCEKPFLGHRHYEKKGLAYCETHYHQLF--GNLCFVCNQVIGGD 349 (594)
Q Consensus 303 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f--~~~C~~C~~~i~~~ 349 (594)
-+.|..|...+........=|..||..|..+.+ ...|..|.+++..+
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 345666655554322222556778888876555 46788888777543
No 113
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=28.44 E-value=12 Score=27.88 Aligned_cols=15 Identities=13% Similarity=0.576 Sum_probs=12.2
Q ss_pred hhhcccccccccccC
Q psy10533 552 LFGNLCFVCNQVIGG 566 (594)
Q Consensus 552 ~~~~~~~~c~~~~~~ 566 (594)
++.-||+.|||+|+.
T Consensus 1 iiPVRCFTCGkvi~~ 15 (55)
T 1ef4_A 1 MIPVRCLSCGKPVSA 15 (55)
T ss_dssp CCSSSCSCTTSCCHH
T ss_pred CCCeecCCCCCChhH
Confidence 467899999999953
No 114
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=28.23 E-value=38 Score=34.15 Aligned_cols=76 Identities=17% Similarity=0.355 Sum_probs=48.6
Q ss_pred ccccccCccccCceEEe----cCceeecccccccccCCccccCcccccccCCCcCCCceeecCC--EeecHhHHhhHhCC
Q psy10533 378 NLCFVCNQVIGGDLFTA----LNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKG--LAYCETHYHQLFGN 451 (594)
Q Consensus 378 ~~C~~C~~~I~g~~i~a----~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~~~~~~~~dg--~~yC~~~y~~~f~~ 451 (594)
..|..|+.+=...+|.. .|..| ..|+.|+..|+.....|..|+.. ....|+..++ +| .........
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~----l~Cs~C~t~W~~~R~~C~~Cg~~-~~l~y~~~e~~~~~---~~~~~~r~e 254 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRY----LSCSLCACEWHYVRIKCSHCEES-KHLAYLSLEHDGQP---AEKAVLRAE 254 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEE----EEETTTCCEEECCTTSCSSSCCC-SCCEEECCCC-CCC---STTCSEEEE
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEE----EEeCCCCCEEeecCcCCcCCCCC-CCeeEEEecCcccc---CCCcceEEE
Confidence 47888877532224442 34443 46899999999999999999987 4556664433 22 011223345
Q ss_pred CCCcCCCCcc
Q psy10533 452 LCFVCNQNHT 461 (594)
Q Consensus 452 ~C~~C~~~i~ 461 (594)
.|..|+.++.
T Consensus 255 ~C~~C~~YlK 264 (309)
T 2fiy_A 255 TCPSCQGYLK 264 (309)
T ss_dssp EETTTTEEEE
T ss_pred EcccccchHh
Confidence 6889988765
No 115
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=27.89 E-value=20 Score=33.94 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=25.0
Q ss_pred cccccccCCCcCCCceeecCCEeecHhHHhh
Q psy10533 417 HFVCARCEKPFLGHRHYEKKGLAYCETHYHQ 447 (594)
Q Consensus 417 ~f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~ 447 (594)
..+|..|+.++....-...||+++|..|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 3567888877777766778999999999976
No 116
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.37 E-value=57 Score=25.76 Aligned_cols=42 Identities=21% Similarity=0.432 Sum_probs=30.3
Q ss_pred CCCcccCCCcccccCceeeecC-----CcccccCCc----------CCCCCCCCCCC
Q psy10533 4 GNMYCSRCNEGFEPEEKIVNSN-----GELWHQQCF----------VCAQCFRPFPG 45 (594)
Q Consensus 4 ~~~~C~~C~~~i~~~e~~~~~~-----~~~~H~~CF----------~C~~C~~~L~~ 45 (594)
....|..|......++.++..= ...||..|+ +|..|+..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4578999998876666665322 278999997 58888887753
No 117
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.25 E-value=35 Score=26.02 Aligned_cols=41 Identities=20% Similarity=0.431 Sum_probs=25.9
Q ss_pred CCCcccCCCcccccCceeeec-CCcccccCCc--------CCCCCCCCCC
Q psy10533 4 GNMYCSRCNEGFEPEEKIVNS-NGELWHQQCF--------VCAQCFRPFP 44 (594)
Q Consensus 4 ~~~~C~~C~~~i~~~e~~~~~-~~~~~H~~CF--------~C~~C~~~L~ 44 (594)
....|+.|.+.+...+.++.. =+..||..|+ +|..|++.+.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 345688888777655444322 3566777776 4777777665
No 118
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.02 E-value=57 Score=24.68 Aligned_cols=40 Identities=15% Similarity=0.332 Sum_probs=30.1
Q ss_pred cCCcccccCCcCCCCCCCC-CCCCCeEEeC--CccCChhHHHhhc
Q psy10533 24 SNGELWHQQCFVCAQCFRP-FPGGIFYEFE--GRKYCEHDFHVLF 65 (594)
Q Consensus 24 ~~~~~~H~~CF~C~~C~~~-L~~~~~~~~~--~~~yC~~~y~~~~ 65 (594)
+....+|+ ..|..|++. +.+.+|.-.+ +--+|+.||..-.
T Consensus 4 ~~~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~ 46 (63)
T 2e5r_A 4 GSSGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGH 46 (63)
T ss_dssp CSSSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCC
T ss_pred CcCCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCCC
Confidence 45677888 999999975 8887776433 4558999998644
No 119
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=26.55 E-value=18 Score=26.50 Aligned_cols=49 Identities=18% Similarity=0.512 Sum_probs=29.5
Q ss_pred cccCCCCcccccc-----c-cEecCCceeeccccccccccccCccccccccccccCcc
Q psy10533 172 FRCEHCSKELADL-----G-FIRSQGRALCHECNAQAKAVGFGKHMCHKCHGLIDDKP 223 (594)
Q Consensus 172 F~C~~C~~~L~~~-----~-f~~~dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~~~ 223 (594)
+.|..|...+.+. . ....=|+.+|..|..+... ....|..|...|..+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKINHKR 58 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH---HCSBCTTTCCBCTTTC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH---cCCCCCCCCccCCccc
Confidence 4566666666432 1 3445678888888766432 2456777777776444
No 120
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=25.66 E-value=31 Score=27.15 Aligned_cols=33 Identities=18% Similarity=0.487 Sum_probs=20.6
Q ss_pred CCceeeccccccccccccCccccccccccccCcce
Q psy10533 190 QGRALCHECNAQAKAVGFGKHMCHKCHGLIDDKPL 224 (594)
Q Consensus 190 dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~~~i 224 (594)
-|+.+|..|..+... .....|..|.+++..+.+
T Consensus 33 CGH~fC~~Cl~~~~~--~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 33 CGYQICRFCWHRIRT--DENGLCPACRKPYPEDPA 65 (78)
T ss_dssp TSCCCCHHHHHHHTT--SSCSBCTTTCCBCSSCSS
T ss_pred CCCCcCHHHHHHHHh--cCCCCCCCCCCccCCCch
Confidence 577788888765431 234567777777765443
No 121
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=25.64 E-value=32 Score=26.33 Aligned_cols=46 Identities=26% Similarity=0.516 Sum_probs=23.2
Q ss_pred ccCCCCccccccccEec-CCceeeccccccccccccCcccccccccccc
Q psy10533 173 RCEHCSKELADLGFIRS-QGRALCHECNAQAKAVGFGKHMCHKCHGLID 220 (594)
Q Consensus 173 ~C~~C~~~L~~~~f~~~-dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~ 220 (594)
.|..|...+.+ ..... =++.||..|..+.... .....|..|.+.+.
T Consensus 17 ~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~-~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 17 LCLICKDIMTD-AVVIPCCGNSYCDECIRTALLE-SDEHTCPTCHQNDV 63 (74)
T ss_dssp SCSSSCCCCTT-CEECSSSCCEECTTHHHHHHHH-SSSSCCSSSCCSSC
T ss_pred CCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHHh-cCCCcCCCCCCcCC
Confidence 34444444433 22333 3777787776654321 11246777766543
No 122
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=25.42 E-value=39 Score=28.27 Aligned_cols=56 Identities=13% Similarity=0.254 Sum_probs=34.2
Q ss_pred cccccCCCcCCCceeecCCEeecHhHHhh---HhCCCCCcCCCCcccccccccchhhhcC
Q psy10533 419 VCARCEKPFLGHRHYEKKGLAYCETHYHQ---LFGNLCFVCNQNHTISLHVSSREAVLSS 475 (594)
Q Consensus 419 ~C~~C~~~~~~~~~~~~dg~~yC~~~y~~---~f~~~C~~C~~~i~~~~~~~~~~~~~~~ 475 (594)
.|..|..||....=+..=...+|-.|+.. .-...|..|+.+|. .+....++.+|-|
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~-rVe~~~~~~if~C 61 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ-RIEQCTRGSLFMC 61 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS-EEEEEEGGGCCCC
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee-eeEEeccCCEEEC
Confidence 35666666654333344566899999876 33457999999875 2222334555443
No 123
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=25.34 E-value=41 Score=25.09 Aligned_cols=41 Identities=24% Similarity=0.440 Sum_probs=24.3
Q ss_pred CCCcccCCCcccccCceeeec-CCcccccCCc--------CCCCCCCCCC
Q psy10533 4 GNMYCSRCNEGFEPEEKIVNS-NGELWHQQCF--------VCAQCFRPFP 44 (594)
Q Consensus 4 ~~~~C~~C~~~i~~~e~~~~~-~~~~~H~~CF--------~C~~C~~~L~ 44 (594)
....|+.|...+...+.++.. =+..||..|+ +|..|+..|.
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 345688887777544443322 3556777665 3666666654
No 124
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=24.67 E-value=20 Score=33.89 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=26.9
Q ss_pred ccccCCCCccccccccEecCCceeecccccc
Q psy10533 171 CFRCEHCSKELADLGFIRSQGRALCHECNAQ 201 (594)
Q Consensus 171 CF~C~~C~~~L~~~~f~~~dg~~~C~~C~~~ 201 (594)
=.+|+.|+....+..-...||+++|.+|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 3579999999998888888999999999865
No 125
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.18 E-value=84 Score=22.49 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=13.2
Q ss_pred cccccccccCCCCCCCCCCCCCCcc
Q psy10533 264 NELYCLRCHDKMGIPICGACRRPIE 288 (594)
Q Consensus 264 g~~yC~~c~~~~~~~~C~~C~~~I~ 288 (594)
+-.||..|..+ ....|..|.+.+.
T Consensus 25 gH~fC~~Ci~~-~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 25 LHTLCSGCLEA-SGMQCPICQAPWP 48 (56)
T ss_dssp SCCSBTTTCSS-SSSSCSSCCSSSS
T ss_pred CCcccHHHHcc-CCCCCCcCCcEee
Confidence 44566666554 2445666666553
No 126
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.56 E-value=62 Score=27.12 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=15.6
Q ss_pred cCCceeeccccccccccccCcccccccccccc
Q psy10533 189 SQGRALCHECNAQAKAVGFGKHMCHKCHGLID 220 (594)
Q Consensus 189 ~dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~ 220 (594)
.=|+.||..|...... ..|..|..++.
T Consensus 40 ~CgH~fC~~Ci~~~~~-----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 40 GCEHIFCSNCVSDCIG-----TGCPVCYTPAW 66 (117)
T ss_dssp SSSCCBCTTTGGGGTT-----TBCSSSCCBCS
T ss_pred CCCCHHHHHHHHHHhc-----CCCcCCCCcCc
Confidence 3466667777655321 45666666654
No 127
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=22.95 E-value=29 Score=25.67 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=6.0
Q ss_pred cccccccCCCcC
Q psy10533 417 HFVCARCEKPFL 428 (594)
Q Consensus 417 ~f~C~~C~~~~~ 428 (594)
.+.|..|++.|.
T Consensus 32 p~~C~~C~k~F~ 43 (60)
T 4gzn_C 32 PRSCPECGKCFR 43 (60)
T ss_dssp CEECTTTCCEES
T ss_pred CeECCCCCCCcC
Confidence 345555555544
No 128
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=22.01 E-value=47 Score=28.85 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=26.6
Q ss_pred ccCCCCccccccccEecCCceeeccccccccccccCccccccccccccCc
Q psy10533 173 RCEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHMCHKCHGLIDDK 222 (594)
Q Consensus 173 ~C~~C~~~L~~~~f~~~dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~~ 222 (594)
.|..|...+.+ +....-|+.||..|..... .....|+.|..+|...
T Consensus 55 ~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~---~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 55 QCIICSEYFIE-AVTLNCAHSFCSYCINEWM---KRKIECPICRKDIKSK 100 (138)
T ss_dssp BCTTTCSBCSS-EEEETTSCEEEHHHHHHHT---TTCSBCTTTCCBCCCE
T ss_pred CCcccCcccCC-ceECCCCCCccHHHHHHHH---HcCCcCCCCCCcCCCC
Confidence 45555555543 3334467788888865532 2345677777777543
No 129
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=21.89 E-value=38 Score=25.89 Aligned_cols=30 Identities=23% Similarity=0.574 Sum_probs=15.3
Q ss_pred cccCCCCccccccccEecCCceeeccccccc
Q psy10533 172 FRCEHCSKELADLGFIRSQGRALCHECNAQA 202 (594)
Q Consensus 172 F~C~~C~~~L~~~~f~~~dg~~~C~~C~~~~ 202 (594)
+.|..|...+.+ .....=|+.||..|..+.
T Consensus 13 ~~C~IC~~~~~~-p~~l~CgH~fC~~Ci~~~ 42 (79)
T 2egp_A 13 VTCPICLELLTE-PLSLDCGHSLCRACITVS 42 (79)
T ss_dssp CEETTTTEECSS-CCCCSSSCCCCHHHHSCC
T ss_pred CCCcCCCcccCC-eeECCCCCHHHHHHHHHH
Confidence 335555444433 222345667777776653
No 130
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.75 E-value=72 Score=24.32 Aligned_cols=30 Identities=10% Similarity=0.265 Sum_probs=15.7
Q ss_pred CceeeccccccccccccCccccccccccccCcc
Q psy10533 191 GRALCHECNAQAKAVGFGKHMCHKCHGLIDDKP 223 (594)
Q Consensus 191 g~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~~~ 223 (594)
++.||..|..+... ....|..|...|..+.
T Consensus 37 ~H~fc~~Ci~~~~~---~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 37 NHLFHDSCIVPWLE---QHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SCEEETTTTHHHHT---TTCSCTTTCCCCCCSC
T ss_pred CCeecHHHHHHHHH---cCCcCcCcCCccCCcc
Confidence 45666666554321 2245666666665443
No 131
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron transfer, Fe reduction, GEO sulfurreducens, cytochrome C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Probab=21.69 E-value=21 Score=32.41 Aligned_cols=109 Identities=20% Similarity=0.377 Sum_probs=56.0
Q ss_pred ccCCCCccccccc-------cEecCCceeeccccccccccccCccccccccccccCcceee--------cCccccccCcc
Q psy10533 173 RCEHCSKELADLG-------FIRSQGRALCHECNAQAKAVGFGKHMCHKCHGLIDDKPLKF--------RGEVYHPYHFN 237 (594)
Q Consensus 173 ~C~~C~~~L~~~~-------f~~~dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~~~i~~--------~~~~~H~~CF~ 237 (594)
.|..|...+.... +.....--+|..|+....+. .....|..|+..+..+.|.+ .+...|..=+.
T Consensus 29 ~C~~CH~~~~~~~~g~~~~t~a~~~~~~~C~~CH~g~~af-~~~~~C~~CH~~~~~~~i~~~~~~~~V~F~H~~H~~~~~ 107 (158)
T 3oue_A 29 KCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAF-SSASDCGKCHPGLKPAKLTYKTSVGEAYFDHDIHLSMFK 107 (158)
T ss_dssp CGGGTBTTTBCSSSCCCCCCHHHHHTTCGGGGTBSSSSBC-CTTSCHHHHCGGGCCCCEEEEETTEEEEECHHHHHTTCC
T ss_pred ChhhhccChhcccccccccccccCCCCCchhhhcCCcccC-ChhhhchhhhhcccccceEeecCCCCccCChhHhCCCCC
Confidence 4555555543322 22223345788888754321 11247889987554444433 22345644488
Q ss_pred cCCCCCCCCCCcccccCCCCcccc-cccccccccccCCC--CC--CCCCCCCC
Q psy10533 238 CTSCGTELNSDAREVKSRPGYTAN-DMNELYCLRCHDKM--GI--PICGACRR 285 (594)
Q Consensus 238 C~~C~~~L~~~~~~~~~~~gy~~~-~~g~~yC~~c~~~~--~~--~~C~~C~~ 285 (594)
|..|...|...... ...++.. .....+|..|++.. +. ..|..|++
T Consensus 108 C~~CH~~v~~~~~~---~~~~tm~~~~~gk~Cg~CH~gk~Af~~~~~C~~CHk 157 (158)
T 3oue_A 108 CADCHTKVFKYRKG---SAPATMADMEKGKSCGVCHNGKDAFSVADDCVKCHN 157 (158)
T ss_dssp GGGTBTTTBCSSTT---SSCCCHHHHHTTCGGGGTBTTTSBCCSSSCGGGTEE
T ss_pred hhhhccchhhcccC---CCCcchhhhhccChhHhhcCCCccCCCcccHHHHcc
Confidence 99998776433210 1111111 01235899998633 22 26887764
No 132
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.58 E-value=51 Score=24.81 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=26.8
Q ss_pred ccccccCccccCceEEecCceeecccccccccCCccccCcccccccCCCcC
Q psy10533 378 NLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFL 428 (594)
Q Consensus 378 ~~C~~C~~~I~g~~i~a~~k~~H~~CF~C~~C~~~l~~~~f~C~~C~~~~~ 428 (594)
..|..|...+...++..-+..||.+|.. .|-.....|+.|..++.
T Consensus 16 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~------~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 16 PECAICLQTCVHPVSLPCKHVFCYLCVK------GASWLGKRCALCRQEIP 60 (71)
T ss_dssp CBCSSSSSBCSSEEEETTTEEEEHHHHH------HCTTCSSBCSSSCCBCC
T ss_pred CCCccCCcccCCCEEccCCCHHHHHHHH------HHHHCCCcCcCcCchhC
Confidence 4788898887665555557777777653 33222345555555543
No 133
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=21.50 E-value=33 Score=28.05 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=24.7
Q ss_pred ccCCCCccccccccE-ecCCceeeccccccccccccCccccccccccccC
Q psy10533 173 RCEHCSKELADLGFI-RSQGRALCHECNAQAKAVGFGKHMCHKCHGLIDD 221 (594)
Q Consensus 173 ~C~~C~~~L~~~~f~-~~dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~ 221 (594)
.|..|...+.+ +.. ..=|+.||..|..+... .....|..|..++..
T Consensus 24 ~C~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~--~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 24 RCFICMEKLRD-ARLCPHCSKLCCFSCIRRWLT--EQRAQCPHCRAPLQL 70 (100)
T ss_dssp BCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHH--HTCSBCTTTCCBCCG
T ss_pred CCccCCccccC-ccccCCCCChhhHHHHHHHHH--HCcCCCCCCCCcCCH
Confidence 34444444433 222 34477888888765432 112467777776653
No 134
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=21.22 E-value=74 Score=26.16 Aligned_cols=48 Identities=8% Similarity=-0.035 Sum_probs=28.3
Q ss_pred CccccCCCCccccccccEecCCceeeccccccccccccCccccccccccccC
Q psy10533 170 KCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHMCHKCHGLIDD 221 (594)
Q Consensus 170 ~CF~C~~C~~~L~~~~f~~~dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~ 221 (594)
+-|.|..|...+.+ +.....|+.||..|-.+... ....|..|++++..
T Consensus 28 ~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~---~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLL---NSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTT---SCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccC-CeECCCCCEEchHHHHHHHH---cCCCCCCCCCCCCh
Confidence 44666666666554 44455788888887655432 23456666665543
No 135
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=20.52 E-value=56 Score=26.67 Aligned_cols=22 Identities=23% Similarity=0.632 Sum_probs=13.1
Q ss_pred cccccccC---CCCCCCCCCCCCCc
Q psy10533 266 LYCLRCHD---KMGIPICGACRRPI 287 (594)
Q Consensus 266 ~yC~~c~~---~~~~~~C~~C~~~I 287 (594)
+.|.+||+ +.+...|.+|+...
T Consensus 44 PvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 44 PACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp CCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred hhhHHHHHHHHhccCccccccCCcc
Confidence 45666664 23456677777654
No 136
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.34 E-value=78 Score=24.24 Aligned_cols=43 Identities=16% Similarity=0.345 Sum_probs=28.3
Q ss_pred ccccccCCCcCCCceeecCCEeecHhHHhhHh--------CCCCCcCCCCcc
Q psy10533 418 FVCARCEKPFLGHRHYEKKGLAYCETHYHQLF--------GNLCFVCNQNHT 461 (594)
Q Consensus 418 f~C~~C~~~~~~~~~~~~dg~~yC~~~y~~~f--------~~~C~~C~~~i~ 461 (594)
+.|..|...+... ....=|..||..|..+.+ ...|..|.+++.
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 20 VTCPICLELLTQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 4455555555432 234567888998887654 457999998865
No 137
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=20.02 E-value=24 Score=26.49 Aligned_cols=32 Identities=22% Similarity=0.595 Sum_probs=19.2
Q ss_pred ecCCceeeccccccccccccCccccccccccccCc
Q psy10533 188 RSQGRALCHECNAQAKAVGFGKHMCHKCHGLIDDK 222 (594)
Q Consensus 188 ~~dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~~ 222 (594)
..=|+.||..|..+... ....|..|...+..+
T Consensus 33 ~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 33 TECGHVFCSQCLRDSLK---NANTCPTCRKKINHK 64 (71)
T ss_dssp CTTSCEEEHHHHHHHHH---HCSBCTTTCCBCCCC
T ss_pred CCCCChHhHHHHHHHHH---cCCCCCCCCCccChh
Confidence 34567788888765432 235677777766543
No 138
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=20.01 E-value=45 Score=27.85 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=27.2
Q ss_pred ccCCCCccccccccEecCCceeeccccccccccccCccccccccccccCcc
Q psy10533 173 RCEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHMCHKCHGLIDDKP 223 (594)
Q Consensus 173 ~C~~C~~~L~~~~f~~~dg~~~C~~C~~~~~~~~~~~~~C~~C~~~I~~~~ 223 (594)
.|..|...+.+ +....-|+.||..|..+... .....|..|..+|....
T Consensus 25 ~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 25 SCQICEHILAD-PVETSCKHLFCRICILRCLK--VMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp BCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH--HTCSBCTTTCCBCCGGG
T ss_pred CCCCCCcHhcC-cEEcCCCCcccHHHHHHHHh--HCcCcCCCCCCCCCHhh
Confidence 34444444433 23344678888888766432 12356777777776443
Done!