RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10533
(594 letters)
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 120 bits (303), Expect = 9e-32
Identities = 34/193 (17%), Positives = 46/193 (23%), Gaps = 26/193 (13%)
Query: 156 IGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHMCHKC 215
++ +++H CF C C K L C C +
Sbjct: 19 FAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAG 78
Query: 216 HGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLRCHDKM 275
D H
Sbjct: 79 TLSTDKGESLGIKYEEGQSHRPTNPN-------------------------ASRMAQKVG 113
Query: 276 GIPICGACRRPI-EERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQL 334
G C C + + V GK WH F CA+C K +K G YC+ Y +
Sbjct: 114 GSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKN 173
Query: 335 FGNLCFVCNQVIG 347
FG F Q G
Sbjct: 174 FGPKGFGFGQGAG 186
Score = 117 bits (293), Expect = 2e-30
Identities = 39/190 (20%), Positives = 57/190 (30%), Gaps = 23/190 (12%)
Query: 278 PICGACRRPIEE-RVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 336
CG C++ + V G +H F+C C+K YC++ Y + +G
Sbjct: 8 KKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67
Query: 337 NLCFVCNQVIGGDESHYITSRELTY-------KKGLGYCESHYHQLFGNLCFVCNQ-VIG 388
G + S + Y + C C Q V
Sbjct: 68 PKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYA 127
Query: 389 GDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQL 448
+ GK WH F CA+C K +K G YC+ Y +
Sbjct: 128 AEKVIGA--------------GKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKN 173
Query: 449 FGNLCFVCNQ 458
FG F Q
Sbjct: 174 FGPKGFGFGQ 183
Score = 83.1 bits (205), Expect = 1e-18
Identities = 35/212 (16%), Positives = 55/212 (25%), Gaps = 34/212 (16%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
C C + E++ G +H+ CF+C C + YC+ + + P
Sbjct: 10 CGVCQKAVYFAEEVQ-CEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGP 68
Query: 68 CCGNGCPSLSTFAISLAGEISGWYPPCLKITMSLGNMYCFPLQRRFRARGEDRQTLTGGA 127
T ++ G + R +
Sbjct: 69 KGKGKGMGAGT------------------LSTDKGESLGIKYEEGQSHRPTNPNASRMAQ 110
Query: 128 WHQQCFVCAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFI 187
C +C + + +WH CFRC C K L
Sbjct: 111 KVGGSDGCPRCGQAVYA------------AEKVIGAGKSWHKSCFRCAKCGKSLESTTLA 158
Query: 188 RSQGRALCHECNAQ---AKAVGFGKHMCHKCH 216
G C C A+ K GFG+ H
Sbjct: 159 DKDGEIYCKGCYAKNFGPKGFGFGQGAGALIH 190
Score = 78.5 bits (193), Expect = 5e-17
Identities = 27/168 (16%), Positives = 45/168 (26%), Gaps = 12/168 (7%)
Query: 406 CSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQNHTISLH 465
G +H F+C C+K YC++ Y + +G +
Sbjct: 23 VQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGK----GKGMGAG 78
Query: 466 VSSREAVLSSDSSVFGLRHYEKKGLAYCETHYHQLFGNLCFVCNQDHTISRHVSSRESVL 525
S + S + + + C C Q + V
Sbjct: 79 TLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSW 138
Query: 526 SSD--------SSVFGLRHYEKNGLAYCETHYHQLFGNLCFVCNQVIG 565
S+ +K+G YC+ Y + FG F Q G
Sbjct: 139 HKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAG 186
Score = 59.6 bits (144), Expect = 2e-10
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 7 YCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFA 66
C RC + EK++ G+ WH+ CF CA+C + + +G YC+ + F
Sbjct: 117 GCPRCGQAVYAAEKVI-GAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG 175
Query: 67 PCCGN 71
P
Sbjct: 176 PKGFG 180
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 113 bits (285), Expect = 5e-30
Identities = 29/174 (16%), Positives = 49/174 (28%), Gaps = 52/174 (29%)
Query: 277 IPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLF 335
P C C I A ++WH++HF C C+ G + C+ Y +
Sbjct: 3 KPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH 62
Query: 336 GNLCFVCNQVIGGDESHYITSRELTYKKGLGYCESHYHQLFGNLCFVCNQVIGGDLFTAL 395
+C C+ I + T
Sbjct: 63 AVVCQGCHNAIDPEVQR---------------------------------------VTYN 83
Query: 396 NKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLF 449
N +W H E F+C+ C K +G + +G+ +C +
Sbjct: 84 NFSW------------HASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125
Score = 92.1 bits (229), Expect = 2e-22
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 14/129 (10%)
Query: 212 CHKCHGLIDDKP-LKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLR 270
C C LI + + +H HF C C + L + Y + ++ C
Sbjct: 6 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGE--------IYVMVN-DKPVCKP 56
Query: 271 CHDKMGIPICGACRRPIE--ERVVTALGKHWH--VEHFVCARCEKPFLGHRHYEKKGLAY 326
C+ K +C C I+ + VT WH E F+C+ C K +G + +G+ +
Sbjct: 57 CYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVF 116
Query: 327 CETHYHQLF 335
C +
Sbjct: 117 CSVECKKRM 125
Score = 78.2 bits (193), Expect = 1e-17
Identities = 17/139 (12%), Positives = 42/139 (30%), Gaps = 36/139 (25%)
Query: 380 CFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGLA 439
C C+++I + ++WH++HF C C+ G +
Sbjct: 6 CAGCDELIFSN-------------EYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKP 52
Query: 440 YCETHYHQLFGNLCFVCNQNHTISLHVSSREAVLSSDSSVF-----------------GL 482
C+ Y + +C C+ + ++ ++ + G
Sbjct: 53 VCKPCYVKNHAVVCQGCHN------AIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQ 106
Query: 483 RHYEKKGLAYCETHYHQLF 501
+ +G+ +C +
Sbjct: 107 KFMPVEGMVFCSVECKKRM 125
Score = 66.3 bits (162), Expect = 2e-13
Identities = 30/150 (20%), Positives = 45/150 (30%), Gaps = 41/150 (27%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
C+ C+E E + + WH + F C C G I+ + C+ + A
Sbjct: 6 CAGCDELIFSNE-YTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAV 64
Query: 68 CCGNGCPSLSTFAISLAGEISGWYPPCLKITMSLGNMYCFPLQRRFRARGEDRQTLTGGA 127
C GC AI P +R +
Sbjct: 65 VCQ-GC----HNAID-------------------------PEVQRVTYN--------NFS 86
Query: 128 WH--QQCFVCAQCFRPFPGGIFYEFEGEFV 155
WH +CF+C+ C + G F EG
Sbjct: 87 WHASTECFLCSCCSKCLIGQKFMPVEGMVF 116
Score = 60.5 bits (147), Expect = 2e-11
Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 18/123 (14%)
Query: 157 GRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHMCHKCH 216
+A N NWH K F C C LA ++ + +C C + AV +C CH
Sbjct: 16 NEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAV-----VCQGCH 70
Query: 217 GLI--DDKPLKFRGEVYHPY--HFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLRCH 272
I + + + + +H F C+ C L + + ++C
Sbjct: 71 NAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQ--------KFMPVE-GMVFCSVEC 121
Query: 273 DKM 275
K
Sbjct: 122 KKR 124
Score = 57.8 bits (140), Expect = 2e-10
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 7 YCSRCNEGFEPEEKIVNSNGELWH--QQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVL 64
C C+ +PE + V N WH +CF+C+ C + G F EG +C +
Sbjct: 65 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKR 124
Query: 65 FA 66
+
Sbjct: 125 MS 126
Score = 57.0 bits (138), Expect = 4e-10
Identities = 21/98 (21%), Positives = 30/98 (30%), Gaps = 24/98 (24%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGE-------------------FVIG---RVIKA 162
WH + F C C G I+ + I + +
Sbjct: 23 NQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTY 82
Query: 163 MNANWHP--KCFRCEHCSKELADLGFIRSQGRALCHEC 198
N +WH +CF C CSK L F+ +G C
Sbjct: 83 NNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVE 120
Score = 42.8 bits (101), Expect = 3e-05
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 533 GLRHYEKNGLAYCETHYHQLFGNLCFVCNQVIGGD 567
G + N C+ Y + +C C+ I +
Sbjct: 42 GEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPE 76
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 108 bits (270), Expect = 2e-27
Identities = 30/189 (15%), Positives = 53/189 (28%), Gaps = 57/189 (30%)
Query: 276 GIPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQL 334
IP+C C + I +R ++ AL +HWH + C+ C P L R + + YC+ + +
Sbjct: 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVP-LAERCFSRGESVYCKDDFFKR 63
Query: 335 FGNLCFVCNQVIGGDESHYITSRELTYKKGLGYCESHYHQLFGNLCFVCNQVIGGDLFTA 394
FG C C I + A
Sbjct: 64 FGTKCAACQLGIP---------------------------------------PTQVVRRA 84
Query: 395 LNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLG--HRHYEKKGLAYCETHYHQLFGNL 452
+ +H+ F C C++ + + C+ Y
Sbjct: 85 QDF--------------VYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGG 130
Query: 453 CFVCNQNHT 461
+
Sbjct: 131 SGGSGGSGG 139
Score = 91.4 bits (227), Expect = 1e-21
Identities = 32/181 (17%), Positives = 54/181 (29%), Gaps = 27/181 (14%)
Query: 134 VCAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRA 193
+CA C + ++KA++ +WH KC +C C LA+ F R
Sbjct: 8 MCAGCDQHILDR------------FILKALDRHWHSKCLKCSDCHVPLAERCFSRG-ESV 54
Query: 194 LCHECNAQAKAVGFGKHMCHKCHGLI--DDKPLKFRGEVYHPYHFNCTSCGTELNSDARE 251
C + + C C I + + VYH + F C C +L +
Sbjct: 55 YCKDDFFKRFGT-----KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE- 108
Query: 252 VKSRPGYTANDMNELYCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEK 311
+ + + L C ++ G + A H E
Sbjct: 109 ------FYLMEDSRLVCKADYETAKQGGSGGSGGSGGGTPMVAASPERHDGGLQANPVEV 162
Query: 312 P 312
Sbjct: 163 Q 163
Score = 84.9 bits (210), Expect = 2e-19
Identities = 33/204 (16%), Positives = 49/204 (24%), Gaps = 52/204 (25%)
Query: 211 MCHKCHGLIDDKP-LKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCL 269
MC C I D+ LK +H C+ C L YC
Sbjct: 8 MCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESV----------YCK 57
Query: 270 RCHDKMGIPICGACRRPIE--ERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYC 327
K C AC+ I + V A +H+ F C C++
Sbjct: 58 DDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQL-------------- 103
Query: 328 ETHYHQLFGNLCFVCNQVIGGDESHYITSRELTYKKGLGYCESHYHQLFGNLCFVCNQVI 387
GDE + + L C++ Y
Sbjct: 104 ------------------ATGDEFYLMEDSRL-------VCKADYETAKQGGSGGSGGSG 138
Query: 388 GGDLFTALNKAWCVHHFACSTLGK 411
GG A + + +
Sbjct: 139 GGTPMVAASPERHDGGLQANPVEV 162
Score = 82.2 bits (203), Expect = 2e-18
Identities = 33/195 (16%), Positives = 53/195 (27%), Gaps = 55/195 (28%)
Query: 378 NLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKG 437
+C C+Q I F L +HWH + C+ C P L R + +
Sbjct: 7 PMCAGCDQHILDR-------------FILKALDRHWHSKCLKCSDCHVP-LAERCFSRGE 52
Query: 438 LAYCETHYHQLFGNLCFVCNQNHTISLHVSSREAVLSSDSSVFGLRHYEKKGLAYCETHY 497
YC+ + + FG C C + V R A + Y +
Sbjct: 53 SVYCKDDFFKRFGTKCAACQLGIPPTQVV--RRA----------------QDFVYHLHCF 94
Query: 498 HQLFGNLCFVCNQDHTISRHVSSRESVLSSDSSVFGLRHYEKNGLAYCETHYHQLFGNLC 557
C VC + L++ + ++ C+ Y
Sbjct: 95 ------ACVVCKR-------------QLATGDEFY----LMEDSRLVCKADYETAKQGGS 131
Query: 558 FVCNQVIGGDPGTVK 572
GG P
Sbjct: 132 GGSGGSGGGTPMVAA 146
Score = 67.9 bits (166), Expect = 2e-13
Identities = 27/152 (17%), Positives = 40/152 (26%), Gaps = 32/152 (21%)
Query: 119 DRQTLT--GGAWHQQCFVCAQCFRPFPGGIFYEFEGEF---------------------- 154
DR L WH +C C+ C P +
Sbjct: 18 DRFILKALDRHWHSKCLKCSDCHVPL-AERCFSRGESVYCKDDFFKRFGTKCAACQLGIP 76
Query: 155 VIGRVIKAMNANWHPKCFRCEHCSKELA--DLGFIRSQGRALCHECNAQAKAVGFGKHMC 212
V +A + +H CF C C ++LA D ++ R +C AK G
Sbjct: 77 PTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGG-----S 131
Query: 213 HKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTE 244
G P+ H +
Sbjct: 132 GGSGGSGGGTPMVAASPERHDGGLQANPVEVQ 163
Score = 64.9 bits (158), Expect = 2e-12
Identities = 31/195 (15%), Positives = 49/195 (25%), Gaps = 62/195 (31%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
C+ C++ + I+ + WH +C C+ C P + YC+ DF F
Sbjct: 9 CAGCDQHIL-DRFILKALDRHWHSKCLKCSDCHVPL-AERCFSRGESVYCKDDFFKRFGT 66
Query: 68 CCGNGCPSLSTFAISLAGEISGWYPPCLKITMSLGNMYCFPLQRRFRARGEDRQTLTGGA 127
C C P Q RA+
Sbjct: 67 KCAA----------------------CQLGIP--------PTQVVRRAQDF--------V 88
Query: 128 WHQQCFVCAQCFRPFPGG--IFYEFEGEFV--------------------IGRVIKAMNA 165
+H CF C C R G + + V G + A +
Sbjct: 89 YHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGGSGGGTPMVAASP 148
Query: 166 NWHPKCFRCEHCSKE 180
H + +
Sbjct: 149 ERHDGGLQANPVEVQ 163
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 106 bits (267), Expect = 5e-27
Identities = 30/192 (15%), Positives = 55/192 (28%), Gaps = 57/192 (29%)
Query: 259 TANDMNELYCLRCHDKMGIPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPFLGHR 317
++ + IP+C C + I +R ++ AL +HWH + C+ C P L R
Sbjct: 42 IDDEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVP-LAER 100
Query: 318 HYEKKGLAYCETHYHQLFGNLCFVCNQVIGGDESHYITSRELTYKKGLGYCESHYHQLFG 377
+ + YC+ + + FG C C I
Sbjct: 101 CFSRGESVYCKDDFFKRFGTKCAACQLGI------------------------------- 129
Query: 378 NLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHY--EK 435
+ A + +H+ F C C++ + +
Sbjct: 130 --------PPTQVVRRAQDF--------------VYHLHCFACVVCKRQLATGDEFYLME 167
Query: 436 KGLAYCETHYHQ 447
C+ Y
Sbjct: 168 DSRLVCKADYET 179
Score = 82.7 bits (204), Expect = 2e-18
Identities = 29/170 (17%), Positives = 44/170 (25%), Gaps = 20/170 (11%)
Query: 169 PKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHMCHKCHGLIDDKP-LKFR 227
+ ++ A G G MC C I D+ LK
Sbjct: 25 ERLITRLENTQFDAANGIDDEGGSGGHMGSGGT-----PEIPMCAGCDQHILDRFILKAL 79
Query: 228 GEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLRCHDKMGIPICGACRRPI 287
+H C+ C L YC K C AC+ I
Sbjct: 80 DRHWHSKCLKCSDCHVPLAERCFSRGESV----------YCKDDFFKRFGTKCAACQLGI 129
Query: 288 E--ERVVTALGKHWHVEHFVCARCEKPFLGHRHY--EKKGLAYCETHYHQ 333
+ V A +H+ F C C++ + + C+ Y
Sbjct: 130 PPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 179
Score = 78.8 bits (194), Expect = 3e-17
Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 37/155 (23%)
Query: 362 KKGLGYCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCA 421
+ G G +C C+Q I F L +HWH + C+
Sbjct: 45 EGGSGGHMGSGGTPEIPMCAGCDQHILDR-------------FILKALDRHWHSKCLKCS 91
Query: 422 RCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQNHTISLHVSSREAVLSSDSSVFG 481
C P L R + + YC+ + + FG C C + + V + V+
Sbjct: 92 DCHVP-LAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPT------QVVRRAQDFVYH 144
Query: 482 LRHY-----------------EKKGLAYCETHYHQ 499
L + + C+ Y
Sbjct: 145 LHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 179
Score = 64.2 bits (156), Expect = 4e-12
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 15/119 (12%)
Query: 159 VIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHMCHKCHGL 218
++KA++ +WH KC +C C LA+ F R C + + FG C C
Sbjct: 75 ILKALDRHWHSKCLKCSDCHVPLAERCFSRG-ESVYCKDDFFKR----FGTK-CAACQLG 128
Query: 219 I--DDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLRCHDKM 275
I + + VYH + F C C +L + + + + L C ++
Sbjct: 129 IPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE-------FYLMEDSRLVCKADYETA 180
Score = 58.4 bits (141), Expect = 4e-10
Identities = 26/141 (18%), Positives = 40/141 (28%), Gaps = 40/141 (28%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
C+ C++ + I+ + WH +C C+ C P + YC+ DF F
Sbjct: 63 CAGCDQHIL-DRFILKALDRHWHSKCLKCSDCHVPL-AERCFSRGESVYCKDDFFKRFGT 120
Query: 68 CCGNGCPSLSTFAISLAGEISGWYPPCLKITMSLGNMYCFPLQRRFRARGEDRQTLTGGA 127
C C L + RA+
Sbjct: 121 KCA-AC--------QLGIPPTQVV---------------------RRAQ--------DFV 142
Query: 128 WHQQCFVCAQCFRPFPGGIFY 148
+H CF C C R G +
Sbjct: 143 YHLHCFACVVCKRQLATGDEF 163
Score = 53.8 bits (129), Expect = 1e-08
Identities = 27/194 (13%), Positives = 43/194 (22%), Gaps = 68/194 (35%)
Query: 31 QQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPCCGNGCPSLSTFAISLAGEISGW 90
++ + + + G P C GC
Sbjct: 25 ERLITRLENTQFDAANGIDDEGGSGGHMGSGGTPEIPMCA-GC----------------- 66
Query: 91 YPPCLKITMSLGNMYCFPLQRRFRARGEDRQTLT--GGAWHQQCFVCAQCFRPFPGGIFY 148
I DR L WH +C C+ C P +
Sbjct: 67 ---DQHIL--------------------DRFILKALDRHWHSKCLKCSDCHVPL-AERCF 102
Query: 149 EFEGEF----------------------VIGRVIKAMNANWHPKCFRCEHCSKELA--DL 184
V +A + +H CF C C ++LA D
Sbjct: 103 SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDE 162
Query: 185 GFIRSQGRALCHEC 198
++ R +C
Sbjct: 163 FYLMEDSRLVCKAD 176
Score = 50.3 bits (120), Expect = 2e-07
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGG--IFYEFEGRKYCEHDFH 62
C+ C G P + + + ++H CF C C R G + + R C+ D+
Sbjct: 122 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 178
Score = 46.8 bits (111), Expect = 3e-06
Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 19/105 (18%)
Query: 473 LSSDSSVFGLRHYEKKGLAYCETHYHQLFGNLCFVCNQDHTISRHVSSRESVLSSDSS-- 530
L + ++ G +C C+ +H+ R + + D
Sbjct: 31 LENTQFDAANGIDDEGGSGGHMGSGGTPEIPMCAGCD------QHILDRFILKALDRHWH 84
Query: 531 -----------VFGLRHYEKNGLAYCETHYHQLFGNLCFVCNQVI 564
R + + YC+ + + FG C C I
Sbjct: 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGI 129
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 103 bits (258), Expect = 5e-27
Identities = 25/73 (34%), Positives = 33/73 (45%)
Query: 267 YCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAY 326
+ M P CG C RP+ E ++A+ WH E FVC C F +E G +
Sbjct: 5 SSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPF 64
Query: 327 CETHYHQLFGNLC 339
CE HYH G+
Sbjct: 65 CELHYHHRRGSGP 77
Score = 89.7 bits (223), Expect = 3e-22
Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 14/90 (15%)
Query: 364 GLGYCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARC 423
G + +F C CN+ + + +A+ WH E FVC C
Sbjct: 2 SSGSSGKDFLAMFSPKCGGCNRPVLENYLSAM--------------DTVWHPECFVCGDC 47
Query: 424 EKPFLGHRHYEKKGLAYCETHYHQLFGNLC 453
F +E G +CE HYH G+
Sbjct: 48 FTSFSTGSFFELDGRPFCELHYHHRRGSGP 77
Score = 65.4 bits (160), Expect = 1e-13
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
C CN E +++ +WH +CFVC CF F G F+E +GR +CE +H
Sbjct: 18 CGGCNRPVL--ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGS 75
Query: 68 CCGNG 72
+G
Sbjct: 76 GPSSG 80
Score = 53.9 bits (130), Expect = 2e-09
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 152 GEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHEC 198
V+ + AM+ WHP+CF C C + F GR C
Sbjct: 22 NRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELH 68
Score = 45.8 bits (109), Expect = 9e-07
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 489 GLAYCETHYHQLFGNLCFVCNQDHTISRHVSSRESV--------LSSDSSVFGLRHYEKN 540
+ +F C CN+ + ++S+ ++V +S +E +
Sbjct: 2 SSGSSGKDFLAMFSPKCGGCNR-PVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELD 60
Query: 541 GLAYCETHYHQLFGNLC 557
G +CE HYH G+
Sbjct: 61 GRPFCELHYHHRRGSGP 77
Score = 42.7 bits (101), Expect = 1e-05
Identities = 22/100 (22%), Positives = 29/100 (29%), Gaps = 40/100 (40%)
Query: 53 GRKYCEHDFHVLFAPCCGNGCPSLSTFAISLAGEISGWYPPCLKITMSLGNMYCFPLQRR 112
DF +F+P CG GC + Y +
Sbjct: 2 SSGSSGKDFLAMFSPKCG-GC----------NRPVLENYLSAM----------------- 33
Query: 113 FRARGEDRQTLTGGAWHQQCFVCAQCFRPFPGGIFYEFEG 152
WH +CFVC CF F G F+E +G
Sbjct: 34 ------------DTVWHPECFVCGDCFTSFSTGSFFELDG 61
Score = 39.2 bits (92), Expect = 2e-04
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 9/72 (12%)
Query: 211 MCHKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLR 270
C C+ + + L V+HP F C C T ++ + D +C
Sbjct: 17 KCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTG--------SFFELD-GRPFCEL 67
Query: 271 CHDKMGIPICGA 282
+ +
Sbjct: 68 HYHHRRGSGPSS 79
Score = 32.7 bits (75), Expect = 0.048
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 541 GLAYCETHYHQLFGNLCFVCNQVIGG 566
+ +F C CN+ +
Sbjct: 2 SSGSSGKDFLAMFSPKCGGCNRPVLE 27
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 101 bits (253), Expect = 3e-26
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 264 NELYCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKG 323
+ C++ P C C + + + VT + WH E VC C+ P G + +
Sbjct: 2 SSGSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDE 61
Query: 324 LAYCETHYHQLFGNLC 339
YC + +LF +
Sbjct: 62 DPYCVACFGELFASGP 77
Score = 83.1 bits (206), Expect = 7e-20
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 14/88 (15%)
Query: 366 GYCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEK 425
G Y F C C++ + T + WH E VC C+
Sbjct: 4 GSSGPCYENKFAPRCARCSKTLTQGGVTYR--------------DQPWHRECLVCTGCQT 49
Query: 426 PFLGHRHYEKKGLAYCETHYHQLFGNLC 453
P G + + YC + +LF +
Sbjct: 50 PLAGQQFTSRDEDPYCVACFGELFASGP 77
Score = 60.8 bits (148), Expect = 6e-12
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
C+RC++ + V + WH++C VC C P G F + YC F LFA
Sbjct: 18 CARCSKTLT--QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAS 75
Query: 68 CCGNG 72
+G
Sbjct: 76 GPSSG 80
Score = 49.6 bits (119), Expect = 5e-08
Identities = 10/47 (21%), Positives = 15/47 (31%)
Query: 152 GEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHEC 198
+ + + + WH +C C C LA F C C
Sbjct: 22 SKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVAC 68
Score = 41.2 bits (97), Expect = 4e-05
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 212 CHKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLRC 271
C +C + + +R + +H CT C T L +T+ D + YC+ C
Sbjct: 18 CARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQ--------QFTSRD-EDPYCVAC 68
Query: 272 HDKMGIPICGA 282
++ +
Sbjct: 69 FGELFASGPSS 79
Score = 37.7 bits (88), Expect = 6e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
WH++C VC C P G F + +
Sbjct: 34 DQPWHRECLVCTGCQTPLAGQQFTSRDED 62
Score = 36.9 bits (86), Expect = 0.001
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 492 YCETHYHQLFGNLCFVCNQDHTISRHVSSRESV--------LSSDSSVFGLRHYEKNGLA 543
Y F C C++ V+ R+ + + G + ++
Sbjct: 5 SSGPCYENKFAPRCARCSKT-LTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDP 63
Query: 544 YCETHYHQLFGNLC 557
YC + +LF +
Sbjct: 64 YCVACFGELFASGP 77
Score = 29.6 bits (67), Expect = 0.59
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 544 YCETHYHQLFGNLCFVCNQVIGGD 567
Y F C C++ +
Sbjct: 5 SSGPCYENKFAPRCARCSKTLTQG 28
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 98.9 bits (247), Expect = 1e-25
Identities = 54/64 (84%), Positives = 61/64 (95%)
Query: 275 MGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQL 334
MG+PICGACRRPIE RVV A+GK WHVEHFVCA+CEKPFLGHRHYE+KGLAYCETHY+QL
Sbjct: 3 MGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQL 62
Query: 335 FGNL 338
FG++
Sbjct: 63 FGDV 66
Score = 78.5 bits (194), Expect = 2e-18
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 14/78 (17%)
Query: 375 LFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYE 434
+ +C C + I G + A+ GK WHVEHFVCA+CEKPFLGHRHYE
Sbjct: 3 MGVPICGACRRPIEGRVVNAM--------------GKQWHVEHFVCAKCEKPFLGHRHYE 48
Query: 435 KKGLAYCETHYHQLFGNL 452
+KGLAYCETHY+QLFG++
Sbjct: 49 RKGLAYCETHYNQLFGDV 66
Score = 62.7 bits (153), Expect = 9e-13
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 GNMY---CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHD 60
G+M C C E ++VN+ G+ WH + FVCA+C +PF G YE +G YCE
Sbjct: 1 GSMGVPICGACRR--PIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETH 58
Query: 61 FHVLFAP 67
++ LF
Sbjct: 59 YNQLFGD 65
Score = 54.2 bits (131), Expect = 8e-10
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 152 GEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHEC 198
+ GRV+ AM WH + F C C K +G A C
Sbjct: 12 RRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETH 58
Score = 41.5 bits (98), Expect = 3e-05
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 211 MCHKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLR 270
+C C I+ + + G+ +H HF C C + YC
Sbjct: 7 ICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGH--------RHYERK-GLAYCET 57
Query: 271 CHDKM 275
++++
Sbjct: 58 HYNQL 62
Score = 39.6 bits (93), Expect = 1e-04
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEG 152
G WH + FVCA+C +PF G YE +G
Sbjct: 24 GKQWHVEHFVCAKCEKPFLGHRHYERKG 51
Score = 37.7 bits (88), Expect = 5e-04
Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 533 GLRHYEKNGLAYCETHYHQLFGNL 556
G RHYE+ GLAYCETHY+QLFG++
Sbjct: 43 GHRHYERKGLAYCETHYNQLFGDV 66
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 99.4 bits (248), Expect = 2e-25
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 264 NELYCLRCHDKMGIPICGACRRPIE--ERVVTALGKHWHVEHFVCARCEKPFLGHRHYEK 321
+ +C + P C C + I ++ V G WH + F C+ C++ + K
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPK 61
Query: 322 KGLAYCETHYHQLFGNLC 339
YC T + F +
Sbjct: 62 GEDFYCVTCHETKFASGP 79
Score = 74.7 bits (184), Expect = 7e-17
Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 12/90 (13%)
Query: 364 GLGYCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARC 423
G + C C + I G WH + F C+ C
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFKAIVAG------------DQNVEYKGTVWHKDCFTCSNC 49
Query: 424 EKPFLGHRHYEKKGLAYCETHYHQLFGNLC 453
++ + K YC T + F +
Sbjct: 50 KQVIGTGSFFPKGEDFYCVTCHETKFASGP 79
Score = 72.4 bits (178), Expect = 5e-16
Identities = 17/65 (26%), Positives = 26/65 (40%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
C C + ++ V G +WH+ CF C+ C + G F+ YC FA
Sbjct: 18 CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAS 77
Query: 68 CCGNG 72
+G
Sbjct: 78 GPSSG 82
Score = 47.4 bits (113), Expect = 3e-07
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 11/64 (17%)
Query: 135 CAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRAL 194
C CF+ G + ++ WH CF C +C + + F
Sbjct: 18 CKGCFKAIVAG-----------DQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFY 66
Query: 195 CHEC 198
C C
Sbjct: 67 CVTC 70
Score = 40.4 bits (95), Expect = 9e-05
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
G WH+ CF C+ C + G F+ +
Sbjct: 36 GTVWHKDCFTCSNCKQVIGTGSFFPKGED 64
Score = 38.1 bits (89), Expect = 6e-04
Identities = 8/84 (9%), Positives = 19/84 (22%), Gaps = 21/84 (25%)
Query: 489 GLAYCETHYHQLFGNLCFVCNQDHTISRHVSSRESVLSSDSSVF---------------G 533
+ C C + + + + + +V+
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFK------AIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGT 55
Query: 534 LRHYEKNGLAYCETHYHQLFGNLC 557
+ K YC T + F +
Sbjct: 56 GSFFPKGEDFYCVTCHETKFASGP 79
Score = 35.4 bits (82), Expect = 0.005
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 16/94 (17%)
Query: 191 GRALCHECNAQAKAVGFGKHMCHKCHGLI--DDKPLKFRGEVYHPYHFNCTSCGTELNSD 248
+C + C C I D+ ++++G V+H F C++C + +
Sbjct: 2 SSGSSGKCTTR-----EDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGT- 55
Query: 249 AREVKSRPGYTANDMNELYCLRCHDKMGIPICGA 282
+ + YC+ CH+ +
Sbjct: 56 -------GSFFPKG-EDFYCVTCHETKFASGPSS 81
Score = 26.6 bits (59), Expect = 7.1
Identities = 3/27 (11%), Positives = 5/27 (18%)
Query: 541 GLAYCETHYHQLFGNLCFVCNQVIGGD 567
+ C C + I
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFKAIVAG 28
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 93.3 bits (232), Expect = 2e-23
Identities = 23/70 (32%), Positives = 30/70 (42%)
Query: 270 RCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCET 329
P+C C + I + ALGK WH E F CA C+ E+KG YCE
Sbjct: 18 HIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCEL 77
Query: 330 HYHQLFGNLC 339
Y + F +
Sbjct: 78 CYEKFFASGP 87
Score = 81.7 bits (202), Expect = 3e-19
Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 15/93 (16%)
Query: 362 KKGLGYCESHYHQ-LFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVC 420
+ L H +C CNQVI G AL GK WH E F C
Sbjct: 9 QDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVAL--------------GKSWHPEEFNC 54
Query: 421 ARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLC 453
A C+ E+KG YCE Y + F +
Sbjct: 55 AHCKNTMAYIGFVEEKGALYCELCYEKFFASGP 87
Score = 61.7 bits (150), Expect = 3e-12
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
C+ CN+ + + G+ WH + F CA C F E +G YCE + FA
Sbjct: 28 CAHCNQVIR--GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFAS 85
Query: 68 CCGNG 72
+G
Sbjct: 86 GPSSG 90
Score = 56.7 bits (137), Expect = 2e-10
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 152 GEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHEC 198
+ + G + A+ +WHP+ F C HC +A +GF+ +G C C
Sbjct: 32 NQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELC 78
Score = 45.1 bits (107), Expect = 2e-06
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 211 MCHKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLR 270
MC C+ +I L G+ +HP FNC C + G+ LYC
Sbjct: 27 MCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYI--------GFVEEK-GALYCEL 77
Query: 271 CHDKMGIPICGA 282
C++K +
Sbjct: 78 CYEKFFASGPSS 89
Score = 39.0 bits (91), Expect = 3e-04
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 10/82 (12%)
Query: 485 YEKKGLAYCETHYHQ-LFGNLCFVCNQDHTISRHVSSRESV--------LSSDSSVFGLR 535
++ L H +C CNQ + + +++ +
Sbjct: 7 GDQDTLVQRAEHIPAGKRTPMCAHCNQ-VIRGPFLVALGKSWHPEEFNCAHCKNTMAYIG 65
Query: 536 HYEKNGLAYCETHYHQLFGNLC 557
E+ G YCE Y + F +
Sbjct: 66 FVEEKGALYCELCYEKFFASGP 87
Score = 38.2 bits (89), Expect = 7e-04
Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 24/89 (26%)
Query: 433 YEKKGLAYCETHYHQ-LFGNLCFVCNQNHTISLHVSSREAVLSSDSSVF----------- 480
++ L H +C CNQ I R L + +
Sbjct: 7 GDQDTLVQRAEHIPAGKRTPMCAHCNQ--VI------RGPFLVALGKSWHPEEFNCAHCK 58
Query: 481 ----GLRHYEKKGLAYCETHYHQLFGNLC 505
+ E+KG YCE Y + F +
Sbjct: 59 NTMAYIGFVEEKGALYCELCYEKFFASGP 87
Score = 36.6 bits (85), Expect = 0.002
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
G +WH + F CA C F E +G
Sbjct: 44 GKSWHPEEFNCAHCKNTMAYIGFVEEKGA 72
Score = 29.3 bits (66), Expect = 0.72
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 537 YEKNGLAYCETHYHQ-LFGNLCFVCNQVIGG 566
+++ L H +C CNQVI G
Sbjct: 7 GDQDTLVQRAEHIPAGKRTPMCAHCNQVIRG 37
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 90.5 bits (225), Expect = 2e-22
Identities = 49/68 (72%), Positives = 56/68 (82%)
Query: 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDF 61
+L + C RC GF P EKIVNSNGEL+H+QCFVCAQCF+ FP G+FYEFEGRKYCEHDF
Sbjct: 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDF 67
Query: 62 HVLFAPCC 69
+LFAPC
Sbjct: 68 QMLFAPCW 75
Score = 82.8 bits (205), Expect = 9e-20
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 268 CLRCHDKMGIPICGACRRPIE--ERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLA 325
+ + C C+ E++V + G+ +H + FVCA+C + F YE +G
Sbjct: 2 SEFMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRK 61
Query: 326 YCETHYHQLFG 336
YCE + LF
Sbjct: 62 YCEHDFQMLFA 72
Score = 68.2 bits (167), Expect = 1e-14
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 368 CESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPF 427
E + L C C ++ G+ +H + FVCA+C + F
Sbjct: 2 SEFMANALASATCERCKGGFAPA------------EKIVNSNGELYHEQCFVCAQCFQQF 49
Query: 428 LGHRHYEKKGLAYCETHYHQLFG 450
YE +G YCE + LF
Sbjct: 50 PEGLFYEFEGRKYCEHDFQMLFA 72
Score = 50.1 bits (120), Expect = 3e-08
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 11/65 (16%)
Query: 134 VCAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRA 193
C +C F +++ + +H +CF C C ++ + F +GR
Sbjct: 13 TCERCKGGFAPA-----------EKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRK 61
Query: 194 LCHEC 198
C
Sbjct: 62 YCEHD 66
Score = 43.9 bits (104), Expect = 4e-06
Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGEF 154
G +H+QCFVCAQCF+ FP G+FYEFEG
Sbjct: 32 GELYHEQCFVCAQCFQQFPEGLFYEFEGRK 61
Score = 35.8 bits (83), Expect = 0.003
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 21/77 (27%)
Query: 493 CETHYHQLFGNLCFVCNQDHTISRHVSSRESVLSSDSSVF---------------GLRHY 537
E + L C C + E +++S+ ++ Y
Sbjct: 2 SEFMANALASATCERCKGG------FAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFY 55
Query: 538 EKNGLAYCETHYHQLFG 554
E G YCE + LF
Sbjct: 56 EFEGRKYCEHDFQMLFA 72
Score = 32.8 bits (75), Expect = 0.042
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 11/72 (15%)
Query: 206 GFGKHMCHKCHGLI--DDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDM 263
C +C G +K + GE+YH F C C + + +
Sbjct: 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG--------LFYEFE- 58
Query: 264 NELYCLRCHDKM 275
YC +
Sbjct: 59 GRKYCEHDFQML 70
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 92.1 bits (229), Expect = 2e-22
Identities = 38/178 (21%), Positives = 58/178 (32%), Gaps = 59/178 (33%)
Query: 277 IPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPF--LGHRHYEKKGLAYCETHYHQ 333
+ CG C++ I +R + A+ ++WH + C C +G R Y K G C Y +
Sbjct: 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 61
Query: 334 LFG--NLCFVCNQVIGGDESHYITSRELTYKKGLGYCESHYHQLFGNLCFVCNQVIGGDL 391
LFG LC C++ I E
Sbjct: 62 LFGQDGLCASCDKRIRAYEM---------------------------------------T 82
Query: 392 FTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFL-GHRHYEKKGLAYCETHYHQL 448
+K + H+E F CA C+K F G R+ CE ++
Sbjct: 83 MRVKDKVY--------------HLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEW 126
Score = 78.6 bits (194), Expect = 1e-17
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Query: 212 CHKCHGLIDDKP-LKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLR 270
C C I D+ LK + +H +C CG L R + + G C R
Sbjct: 5 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLG-------RKLCRR 57
Query: 271 CHDKMGIP--ICGACRRPIE--ERVVTALGKHWHVEHFVCARCEKPFL-GHRHYEKKGLA 325
+ ++ +C +C + I E + K +H+E F CA C+K F G R+
Sbjct: 58 DYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 117
Query: 326 YCETHYHQL 334
CE ++
Sbjct: 118 VCEQDIYEW 126
Score = 64.8 bits (158), Expect = 7e-13
Identities = 27/142 (19%), Positives = 42/142 (29%), Gaps = 39/142 (27%)
Query: 379 LCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPF--LGHRHYEKK 436
C C Q IG + + ++WH + C C +G R Y K
Sbjct: 4 TCGGCQQNIGDR-------------YFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKL 50
Query: 437 GLAYCETHYHQLFG--NLCFVCNQNHTISLHVSSREAVLSSDSSVFGLRH---------- 484
G C Y +LFG LC C++ + + E + V+ L
Sbjct: 51 GRKLCRRDYLRLFGQDGLCASCDK------RIRAYEMTMRVKDKVYHLECFKCAACQKHF 104
Query: 485 ------YEKKGLAYCETHYHQL 500
CE ++
Sbjct: 105 CVGDRYLLINSDIVCEQDIYEW 126
Score = 63.2 bits (154), Expect = 3e-12
Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 17/122 (13%)
Query: 159 VIKAMNANWHPKCFRCEHCSKELADLG--FIRSQGRALCHECNAQAKAVGFG-KHMCHKC 215
+KA++ WH C C+ C L ++G GR LC + FG +C C
Sbjct: 17 FLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRL----FGQDGLCASC 72
Query: 216 HGLI--DDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLRCHD 273
I + ++ + +VYH F C +C R Y + +++ C +
Sbjct: 73 DKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDR-------YLLIN-SDIVCEQDIY 124
Query: 274 KM 275
+
Sbjct: 125 EW 126
Score = 57.8 bits (140), Expect = 2e-10
Identities = 27/152 (17%), Positives = 43/152 (28%), Gaps = 42/152 (27%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFP--GGIFYEFEGRKYCEHDFHVLF 65
C C + + + + + WH+ C C C G Y GRK C D+ LF
Sbjct: 5 CGGCQQNIG-DRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLF 63
Query: 66 APCCG-NGCPSLSTFAISLAGEISGWYPPCLKITMSLGNMYCFPLQRRFRARGEDRQTLT 124
C + + R + +
Sbjct: 64 GQDGLCASC-----------------------------DKRIRAYEMTMRVKDK------ 88
Query: 125 GGAWHQQCFVCAQCFRPF-PGGIFYEFEGEFV 155
+H +CF CA C + F G + + V
Sbjct: 89 --VYHLECFKCAACQKHFCVGDRYLLINSDIV 118
Score = 55.9 bits (135), Expect = 9e-10
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPF-PGGIFYEFEGRKYCEHDFH 62
C+ C++ E + +++H +CF CA C + F G + CE D +
Sbjct: 69 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 124
Score = 47.4 bits (113), Expect = 9e-07
Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 29/109 (26%)
Query: 119 DRQTLT--GGAWHQQCFVCAQCFRPFP--GGIFYEFEGE--------------------- 153
DR L WH+ C C C G Y G
Sbjct: 14 DRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCD 73
Query: 154 FVIG---RVIKAMNANWHPKCFRCEHCSKELAD-LGFIRSQGRALCHEC 198
I ++ + +H +CF+C C K ++ +C +
Sbjct: 74 KRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 122
Score = 39.7 bits (93), Expect = 4e-04
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 533 GLRHYEKNGLAYCETHYHQLFG--NLCFVCNQVIGGD 567
G R Y K G C Y +LFG LC C++ I
Sbjct: 43 GRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 79
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 89.1 bits (221), Expect = 6e-22
Identities = 21/64 (32%), Positives = 27/64 (42%)
Query: 276 GIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLF 335
+P+C C I VV A K+ H E FVCA C ++ +G YCETH
Sbjct: 24 RMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARART 83
Query: 336 GNLC 339
Sbjct: 84 SGPS 87
Score = 69.1 bits (169), Expect = 9e-15
Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 14/75 (18%)
Query: 379 LCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGL 438
LC C I G + A K+ H E FVCA C ++ +G
Sbjct: 27 LCDKCGSGIVGAVVKAR--------------DKYRHPECFVCADCNLNLKQKGYFFVEGE 72
Query: 439 AYCETHYHQLFGNLC 453
YCETH
Sbjct: 73 LYCETHARARTSGPS 87
Score = 62.9 bits (153), Expect = 1e-12
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
C +C G +V + + H +CFVCA C ++ EG YCE +
Sbjct: 28 CDKCGSGIV--GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSG 85
Query: 68 CC 69
Sbjct: 86 PS 87
Score = 57.1 bits (138), Expect = 1e-10
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 152 GEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHEC 198
G ++G V+KA + HP+CF C C+ L G+ +G C
Sbjct: 32 GSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETH 78
Score = 40.2 bits (94), Expect = 1e-04
Identities = 18/73 (24%), Positives = 22/73 (30%), Gaps = 9/73 (12%)
Query: 210 HMCHKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCL 269
+C KC I +K R + HP F C C L GY + ELYC
Sbjct: 26 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQK--------GYFFVE-GELYCE 76
Query: 270 RCHDKMGIPICGA 282
Sbjct: 77 THARARTSGPSSG 89
Score = 39.4 bits (92), Expect = 2e-04
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGEF 154
H +CFVCA C ++ EGE
Sbjct: 44 DKYRHPECFVCADCNLNLKQKGYFFVEGEL 73
Score = 36.3 bits (84), Expect = 0.003
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 533 GLRHYEKNGLAYCETHYHQLFGNLC 557
++ G YCETH
Sbjct: 63 QKGYFFVEGELYCETHARARTSGPS 87
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 88.3 bits (219), Expect = 1e-21
Identities = 16/65 (24%), Positives = 23/65 (35%)
Query: 275 MGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQL 334
+P+C C I V +H H E +VC C H+ + YCE H +
Sbjct: 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARER 72
Query: 335 FGNLC 339
Sbjct: 73 VSGPS 77
Score = 65.9 bits (161), Expect = 7e-14
Identities = 15/78 (19%), Positives = 21/78 (26%), Gaps = 14/78 (17%)
Query: 376 FGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEK 435
+C C I G +H H E +VC C H+
Sbjct: 14 KLPMCDKCGTGIVGV--------------FVKLRDRHRHPECYVCTDCGTNLKQKGHFFV 59
Query: 436 KGLAYCETHYHQLFGNLC 453
+ YCE H +
Sbjct: 60 EDQIYCEKHARERVSGPS 77
Score = 62.1 bits (151), Expect = 2e-12
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
C +C G V H +C+VC C + E + YCE +
Sbjct: 18 CDKCGTGIV--GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSG 75
Query: 68 CC 69
Sbjct: 76 PS 77
Score = 53.2 bits (128), Expect = 2e-09
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 152 GEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHEC 198
G ++G +K + + HP+C+ C C L G + + C +
Sbjct: 22 GTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKH 68
Score = 40.9 bits (96), Expect = 5e-05
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 210 HMCHKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCL 269
MC KC I +K R HP + CT CGT L G+ + +++YC
Sbjct: 16 PMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQK--------GHFFVE-DQIYCE 66
Query: 270 RCHDKMGIPICGA 282
+ +
Sbjct: 67 KHARERVSGPSSG 79
Score = 38.2 bits (89), Expect = 6e-04
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGEF 154
H +C+VC C + E +
Sbjct: 34 DRHRHPECYVCTDCGTNLKQKGHFFVEDQI 63
Score = 34.3 bits (79), Expect = 0.013
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 533 GLRHYEKNGLAYCETHYHQLFGNLC 557
H+ YCE H +
Sbjct: 53 QKGHFFVEDQIYCEKHARERVSGPS 77
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 89.7 bits (222), Expect = 8e-21
Identities = 38/232 (16%), Positives = 65/232 (28%), Gaps = 61/232 (26%)
Query: 275 MGIPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPF--LGHRHYEKKGLAYCETHY 331
+ C C I +R ++ A+ +WH C+ C+ +G Y K G+ C Y
Sbjct: 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY 62
Query: 332 HQLFGN--LCFVCNQVIGGDESHYITSRELTYKKGLGYCESHYHQLFGNLCFVCNQVIGG 389
+LFGN C C Q I E
Sbjct: 63 IRLFGNSGACSACGQSIPASEL-------------------------------------- 84
Query: 390 DLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPF-LGHRHYEKKGLAYCETHYHQL 448
+ A + H++ F C+ C G R + G +CE
Sbjct: 85 -VMRAQGNVY--------------HLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTA 129
Query: 449 FGNLCFVCNQNHTISLHVSSREAVLSSDSSVFGLRHYEKKGLAYCETHYHQL 500
N + S + ++ + ++ G ++ Q
Sbjct: 130 LINGHLNSGG--SGGSGGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQF 179
Score = 87.4 bits (216), Expect = 4e-20
Identities = 33/146 (22%), Positives = 51/146 (34%), Gaps = 13/146 (8%)
Query: 212 CHKCHGLIDDKP-LKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLR 270
C C G I D+ L +H C+SC +L ++ G + C
Sbjct: 8 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSG-------MILCRN 60
Query: 271 CHDKMGI--PICGACRRPIE--ERVVTALGKHWHVEHFVCARCEKPF-LGHRHYEKKGLA 325
+ ++ C AC + I E V+ A G +H++ F C+ C G R + G
Sbjct: 61 DYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSL 120
Query: 326 YCETHYHQLFGNLCFVCNQVIGGDES 351
+CE N G S
Sbjct: 121 FCEHDRPTALINGHLNSGGSGGSGGS 146
Score = 70.8 bits (173), Expect = 2e-14
Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 16/159 (10%)
Query: 159 VIKAMNANWHPKCFRCEHCSKELADLG--FIRSQGRALCHECNAQAKAVGFGKHMCHKCH 216
++ AM++ WH +C +C C +L D+G G LC + C C
Sbjct: 20 LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN---SGACSACG 76
Query: 217 GLI--DDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLRCHDK 274
I + ++ +G VYH F C++C L R + + L+C
Sbjct: 77 QSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDR-------FHYIN-GSLFCEHDRPT 128
Query: 275 MGIPICGACRRPIE-ERVVTALGKHWHVEHFVCARCEKP 312
I + ++
Sbjct: 129 ALINGHLNSGGSGGSGGSGGDVMVVGEPTLMGGEFGDED 167
Score = 65.0 bits (158), Expect = 2e-12
Identities = 30/166 (18%), Positives = 46/166 (27%), Gaps = 39/166 (23%)
Query: 375 LFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPF--LGHRH 432
L C C I F + +WH C+ C+ +G
Sbjct: 3 LSWKRCAGCGGKIADR-------------FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSS 49
Query: 433 YEKKGLAYCETHYHQLFGN--LCFVCNQNHTISLHVSSREAVLSSDSSVFGLRH------ 484
Y K G+ C Y +LFGN C C Q + + E V+ + +V+ L+
Sbjct: 50 YTKSGMILCRNDYIRLFGNSGACSACGQ------SIPASELVMRAQGNVYHLKCFTCSTC 103
Query: 485 ----------YEKKGLAYCETHYHQLFGNLCFVCNQDHTISRHVSS 520
+ G +CE N
Sbjct: 104 RNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGGSGGSGGSGGD 149
Score = 60.0 bits (145), Expect = 1e-10
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 7 YCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPF-PGGIFYEFEGRKYCEHDFHVLF 65
CS C + E ++ + G ++H +CF C+ C PG F+ G +CEHD
Sbjct: 71 ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTAL 130
Query: 66 APCCGNGCPS 75
N S
Sbjct: 131 INGHLNSGGS 140
Score = 53.1 bits (127), Expect = 3e-08
Identities = 29/158 (18%), Positives = 45/158 (28%), Gaps = 42/158 (26%)
Query: 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPF--PGGIFYEFEGRKYCEH 59
SL C+ C + ++ + WH +C C+ C G Y G C +
Sbjct: 2 SLSWKRCAGCGGKIA-DRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRN 60
Query: 60 DFHVLFAPCCG-NGCPSLSTFAISLAGEISGWYPPCLKITMSLGNMYCFPLQRRFRARGE 118
D+ LF + C + RA+
Sbjct: 61 DYIRLFGNSGACSAC-----------------------------GQSIPASELVMRAQ-- 89
Query: 119 DRQTLTGGAWHQQCFVCAQCFRPF-PGGIFYEFEGEFV 155
G +H +CF C+ C PG F+ G
Sbjct: 90 ------GNVYHLKCFTCSTCRNRLVPGDRFHYINGSLF 121
Score = 32.3 bits (73), Expect = 0.28
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 533 GLRHYEKNGLAYCETHYHQLFGN--LCFVCNQVIGGD 567
G Y K+G+ C Y +LFGN C C Q I
Sbjct: 46 GTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 85.1 bits (211), Expect = 1e-20
Identities = 21/66 (31%), Positives = 28/66 (42%)
Query: 274 KMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQ 333
G C C++PI VT + WH E FVC C K G R + AYC +
Sbjct: 2 SSGSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCD 61
Query: 334 LFGNLC 339
L+ +
Sbjct: 62 LYASGP 67
Score = 70.1 bits (172), Expect = 2e-15
Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 14/78 (17%)
Query: 376 FGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEK 435
+ C C + I T + WH E FVC C K G R +
Sbjct: 4 GSSGCVQCKKPITTGGVTYR--------------EQPWHKECFVCTACRKQLSGQRFTAR 49
Query: 436 KGLAYCETHYHQLFGNLC 453
AYC + L+ +
Sbjct: 50 DDFAYCLNCFCDLYASGP 67
Score = 61.6 bits (150), Expect = 2e-12
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
C +C + V + WH++CFVC C + G F + YC + F L+A
Sbjct: 8 CVQCKKPIT--TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAS 65
Query: 68 CCGNG 72
+G
Sbjct: 66 GPSSG 70
Score = 52.0 bits (125), Expect = 6e-09
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 152 GEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHEC 198
+ + + WH +CF C C K+L+ F A C C
Sbjct: 12 KKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNC 58
Score = 43.1 bits (102), Expect = 7e-06
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 208 GKHMCHKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELY 267
G C +C I + +R + +H F CT+C +L+ +TA D + Y
Sbjct: 4 GSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQ--------RFTARD-DFAY 54
Query: 268 CLRCHDKMGIPICGA 282
CL C + +
Sbjct: 55 CLNCFCDLYASGPSS 69
Score = 36.6 bits (85), Expect = 0.001
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
WH++CFVC C + G F +
Sbjct: 24 EQPWHKECFVCTACRKQLSGQRFTARDDF 52
Score = 31.9 bits (73), Expect = 0.064
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 533 GLRHYEKNGLAYCETHYHQLFGNLC 557
G R ++ AYC + L+ +
Sbjct: 43 GQRFTARDDFAYCLNCFCDLYASGP 67
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 85.2 bits (211), Expect = 1e-20
Identities = 41/83 (49%), Positives = 54/83 (65%), Gaps = 10/83 (12%)
Query: 198 CNAQAKAVGFGKHMCHKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPG 257
++ KA G GK++C KCH +ID++PL F+ + YHP HFNC +CG EL +DARE+K
Sbjct: 4 GSSGEKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELK---- 59
Query: 258 YTANDMNELYCLRCHDKMGIPIC 280
ELYCL CHDKMG+
Sbjct: 60 ------GELYCLPCHDKMGVSGP 76
Score = 71.0 bits (174), Expect = 1e-15
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 268 CLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYC 327
+G IC C I+E+ + +H +HF CA C K L E KG YC
Sbjct: 6 SGEKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKE-LTADARELKGELYC 64
Query: 328 ETHYHQLF 335
+ ++
Sbjct: 65 LPCHDKMG 72
Score = 50.2 bits (120), Expect = 3e-08
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 15/71 (21%)
Query: 379 LCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGL 438
+C C+ +I N + HF CA C K L E KG
Sbjct: 17 ICQKCHAIIDEQPLIFKNDPYHPD--------------HFNCANCGKE-LTADARELKGE 61
Query: 439 AYCETHYHQLF 449
YC + ++
Sbjct: 62 LYCLPCHDKMG 72
Score = 47.5 bits (113), Expect = 3e-07
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDF 61
LG C +C+ + E+ + + +H F CA C + E +G YC
Sbjct: 12 GLGKYICQKCHAIID--EQPLIFKNDPYHPDHFNCANCGKEL-TADARELKGELYCLPCH 68
Query: 62 HVLFAPCCGNG 72
+ +G
Sbjct: 69 DKMGVSGPSSG 79
Score = 44.4 bits (105), Expect = 3e-06
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 14/67 (20%)
Query: 132 CFVCAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQG 191
++C +C + + + N +HP F C +C KEL +G
Sbjct: 15 KYICQKCHAI-------------IDEQPLIFKNDPYHPDHFNCANCGKELTADAREL-KG 60
Query: 192 RALCHEC 198
C C
Sbjct: 61 ELYCLPC 67
Score = 28.6 bits (64), Expect = 1.1
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
+H F CA C + E +GE
Sbjct: 34 NDPYHPDHFNCANCGKEL-TADARELKGE 61
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat,
ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 84.4 bits (209), Expect = 2e-20
Identities = 46/59 (77%), Positives = 51/59 (86%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFA 66
C RC GF P EKIVNSNGEL+H+QCFVCAQCF+ FP G+FYEFEGRKYCEHDF +LFA
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72
Score = 76.7 bits (189), Expect = 1e-17
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 271 CHDKMGIPICGACRRPIE--ERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCE 328
C C+ E++V + G+ +H + FVCA+C + F YE +G YCE
Sbjct: 5 YFQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCE 64
Query: 329 THYHQLFG 336
+ LF
Sbjct: 65 HDFQMLFA 72
Score = 68.6 bits (168), Expect = 8e-15
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 12/80 (15%)
Query: 371 HYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGH 430
++ C C ++ G+ +H + FVCA+C + F
Sbjct: 5 YFQGSASATCERCKGGFAPA------------EKIVNSNGELYHEQCFVCAQCFQQFPEG 52
Query: 431 RHYEKKGLAYCETHYHQLFG 450
YE +G YCE + LF
Sbjct: 53 LFYEFEGRKYCEHDFQMLFA 72
Score = 49.3 bits (118), Expect = 4e-08
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 11/65 (16%)
Query: 134 VCAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRA 193
C +C F +++ + +H +CF C C ++ + F +GR
Sbjct: 13 TCERCKGGFAPA-----------EKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRK 61
Query: 194 LCHEC 198
C
Sbjct: 62 YCEHD 66
Score = 43.9 bits (104), Expect = 4e-06
Identities = 20/29 (68%), Positives = 24/29 (82%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
G +H+QCFVCAQCF+ FP G+FYEFEG
Sbjct: 32 GELYHEQCFVCAQCFQQFPEGLFYEFEGR 60
Score = 37.0 bits (86), Expect = 0.001
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 21/74 (28%)
Query: 496 HYHQLFGNLCFVCNQDHTISRHVSSRESVLSSDSSVF---------------GLRHYEKN 540
++ C C + E +++S+ ++ YE
Sbjct: 5 YFQGSASATCERCKGG------FAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFE 58
Query: 541 GLAYCETHYHQLFG 554
G YCE + LF
Sbjct: 59 GRKYCEHDFQMLFA 72
Score = 35.5 bits (82), Expect = 0.004
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 21/74 (28%)
Query: 444 HYHQLFGNLCFVCNQNHTISLHVSSREAVLSSDSSVF---------------GLRHYEKK 488
++ C C + E +++S+ ++ YE +
Sbjct: 5 YFQGSASATCERCKGG------FAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFE 58
Query: 489 GLAYCETHYHQLFG 502
G YCE + LF
Sbjct: 59 GRKYCEHDFQMLFA 72
Score = 32.8 bits (75), Expect = 0.036
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 11/72 (15%)
Query: 206 GFGKHMCHKCHGLI--DDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDM 263
G C +C G +K + GE+YH F C C + + +
Sbjct: 8 GSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG--------LFYEFE- 58
Query: 264 NELYCLRCHDKM 275
YC +
Sbjct: 59 GRKYCEHDFQML 70
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 80.9 bits (200), Expect = 3e-19
Identities = 17/66 (25%), Positives = 22/66 (33%)
Query: 274 KMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQ 333
G C C + I +T + WH + FVC C K G R + YC Y
Sbjct: 2 SSGSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKN 61
Query: 334 LFGNLC 339
Sbjct: 62 FVSGPS 67
Score = 65.1 bits (159), Expect = 1e-13
Identities = 17/78 (21%), Positives = 22/78 (28%), Gaps = 14/78 (17%)
Query: 376 FGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEK 435
+ C CN+ I T + WH + FVC C K G R
Sbjct: 4 GSSGCVKCNKAITSGGITYQ--------------DQPWHADCFVCVTCSKKLAGQRFTAV 49
Query: 436 KGLAYCETHYHQLFGNLC 453
+ YC Y
Sbjct: 50 EDQYYCVDCYKNFVSGPS 67
Score = 58.2 bits (141), Expect = 3e-11
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDF 61
S G+ C +CN+ + + WH CFVC C + G F E + YC +
Sbjct: 2 SSGSSGCVKCNKAIT--SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCY 59
Query: 62 HVLFAPCC 69
+
Sbjct: 60 KNFVSGPS 67
Score = 54.3 bits (131), Expect = 7e-10
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 152 GEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHM 211
+ + I + WH CF C CSK+LA F + + C +C + +
Sbjct: 12 NKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDC--------YKNFV 63
Query: 212 CHKCHG 217
G
Sbjct: 64 SGPSSG 69
Score = 40.8 bits (96), Expect = 4e-05
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 208 GKHMCHKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELY 267
G C KC+ I + ++ + +H F C +C +L +TA + ++ Y
Sbjct: 4 GSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQ--------RFTAVE-DQYY 54
Query: 268 CLRCHDKMGIPIC 280
C+ C+
Sbjct: 55 CVDCYKNFVSGPS 67
Score = 35.4 bits (82), Expect = 0.004
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEG 152
WH CFVC C + G F E
Sbjct: 24 DQPWHADCFVCVTCSKKLAGQRFTAVED 51
Score = 30.0 bits (68), Expect = 0.27
Identities = 5/25 (20%), Positives = 5/25 (20%)
Query: 533 GLRHYEKNGLAYCETHYHQLFGNLC 557
G R YC Y
Sbjct: 43 GQRFTAVEDQYYCVDCYKNFVSGPS 67
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 80.2 bits (198), Expect = 7e-19
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 264 NELYCLRCHDKMGIPICGACRRPIE-----ERVVTALGKHWHVEHFVCARCEKPFLGHRH 318
+ C+ C C+ PI VV G+ WH F C +C R
Sbjct: 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRF 61
Query: 319 YEKKGLAYCETHYHQL 334
+ YC +L
Sbjct: 62 VFHQEQVYCPDCAKKL 77
Score = 66.7 bits (163), Expect = 4e-14
Identities = 16/82 (19%), Positives = 22/82 (26%), Gaps = 9/82 (10%)
Query: 367 YCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKP 426
Y C C I G + V + G+ WH F C +C
Sbjct: 5 SSGDCYKNFVAKKCAGCKNPITGFGKGSS----VVAY-----EGQSWHDYCFHCKKCSVN 55
Query: 427 FLGHRHYEKKGLAYCETHYHQL 448
R + YC +L
Sbjct: 56 LANKRFVFHQEQVYCPDCAKKL 77
Score = 52.9 bits (127), Expect = 3e-09
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 135 CAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRAL 194
CA C P G V+ +WH CF C+ CS LA+ F+ Q +
Sbjct: 18 CAGCKNPITGFGKGS--------SVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVY 69
Query: 195 CHECNAQ 201
C +C +
Sbjct: 70 CPDCAKK 76
Score = 51.3 bits (123), Expect = 9e-09
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 7 YCSRCNE---GFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHV 63
C+ C GF +V G+ WH CF C +C F + + YC
Sbjct: 17 KCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76
Query: 64 L 64
L
Sbjct: 77 L 77
Score = 37.8 bits (88), Expect = 6e-04
Identities = 14/101 (13%), Positives = 22/101 (21%), Gaps = 35/101 (34%)
Query: 53 GRKYCEHDFHVLFAPCCGNGCPSLSTFAISLAGEISGWYPPCLKITMSLGNMYCFPLQRR 112
+ A C GC I+G+ +
Sbjct: 2 SSGSSGDCYKNFVAKKCA-GC----------KNPITGFGKGSSVVAYE------------ 38
Query: 113 FRARGEDRQTLTGGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
G +WH CF C +C F + +
Sbjct: 39 ------------GQSWHDYCFHCKKCSVNLANKRFVFHQEQ 67
Score = 34.8 bits (80), Expect = 0.007
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 14/69 (20%)
Query: 212 CHKCHGLI-----DDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNEL 266
C C I + + G+ +H Y F+C C L + + + ++
Sbjct: 18 CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANK--------RFVFHQ-EQV 68
Query: 267 YCLRCHDKM 275
YC C K+
Sbjct: 69 YCPDCAKKL 77
Score = 31.3 bits (71), Expect = 0.14
Identities = 9/75 (12%), Positives = 14/75 (18%), Gaps = 16/75 (21%)
Query: 440 YCETHYHQLFGNLCFVCNQNHTISLHVSSREAVLSSDS--------------SVFGLRHY 485
Y C C I+ V ++ R
Sbjct: 5 SSGDCYKNFVAKKCAGCKN--PITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFV 62
Query: 486 EKKGLAYCETHYHQL 500
+ YC +L
Sbjct: 63 FHQEQVYCPDCAKKL 77
Score = 28.6 bits (64), Expect = 1.3
Identities = 5/29 (17%), Positives = 5/29 (17%)
Query: 544 YCETHYHQLFGNLCFVCNQVIGGDPGTVK 572
Y C C I G
Sbjct: 5 SSGDCYKNFVAKKCAGCKNPITGFGKGSS 33
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 80.9 bits (200), Expect = 7e-19
Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 18/110 (16%)
Query: 276 GIPICGACRRPI--EERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQ 333
G C CR+PI + + V + WH F CA+C P K C +
Sbjct: 4 GSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTR 63
Query: 334 LFGNLCFVCNQVIGGDESHYITSRELTYKKGLGYCESHYHQLFGNLCFVC 383
C C + I + + + Y + +H+ CF
Sbjct: 64 EDSPKCKGCFKAIVAGD------------QNVEYKGTVWHK----DCFSG 97
Score = 75.5 bits (186), Expect = 5e-17
Identities = 23/131 (17%), Positives = 34/131 (25%), Gaps = 38/131 (29%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
C C + + K V+ WH CF CA+C P F + + C +P
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSP 67
Query: 68 CCGNGCPSLSTFAISLAGEISGWYPPCLKITMSLGNMYCFPLQRRFRARGEDRQTLTGGA 127
C C K + + + G
Sbjct: 68 KCKG----------------------CFKAIV--------AGDQNVEYK--------GTV 89
Query: 128 WHQQCFVCAQC 138
WH+ CF
Sbjct: 90 WHKDCFSGPSS 100
Score = 70.9 bits (174), Expect = 3e-15
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 212 CHKCHGLI--DDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCL 269
C +C I D K + ++ +H F C C L ++ + A D N++ C
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANE--------TFVAKD-NKILCN 58
Query: 270 RCHDKMGIPICGACRRPIE--ERVVTALGKHWHVEHFVCARC 309
+C + P C C + I ++ V G WH + F
Sbjct: 59 KCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
Score = 68.2 bits (167), Expect = 2e-14
Identities = 16/83 (19%), Positives = 22/83 (26%), Gaps = 12/83 (14%)
Query: 376 FGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEK 435
+ C C + IG D + WH F CA+C P K
Sbjct: 4 GSSGCVECRKPIGAD------------SKEVHYKNRFWHDTCFRCAKCLHPLANETFVAK 51
Query: 436 KGLAYCETHYHQLFGNLCFVCNQ 458
C + C C +
Sbjct: 52 DNKILCNKCTTREDSPKCKGCFK 74
Score = 67.4 bits (165), Expect = 4e-14
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 18/111 (16%)
Query: 134 VCAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRA 193
C +C +P + + N WH CFRC C LA+ F+ +
Sbjct: 7 GCVECRKPIGAD-----------SKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKI 55
Query: 194 LCHECNAQAKAVGFGKHMCHKCHGLI--DDKPLKFRGEVYHPYHFNCTSCG 242
LC++C + + C C I D+ ++++G V+H F+ S G
Sbjct: 56 LCNKCTTREDSP-----KCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101
Score = 54.3 bits (131), Expect = 2e-09
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 22/75 (29%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEG--------------------EFVIG--RVIKA 162
WH CF CA+C P F + + ++ + ++
Sbjct: 26 NRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNVEY 85
Query: 163 MNANWHPKCFRCEHC 177
WH CF
Sbjct: 86 KGTVWHKDCFSGPSS 100
Score = 37.0 bits (86), Expect = 0.002
Identities = 5/35 (14%), Positives = 8/35 (22%)
Query: 533 GLRHYEKNGLAYCETHYHQLFGNLCFVCNQVIGGD 567
K+ C + C C + I
Sbjct: 45 NETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAG 79
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 79.8 bits (197), Expect = 1e-18
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 270 RCHDKMGIPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCE 328
+ G C C+ I+ + AL K WHV F C C L + K G+ YCE
Sbjct: 8 KPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVI-LTGEYISKDGVPYCE 66
Query: 329 THYHQLFGNLC 339
+ YH FG+
Sbjct: 67 SDYHAQFGSGP 77
Score = 62.1 bits (151), Expect = 2e-12
Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 14/82 (17%)
Query: 372 YHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHR 431
+ C C + I H + L K WHV F C C L
Sbjct: 10 IKIRGPSHCAGCKEEI-------------KHGQSLLALDKQWHVSCFKCQTCSVI-LTGE 55
Query: 432 HYEKKGLAYCETHYHQLFGNLC 453
+ K G+ YCE+ YH FG+
Sbjct: 56 YISKDGVPYCESDYHAQFGSGP 77
Score = 53.6 bits (129), Expect = 2e-09
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
C+ C E + + + + + WH CF C C G + +G YCE D+H F
Sbjct: 18 CAGCKEEIKHGQ-SLLALDKQWHVSCFKCQTCSVIL-TGEYISKDGVPYCESDYHAQFGS 75
Query: 68 CCGNG 72
+G
Sbjct: 76 GPSSG 80
Score = 43.2 bits (102), Expect = 9e-06
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 157 GRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHEC 198
G+ + A++ WH CF+C+ CS L +I G C
Sbjct: 28 GQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESD 68
Score = 35.5 bits (82), Expect = 0.005
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 535 RHYEKNGLAYCETHYHQLFGNLC 557
+ K+G+ YCE+ YH FG+
Sbjct: 55 EYISKDGVPYCESDYHAQFGSGP 77
Score = 34.3 bits (79), Expect = 0.012
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 483 RHYEKKGLAYCETHYHQLFGNLC 505
+ K G+ YCE+ YH FG+
Sbjct: 55 EYISKDGVPYCESDYHAQFGSGP 77
Score = 31.3 bits (71), Expect = 0.14
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 119 DRQTLT--GGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
Q+L WH CF C C G + +G
Sbjct: 27 HGQSLLALDKQWHVSCFKCQTCSVIL-TGEYISKDGV 62
Score = 30.9 bits (70), Expect = 0.21
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 208 GKHMCHKCHGLIDDKP-LKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNEL 266
G C C I L + +H F C +C L + P Y +D +
Sbjct: 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVP-YCESDYHAQ 72
Query: 267 YCLRC 271
+
Sbjct: 73 FGSGP 77
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 81
Score = 79.7 bits (197), Expect = 1e-18
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 277 IPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHR-HYEKKGLAYCETHYHQLF 335
+ C C +PI +R++ A+GK +H F C C + G + +C +H+ F
Sbjct: 15 LEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKF 74
Query: 336 GNLC 339
+
Sbjct: 75 ASGP 78
Score = 65.9 bits (161), Expect = 9e-14
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 15/89 (16%)
Query: 366 GYCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEK 425
G + C C+Q I + A+ KA+ H F C C +
Sbjct: 4 GSSGEGCYVATLEKCATCSQPILDRILRAMGKAY--------------HPGCFTCVVCHR 49
Query: 426 PFLGHR-HYEKKGLAYCETHYHQLFGNLC 453
G + +C +H+ F +
Sbjct: 50 GLDGIPFTVDATSQIHCIEDFHRKFASGP 78
Score = 54.7 bits (132), Expect = 7e-10
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFY-EFEGRKYCEHDFHVLFA 66
C+ C++ ++I+ + G+ +H CF C C R G F + + +C DFH FA
Sbjct: 18 CATCSQPIL--DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA 75
Query: 67 PCCGNG 72
+G
Sbjct: 76 SGPSSG 81
Score = 53.1 bits (128), Expect = 3e-09
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 152 GEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRS-QGRALCHEC 198
+ ++ R+++AM +HP CF C C + L + F + C E
Sbjct: 22 SQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIED 69
Score = 44.3 bits (105), Expect = 4e-06
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 212 CHKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLRC 271
C C I D+ L+ G+ YHP F C C L+ +T + ++++C+
Sbjct: 18 CATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGI--------PFTVDATSQIHCIED 69
Query: 272 HDKMGIPICGA 282
+ +
Sbjct: 70 FHRKFASGPSS 80
Score = 32.0 bits (73), Expect = 0.089
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 536 HYEKNGLAYCETHYHQLFGNLC 557
+ +C +H+ F +
Sbjct: 57 TVDATSQIHCIEDFHRKFASGP 78
Score = 31.6 bits (72), Expect = 0.12
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFY 148
G A+H CF C C R G F
Sbjct: 34 GKAYHPGCFTCVVCHRGLDGIPFT 57
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 77.5 bits (191), Expect = 5e-18
Identities = 15/64 (23%), Positives = 24/64 (37%)
Query: 276 GIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLF 335
G C C I RV+ A+ WH E F C C++ + G C +++
Sbjct: 4 GSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREK 63
Query: 336 GNLC 339
+
Sbjct: 64 ASGP 67
Score = 62.8 bits (153), Expect = 7e-13
Identities = 33/55 (60%), Positives = 44/55 (80%)
Query: 152 GEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVG 206
GEF+IGRVIKAMN +WHP+CFRC+ C + LAD+GF+++ GR LC C+ + KA G
Sbjct: 12 GEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASG 66
Score = 60.1 bits (146), Expect = 6e-12
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 14/75 (18%)
Query: 379 LCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKGL 438
C C + I G + A+ WH E F C C++ + G
Sbjct: 7 GCHQCGEFIIGRVIKAM--------------NNSWHPECFRCDLCQEVLADIGFVKNAGR 52
Query: 439 AYCETHYHQLFGNLC 453
C +++ +
Sbjct: 53 HLCRPCHNREKASGP 67
Score = 59.7 bits (145), Expect = 9e-12
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
C +C E +++ + WH +CF C C F + GR C + A
Sbjct: 8 CHQCGEFII--GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAS 65
Query: 68 CCGNG 72
+G
Sbjct: 66 GPSSG 70
Score = 43.2 bits (102), Expect = 6e-06
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 208 GKHMCHKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELY 267
G CH+C I + +K +HP F C C L G+ N
Sbjct: 4 GSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADI--------GFVKNA-GRHL 54
Query: 268 CLRCHDKM--GIPICG 281
C CH++ P G
Sbjct: 55 CRPCHNREKASGPSSG 70
Score = 38.2 bits (89), Expect = 5e-04
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
+WH +CF C C F + G
Sbjct: 24 NNSWHPECFRCDLCQEVLADIGFVKNAGR 52
Score = 27.0 bits (60), Expect = 3.2
Identities = 2/25 (8%), Positives = 8/25 (32%)
Query: 533 GLRHYEKNGLAYCETHYHQLFGNLC 557
+ + G C +++ +
Sbjct: 43 DIGFVKNAGRHLCRPCHNREKASGP 67
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 77.5 bits (191), Expect = 6e-18
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 276 GIPICGACRRPI--EERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQ 333
G CG C + + V AL + +HV FVC+ C G Y + AYCE Y
Sbjct: 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVA 63
Query: 334 LFGNLCFVC 342
+
Sbjct: 64 TLES-GPSS 71
Score = 75.9 bits (187), Expect = 2e-17
Identities = 20/69 (28%), Positives = 27/69 (39%)
Query: 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDF 61
S G+ C C E + V + ++H CFVC+ C G FY E R YCE +
Sbjct: 2 SSGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCY 61
Query: 62 HVLFAPCCG 70
Sbjct: 62 VATLESGPS 70
Score = 63.6 bits (155), Expect = 5e-13
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 13/79 (16%)
Query: 378 NLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKG 437
+ C C + + GD L + +HV FVC+ C G Y +
Sbjct: 6 SGCGGCGEDVVGD------------GAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVER 53
Query: 438 LAYCETHYHQLFGNLCFVC 456
AYCE Y +
Sbjct: 54 RAYCEGCYVATLES-GPSS 71
Score = 49.7 bits (119), Expect = 3e-08
Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 11/65 (16%)
Query: 134 VCAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRA 193
C C G G + A++ +H CF C C +L F + RA
Sbjct: 7 GCGGCGEDVVGD-----------GAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRA 55
Query: 194 LCHEC 198
C C
Sbjct: 56 YCEGC 60
Score = 40.9 bits (96), Expect = 5e-05
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
+H CFVC+ C G FY E
Sbjct: 26 DRVFHVGCFVCSTCRAQLRGQHFYAVERR 54
Score = 34.7 bits (80), Expect = 0.006
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 12/78 (15%)
Query: 208 GKHMCHKCHGLI--DDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNE 265
G C C + D + V+H F C++C +L + A +
Sbjct: 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQ--------HFYAVE-RR 54
Query: 266 LYCLRCHDKMGIPICGAC 283
YC C+ + +
Sbjct: 55 AYCEGCYVAT-LESGPSS 71
Score = 30.9 bits (70), Expect = 0.18
Identities = 7/28 (25%), Positives = 8/28 (28%), Gaps = 1/28 (3%)
Query: 533 GLRHYEKNGLAYCETHYHQLFGNLCFVC 560
G Y AYCE Y +
Sbjct: 45 GQHFYAVERRAYCEGCYVATLES-GPSS 71
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 76.4 bits (188), Expect = 2e-17
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 264 NELYCLRCHDKMGIPICGACRRPI--EERVVTALGKHWHVEHFVCARCEKPFLGHRHYEK 321
+ C+D C C++ I + R + +H+H F C RC++ +
Sbjct: 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQ 61
Query: 322 KGLAYCETHYHQLFGNLC 339
C Y F +
Sbjct: 62 DSELLCNDCYCSAFSSGP 79
Score = 68.7 bits (168), Expect = 1e-14
Identities = 19/88 (21%), Positives = 26/88 (29%), Gaps = 12/88 (13%)
Query: 366 GYCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEK 425
G Y F N C C Q+IG D +H+H F C RC++
Sbjct: 4 GSSGPCYDNTFANTCAECQQLIGHD------------SRELFYEDRHFHEGCFRCCRCQR 51
Query: 426 PFLGHRHYEKKGLAYCETHYHQLFGNLC 453
+ C Y F +
Sbjct: 52 SLADEPFTCQDSELLCNDCYCSAFSSGP 79
Score = 62.1 bits (151), Expect = 2e-12
Identities = 12/66 (18%), Positives = 24/66 (36%)
Query: 7 YCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFA 66
C+ C + + + + +H+ CF C +C R F + C + F+
Sbjct: 17 TCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFS 76
Query: 67 PCCGNG 72
+G
Sbjct: 77 SGPSSG 82
Score = 46.3 bits (110), Expect = 8e-07
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 158 RVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHEC 198
R + + ++H CFRC C + LAD F LC++C
Sbjct: 30 RELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDC 70
Score = 37.1 bits (86), Expect = 0.001
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 11/73 (15%)
Query: 212 CHKCHGLI--DDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCL 269
C +C LI D + L + +H F C C L + + +EL C
Sbjct: 18 CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQD---------SELLCN 68
Query: 270 RCHDKMGIPICGA 282
C+ +
Sbjct: 69 DCYCSAFSSGPSS 81
Score = 34.8 bits (80), Expect = 0.008
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
+H+ CF C +C R F + E
Sbjct: 36 DRHFHEGCFRCCRCQRSLADEPFTCQDSE 64
Score = 29.8 bits (67), Expect = 0.56
Identities = 18/118 (15%), Positives = 29/118 (24%), Gaps = 43/118 (36%)
Query: 440 YCETHYHQLFGNLCFVCNQNHTISLHVSSREAVLSSDSSVFGLRHYEKKGLAYCETHYHQ 499
Y F N C C Q I ++ + L Y + H+H+
Sbjct: 5 SSGPCYDNTFANTCAECQQ--LIG---------------------HDSRELFYEDRHFHE 41
Query: 500 LFGNLCFVCNQDHTISRHVSSRESVLSSDSSVFGLRHYEKNGLAYCETHYHQLFGNLC 557
CF C + S+ ++ C Y F +
Sbjct: 42 ----GCFRCCRCQR----------------SLADEPFTCQDSELLCNDCYCSAFSSGP 79
Score = 29.4 bits (66), Expect = 0.62
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 544 YCETHYHQLFGNLCFVCNQVIGGD 567
Y F N C C Q+IG D
Sbjct: 5 SSGPCYDNTFANTCAECQQLIGHD 28
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 74.4 bits (183), Expect = 6e-17
Identities = 17/71 (23%), Positives = 30/71 (42%)
Query: 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDF 61
S G+ C C + P + + G WH+ CF+C +C +P F + + +C +
Sbjct: 2 SSGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCY 61
Query: 62 HVLFAPCCGNG 72
A +G
Sbjct: 62 EKQHASGPSSG 72
Score = 71.7 bits (176), Expect = 7e-16
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 276 GIPICGACRRPIE--ERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQ 333
G C C++ I R + G WH F+C RC++P K +C Y +
Sbjct: 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEK 63
Query: 334 LFGNLC 339
+
Sbjct: 64 QHASGP 69
Score = 58.2 bits (141), Expect = 4e-11
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 12/78 (15%)
Query: 376 FGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEK 435
+ C C + I G WH F+C RC++P K
Sbjct: 4 GSSGCQECKKTIMPG------------TRKMEYKGSSWHETCFICHRCQQPIGTKSFIPK 51
Query: 436 KGLAYCETHYHQLFGNLC 453
+C Y + +
Sbjct: 52 DNQNFCVPCYEKQHASGP 69
Score = 51.6 bits (124), Expect = 8e-09
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 11/64 (17%)
Query: 135 CAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRAL 194
C +C + G R ++ ++WH CF C C + + FI +
Sbjct: 8 CQECKKTIMPG-----------TRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNF 56
Query: 195 CHEC 198
C C
Sbjct: 57 CVPC 60
Score = 38.9 bits (91), Expect = 2e-04
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
G +WH+ CF+C +C +P F + +
Sbjct: 26 GSSWHETCFICHRCQQPIGTKSFIPKDNQ 54
Score = 38.9 bits (91), Expect = 2e-04
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 212 CHKCHGLI--DDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCL 269
C +C I + ++++G +H F C C + + + D N+ +C+
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGT--------KSFIPKD-NQNFCV 58
Query: 270 RCHDKMGIPICGA 282
C++K +
Sbjct: 59 PCYEKQHASGPSS 71
Score = 26.2 bits (58), Expect = 7.0
Identities = 3/25 (12%), Positives = 7/25 (28%)
Query: 533 GLRHYEKNGLAYCETHYHQLFGNLC 557
K+ +C Y + +
Sbjct: 45 TKSFIPKDNQNFCVPCYEKQHASGP 69
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 74.3 bits (183), Expect = 7e-17
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 276 GIPICGACRRPIE--ERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQ 333
G C AC + R + G+ WH F+C+ CE+P KG YC Y
Sbjct: 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYEN 63
Query: 334 LFGNLC 339
F +
Sbjct: 64 KFASGP 69
Score = 70.5 bits (173), Expect = 2e-15
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
CS C E P + + G+ WH+ CF+C+ C +P F +G YC + FA
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAS 67
Query: 68 CCGNG 72
+G
Sbjct: 68 GPSSG 72
Score = 59.3 bits (144), Expect = 1e-11
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 12/78 (15%)
Query: 376 FGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEK 435
+ C C + + G+ WH F+C+ CE+P
Sbjct: 4 GSSGCSACGETVMPG------------SRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPD 51
Query: 436 KGLAYCETHYHQLFGNLC 453
KG YC Y F +
Sbjct: 52 KGAHYCVPCYENKFASGP 69
Score = 53.1 bits (128), Expect = 2e-09
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 11/64 (17%)
Query: 135 CAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRAL 194
C+ C G R ++ WH CF C C + L F+ +G
Sbjct: 8 CSACGETVMPG-----------SRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHY 56
Query: 195 CHEC 198
C C
Sbjct: 57 CVPC 60
Score = 38.9 bits (91), Expect = 2e-04
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
Query: 212 CHKCHGLI--DDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCL 269
C C + + L++ G+ +H + F C+ C L S + + YC+
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSR--------SFVPDK-GAHYCV 58
Query: 270 RCHDKMGIPICGA 282
C++ +
Sbjct: 59 PCYENKFASGPSS 71
Score = 37.7 bits (88), Expect = 6e-04
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
G WH+ CF+C+ C +P F +G
Sbjct: 26 GQTWHEHCFLCSGCEQPLGSRSFVPDKGA 54
Score = 28.9 bits (65), Expect = 0.94
Identities = 5/25 (20%), Positives = 6/25 (24%)
Query: 533 GLRHYEKNGLAYCETHYHQLFGNLC 557
G YC Y F +
Sbjct: 45 SRSFVPDKGAHYCVPCYENKFASGP 69
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 71.9 bits (176), Expect = 2e-15
Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 10/114 (8%)
Query: 275 MGIPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPF--LGHRHYEKKGLAYCETHY 331
+ C C I +R ++ A+ +WH C+ C+ +G Y K G+ C Y
Sbjct: 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY 62
Query: 332 HQLFGNLCFVCNQVIGGDESHYITSR-------ELTYKKGLGYCESHYHQLFGN 378
+LFGN + G + E + Q
Sbjct: 63 IRLFGNSGAGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAA 116
Score = 56.1 bits (135), Expect = 6e-10
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 409 LGKHWHVEHFVCARCEKPF--LGHRHYEKKGLAYCETHYHQLFGNLCFVCNQNHTISLHV 466
+ +WH C+ C+ +G Y K G+ C Y +LFGN + H
Sbjct: 24 MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGH----MG 79
Query: 467 SSREAVLSSDSSVFGLRHYEKKGLAYCETHYHQLFGN 503
S + ++ + ++ G ++ Q
Sbjct: 80 SGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAA 116
Score = 50.8 bits (121), Expect = 5e-08
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPF--PGGIFYEFEGRKYCEH 59
SL C+ C + ++ + WH +C C+ C G Y G C +
Sbjct: 2 SLSWKRCAGCGGKIA-DRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRN 60
Query: 60 DFHVLFAP-CCGNGCP 74
D+ LF G
Sbjct: 61 DYIRLFGNSGAGGSGG 76
Score = 37.7 bits (87), Expect = 0.002
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 157 GRVIKAMNANWHPKCFRCEHCSKELADLG--FIRSQGRALCHEC 198
++ AM++ WH +C +C C +L D+G G LC
Sbjct: 18 RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRND 61
Score = 33.8 bits (77), Expect = 0.039
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 533 GLRHYEKNGLAYCETHYHQLFGNLCFVCNQVIGGDPGTV 571
G Y K+G+ C Y +LFGN + G G V
Sbjct: 46 GTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84
Score = 28.0 bits (62), Expect = 4.5
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 119 DRQTLT--GGAWHQQCFVCAQCFRPF--PGGIFYEFEG 152
DR L WH +C C+ C G Y G
Sbjct: 17 DRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSG 54
Score = 27.6 bits (61), Expect = 5.5
Identities = 9/66 (13%), Positives = 15/66 (22%), Gaps = 3/66 (4%)
Query: 4 GNMYCSRC-NEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFH 62
G + C F + V + GG F + + R +
Sbjct: 54 GMILCRNDYIRLFGNSGAGGSGGHMGSGGDVMVVGEPT--LMGGEFGDEDERLITRLENT 111
Query: 63 VLFAPC 68
A
Sbjct: 112 QFDAAN 117
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 72.1 bits (176), Expect = 2e-15
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 259 TANDMNELYCLRCHDKMGIPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPF--LG 315
+ + C C I +R ++ A+ +WH C+ C+ +G
Sbjct: 43 SKLGGGGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIG 102
Query: 316 HRHYEKKGLAYCETHYHQLFG 336
Y K G+ C Y +LFG
Sbjct: 103 TSSYTKSGMILCRNDYIRLFG 123
Score = 54.4 bits (130), Expect = 3e-09
Identities = 19/89 (21%), Positives = 26/89 (29%), Gaps = 15/89 (16%)
Query: 364 GLGYCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARC 423
G L C C I F + +WH C+ C
Sbjct: 48 GGSGGHMGSGGLSWKRCAGCGGKI-------------ADRFLLYAMDSYWHSRCLKCSSC 94
Query: 424 EKPF--LGHRHYEKKGLAYCETHYHQLFG 450
+ +G Y K G+ C Y +LFG
Sbjct: 95 QAQLGDIGTSSYTKSGMILCRNDYIRLFG 123
Score = 50.1 bits (119), Expect = 9e-08
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPF--PGGIFYEFEGRKYCEHDFHVLF 65
C+ C ++ + WH +C C+ C G Y G C +D+ LF
Sbjct: 64 CAGCGGKIADRF-LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 122
Query: 66 A 66
Sbjct: 123 G 123
Score = 40.5 bits (94), Expect = 2e-04
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 157 GRVIKAMNANWHPKCFRCEHCSKELADLGF--IRSQGRALCHEC 198
++ AM++ WH +C +C C +L D+G G LC
Sbjct: 74 RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRND 117
Score = 37.8 bits (87), Expect = 0.002
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 8/88 (9%)
Query: 189 SQGRALCHECNAQAKAVGFGKHMCHKCHGLIDDKP-LKFRGEVYHPYHFNCTSCGTELNS 247
SQ + + G C C G I D+ L +H C+SC +L
Sbjct: 41 SQSKLGGGGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGD 100
Query: 248 DAREVKSRPGYTANDMNELYCLRCHDKM 275
++ G + C + ++
Sbjct: 101 IGTSSYTKSG-------MILCRNDYIRL 121
Score = 33.6 bits (76), Expect = 0.055
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 533 GLRHYEKNGLAYCETHYHQLFG 554
G Y K+G+ C Y +LFG
Sbjct: 102 GTSSYTKSGMILCRNDYIRLFG 123
Score = 30.5 bits (68), Expect = 0.67
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 119 DRQTLT--GGAWHQQCFVCAQCFRPFPGGIFYEFE 151
DR L WH +C C+ C +
Sbjct: 73 DRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYT 107
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 69.8 bits (171), Expect = 3e-15
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 2/78 (2%)
Query: 264 NELYCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHRHY--EK 321
+ + + C C + + A +H E F C C+ Y +
Sbjct: 2 SSGSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQ 61
Query: 322 KGLAYCETHYHQLFGNLC 339
YC ++++
Sbjct: 62 HATLYCGKCHNEVVSGPS 79
Score = 63.6 bits (155), Expect = 5e-13
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 16/89 (17%)
Query: 367 YCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKP 426
Y FG C C+ ++ G A +H E F C C+
Sbjct: 5 SSGKDYWGKFGEFCHGCSLLMTGPFMVA--------------GEFKYHPECFACMSCKVI 50
Query: 427 FLGHRHY--EKKGLAYCETHYHQLFGNLC 453
Y + YC ++++
Sbjct: 51 IEDGDAYALVQHATLYCGKCHNEVVSGPS 79
Score = 45.2 bits (107), Expect = 2e-06
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 4/64 (6%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGG--IFYEFEGRKYCEHDFHVLF 65
C C+ + + +H +CF C C G YC + +
Sbjct: 18 CHGCSLLMTGP--FMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75
Query: 66 APCC 69
+
Sbjct: 76 SGPS 79
Score = 43.6 bits (103), Expect = 6e-06
Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 212 CHKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLRC 271
CH C L+ + YHP F C SC + Y LYC +C
Sbjct: 18 CHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDA-------YALVQHATLYCGKC 70
Query: 272 HDKMGIPICGA 282
H+++
Sbjct: 71 HNEVVSGPSSG 81
Score = 43.6 bits (103), Expect = 6e-06
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 152 GEFVIGRVIKAMNANWHPKCFRCEHCSKELA--DLGFIRSQGRALCHEC 198
+ G + A +HP+CF C C + D + C +C
Sbjct: 22 SLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKC 70
Score = 33.2 bits (76), Expect = 0.032
Identities = 7/83 (8%), Positives = 17/83 (20%), Gaps = 25/83 (30%)
Query: 492 YCETHYHQLFGNLCFVCNQDHTISRHVSSRESVLSSDSSVFGLRH--------------- 536
Y FG C C+ + + +
Sbjct: 5 SSGKDYWGKFGEFCHGCSL--------LMTGPFMVAGEFKYHPECFACMSCKVIIEDGDA 56
Query: 537 --YEKNGLAYCETHYHQLFGNLC 557
++ YC ++++
Sbjct: 57 YALVQHATLYCGKCHNEVVSGPS 79
Score = 32.8 bits (75), Expect = 0.042
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 544 YCETHYHQLFGNLCFVCNQVIGG 566
Y FG C C+ ++ G
Sbjct: 5 SSGKDYWGKFGEFCHGCSLLMTG 27
Score = 31.3 bits (71), Expect = 0.13
Identities = 7/83 (8%), Positives = 16/83 (19%), Gaps = 25/83 (30%)
Query: 440 YCETHYHQLFGNLCFVCNQNHTISLHVSSREAVLSSDSSVFGLRH--------------- 484
Y FG C C+ + + +
Sbjct: 5 SSGKDYWGKFGEFCHGCSL--------LMTGPFMVAGEFKYHPECFACMSCKVIIEDGDA 56
Query: 485 --YEKKGLAYCETHYHQLFGNLC 505
+ YC ++++
Sbjct: 57 YALVQHATLYCGKCHNEVVSGPS 79
Score = 29.0 bits (65), Expect = 0.95
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 10/48 (20%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCF 172
+H +CF C C G Y + + KC
Sbjct: 34 EFKYHPECFACMSCKVIIEDGDAYALVQHATL----------YCGKCH 71
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 67.2 bits (164), Expect = 2e-14
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 275 MGIPICGACRRPIE----ERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETH 330
G C C PI + ++ + WH + F C +C +G ++ C
Sbjct: 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDC 62
Query: 331 YHQLFGNLC 339
+ G
Sbjct: 63 GKDISGPSS 71
Score = 61.0 bits (148), Expect = 4e-12
Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 2 SLGNMYCSRCNE--GFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEH 59
S G+ C+ C K ++ WH CF C +C G F C
Sbjct: 2 SSGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPD 61
Query: 60 DFHVLFAPCCG 70
+ P G
Sbjct: 62 CGKDISGPSSG 72
Score = 58.3 bits (141), Expect = 4e-11
Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 10/79 (12%)
Query: 375 LFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYE 434
+ C C I G S + WH + F C +C +G
Sbjct: 3 SGSSGCAGCTNPISGL----------GGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLT 52
Query: 435 KKGLAYCETHYHQLFGNLC 453
++ C + G
Sbjct: 53 ERDDILCPDCGKDISGPSS 71
Score = 53.7 bits (129), Expect = 1e-09
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 135 CAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRAL 194
CA C P G + I WH CF C+ CS L GF+ + L
Sbjct: 8 CAGCTNPISG---------LGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDIL 58
Query: 195 CHEC 198
C +C
Sbjct: 59 CPDC 62
Score = 36.7 bits (85), Expect = 0.001
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 13/74 (17%)
Query: 212 CHKCH----GLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELY 267
C C GL K + F +H FNC C L G+ +++
Sbjct: 8 CAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGR--------GFLTER-DDIL 58
Query: 268 CLRCHDKMGIPICG 281
C C + P G
Sbjct: 59 CPDCGKDISGPSSG 72
Score = 36.7 bits (85), Expect = 0.001
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
WH CF C +C G F +
Sbjct: 28 ERQWHNDCFNCKKCSLSLVGRGFLTERDD 56
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 68.2 bits (166), Expect = 4e-14
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 7 YCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPF-PGGIFYEFEGRKYCEHDFHVLF 65
C+ C++ E + +++H +CF CA C + F G + CE D +
Sbjct: 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWT 69
Query: 66 APCCGNGCPSLSTFAISLAGEIS 88
G+G S + + GE +
Sbjct: 70 KINGGSGGSGGSGGDVMVVGEPT 92
Score = 57.8 bits (139), Expect = 2e-10
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 278 PICGACRRPI--EERVVTALGKHWHVEHFVCARCEKPF-LGHRHYEKKGLAYCETHYHQL 334
+C +C + I E + K +H+E F CA C+K F +G R+ CE ++
Sbjct: 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEW 68
Query: 335 FGNLCFVCNQVIGGDESHYITS 356
G + +
Sbjct: 69 TKINGGSGGSGGSGGDVMVVGE 90
Score = 52.8 bits (126), Expect = 1e-08
Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 15/92 (16%)
Query: 372 YHQLFGN--LCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPF-L 428
Y +LFG LC C++ I K +H+E F CA C+K F +
Sbjct: 1 YLRLFGQDGLCASCDKRIRAY------------EMTMRVKDKVYHLECFKCAACQKHFSV 48
Query: 429 GHRHYEKKGLAYCETHYHQLFGNLCFVCNQNH 460
G R+ CE ++
Sbjct: 49 GDRYLLINSDIVCEQDIYEWTKINGGSGGSGG 80
Score = 38.1 bits (88), Expect = 0.001
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 209 KHMCHKCHGLI--DDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNEL 266
+C C I + ++ + +VYH F C +C + R Y + +++
Sbjct: 8 DGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDR-------YLLIN-SDI 59
Query: 267 YCLRCHDKMGIPICGACRRPIEERVVTALGKHWH 300
C + + G+ V +G+
Sbjct: 60 VCEQDIYEWTKINGGSGGSGGSGGDVMVVGEPTL 93
Score = 37.7 bits (87), Expect = 0.002
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 134 VCAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELAD-LGFIRSQGR 192
+CA C + ++ + +H +CF+C C K + ++
Sbjct: 10 LCASCDKRIRAY-----------EMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSD 58
Query: 193 ALCHEC 198
+C +
Sbjct: 59 IVCEQD 64
Score = 34.3 bits (78), Expect = 0.031
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 127 AWHQQCFVCAQCFRPF-PGGIFYEFEGEFV 155
+H +CF CA C + F G + + V
Sbjct: 31 VYHLECFKCAACQKHFSVGDRYLLINSDIV 60
Score = 28.9 bits (64), Expect = 2.1
Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 24/90 (26%)
Query: 497 YHQLFGN--LCFVCNQDHTISRHVSSRESVLSSDSSVF----------------GLRHYE 538
Y +LFG LC C++ + + E + V+ G R+
Sbjct: 1 YLRLFGQDGLCASCDK------RIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLL 54
Query: 539 KNGLAYCETHYHQLFGNLCFVCNQVIGGDP 568
N CE ++ G
Sbjct: 55 INSDIVCEQDIYEWTKINGGSGGSGGSGGD 84
Score = 28.1 bits (62), Expect = 3.3
Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 24/104 (23%)
Query: 445 YHQLFGN--LCFVCNQNHTISLHVSSREAVLSSDSSVF----------------GLRHYE 486
Y +LFG LC C++ + + E + V+ G R+
Sbjct: 1 YLRLFGQDGLCASCDK------RIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLL 54
Query: 487 KKGLAYCETHYHQLFGNLCFVCNQDHTISRHVSSRESVLSSDSS 530
CE ++ + + E L
Sbjct: 55 INSDIVCEQDIYEWTKINGGSGGSGGSGGDVMVVGEPTLMGGEF 98
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 64.0 bits (156), Expect = 4e-13
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 278 PICGACRRPIEERVVTALGKHWHVEHFVCARCEKPF-LGHRHYEKKGLAYCETHYHQLFG 336
C +C + IE VV+ALGK +H + FVCA C PF G R C+ +
Sbjct: 16 TRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75
Score = 55.6 bits (134), Expect = 3e-10
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 366 GYCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEK 425
G Y +L+G CF C+Q I G++ +AL K + + FVCA C
Sbjct: 4 GSSGLDYQRLYGTRCFSCDQFIEGEVVSALGKTYHP--------------DCFVCAVCRL 49
Query: 426 PF-LGHRHYEKKGLAYCETHYHQLFG 450
PF G R C+ +
Sbjct: 50 PFPPGDRVTFNGKECMCQKCSLPVSV 75
Score = 51.3 bits (123), Expect = 1e-08
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 152 GEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGR-ALCHECNAQAKAVG 206
+F+ G V+ A+ +HP CF C C + G+ +C +C+ G
Sbjct: 22 DQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSG 77
Score = 47.1 bits (112), Expect = 4e-07
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRK-YCEH 59
C C++ E ++V++ G+ +H CFVCA C PFP G F G++ C+
Sbjct: 18 CFSCDQFIE--GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQK 68
Score = 40.5 bits (95), Expect = 7e-05
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 212 CHKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLRC 271
C C I+ + + G+ YHP F C C R T N E C +C
Sbjct: 18 CFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDR-------VTFNG-KECMCQKC 69
Query: 272 HDKM 275
+
Sbjct: 70 SLPV 73
Score = 38.2 bits (89), Expect = 5e-04
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
G +H CFVCA C PFP G F G+
Sbjct: 34 GKTYHPDCFVCAVCRLPFPPGDRVTFNGK 62
Score = 27.4 bits (61), Expect = 2.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 548 HYHQLFGNLCFVCNQVIGGD 567
Y +L+G CF C+Q I G+
Sbjct: 9 DYQRLYGTRCFSCDQFIEGE 28
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 64.7 bits (157), Expect = 6e-13
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 4/104 (3%)
Query: 276 GIPICGACRRPIEER-VVTALGKHWHVEHFVCARCEKPF--LGHRHYEKKGLAYCETHYH 332
+ CG C++ I +R + A+ ++WH + C C +G R Y K G C Y
Sbjct: 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 61
Query: 333 QLFGNLCFVCNQVIGGDESH-YITSRELTYKKGLGYCESHYHQL 375
+L G+ + + + E + Q
Sbjct: 62 RLGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQF 105
Score = 48.5 bits (115), Expect = 3e-07
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFP--GGIFYEFEGRKYCEHDFHVLF 65
C C + + + + + WH+ C C C G Y GRK C D+ L
Sbjct: 6 CGGCQQNIG-DRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLG 64
Query: 66 APCCGNGCP 74
G
Sbjct: 65 GSGGHMGSG 73
Score = 47.7 bits (113), Expect = 4e-07
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 404 FACSTLGKHWHVEHFVCARCEKPF--LGHRHYEKKGLAYCETHYHQLFGNLCFVCNQNHT 461
+ + ++WH + C C +G R Y K G C Y +L G+ + +
Sbjct: 17 YFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGGDV 76
Query: 462 IS 463
+
Sbjct: 77 MV 78
Score = 41.6 bits (97), Expect = 7e-05
Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 12/107 (11%)
Query: 212 CHKCHGLIDDKP-LKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLR 270
C C I D+ LK + +H +C CG L R + + + C R
Sbjct: 6 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYK-------LGRKLCRR 58
Query: 271 CHDKMGIPICGACRR----PIEERVVTALGKHWHVEHFVCARCEKPF 313
+ ++G + E + E + F
Sbjct: 59 DYLRLGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQF 105
Score = 39.7 bits (92), Expect = 3e-04
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Query: 157 GRVIKAMNANWHPKCFRCEHCSKELADLG--FIRSQGRALCHECNAQAKAVGFGKHMCHK 214
+KA++ WH C C+ C L ++G GR LC + G HM
Sbjct: 16 RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS--GGHMGSG 73
Query: 215 CHGLIDDKPLKFRGE-VYHPYHFNCTSCGTELNS 247
++ +P GE T+ ++
Sbjct: 74 GDVMVVGEPTLMGGEFGDEDERLITRLENTQFDA 107
Score = 32.0 bits (72), Expect = 0.14
Identities = 13/91 (14%), Positives = 18/91 (19%), Gaps = 11/91 (12%)
Query: 125 GGAWHQQCFVCAQCFRPFP--GGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELA 182
WH+ C C C G Y G + + +
Sbjct: 23 DQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKL---CRRDYLRLGGSGGHMGSGGDVMVV 79
Query: 183 D------LGFIRSQGRALCHECNAQAKAVGF 207
F R + N Q A
Sbjct: 80 GEPTLMGGEFGDEDERLITRLENTQFDAANG 110
Score = 28.1 bits (62), Expect = 3.1
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 533 GLRHYEKNGLAYCETHYHQLFGNLCFVCNQVIGGDPG 569
G R Y K G C Y +L G+ + + G
Sbjct: 44 GRRLYYKLGRKLCRRDYLRLGGSGGHMGSGGDVMVVG 80
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 63.2 bits (154), Expect = 9e-13
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 276 GIPICGACRRPI-EERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQL 334
G CGAC R + V G+ +H F+C C K YC++ Y +
Sbjct: 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKK 65
Query: 335 FGNLCFVCNQVIG 347
+G + Q G
Sbjct: 66 YGPKGYGYGQGAG 78
Score = 55.5 bits (134), Expect = 4e-10
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
C C E+ V +G +H+ CF+C C + + YC+ + + P
Sbjct: 10 CGACGRTVYHAEE-VQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGP 68
Query: 68 CCGN 71
Sbjct: 69 KGYG 72
Score = 52.8 bits (127), Expect = 3e-09
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 409 LGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQ 458
G+ +H F+C C K YC++ Y + +G + Q
Sbjct: 26 DGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQ 75
Score = 40.5 bits (95), Expect = 9e-05
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 157 GRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQ---AKAVGFGK 209
++ ++H CF C C K L C C + K G+G+
Sbjct: 20 AEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQ 75
Score = 32.8 bits (75), Expect = 0.048
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 10/77 (12%)
Query: 208 GKHMCHKCHGLI-DDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNEL 266
G + C C + + ++ G +H F C C L+S +D E+
Sbjct: 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDST--------TVAIHD-AEV 56
Query: 267 YCLRCHDKMGIPICGAC 283
YC C+ K P
Sbjct: 57 YCKSCYGKKYGPKGYGY 73
Score = 32.4 bits (74), Expect = 0.053
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGEF 154
G ++H+ CF+C C + + E
Sbjct: 27 GRSFHRCCFLCMVCRKNLDSTTVAIHDAEV 56
Score = 32.0 bits (73), Expect = 0.067
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 536 HYEKNGLAYCETHYHQLFGNLCFVCNQVIG 565
+ YC++ Y + +G + Q G
Sbjct: 49 VAIHDAEVYCKSCYGKKYGPKGYGYGQGAG 78
Score = 30.8 bits (70), Expect = 0.21
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 484 HYEKKGLAYCETHYHQLFGNLCFVCNQ 510
YC++ Y + +G + Q
Sbjct: 49 VAIHDAEVYCKSCYGKKYGPKGYGYGQ 75
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 61.4 bits (149), Expect = 2e-12
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 278 PICGACRRPIEE----RVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQ 333
C AC +PI + + WH E F C +C +G + +C+
Sbjct: 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSG 65
Query: 334 LFGNLC 339
+ ++
Sbjct: 66 MDTDIS 71
Score = 55.6 bits (134), Expect = 3e-10
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 135 CAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRAL 194
C C +P G + I ++ WH +CF C CS L GF+
Sbjct: 8 CVACSKPISG---------LTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIF 58
Query: 195 CHECNAQAKA 204
C +C +
Sbjct: 59 CQKCGSGMDT 68
Score = 54.1 bits (130), Expect = 1e-09
Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 10/79 (12%)
Query: 375 LFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYE 434
+ C C++ I G WH E F C +C +G
Sbjct: 3 SGSSGCVACSKPISGLTGAK----------FICFQDSQWHSECFNCGKCSVSLVGKGFLT 52
Query: 435 KKGLAYCETHYHQLFGNLC 453
+ +C+ + ++
Sbjct: 53 QNKEIFCQKCGSGMDTDIS 71
Score = 50.6 bits (121), Expect = 2e-08
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 2 SLGNMYCSRCNE--GFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEH 59
S G+ C C++ K + WH +CF C +C G F +C+
Sbjct: 2 SSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQK 61
Query: 60 DFHVLFAPCCG 70
+ G
Sbjct: 62 CGSGMDTDISG 72
Score = 36.4 bits (84), Expect = 0.002
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
WH +CF C +C G F E
Sbjct: 28 DSQWHSECFNCGKCSVSLVGKGFLTQNKE 56
Score = 36.4 bits (84), Expect = 0.002
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 13/76 (17%)
Query: 212 CHKCH----GLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELY 267
C C GL K + F+ +H FNC C L G+ + E++
Sbjct: 8 CVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVG--------KGFLTQN-KEIF 58
Query: 268 CLRCHDKMGIPICGAC 283
C +C M I G
Sbjct: 59 CQKCGSGMDTDISGPS 74
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 57.7 bits (140), Expect = 5e-11
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 278 PICGACRRPI-EERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYC-ETHYHQLF 335
P C C + + VT+LGK WH C +C K H E +G YC Y +F
Sbjct: 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF 60
Query: 336 GNLCFVCNQVIGGDESH 352
G F GG ESH
Sbjct: 61 GPKGFGR----GGAESH 73
Score = 53.9 bits (130), Expect = 1e-09
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHD-FHVLFA 66
C +C++ E+ V S G+ WH+ C C +C + G E EG+ YC H + +F
Sbjct: 3 CPKCDKEVYFAER-VTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61
Query: 67 P-CCGNGCPSLSTF 79
P G G TF
Sbjct: 62 PKGFGRGGAESHTF 75
Score = 48.1 bits (115), Expect = 1e-07
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 409 LGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYC-ETHYHQLFG 450
LGK WH C +C K H E +G YC Y +FG
Sbjct: 19 LGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61
Score = 39.6 bits (93), Expect = 1e-04
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 157 GRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHE-CNAQ---AKAVGFGKHMC 212
+ ++ +WH C +CE C K L G +G+ C+ C + K G G
Sbjct: 13 AERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72
Query: 213 HK 214
H
Sbjct: 73 HT 74
Score = 33.9 bits (78), Expect = 0.017
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGEF 154
G WH+ C C +C + G E EG+
Sbjct: 20 GKDWHRPCLKCEKCGKTLTSGGHAEHEGKP 49
Score = 28.9 bits (65), Expect = 0.99
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 11/66 (16%)
Query: 212 CHKCHGLI-DDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLR 270
C KC + + + G+ +H C CG L S G+ ++ + YC
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSG--------GHAEHE-GKPYCNH 53
Query: 271 -CHDKM 275
C+ M
Sbjct: 54 PCYSAM 59
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 56.6 bits (137), Expect = 1e-10
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 278 PICGACRRPI-EERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCE-THYHQLF 335
C C + + V++LGK WH C RC K H E G +C Y LF
Sbjct: 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLF 69
Query: 336 GN 337
G+
Sbjct: 70 GS 71
Score = 50.9 bits (122), Expect = 1e-08
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHD-FHVLFA 66
C +C++ EK V+S G+ WH+ C C +C + G E +G+ +C + LF
Sbjct: 12 CPKCDKTVYFAEK-VSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFG 70
Query: 67 PCCGNG 72
+G
Sbjct: 71 SGPSSG 76
Score = 47.0 bits (112), Expect = 3e-07
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 409 LGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCE-THYHQLFGN 451
LGK WH C RC K H E G +C Y LFG+
Sbjct: 28 LGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGS 71
Score = 38.9 bits (91), Expect = 2e-04
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 157 GRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHE 197
+ ++ +WH C +CE CSK L G G+ CH+
Sbjct: 22 AEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHK 62
Score = 32.4 bits (74), Expect = 0.046
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGEF 154
G WH+ C C +C + G E +G+
Sbjct: 29 GKDWHKFCLKCERCSKTLTPGGHAEHDGKP 58
Score = 28.5 bits (64), Expect = 1.1
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 10/49 (20%)
Query: 228 GEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLR-CHDKM 275
G+ +H + C C L G+ +D + +C + C+ +
Sbjct: 29 GKDWHKFCLKCERCSKTLTPG--------GHAEHD-GKPFCHKPCYATL 68
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 54.5 bits (131), Expect = 1e-09
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 278 PICGACRRPI--EERVVTALGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLF 335
C C++ + ER+ A + +H+ F C+ C + G YC+ H++QLF
Sbjct: 16 ETCVECQKTVYPMERL-LANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLF 74
Query: 336 GNLCFVCNQVIGGDES 351
+ G S
Sbjct: 75 KSKGNYDEGFGSGPSS 90
Score = 54.5 bits (131), Expect = 1e-09
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
C C + P E+ + +N +++H CF C+ C G + GR YC+ F+ LF
Sbjct: 18 CVECQKTVYPMER-LLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKS 76
Query: 68 CC 69
Sbjct: 77 KG 78
Score = 46.4 bits (110), Expect = 9e-07
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 409 LGKHWHVEHFVCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 450
+ +H+ F C+ C + G YC+ H++QLF
Sbjct: 34 NQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK 75
Score = 39.8 bits (93), Expect = 1e-04
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 160 IKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQ 201
+ A +H CFRC +C+ +L+ + GR C Q
Sbjct: 31 LLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQ 72
Score = 33.3 bits (76), Expect = 0.033
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 208 GKHMCHKCHGLI-DDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNEL 266
+ C +C + + L +V+H F C+ C +L+ Y + +
Sbjct: 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLG--------TYASLH-GRI 64
Query: 267 YCLRCHDKMGIPICGACR 284
YC +++
Sbjct: 65 YCKPHFNQLFKSKGNYDE 82
Score = 32.5 bits (74), Expect = 0.063
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 119 DRQTLTGGAWHQQCFVCAQCFRPFPGGIFYEFEGEF 154
+R +H CF C+ C G + G
Sbjct: 29 ERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRI 64
Score = 26.7 bits (59), Expect = 6.2
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 536 HYEKNGLAYCETHYHQLFG 554
+ +G YC+ H++QLF
Sbjct: 57 YASLHGRIYCKPHFNQLFK 75
Score = 26.7 bits (59), Expect = 7.3
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 25/83 (30%)
Query: 420 CARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQNHTISLHVSSREAVLSSDSSV 479
C C+K Y + L + +H CF C+ + LS +
Sbjct: 18 CVECQKTV-----YPMERLLANQQVFHIS----CFRCSYCNN----------KLSLGT-- 56
Query: 480 FGLRHYEKKGLAYCETHYHQLFG 502
+ G YC+ H++QLF
Sbjct: 57 ----YASLHGRIYCKPHFNQLFK 75
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 47.0 bits (111), Expect = 4e-07
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 276 GIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFL-GHRHYEKKGLAYC 327
G C +C + I RV+ A KH+H +C RC + F G Y + +
Sbjct: 4 GSSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWH 56
Score = 40.5 bits (94), Expect = 7e-05
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 152 GEFVIGRVIKAMNANWHPKCFRCEHCSKELAD-LGFIRSQGRALCHECNAQAKA 204
+++ GRV++A ++HP C C C + A+ C A+
Sbjct: 12 EKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65
Score = 35.1 bits (80), Expect = 0.006
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 15/67 (22%)
Query: 376 FGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFL-GHRHYE 434
+ C C + I G + A KH+H +C RC + F G Y
Sbjct: 4 GSSGCDSCEKYITGRVLEAG--------------EKHYHPSCALCVRCGQMFAEGEEMYL 49
Query: 435 KKGLAYC 441
+ +
Sbjct: 50 QGSSIWH 56
Score = 33.2 bits (75), Expect = 0.028
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 208 GKHMCHKCHGLIDDKPLKFRGEVYHPYHFNCTSCG 242
G C C I + L+ + YHP C CG
Sbjct: 4 GSSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCG 38
Score = 32.8 bits (74), Expect = 0.037
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGGI-FYEFEGRKYCEH 59
S G+ C C + +++ + + +H C +C +C + F G Y +
Sbjct: 2 SSGSSGCDSCEKYIT--GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPA 58
Score = 28.5 bits (63), Expect = 1.3
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCF 34
C RC + F E++ +WH C
Sbjct: 34 CVRCGQMFAEGEEMYLQGSSIWHPACR 60
Score = 28.5 bits (63), Expect = 1.3
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 11/49 (22%)
Query: 125 GGAWHQQCFVCAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCFR 173
+H C +C +C + F G +G + WHP C +
Sbjct: 24 EKHYHPSCALCVRCGQMFAEGEEMYLQGSSI-----------WHPACRQ 61
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 44.6 bits (105), Expect = 3e-06
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 278 PICGACRRPI--EERVVTALGKHWHVEHFVCARCEKPFL--GHRHYEKKGLAYCETHYHQ 333
+C C + ER+ G +H F C CE G+ + G YC H Q
Sbjct: 16 DLCALCGEHLYVLERL-CVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQ 74
Query: 334 LF 335
Sbjct: 75 TD 76
Score = 39.5 bits (92), Expect = 2e-04
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGG--IFYEFEGRKYCEHDFHVLF 65
C+ C E E++ NG +H+ CF C C G + +G YC
Sbjct: 18 CALCGEHLYVLERLC-VNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTD 76
Query: 66 AP 67
+
Sbjct: 77 SG 78
Score = 38.0 bits (88), Expect = 6e-04
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 406 CSTLGKHWHVEHFVCARCEKPFL--GHRHYEKKGLAYCETHYHQLF 449
G +H F C CE G+ + G YC H Q
Sbjct: 31 LCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTD 76
Score = 32.6 bits (74), Expect = 0.044
Identities = 10/46 (21%), Positives = 13/46 (28%), Gaps = 2/46 (4%)
Query: 160 IKAMNANWHPKCFRCEHCSKELA--DLGFIRSQGRALCHECNAQAK 203
+ +H CFRC C L G C + Q
Sbjct: 31 LCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTD 76
Score = 29.1 bits (65), Expect = 0.76
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 8/70 (11%)
Query: 208 GKHMCHKCHGLI-DDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNEL 266
+C C + + L G +H F C +C L E G
Sbjct: 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDG-------HF 66
Query: 267 YCLRCHDKMG 276
YCL+ +
Sbjct: 67 YCLQHLPQTD 76
Score = 26.1 bits (57), Expect = 9.7
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 119 DRQTLTGGAWHQQCFVCAQCFRPFPGGIFYEFEGE 153
+R + G +H+ CF C C G + + G+
Sbjct: 29 ERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGD 63
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 39.8 bits (93), Expect = 9e-05
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 279 ICGACRRPIE--ERVVTALGKHWHVEH--FVCARCEKPFLGHRHYEKKGLAYC 327
+C C I+ + VT WH F+C+ C K +G + +G+ +C
Sbjct: 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFC 56
Score = 39.5 bits (92), Expect = 1e-04
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 7 YCSRCNEGFEPEEKIVNSNGELWH--QQCFVCAQCFRPFPGGIFYEFEGRKYC 57
C C+ +PE + V N WH +CF+C+ C + G F EG +C
Sbjct: 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFC 56
Score = 32.1 bits (73), Expect = 0.054
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 14/68 (20%)
Query: 376 FGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEH--FVCARCEKPFLGHRHY 433
+C C+ I + + WH F+C+ C K +G +
Sbjct: 1 HAVVCQGCHNAIDPE------------VQRVTYNNFSWHASTECFLCSCCSKCLIGQKFM 48
Query: 434 EKKGLAYC 441
+G+ +C
Sbjct: 49 PVEGMVFC 56
Score = 31.8 bits (72), Expect = 0.058
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 160 IKAMNANWH--PKCFRCEHCSKELADLGFIRSQGRALC-HEC 198
+ N +WH +CF C CSK L F+ +G C EC
Sbjct: 19 VTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVEC 60
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.004
Identities = 55/459 (11%), Positives = 120/459 (26%), Gaps = 131/459 (28%)
Query: 142 FPGGIFY-EFEGEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNA 200
IF+ + V++ + S + H
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQK-------LLYQIDPNWTSRSDHSSNIKLRIHS--I 230
Query: 201 QAKAVGFGKHMCHKCHGLI--DDKPLKFRGEVYHPYH-----FNC----TS--------C 241
QA+ K ++ + L+ + V + +C T+
Sbjct: 231 QAELRRLLKSKPYE-NCLLVLLN--------VQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 242 GTELNSDAREVKSRPGYTANDMNELY--CLRCHDKM-------GIP----ICGACRRPIE 288
+ T +++ L L C + P I R
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 289 ERVVTALGKHW-HVEHF-------VCARCEKPFLGHRHYEKKGLAYCETHYHQLF----- 335
+W HV +P + +++ L+ +F
Sbjct: 342 ATW-----DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR--LS--------VFPPSAH 386
Query: 336 ---GNLCFVCNQVIGGDESHYITSRELTYKKGL---GYCESHY--HQLFGNLCFVCNQVI 387
L + VI D + +L +K L ES ++ L
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVN--KL-HKYSLVEKQPKESTISIPSIYLELKVKLENE- 442
Query: 388 GGDLFTALNK----------AWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKKG 437
AL++ + L ++++ +GH H +
Sbjct: 443 -----YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY-----------SHIGH-HLKNIE 485
Query: 438 LAYCETHYHQLFGNLCFVCNQNHTISLHVSSREAVLSSDSSVFGLRHYEKKGLAYC---E 494
T + +F + F+ + I ++ A S +++ L+ Y+ Y +
Sbjct: 486 HPERMTLFRMVFLDFRFLEQK---IRHDSTAWNASGSILNTLQQLKFYKP----YICDND 538
Query: 495 THYHQLFGNLC-FV--CNQDHTISRHVSSRESVLSSDSS 530
Y +L + F+ ++ S++ L ++
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Score = 36.8 bits (84), Expect = 0.025
Identities = 38/242 (15%), Positives = 68/242 (28%), Gaps = 50/242 (20%)
Query: 328 ETHYHQLFGNLCFVCNQVIGGDESHYITSRELTYKKGLGYCESHYHQLFGNLCFVCNQVI 387
+Y L + Q YI R+ Y Q+F V
Sbjct: 88 RINYKFLMSPIKTEQRQP-SMMTRMYIEQRDRLYNDN---------QVFAKY-NVSRL-- 134
Query: 388 GGDLFTALNKA--------WCVHH--FACSTLGKHWHVEHFVCA----RCEKPF------ 427
+ L +A + GK W VC +C+ F
Sbjct: 135 --QPYLKLRQALLELRPAKNVLIDGVLGS---GKTWVALD-VCLSYKVQCKMDFKIFWLN 188
Query: 428 LGHRHYEKKGLAYCETHYHQLFGNLCFVCNQNHTISLHVSSREAVLSSDSSVFGLRHYEK 487
L + + + L + +Q+ N + + I L + S +A L + + Y +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL---RRLLKSKPY-E 244
Query: 488 KGLAY----CETHYHQLFGNLC--FVCNQDHTISRHVSS-RESVLSSDSSVFGLRHYEKN 540
L F C + + ++ +S+ + +S D L E
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 541 GL 542
L
Sbjct: 305 SL 306
Score = 35.2 bits (80), Expect = 0.071
Identities = 21/137 (15%), Positives = 37/137 (27%), Gaps = 35/137 (25%)
Query: 109 LQRRFRARGEDRQTLTGGAWHQQ---------CFVCAQCFRPFPGGIFYEFEGEFVIGRV 159
+ + + E+ L H+ F P+ FY IG
Sbjct: 431 IYLELKVKLENEYAL-----HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-----IGHH 480
Query: 160 IKAMNANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVG-------FGKHMC 212
+K + FR D F+ + R NA + + ++C
Sbjct: 481 LKNIEHPERMTLFR-----MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 213 HKC---HGLIDDKPLKF 226
L++ L F
Sbjct: 536 DNDPKYERLVNAI-LDF 551
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 35.3 bits (81), Expect = 0.053
Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 8/42 (19%)
Query: 237 NCTSCGTELNSDAREVKSRPGYT-----ANDMNELYCLRCHD 273
C CG + E GY D E+ C RC
Sbjct: 6 RCIGCGAAIQF---ENPKNAGYAPKSVLEKDAEEVICQRCFR 44
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron
transfer, Fe reduction, GEO sulfurreducens, cytochrome
C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Length = 158
Score = 33.8 bits (76), Expect = 0.076
Identities = 23/134 (17%), Positives = 37/134 (27%), Gaps = 19/134 (14%)
Query: 168 HPKCFRCEHCSKELADLGFIRSQGR-------ALCHECNAQAKAVGFGKHMCHKCHGLID 220
H ++C C +L + C C+ A C KCH +
Sbjct: 24 HLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASD-CGKCHPGLK 82
Query: 221 DKPLKFRGEV--------YHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCLRCH 272
L ++ V H F C C T++ + C CH
Sbjct: 83 PAKLTYKTSVGEAYFDHDIHLSMFKCADCHTKVFKYRKGSAPATMADMEKGK--SCGVCH 140
Query: 273 D-KMGIPICGACRR 285
+ K + C +
Sbjct: 141 NGKDAFSVADDCVK 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.17
Identities = 48/305 (15%), Positives = 73/305 (23%), Gaps = 114/305 (37%)
Query: 52 EGRKYCEHDFHV---LFAPCCGNGCPS---LSTFAISLAGEISGWYPPCLKITMSLGNMY 105
+ K ++ L P + P L + IS P + + L + Y
Sbjct: 204 DAEKVFTQGLNILEWLENP---SNTPDKDYLLSIPISC---------PLIGVI-QLAH-Y 249
Query: 106 CFPLQRRFRARGEDRQTLTGGAWHQQCFVCAQCFRPFPGGIFYEFEGEFVIGRVIKAMNA 165
+ GE R L G H Q V A A
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI----------------------AETD 287
Query: 166 NWHPKCFRCEHCSKELADLGFI--RSQG----RALCHECNAQAKAVGFGK--HMCHKCHG 217
+W + F K + L FI R +L + G M
Sbjct: 288 SW--ESFF-VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS-ISN 343
Query: 218 LIDDKPLKF---------RGEVYH------PYHFNCTS-----CGTELNSDAREVKSRPG 257
L ++ + G+ + + G LN R+ K+ G
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG--LNLTLRKAKAPSG 401
Query: 258 YTANDMNELYCLRCHDKMGIPICGACRRP-IEER--VVTALGKHWHVEHFVCARCEKPFL 314
D+ IP R+ R V + PF
Sbjct: 402 --------------LDQSRIPFSE--RKLKFSNRFLPVAS-----------------PF- 427
Query: 315 GHRHY 319
H H
Sbjct: 428 -HSHL 431
Score = 29.2 bits (65), Expect = 4.5
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 8/29 (27%)
Query: 377 GNLCFVCN------Q-VIGGDLFTALNKA 398
G L + N Q V GDL AL+
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDL-RALDTV 1865
Score = 29.2 bits (65), Expect = 4.7
Identities = 32/167 (19%), Positives = 43/167 (25%), Gaps = 52/167 (31%)
Query: 2 SLGNMYCSRCNE-GFEPEEKIVNSNGELWHQQCFVCAQCFRPFPGG-IFYEFEGRKYCEH 59
L + Y GF P E G H Q V A F+ RK
Sbjct: 245 QLAH-YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV-SVRKAIT- 301
Query: 60 DFHVLF---------APCC-------------GNGCPS--LS------TFAISLAGEISG 89
VLF P G PS LS + +
Sbjct: 302 ---VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 90 WYPPCLKITMSLGN-------------MYCFPLQ-RRFRARGEDRQT 122
P ++ +SL N +Y L R+ +A Q+
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus
scrofa} SCOP: g.39.1.4
Length = 31
Score = 28.5 bits (63), Expect = 0.48
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 5 NMYCSRCNEGFEPEEKIVNSNGELWHQQCF 34
N C+RC + P EK VN + WH+ CF
Sbjct: 3 NPNCARCGKIVYPTEK-VNCLDKFWHKACF 31
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 32.2 bits (73), Expect = 0.48
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 237 NCTSCGTELNSDAREVKSRPGYT---ANDMNELYCLRCHD 273
C CG E+ + E K+ GY + + ++ C RC
Sbjct: 6 KCIGCGVEIQT---EDKNEVGYAPASSLEKEQVICQRCFR 42
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural
genomics, PSI-2, protein structure initiative; NMR
{Escherichia coli} SCOP: g.41.18.1
Length = 101
Score = 30.3 bits (68), Expect = 0.49
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 167 WHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQ---AKAVGFGKHMCHKCHGLIDDKP 223
RC C + + + +ALC +C+ KA G + C HGLI K
Sbjct: 44 QDNGHARCRSCGEFI--------EMKALCPDCHQPLQVLKACGAVDYFCQHGHGLISKKR 95
Query: 224 LKFR 227
++F
Sbjct: 96 VEFV 99
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.2 bits (70), Expect = 0.61
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 9/55 (16%)
Query: 247 SDAREVKSRPGYTANDMNELYCLRCH---------DKMGIPICGACRRPIEERVV 292
+ K N L C C G +C C + +++V
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLV 57
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer
membrane, electron trans; HET: HEC; 3.20A {Shewanella
oneidensis}
Length = 669
Score = 31.8 bits (70), Expect = 0.77
Identities = 46/384 (11%), Positives = 88/384 (22%), Gaps = 49/384 (12%)
Query: 195 CHECNAQAKAVGFGKHMCHKCHG----LIDDKPLKFRGEVYHPYHF-----NCTSCGTEL 245
CH A C CH H F NC +C +
Sbjct: 197 CHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADN 256
Query: 246 NSDAREVKSRPGYTANDMNELYCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFV 305
A R + E C CH ++ P G ++
Sbjct: 257 PDLA----DRQNWYRVPTME-ACGACHTQINFP--------------AGQGHPAQTDNSN 297
Query: 306 CARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQVIGGDESHYITSRELTYKKGL 365
C C H + L + + + + + + G
Sbjct: 298 CVAC------HNADWTANVHSNAAQTSALAQFNASISSASMDANGTITVAVSLTNPTTGT 351
Query: 366 GYCESHYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEK 425
Y +S L F+ + I + T+ + + + +
Sbjct: 352 AYADSA-----DKLKFISDLRIYANWGTSFDYSSRSARSIRLPESTPIAGSNGTYSYNIS 406
Query: 426 PFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQNHTISLHVSSREAVLSSDSSVFGLRHY 485
E ++ C+ L + S + + + R
Sbjct: 407 GLTVPAGTESDRGGLAIQGRVCAKDSVLVDCSTELAEVLVIKSSHSYFNMSALTTTGRRE 466
Query: 486 EKKGLAYCETH---------YHQLFGNLCFVCNQDHTISRHVSSRESVLSSDSSVFGLRH 536
H C +C+ + ++ ++ S+ S D
Sbjct: 467 VISNAKCASCHGDQQLNIHGARNDLAGQCQLCHNPNMLADATATNPSMTSFDFKQLIHGL 526
Query: 537 YEKNGLAYCETHYHQLFGNLCFVC 560
+ + + +Y GN C C
Sbjct: 527 HSSQFAGFEDLNYPGNIGN-CAQC 549
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural
genomics, PSI-2, protein structure initiative; NMR
{Salmonella typhimurium LT2}
Length = 81
Score = 28.8 bits (64), Expect = 0.96
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 11/64 (17%)
Query: 167 WHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQA---KAVGFGKHMCHKCHGLIDDKP 223
+ CE C+K+ +ALC +C KA G + C HGLI K
Sbjct: 14 RNGDTAHCETCAKDF--------SLQALCPDCRQPLQVLKACGAVDYFCQNGHGLISKKR 65
Query: 224 LKFR 227
+ F
Sbjct: 66 VNFV 69
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 30.8 bits (70), Expect = 1.6
Identities = 22/102 (21%), Positives = 30/102 (29%), Gaps = 25/102 (24%)
Query: 190 QGRALCHECNAQAKAVG----FGKHMCHKCHGLIDDKPLKFRGEVYHPYHF---NCTSCG 242
C C+A+ V C CHG + H H NCTSC
Sbjct: 10 ADMGSCQSCHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQFDPHNSHLGDINCTSC- 68
Query: 243 TELNSDAREVKSRPGYTANDMNELYCLRCH--DKMGIPICGA 282
+ ++ + YC CH D +P A
Sbjct: 69 ---------------HKGHEEPKFYCNECHSFDIKPMPFSDA 95
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics,
midwest center for ST genomics, protein structure
initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter
aurescens}
Length = 313
Score = 28.7 bits (65), Expect = 4.7
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 216 HGLIDDKPLKFRGEVYHPYHFN-CTSCGTELNSDAREVKSRP 256
+ + L+ E P F G EL SD + + +
Sbjct: 72 DAIATGQELRIIREALVPITFVLVARPGVEL-SDIKRISTHG 112
>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor;
electron transport; HET: HEM; 2.00A {Desulfovibrio
vulgaris} SCOP: a.138.1.1 PDB: 1gws_A* 1h29_A*
Length = 545
Score = 28.6 bits (61), Expect = 8.1
Identities = 27/239 (11%), Positives = 54/239 (22%), Gaps = 29/239 (12%)
Query: 174 CEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHMCHKCHGLIDDKPLKFRGEVYHP 233
C C +LA G C C+ + L +
Sbjct: 114 CIGCHTDLAKAGKKTGPQDGECRSCHNPKPSAASSWKEIGFDKSLHYRHVASKAIKPVGD 173
Query: 234 YHFNCTSCGTELNSDAREVKSRPGYTAN-----------------DMNELYCLRCHD--- 273
NC +C + ++++ + C+ CH
Sbjct: 174 PQKNCGACHHVYDEASKKLVWGKNKEDSCRACHGEKPVDKRPALDTAAHTACISCHMDVA 233
Query: 274 ----KMGIPICGACRRPIEERVVTALGKHWHVEHF-----VCARCEKPFLGHRHYEKKGL 324
+ G C C P + + + ++ +
Sbjct: 234 KTKAETGPVNCAGCHAPEAQAKFKVVREVPRLDRGQPDAALILPVPGKDAPREMKGTMKP 293
Query: 325 AYCETHYHQLFGNLCFVCNQVIGGDESHYITSRELTYKKGLGYCESHYHQLFGNLCFVC 383
+ H+ N C C+ V + T K + ++ + C C
Sbjct: 294 VAFDHKAHEAKANDCRTCHHVRIDTCTACHTVNGTADSKFVQLEKAMHQPDSMRSCVGC 352
>2gvi_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1
g.39.1.18
Length = 204
Score = 27.8 bits (61), Expect = 8.5
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 7/33 (21%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCFVCAQCF 40
C C E E NG+ VC +
Sbjct: 175 CDVCGEYT-YEADAKLLNGK------PVCKPDY 200
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 27.2 bits (59), Expect = 8.9
Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 187 IRSQGRALCHECNAQAKAVGFGKHMCHKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELN 246
+ G C C Q +G +C C + K + C C
Sbjct: 50 VAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKIC----- 104
Query: 247 SDAREVKSRPG 257
+ REV R G
Sbjct: 105 LEQREVWKRSG 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.141 0.493
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,655,004
Number of extensions: 589474
Number of successful extensions: 2901
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2430
Number of HSP's successfully gapped: 494
Length of query: 594
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 495
Effective length of database: 3,937,614
Effective search space: 1949118930
Effective search space used: 1949118930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.0 bits)