RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10533
(594 letters)
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 68.3 bits (167), Expect = 1e-15
Identities = 30/35 (85%), Positives = 35/35 (100%)
Query: 304 FVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNL 338
FVCA+CEKPFLGHRHYE+KGLAYCETHY+QLFG++
Sbjct: 1 FVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 35
Score = 68.3 bits (167), Expect = 1e-15
Identities = 30/35 (85%), Positives = 35/35 (100%)
Query: 418 FVCARCEKPFLGHRHYEKKGLAYCETHYHQLFGNL 452
FVCA+CEKPFLGHRHYE+KGLAYCETHY+QLFG++
Sbjct: 1 FVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 35
Score = 45.2 bits (107), Expect = 2e-07
Identities = 19/25 (76%), Positives = 23/25 (92%)
Query: 480 FGLRHYEKKGLAYCETHYHQLFGNL 504
G RHYE+KGLAYCETHY+QLFG++
Sbjct: 11 LGHRHYERKGLAYCETHYNQLFGDV 35
Score = 44.8 bits (106), Expect = 2e-07
Identities = 18/25 (72%), Positives = 22/25 (88%)
Query: 532 FGLRHYEKNGLAYCETHYHQLFGNL 556
G RHYE+ GLAYCETHY+QLFG++
Sbjct: 11 LGHRHYERKGLAYCETHYNQLFGDV 35
Score = 35.6 bits (82), Expect = 4e-04
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 34 FVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLF 65
FVCA+C +PF G YE +G YCE ++ LF
Sbjct: 1 FVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 32
>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 64.8 bits (158), Expect = 2e-14
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 203 KAVGFGKHMCHKCHGLIDDKPLKFRGEVYHPYHF 236
KA G GK++C KCH +ID++PL F+ + YHP HF
Sbjct: 2 KARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHF 35
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 61.7 bits (150), Expect = 3e-13
Identities = 24/30 (80%), Positives = 26/30 (86%)
Query: 274 KMGIPICGACRRPIEERVVTALGKHWHVEH 303
MG+PICGACRRPIE RVV A+GK WHVEH
Sbjct: 2 SMGVPICGACRRPIEGRVVNAMGKQWHVEH 31
Score = 26.3 bits (58), Expect = 1.0
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 14/44 (31%)
Query: 374 QLFGNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEH 417
+ +C C + I G + A+ GK WHVEH
Sbjct: 2 SMGVPICGACRRPIEGRVVNAM--------------GKQWHVEH 31
Score = 24.7 bits (54), Expect = 4.1
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 13/36 (36%)
Query: 134 VCAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHP 169
+C C RP + GRV+ AM WH
Sbjct: 7 ICGACRRP-------------IEGRVVNAMGKQWHV 29
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 59.9 bits (145), Expect = 1e-12
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 2 SLGNMYCSRCNEGFEPEEKIVNSNGELWHQQC 33
+L + C RC GF P EKIVNSNGEL+H+QC
Sbjct: 4 ALASATCERCKGGFAPAEKIVNSNGELYHEQC 35
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 55.5 bits (134), Expect = 5e-11
Identities = 29/35 (82%), Positives = 32/35 (91%)
Query: 34 FVCAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAPC 68
FVCAQCF+ FP G+FYEFEGRKYCEHDF +LFAPC
Sbjct: 1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPC 35
Score = 43.5 bits (103), Expect = 7e-07
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 304 FVCARCEKPFLGHRHYEKKGLAYCETHYHQLF 335
FVCA+C + F YE +G YCE + LF
Sbjct: 1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 32
Score = 43.5 bits (103), Expect = 7e-07
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 418 FVCARCEKPFLGHRHYEKKGLAYCETHYHQLF 449
FVCA+C + F YE +G YCE + LF
Sbjct: 1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 32
Score = 31.2 bits (71), Expect = 0.020
Identities = 16/20 (80%), Positives = 18/20 (90%)
Query: 133 FVCAQCFRPFPGGIFYEFEG 152
FVCAQCF+ FP G+FYEFEG
Sbjct: 1 FVCAQCFQQFPEGLFYEFEG 20
Score = 28.9 bits (65), Expect = 0.13
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 536 HYEKNGLAYCETHYHQLF 553
YE G YCE + LF
Sbjct: 15 FYEFEGRKYCEHDFQMLF 32
Score = 28.5 bits (64), Expect = 0.19
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 484 HYEKKGLAYCETHYHQLF 501
YE +G YCE + LF
Sbjct: 15 FYEFEGRKYCEHDFQMLF 32
Score = 26.6 bits (59), Expect = 0.82
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 172 FRCEHCSKELADLGFIRSQGRALCHEC 198
F C C ++ + F +GR C
Sbjct: 1 FVCAQCFQQFPEGLFYEFEGRKYCEHD 27
Score = 24.7 bits (54), Expect = 3.5
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 8/38 (21%)
Query: 339 CFVCNQVIGGDESHYITSRELTYKKGLGYCESHYHQLF 376
C C Q + +G YCE + LF
Sbjct: 3 CAQCFQQFPEGLFYE--------FEGRKYCEHDFQMLF 32
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 45
Score = 54.0 bits (130), Expect = 2e-10
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 277 IPICGACRRPIEERVVTALGKHWHVEHF 304
P+C C + I + ALGK WH E F
Sbjct: 18 TPMCAHCNQVIRGPFLVALGKSWHPEEF 45
Score = 35.5 bits (82), Expect = 6e-04
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 379 LCFVCNQVIGGDLFTALNKAWCVHHF 404
+C CNQVI G AL K+W F
Sbjct: 20 MCAHCNQVIRGPFLVALGKSWHPEEF 45
Score = 30.1 bits (68), Expect = 0.063
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 13/39 (33%)
Query: 134 VCAQCFRPFPGGIFYEFEGEFVIGRVIKAMNANWHPKCF 172
+CA C + + G + A+ +WHP+ F
Sbjct: 20 MCAHCNQV-------------IRGPFLVALGKSWHPEEF 45
Score = 24.7 bits (54), Expect = 5.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 211 MCHKCHGLIDDKPLKFRGEVYHPYHF 236
MC C+ +I L G+ +HP F
Sbjct: 20 MCAHCNQVIRGPFLVALGKSWHPEEF 45
>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 45.3 bits (107), Expect = 1e-07
Identities = 17/21 (80%), Positives = 20/21 (95%)
Query: 152 GEFVIGRVIKAMNANWHPKCF 172
GEF+IGRVIKAMN +WHP+CF
Sbjct: 5 GEFIIGRVIKAMNNSWHPECF 25
>d2cora1 g.39.1.3 (A:43-73) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 44.9 bits (106), Expect = 2e-07
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 10/41 (24%)
Query: 237 NCTSCGTELNSDAREVKSRPGYTANDMNELYCLRCHDKMGI 277
NC +CG EL +DARE+K ELYCL CHDKMG+
Sbjct: 1 NCANCGKELTADARELKG----------ELYCLPCHDKMGV 31
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 43.9 bits (104), Expect = 5e-07
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 278 PICGACRRPIEERVVTALGKHWHVEHF 304
P CG C RP+ E ++A+ WH E F
Sbjct: 9 PKCGGCNRPVLENYLSAMDTVWHPECF 35
Score = 38.5 bits (90), Expect = 4e-05
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 371 HYHQLFGNLCFVCNQVIGGDLFTALNKAWCVHHF 404
+ +F C CN+ + + +A++ W F
Sbjct: 2 DFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECF 35
Score = 32.3 bits (74), Expect = 0.007
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 152 GEFVIGRVIKAMNANWHPKCF 172
V+ + AM+ WHP+CF
Sbjct: 15 NRPVLENYLSAMDTVWHPECF 35
Score = 24.2 bits (53), Expect = 5.1
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 330 HYHQLFGNLCFVCNQVIGGD 349
+ +F C CN+ + +
Sbjct: 2 DFLAMFSPKCGGCNRPVLEN 21
Score = 24.2 bits (53), Expect = 5.1
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 548 HYHQLFGNLCFVCNQVIGGD 567
+ +F C CN+ + +
Sbjct: 2 DFLAMFSPKCGGCNRPVLEN 21
Score = 23.8 bits (52), Expect = 8.9
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 212 CHKCHGLIDDKPLKFRGEVYHPYHF 236
C C+ + + L V+HP F
Sbjct: 11 CGGCNRPVLENYLSAMDTVWHPECF 35
>d2d8xa1 g.39.1.3 (A:33-64) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 43.3 bits (102), Expect = 9e-07
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 173 RCEHCSKELADLGFIRSQGRALCHECNAQAKA 204
RC+ C + LAD+GF+++ GR LC C+ + KA
Sbjct: 1 RCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 32
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 42.0 bits (99), Expect = 3e-06
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 35 VCAQCFRPFPGGIFYEFEGRKYCEHDFH 62
VC CF F G F+E +GR +CE +H
Sbjct: 1 VCGDCFTSFSTGSFFELDGRPFCELHYH 28
Score = 39.0 bits (91), Expect = 3e-05
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 305 VCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 336
VC C F +E G +CE HYH G
Sbjct: 1 VCGDCFTSFSTGSFFELDGRPFCELHYHHRRG 32
Score = 39.0 bits (91), Expect = 3e-05
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 419 VCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 450
VC C F +E G +CE HYH G
Sbjct: 1 VCGDCFTSFSTGSFFELDGRPFCELHYHHRRG 32
Score = 28.9 bits (65), Expect = 0.094
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 134 VCAQCFRPFPGGIFYEFEG 152
VC CF F G F+E +G
Sbjct: 1 VCGDCFTSFSTGSFFELDG 19
Score = 27.4 bits (61), Expect = 0.40
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 536 HYEKNGLAYCETHYHQLFG 554
+E +G +CE HYH G
Sbjct: 14 FFELDGRPFCELHYHHRRG 32
Score = 26.3 bits (58), Expect = 0.97
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 484 HYEKKGLAYCETHYHQLFG 502
+E G +CE HYH G
Sbjct: 14 FFELDGRPFCELHYHHRRG 32
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 29.7 bits (67), Expect = 0.057
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 270 RCHDKMGIPICGACRRPIE--ERVVTALGKHWHVEHF 304
+C + P C C + I ++ V G WH + F
Sbjct: 1 KCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCF 37
Score = 25.5 bits (56), Expect = 2.0
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCF 34
C C + ++ V G +WH+ CF
Sbjct: 11 CKGCFKAIVAGDQNVEYKGTVWHKDCF 37
>d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme
{Pseudomonas putida [TaxId: 303]}
Length = 242
Score = 31.9 bits (71), Expect = 0.17
Identities = 15/167 (8%), Positives = 34/167 (20%)
Query: 198 CNAQAKAVGFGKHMCHKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPG 257
+ +G + + D+ +V + + +V+
Sbjct: 52 VVTIKRELGDSASVRVDVNQYWDESQAIRACQVLGDNGIDLIEQPISRINRGGQVRLNQR 111
Query: 258 YTANDMNELYCLRCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCARCEKPFLGHR 317
A M + D + GA + + + G
Sbjct: 112 TPAPIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQIAEAAGIGLYGGT 171
Query: 318 HYEKKGLAYCETHYHQLFGNLCFVCNQVIGGDESHYITSRELTYKKG 364
E H L + + I + Y+
Sbjct: 172 MLEGSIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIVNEPPQYRDF 218
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia
coli [TaxId: 562]}
Length = 71
Score = 29.4 bits (66), Expect = 0.19
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 172 FRCEHCSKELADLGFIRSQGRALCHECNAQA---KAVGFGKHMCHKCHGLIDDKPLKF 226
RC C + + + +ALC +C+ KA G + C HGLI K ++F
Sbjct: 19 ARCRSCGEFI--------EMKALCPDCHQPLQVLKACGAVDYFCQHGHGLISKKRVEF 68
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit,
IlvH {Escherichia coli [TaxId: 562]}
Length = 76
Score = 29.2 bits (66), Expect = 0.21
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 460 HTISLHVSSREAVLSSDSSVFGLRHYEKKGLAYCETHYHQLFGNLCFVCNQDHTI 514
+S+ + + LS +F R Y + L T L + D +
Sbjct: 2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLS-RMTIQTVGDEKV 55
Score = 27.3 bits (61), Expect = 1.1
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 512 HTISRHVSSRESVLSSDSSVFGLRHYEKNGLAYCETH 548
+S + + LS +F R Y L T
Sbjct: 2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTD 38
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit,
IlvH {Nitrosomonas europaea [TaxId: 915]}
Length = 77
Score = 29.2 bits (66), Expect = 0.25
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 14/57 (24%)
Query: 460 HTISLHVSSREAVLSSDSSVFGLRHYEKKGLAYCETHYHQLFGNLCFVCNQDHTISR 516
H ISL + + LS + +F R Y + L+ T D T+SR
Sbjct: 3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTE--------------DPTLSR 45
Score = 27.3 bits (61), Expect = 1.3
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 512 HTISRHVSSRESVLSSDSSVFGLRHYEKNGLAYCETH 548
H IS + + LS + +F R Y L+ T
Sbjct: 3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTE 39
>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 30
Score = 27.5 bits (61), Expect = 0.31
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 5 NMYCSRCNEGFEPEEKIVNSNGELWHQQCF 34
N C+RC + P EK+ N + WH+ CF
Sbjct: 2 NPNCARCGKIVYPTEKV-NCLDKFWHKACF 30
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit,
IlvH {Thermotoga maritima [TaxId: 2336]}
Length = 78
Score = 28.8 bits (65), Expect = 0.36
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 460 HTISLHVSSREAVLSSDSSVFGLRHYEKKGLAYCETH 496
H +S+ V ++ V+ +++F R + + E+
Sbjct: 4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESE 40
Score = 26.9 bits (60), Expect = 1.5
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 512 HTISRHVSSRESVLSSDSSVFGLRHYEKNGLAYCETH 548
H +S V ++ V+ +++F R + + + E+
Sbjct: 4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESE 40
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 27.4 bits (61), Expect = 0.39
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 280 CGACRRPIEERVVTALGKHWHVEHF 304
C C +PI +R++ A+GK +H F
Sbjct: 11 CATCSQPILDRILRAMGKAYHPGCF 35
>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 27.1 bits (60), Expect = 0.45
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 174 CEHCSKELADLGFIRSQGRALCHEC 198
C HC +A +GF+ +G C C
Sbjct: 2 CAHCKNTMAYIGFVEEKGALYCELC 26
Score = 24.0 bits (52), Expect = 7.2
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 36 CAQCFRPFPGGIFYEFEGRKYCEHDFHVLFA 66
CA C F E +G YCE + FA
Sbjct: 2 CAHCKNTMAYIGFVEEKGALYCELCYEKFFA 32
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 27.4 bits (61), Expect = 0.52
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 372 YHQLFGNLCFVCNQVIGGDLFTALNK 397
Y +L+G CF C+Q I G++ +AL K
Sbjct: 10 YQRLYGTRCFSCDQFIEGEVVSALGK 35
Score = 24.4 bits (53), Expect = 5.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 280 CGACRRPIEERVVTALGKHWHVE 302
C +C + IE VV+ALGK +H +
Sbjct: 18 CFSCDQFIEGEVVSALGKTYHPD 40
Score = 23.6 bits (51), Expect = 9.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 331 YHQLFGNLCFVCNQVIGG 348
Y +L+G CF C+Q I G
Sbjct: 10 YQRLYGTRCFSCDQFIEG 27
Score = 23.6 bits (51), Expect = 9.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 549 YHQLFGNLCFVCNQVIGG 566
Y +L+G CF C+Q I G
Sbjct: 10 YQRLYGTRCFSCDQFIEG 27
>d1d8ua_ a.1.1.2 (A:) Non-symbiotic plant hemoglobin {Rice (Oryza
sativa) [TaxId: 4530]}
Length = 165
Score = 28.6 bits (63), Expect = 1.3
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 312 PFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQVIGGDESHYITS---RELTYKKGLGYC 368
FL + + +TH +F C Q+ + + R G
Sbjct: 55 SFLRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHLKYGVG 114
Query: 369 ESHYHQLFGNLCFVCNQVIGGDLFTA-LNKAW 399
++H+ + L + + D+++ + AW
Sbjct: 115 DAHFEVVKFALLDTIKEEVPADMWSPAMKSAW 146
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 25.9 bits (57), Expect = 1.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 9/39 (23%)
Query: 339 CFVCNQVIGGDESHYITSRELTYKKGLGYCESHYHQLFG 377
C C+ ++ G+ YI+ K G+ YCES YH FG
Sbjct: 2 CQTCSVILTGE---YIS------KDGVPYCESDYHAQFG 31
Score = 25.1 bits (55), Expect = 2.3
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 306 CARCEKPFLGHRHYEKKGLAYCETHYHQLFG 336
C C G + K G+ YCE+ YH FG
Sbjct: 2 CQTCSVILTGE-YISKDGVPYCESDYHAQFG 31
Score = 25.1 bits (55), Expect = 2.3
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 420 CARCEKPFLGHRHYEKKGLAYCETHYHQLFG 450
C C G + K G+ YCE+ YH FG
Sbjct: 2 CQTCSVILTGE-YISKDGVPYCESDYHAQFG 31
Score = 25.1 bits (55), Expect = 2.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 539 KNGLAYCETHYHQLFG 554
K+G+ YCE+ YH FG
Sbjct: 16 KDGVPYCESDYHAQFG 31
Score = 24.4 bits (53), Expect = 5.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 487 KKGLAYCETHYHQLFG 502
K G+ YCE+ YH FG
Sbjct: 16 KDGVPYCESDYHAQFG 31
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 43
Score = 26.0 bits (57), Expect = 1.9
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCF 34
C RC + EK V G+ WH+ CF
Sbjct: 18 CPRCGQAVYAAEK-VIGAGKSWHKSCF 43
>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 25.6 bits (56), Expect = 2.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 34 FVCAQCFRPFPGGIFYEFEGRK 55
FVCA C PFP G F G++
Sbjct: 1 FVCAVCRLPFPPGDRVTFNGKE 22
Score = 24.5 bits (53), Expect = 5.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 133 FVCAQCFRPFPGGIFYEFEGE 153
FVCA C PFP G F G+
Sbjct: 1 FVCAVCRLPFPPGDRVTFNGK 21
>d1wiga2 g.39.1.3 (A:33-73) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 25.6 bits (56), Expect = 2.2
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQC 33
C RC + F E++ +WH C
Sbjct: 2 CVRCGQMFAEGEEMYLQGSSIWHPAC 27
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 25.4 bits (56), Expect = 2.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 36 CAQCFRPFPGGIFYEFEGRKYCEHDFHVLFAP 67
C+ C G + GR YC+ F+ LF
Sbjct: 2 CSYCNNKLSLGTYASLHGRIYCKPHFNQLFKS 33
Score = 25.0 bits (55), Expect = 3.0
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 306 CARCEKPFLGHRHYEKKGLAYCETHYHQLFG 336
C+ C + G YC+ H++QLF
Sbjct: 2 CSYCNNKLSLGTYASLHGRIYCKPHFNQLFK 32
Score = 25.0 bits (55), Expect = 3.0
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 420 CARCEKPFLGHRHYEKKGLAYCETHYHQLFG 450
C+ C + G YC+ H++QLF
Sbjct: 2 CSYCNNKLSLGTYASLHGRIYCKPHFNQLFK 32
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 252
Score = 28.1 bits (61), Expect = 2.8
Identities = 28/185 (15%), Positives = 45/185 (24%), Gaps = 11/185 (5%)
Query: 317 RHYEKKGLAYCETHYHQLFGNLCFVCNQVIGGDESHYITSRELTYKKGLGYCESHYHQLF 376
+ E G Y Y L F GG E+ +T T G +
Sbjct: 34 KIAEDLGGPYVWGQYDLLVLPPSFPY----GGMENPCLTFVTPTLLAGDKSLSNVIAH-- 87
Query: 377 GNLCFVCNQVIGGDLFTALNKAWCVHHFACSTLGKHWHVEHFVCARCEKPFLGHRHYEKK 436
+ + W R G +
Sbjct: 88 ---QISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNS 144
Query: 437 GLAYCETH-YHQLFGNLCFVCNQNHTISLHVSSREAVLSSDSSVFGLRHYEKKGL-AYCE 494
+ ETH + +L +L + S+ A+L + G L AY E
Sbjct: 145 VKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVE 204
Query: 495 THYHQ 499
++
Sbjct: 205 KFSYK 209
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 31
Score = 24.7 bits (54), Expect = 3.6
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 7 YCSRCNEGFEPEEKIVNSNGELWHQQCF 34
CS C + E ++ + G ++H +CF
Sbjct: 4 ACSACGQSIPASELVMRAQGNVYHLKCF 31
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 26.4 bits (58), Expect = 4.7
Identities = 6/41 (14%), Positives = 11/41 (26%)
Query: 152 GEFVIGRVIKAMNANWHPKCFRCEHCSKELADLGFIRSQGR 192
G V +V + + + G IR +
Sbjct: 8 GAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDV 48
>d2cy3a_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans,
different strains [TaxId: 876]}
Length = 118
Score = 26.4 bits (57), Expect = 5.1
Identities = 12/65 (18%), Positives = 15/65 (23%), Gaps = 11/65 (16%)
Query: 210 HMCHKCHGLIDDKPLKFRGEVYHPYHFNCTSCGTELNSDAREVKSRPGYTANDMNELYCL 269
CH D K V + +H C C L C
Sbjct: 64 SGCHDSLEFRDKANAKDIKLVENAFHTQCIDCHKALK-----------KDKKPTGPTACG 112
Query: 270 RCHDK 274
+CH
Sbjct: 113 KCHTT 117
>d1wyha2 g.39.1.3 (A:8-34) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 27
Score = 24.2 bits (52), Expect = 5.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCF 34
CS C E P + + G+ WH+ CF
Sbjct: 1 CSACGETVMPGSRKLEYGGQTWHEHCF 27
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 30
Score = 24.3 bits (53), Expect = 5.5
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 280 CGACRRPIEER-VVTALGKHWHVE 302
C C I +R ++ A+ +WH
Sbjct: 5 CAGCGGKIADRFLLYAMDSYWHSR 28
>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Pseudomonas fluorescens [TaxId: 294]}
Length = 203
Score = 26.8 bits (59), Expect = 5.6
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 38 QCF-RPFPGGIFYEFEGRK----YCEHDFHVLFA 66
Q F G +F+EF RK + E +F LF
Sbjct: 156 QIFSETLMGPVFFEFIQRKGDDGFGEGNFKALFE 189
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 30
Score = 24.0 bits (52), Expect = 5.8
Identities = 8/27 (29%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 277 IPICGACRRPIEER-VVTALGKHWHVE 302
+ CG C++ I +R + A+ ++WH +
Sbjct: 3 LLTCGGCQQNIGDRYFLKAIDQYWHED 29
>d1d4ca1 a.138.1.3 (A:1-102) Flavocytochrome c3 (respiratory
fumarate reductase), N-terminal domain {Shewanella
putrefaciens [TaxId: 24]}
Length = 102
Score = 26.0 bits (56), Expect = 6.0
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 22/84 (26%)
Query: 196 HECNAQAKAVGFGKHMCHKCHGLIDDKPLKFRGEVYHPYH------FNCTSCGTELNSDA 249
+ + C CHG + + + P+ CTSC
Sbjct: 22 DKGGVTNDNLTHENGQCVSCHGDLKELAAAAPKDKVSPHKSHLIGEIACTSC-------- 73
Query: 250 REVKSRPGYTANDMNELYCLRCHD 273
+ ++ + YC CH
Sbjct: 74 --------HKGHEKSVAYCDACHS 89
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 24.7 bits (54), Expect = 6.2
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 420 CARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQN 459
CA+C K +K G YC+ Y + FG F Q
Sbjct: 2 CAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQG 41
Score = 24.3 bits (53), Expect = 6.6
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 306 CARCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFVCNQVIG 347
CA+C K +K G YC+ Y + FG F Q G
Sbjct: 2 CAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAG 43
>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 24.0 bits (52), Expect = 7.1
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 271 CHDKMGIPICGACRRPIEERVVTALGKHWHVEHF 304
C++ P C C + + + VT + WH E
Sbjct: 2 CYENKFAPRCARCSKTLTQGGVTYRDQPWHRECL 35
>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein
6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 23.7 bits (51), Expect = 8.9
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 35 VCAQCFRPFPGGIFYEFEGRKYCEH 59
VC+ C G FY E R YCE
Sbjct: 1 VCSTCRAQLRGQHFYAVERRAYCEG 25
>d2cupa2 g.39.1.3 (A:35-65) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 23.4 bits (50), Expect = 9.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 173 RCEHCSKELADLGFIRSQGRALCHEC 198
RC C LA+ F+ + LC++C
Sbjct: 1 RCAKCLHPLANETFVAKDNKILCNKC 26
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 23.5 bits (51), Expect = 9.3
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 305 VCARCEKPFLGHRHYEKKGLAYCETHYHQLF 335
VC C K G R + AYC + L+
Sbjct: 1 VCTACRKQLSGQRFTARDDFAYCLNCFCDLY 31
Score = 23.5 bits (51), Expect = 9.3
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 419 VCARCEKPFLGHRHYEKKGLAYCETHYHQLF 449
VC C K G R + AYC + L+
Sbjct: 1 VCTACRKQLSGQRFTARDDFAYCLNCFCDLY 31
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 35
Score = 23.6 bits (51), Expect = 9.6
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 8 CSRCNEGFEPEEKIVNSNGELWHQQCF 34
C C + P E++ +N +++H CF
Sbjct: 10 CVECQKTVYPMERL-LANQQVFHISCF 35
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 24.4 bits (53), Expect = 9.7
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 305 VCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 336
+C C+K YC++ Y + +G
Sbjct: 1 LCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 32
Score = 24.4 bits (53), Expect = 9.7
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 419 VCARCEKPFLGHRHYEKKGLAYCETHYHQLFG 450
+C C+K YC++ Y + +G
Sbjct: 1 LCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 32
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO,
C-terminal domain {Deinococcus radiodurans [TaxId:
1299]}
Length = 157
Score = 25.8 bits (56), Expect = 9.7
Identities = 10/63 (15%), Positives = 14/63 (22%), Gaps = 1/63 (1%)
Query: 165 ANWHPKCFRCEHCSKELADLGFIRSQGRALCHECNAQAKAVGFGKHMCHKCHGLIDDKPL 224
A P+ RC C G+ LC +C A
Sbjct: 64 AGVIPQTARCARCGAP-DPEHPDPLGGQLLCSKCAALPPYPPAVLDFLRHAVRRTVRASF 122
Query: 225 KFR 227
+
Sbjct: 123 EQP 125
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.141 0.493
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,472,884
Number of extensions: 124820
Number of successful extensions: 821
Number of sequences better than 10.0: 1
Number of HSP's gapped: 796
Number of HSP's successfully gapped: 176
Length of query: 594
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 504
Effective length of database: 1,171,896
Effective search space: 590635584
Effective search space used: 590635584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.8 bits)