Query psy10534
Match_columns 286
No_of_seqs 137 out of 1066
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 20:45:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1600|consensus 100.0 8.3E-98 2E-102 694.3 12.3 244 2-247 77-321 (321)
2 PLN02220 delta-9 acyl-lipid de 100.0 1.1E-81 2.5E-86 590.1 10.4 229 2-240 66-295 (299)
3 COG1398 OLE1 Fatty-acid desatu 100.0 1.5E-75 3.3E-80 535.9 5.1 231 2-240 56-288 (289)
4 cd03505 Delta9-FADS-like The D 100.0 2.1E-69 4.5E-74 474.3 8.7 165 2-230 13-178 (178)
5 PF00487 FA_desaturase: Fatty 99.3 2E-12 4.3E-17 112.6 5.7 61 7-67 18-80 (257)
6 cd01060 Membrane-FADS-like The 99.2 1.6E-11 3.5E-16 98.5 3.6 103 4-197 11-122 (122)
7 cd03513 CrtW_beta-carotene-ket 98.2 1.1E-05 2.4E-10 73.7 9.8 44 159-210 172-221 (225)
8 cd03506 Delta6-FADS-like The D 98.0 8.4E-06 1.8E-10 72.4 5.2 158 24-225 30-204 (204)
9 cd03511 Rhizopine-oxygenase-li 97.7 4.3E-05 9.3E-10 71.1 4.5 42 23-64 73-115 (285)
10 cd03512 Alkane-hydroxylase Alk 97.4 0.00018 4E-09 68.6 4.4 53 147-199 213-275 (314)
11 cd03514 CrtR_beta-carotene-hyd 97.1 0.00058 1.2E-08 61.3 4.1 42 24-65 54-96 (207)
12 PLN02579 sphingolipid delta-4 96.4 0.0095 2E-07 57.3 7.3 43 23-65 103-147 (323)
13 PLN03199 delta6-acyl-lipid des 96.1 0.021 4.6E-07 57.6 8.5 50 177-231 406-455 (485)
14 cd03510 Rhizobitoxine-FADS-lik 96.1 0.0089 1.9E-07 52.3 4.8 42 24-65 51-93 (175)
15 PLN03198 delta6-acyl-lipid des 96.1 0.011 2.3E-07 60.4 6.0 50 177-231 450-499 (526)
16 cd03509 DesA_FADS-like Fatty a 95.4 0.018 4E-07 54.4 4.2 49 155-210 197-246 (288)
17 COG3239 DesA Fatty acid desatu 93.3 0.22 4.8E-06 48.2 6.7 41 24-64 94-134 (343)
18 cd03507 Delta12-FADS-like The 93.2 0.49 1.1E-05 42.8 8.4 41 24-64 63-104 (222)
19 COG5274 CYB5 Cytochrome b invo 89.4 0.068 1.5E-06 47.0 -1.3 40 172-214 2-41 (164)
20 PLN02598 omega-6 fatty acid de 87.8 0.92 2E-05 45.3 5.3 39 24-62 155-194 (421)
21 cd03508 Delta4-sphingolipid-FA 87.7 1.9 4E-05 41.0 7.1 20 178-197 221-240 (289)
22 KOG4232|consensus 82.2 6.1 0.00013 39.7 8.0 194 23-230 173-403 (430)
23 PLN02498 omega-3 fatty acid de 51.7 13 0.00028 37.7 3.0 40 24-63 180-220 (450)
24 PLN02505 omega-6 fatty acid de 49.1 13 0.00029 36.7 2.6 38 25-62 117-155 (381)
25 KOG2987|consensus 42.2 3.9 8.5E-05 38.8 -2.1 64 179-243 248-314 (324)
26 cd03508 Delta4-sphingolipid-FA 41.1 20 0.00043 34.0 2.3 13 189-201 100-112 (289)
27 smart00541 FYRN "FY-rich" doma 33.4 13 0.00028 25.6 -0.2 33 182-214 2-34 (44)
No 1
>KOG1600|consensus
Probab=100.00 E-value=8.3e-98 Score=694.29 Aligned_cols=244 Identities=47% Similarity=0.913 Sum_probs=238.9
Q ss_pred ccccccccccccCCCCCC-CCcccchhHHHHHHHHHhcCCcchhhhhhcccccCCCCCCCCCCCcccchHHhhhhhhhhc
Q psy10534 2 FFSALNRADGLHRPDGGI-RNVVCCTHRIFYFLLCICFQNSVFNWVRDHRVHHKYSETDADPHNSKRGFFFAHVGWLMCR 80 (286)
Q Consensus 2 ~~~~~g~t~g~HR~~~h~-~~~~~~~h~~L~~~gt~a~Qgs~~~Wv~~HR~HHk~sDtd~DPHs~~rGf~~sH~GWll~~ 80 (286)
++|++|||||+||+|+|| +..+.|++.|||+|+++|+||+|++|||+||.||||||||+|||||+||||||||||+|++
T Consensus 77 ~v~glgITag~HRlwsHRSyKa~kpLr~fla~~~~~A~Qg~~~~WvrdHR~HHk~tdTD~DPhn~~rGF~FsHvgWl~~~ 156 (321)
T KOG1600|consen 77 AVGGLGITAGYHRLWSHRSYKAPKPLRYFLAYCNTLAFQGDIIDWVRDHRVHHKFTDTDADPHNPRRGFWFSHVGWLLDK 156 (321)
T ss_pred HHhhceeeeehhhhcccccccCCccHHHHHHHHHHHhccCChhHHHhhhhhhccccccCCCCCCcccchhhhhhhhHhcc
Confidence 579999999999999998 5569999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHhcccCCCccccCCceEEeehhhhHHHHHHHHhhhccccceeEeccchhhHHHHHHHHHHHHHhhhhhhccccc
Q psy10534 81 KHKDVIEKGRMVDMSDVMADPLVRFHEKHFFWFKLVLCFIIPTIVPYYYFGESLLVSVLTMNFFRYILTLNFTWAVNSAA 160 (286)
Q Consensus 81 ~~p~~~~~~~~~d~~DL~~Dp~v~fq~r~y~~l~~~~~~vlP~~i~~~~wg~~~~~a~~v~~~lR~~l~~h~tw~VNS~~ 160 (286)
++|+++++|+++||+||++||+||||+|+|.++++++||+||+++|+++||+++.++|+++ ++|+++++|+||||||+|
T Consensus 157 k~p~~k~~G~~~dvsDL~~dp~v~Fq~k~y~~l~~~~~f~lp~~~p~~~~~~~~~~~~~~~-~~r~~~~lh~TwlVNSaa 235 (321)
T KOG1600|consen 157 KHPQVKECGGRLDVSDLEADPVVRFQRKTYLLLMLFFCFLLPTLGPMYFWGEGMGLAFYVG-LFRYCIVLHATWLVNSAA 235 (321)
T ss_pred CChHHHhhcCcCChhHhhhCceeeehhhhHHHHHHHHHHHHHHhCcceeeeecchhhhhHH-HHHHHHHHhhHHhhhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred ccccCCCCCCCCCCccchHHHHHhcCCCCCCCCCCCCcccccCCCCCccccchHHHHHHHHHhcccccccCCCHHHHHHH
Q psy10534 161 HIWGNKPFDRRIMPAENKLVSILALGEGWHNYHHVFPWDYKAAELGNYSFNITTFFIDFFAKIGWAYDRKQPSATLVRNT 240 (286)
Q Consensus 161 H~~G~rpy~~~~~s~nn~~vallt~GEGwHNnHHafP~dyr~ge~~~~~~D~t~~~I~~l~~LGLa~dlk~~~~~~i~~~ 240 (286)
|+||.||||++++|+||++++++|+|||||||||+||+|||+||. |||+|+|+.+|+++|+||||+|||+|++++|+++
T Consensus 236 H~~G~rp~d~~~~s~nn~~~s~~t~GEgwHNyHH~Fp~dyr~ge~-~y~~d~T~~~I~~~a~lGlA~D~K~~s~~~i~~~ 314 (321)
T KOG1600|consen 236 HIWGSRPYDTNDTSRNNWWVSILTFGEGWHNYHHAFPWDYRHGEE-WYQLDITWYLIDFFAALGLAYDLKTPSEAQIRRM 314 (321)
T ss_pred HHeecccCCCCCCcccceEEEEEEeccccccccccCchhhHhhhH-HhhhCcchHHHHHHHHhhhHhhcCCchHHHHHHH
Confidence 999999999999999999999999999999999999999999966 9999999999999999999999999999999999
Q ss_pred hhhcCCC
Q psy10534 241 ALRHGDG 247 (286)
Q Consensus 241 ~~r~gd~ 247 (286)
+.|.||+
T Consensus 315 ~~~~g~~ 321 (321)
T KOG1600|consen 315 ALRRGDG 321 (321)
T ss_pred HHhccCC
Confidence 9999986
No 2
>PLN02220 delta-9 acyl-lipid desaturase
Probab=100.00 E-value=1.1e-81 Score=590.08 Aligned_cols=229 Identities=26% Similarity=0.453 Sum_probs=206.4
Q ss_pred ccccccccccccCCCCCC-CCcccchhHHHHHHHHHhcCCcchhhhhhcccccCCCCCCCCCCCcccchHHhhhhhhhhc
Q psy10534 2 FFSALNRADGLHRPDGGI-RNVVCCTHRIFYFLLCICFQNSVFNWVRDHRVHHKYSETDADPHNSKRGFFFAHVGWLMCR 80 (286)
Q Consensus 2 ~~~~~g~t~g~HR~~~h~-~~~~~~~h~~L~~~gt~a~Qgs~~~Wv~~HR~HHk~sDtd~DPHs~~rGf~~sH~GWll~~ 80 (286)
+++++|||+|+||+|+|| +.++.|++.+||++|++|+||||++||++||+||+|||||+|||||+||||||||||++.+
T Consensus 66 ~it~lGiT~GyHRl~sHrsfka~~~l~~~la~~g~~a~Qgs~~~Wv~~HR~HH~~sDt~~DPHsp~~Gfw~sH~gWl~~~ 145 (299)
T PLN02220 66 IVTGLSITFSYHRNLAHRSFKLPKWLEYPFAYSALFALQGDPIDWVSTHRFHHQFTDSDRDPHSPIEGFWFSHVLWIFDT 145 (299)
T ss_pred HHHHHHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCccccccCcHHHHhHhhcCc
Confidence 578899999999999998 4558999999999999999999999999999999999999999999999999999999987
Q ss_pred cChhHHHhcccCCCccccCCceEEeehhhhHHHHHHHHhhhccccceeEeccchhhHHHHHHHHHHHHHhhhhhhccccc
Q psy10534 81 KHKDVIEKGRMVDMSDVMADPLVRFHEKHFFWFKLVLCFIIPTIVPYYYFGESLLVSVLTMNFFRYILTLNFTWAVNSAA 160 (286)
Q Consensus 81 ~~p~~~~~~~~~d~~DL~~Dp~v~fq~r~y~~l~~~~~~vlP~~i~~~~wg~~~~~a~~v~~~lR~~l~~h~tw~VNS~~ 160 (286)
+++ .+++++++|++||++||+++||+|+|.+.++++++++ ++||+. ..+.+++++|+++++|+||+|||+|
T Consensus 146 ~~~-~~~~~~~~~~~Dl~~d~~~~~~~~~~~~~~l~~~~~~------~~~gg~--~~~~wg~~~r~~~~~h~tw~VNS~~ 216 (299)
T PLN02220 146 SYI-REKCGGRDNVMDLKQQWFYRFLRKTIGLHILMFWTLL------YLWGGL--PYLTWGVGVGGAIGYHVTWLINSAC 216 (299)
T ss_pred chh-hhhcccccchHHHHhCcchHHHHHHHHHHHHHHHHHH------HHHhHH--HHHHHHHHHHHHHHHhhhhccchhh
Confidence 654 3455677899999999999999999887655555443 356653 2345677899999999999999999
Q ss_pred ccccCCCCCCCCCCccchHHHHHhcCCCCCCCCCCCCcccccCCCCCccccchHHHHHHHHHhcccccccCCCHHHHHHH
Q psy10534 161 HIWGNKPFDRRIMPAENKLVSILALGEGWHNYHHVFPWDYKAAELGNYSFNITTFFIDFFAKIGWAYDRKQPSATLVRNT 240 (286)
Q Consensus 161 H~~G~rpy~~~~~s~nn~~vallt~GEGwHNnHHafP~dyr~ge~~~~~~D~t~~~I~~l~~LGLa~dlk~~~~~~i~~~ 240 (286)
|+||+|||+++|+|+||+++|++|+|||||||||+||+|||+| ++|||+|||+++|++|++||||+|||+|++++++++
T Consensus 217 H~~G~rpy~~~d~srN~~~lallt~GEgwHNnHHafP~sar~G-~~w~~~D~t~~~I~~l~~lGLa~dlk~p~~~~~~~~ 295 (299)
T PLN02220 217 HIWGSRTWKTKDTSRNVWWLSLFTMGESWHNNHHAFESSARQG-LEWWQIDITWYLIRFFEVLGLATDVKLPTEAQKRKM 295 (299)
T ss_pred hcccCCCCCCCCCcchhHHHHHHhccccccccccCCccchhhC-CcCCCcCchHHHHHHHHHhCCcccccCCcHHHHHhH
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999987766554
No 3
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=100.00 E-value=1.5e-75 Score=535.91 Aligned_cols=231 Identities=26% Similarity=0.485 Sum_probs=211.1
Q ss_pred ccccccccccccCCCCCC-CCcccchhHHHHHHHHHhcCCcchhhhhhcccccCCCCCCCCC-CCcccchHHhhhhhhhh
Q psy10534 2 FFSALNRADGLHRPDGGI-RNVVCCTHRIFYFLLCICFQNSVFNWVRDHRVHHKYSETDADP-HNSKRGFFFAHVGWLMC 79 (286)
Q Consensus 2 ~~~~~g~t~g~HR~~~h~-~~~~~~~h~~L~~~gt~a~Qgs~~~Wv~~HR~HHk~sDtd~DP-Hs~~rGf~~sH~GWll~ 79 (286)
.+|++|||+|+||+|||| +++..|++.||+++|++++||++++|+++||.||+|||||.|| |+.+||||||||||++.
T Consensus 56 ~~~~igIt~G~HRl~sHRa~~~~k~Le~~la~~g~l~~~G~~~~W~~~HR~HHr~tDTd~DPh~~~~kGfw~shigWm~~ 135 (289)
T COG1398 56 LIGGIGITLGLHRLWSHRAFKAHKWLEYVLAFWGALTTQGPAIEWVGIHRKHHRKTDTDQDPHYDSFKGFWWSHIGWMLL 135 (289)
T ss_pred HhccceeeeehhhhhhhhhcccchHHHHHHHHHHHhhcCCCceeHHHHHHHhhcccCCCCCCCccccccchhhhcceeee
Confidence 378999999999999998 6668999999999999999999999999999999999999999 66689999999999998
Q ss_pred ccChhHHHhcccCCCccccCCceEEeehhhhHHHHHHHHhhhccccceeEeccchhhHHHHHHHHHHHHHhhhhhhcccc
Q psy10534 80 RKHKDVIEKGRMVDMSDVMADPLVRFHEKHFFWFKLVLCFIIPTIVPYYYFGESLLVSVLTMNFFRYILTLNFTWAVNSA 159 (286)
Q Consensus 80 ~~~p~~~~~~~~~d~~DL~~Dp~v~fq~r~y~~l~~~~~~vlP~~i~~~~wg~~~~~a~~v~~~lR~~l~~h~tw~VNS~ 159 (286)
.+. +.....+..|+.+|+.++||+|++...+++..+++|.++. +++|+... ++++++.|+++++|+||+|||+
T Consensus 136 ~~~----~~~~r~~~~~~~kd~~~~~~~r~~~~~~~l~~i~~~l~~~-~~~gg~~g--l~~~gv~r~~~~~hat~~VNsl 208 (289)
T COG1398 136 YSA----EAKDRETIQKLGKDIPLDWQHRNLYLIALLMQIVLPLFIG-YALGGWLG--LIWGGVQRLVLVQHATWCVNSL 208 (289)
T ss_pred cch----hhcChhHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhcchhH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 654 2223345679999999999999999999999999995544 46776543 7888999999999999999999
Q ss_pred cccccCCCCCCCCCCccchHHHHHhcCCCCCCCCCCCCcccccCCCCCccccchHHHHHHHHHhcccccccCCCHHHHHH
Q psy10534 160 AHIWGNKPFDRRIMPAENKLVSILALGEGWHNYHHVFPWDYKAAELGNYSFNITTFFIDFFAKIGWAYDRKQPSATLVRN 239 (286)
Q Consensus 160 ~H~~G~rpy~~~~~s~nn~~vallt~GEGwHNnHHafP~dyr~ge~~~~~~D~t~~~I~~l~~LGLa~dlk~~~~~~i~~ 239 (286)
||.+|+||||++|+|||++++||+|+|||||||||+||.|||+| ..|||+|||||+|++|+.||||+++|.+|+..|.+
T Consensus 209 ~H~~Gyr~fd~~d~arN~ww~al~t~GEgwHNnHHafp~~ar~g-~kWwe~D~tw~~I~l~s~lGLA~~~k~~p~~~~~~ 287 (289)
T COG1398 209 GHYIGYRPFDCRDTARNCWWVALVTFGEGWHNNHHAFPNSARNG-LKWWEFDVTWWIIKLLSLLGLAKVVKLAPKARIGE 287 (289)
T ss_pred hhhhcccccCCCCCccceeEEEEeecccccccccccCcchhhcC-ceeEEeccHHHHHHHHHHHhHHHhcccCcHHHHhc
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999988876
Q ss_pred H
Q psy10534 240 T 240 (286)
Q Consensus 240 ~ 240 (286)
.
T Consensus 288 ~ 288 (289)
T COG1398 288 G 288 (289)
T ss_pred c
Confidence 4
No 4
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=100.00 E-value=2.1e-69 Score=474.30 Aligned_cols=165 Identities=42% Similarity=0.760 Sum_probs=159.7
Q ss_pred ccccccccccccCCCCCC-CCcccchhHHHHHHHHHhcCCcchhhhhhcccccCCCCCCCCCCCcccchHHhhhhhhhhc
Q psy10534 2 FFSALNRADGLHRPDGGI-RNVVCCTHRIFYFLLCICFQNSVFNWVRDHRVHHKYSETDADPHNSKRGFFFAHVGWLMCR 80 (286)
Q Consensus 2 ~~~~~g~t~g~HR~~~h~-~~~~~~~h~~L~~~gt~a~Qgs~~~Wv~~HR~HHk~sDtd~DPHs~~rGf~~sH~GWll~~ 80 (286)
+++++|||+|+||+++|| +.++.+++.+|+++|++|+||||++|+++||+||+|||||+|||||+||||||||||+
T Consensus 13 ~~~~lgit~G~HRl~aHrsfk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sDt~~DPhs~~~gf~~~h~gW~--- 89 (178)
T cd03505 13 LLTGLGITAGYHRLWAHRSFKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRYSDTDGDPHSPKRGFWFSHVGWL--- 89 (178)
T ss_pred HHHHHHHHHHHHHHHhhccCcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcccCCCCCCCCcccCcHHHHHhhH---
Confidence 467899999999999998 5558899999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHhcccCCCccccCCceEEeehhhhHHHHHHHHhhhccccceeEeccchhhHHHHHHHHHHHHHhhhhhhccccc
Q psy10534 81 KHKDVIEKGRMVDMSDVMADPLVRFHEKHFFWFKLVLCFIIPTIVPYYYFGESLLVSVLTMNFFRYILTLNFTWAVNSAA 160 (286)
Q Consensus 81 ~~p~~~~~~~~~d~~DL~~Dp~v~fq~r~y~~l~~~~~~vlP~~i~~~~wg~~~~~a~~v~~~lR~~l~~h~tw~VNS~~ 160 (286)
++++|+++++|+||+|||+|
T Consensus 90 ------------------------------------------------------------~~~~r~~~~~h~t~~VNs~~ 109 (178)
T cd03505 90 ------------------------------------------------------------GGLLRIVLVLHATWLVNSLA 109 (178)
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999
Q ss_pred ccccCCCCCCCCCCccchHHHHHhcCCCCCCCCCCCCcccccCCCCCccccchHHHHHHHHHhccccccc
Q psy10534 161 HIWGNKPFDRRIMPAENKLVSILALGEGWHNYHHVFPWDYKAAELGNYSFNITTFFIDFFAKIGWAYDRK 230 (286)
Q Consensus 161 H~~G~rpy~~~~~s~nn~~vallt~GEGwHNnHHafP~dyr~ge~~~~~~D~t~~~I~~l~~LGLa~dlk 230 (286)
|++|+|||+++|+|+||++++++|+|||||||||+||+|||+| ++|||+|||+++|++|++||||+|||
T Consensus 110 H~~G~r~~~~~~~s~n~~~~~llt~GEg~HNnHHafP~~ar~g-~~~~~~D~t~~~I~~l~~lGla~~lk 178 (178)
T cd03505 110 HMWGYRPYDTRDTSRNNWWVALLTFGEGWHNNHHAFPGDARNG-LKWYQIDPTKWVIRLLEKLGLAWDLK 178 (178)
T ss_pred HhcCCCCCCCCCCchhhHHHHHHHccccccccccCCcchhhhC-CcCCCcCchHHHHHHHHHcCCcccCC
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999997
No 5
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.32 E-value=2e-12 Score=112.61 Aligned_cols=61 Identities=23% Similarity=0.269 Sum_probs=46.7
Q ss_pred cccccccCCCCCC-CCcccchhHHHHHHHHHhcCCcchhhhhhcccccCCCCCCC-CCCCccc
Q psy10534 7 NRADGLHRPDGGI-RNVVCCTHRIFYFLLCICFQNSVFNWVRDHRVHHKYSETDA-DPHNSKR 67 (286)
Q Consensus 7 g~t~g~HR~~~h~-~~~~~~~h~~L~~~gt~a~Qgs~~~Wv~~HR~HHk~sDtd~-DPHs~~r 67 (286)
+.+.++++-.+|. ....-+..+++..+.++..+++...|...|+.||+++++++ ||.+...
T Consensus 18 ~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~ 80 (257)
T PF00487_consen 18 ARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHYTNNPDRDPDSWTR 80 (257)
T ss_pred HHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccccCCccccCccchh
Confidence 3444455555664 34455677788877777789999999999999999999888 9999865
No 6
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.17 E-value=1.6e-11 Score=98.45 Aligned_cols=103 Identities=33% Similarity=0.463 Sum_probs=81.5
Q ss_pred ccccccccccCCCCCC-CCcccchhHHHHHHHHHhcCCcchhhhhhcccccCCCCCC-CCCCCcccchHHhhhhhhhhcc
Q psy10534 4 SALNRADGLHRPDGGI-RNVVCCTHRIFYFLLCICFQNSVFNWVRDHRVHHKYSETD-ADPHNSKRGFFFAHVGWLMCRK 81 (286)
Q Consensus 4 ~~~g~t~g~HR~~~h~-~~~~~~~h~~L~~~gt~a~Qgs~~~Wv~~HR~HHk~sDtd-~DPHs~~rGf~~sH~GWll~~~ 81 (286)
++++.+..+|+. +|+ ...+.|.-+++..+.++....++..|...|..||++++++ +||..+
T Consensus 11 ~~~~~~~~~H~~-~H~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~H~~HH~~~~~~~~D~~~~---------------- 73 (122)
T cd01060 11 GGLGLTVLAHEL-GHRSFFRSRWLNRLLGALLGLALGGSYGWWRRSHRRHHRYTNTPGKDPDSA---------------- 73 (122)
T ss_pred HHHHHHHHHHHH-hhhhhhccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCcCCCCCCCccc----------------
Confidence 344778889997 887 3334555555554444488999999999999999999988 999999
Q ss_pred ChhHHHhcccCCCccccCCceEEeehhhhHHHHHHHHhhhccccceeEeccchhhHHHHHHHHHHHHHhhhhhhcccccc
Q psy10534 82 HKDVIEKGRMVDMSDVMADPLVRFHEKHFFWFKLVLCFIIPTIVPYYYFGESLLVSVLTMNFFRYILTLNFTWAVNSAAH 161 (286)
Q Consensus 82 ~p~~~~~~~~~d~~DL~~Dp~v~fq~r~y~~l~~~~~~vlP~~i~~~~wg~~~~~a~~v~~~lR~~l~~h~tw~VNS~~H 161 (286)
+|++.|
T Consensus 74 --------------------------------------------------------------------------~~~~~H 79 (122)
T cd01060 74 --------------------------------------------------------------------------VNYLEH 79 (122)
T ss_pred --------------------------------------------------------------------------cchHhh
Confidence 778888
Q ss_pred cccCCCCCCC-------CCCccchHHHHHhcCCCCCCCCCCCC
Q psy10534 162 IWGNKPFDRR-------IMPAENKLVSILALGEGWHNYHHVFP 197 (286)
Q Consensus 162 ~~G~rpy~~~-------~~s~nn~~vallt~GEGwHNnHHafP 197 (286)
.....+...+ +.+.+.++..+++.|+++|+.||.||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~H~~HHl~P 122 (122)
T cd01060 80 YGGDRPFDTDGEWLRTTDNSRNGWLNLLLTGGLGYHNEHHLFP 122 (122)
T ss_pred cCCCCCcccccccccccccCcccHHHHHHhcccccccccccCc
Confidence 8766665543 35678888899999999999999998
No 7
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=98.17 E-value=1.1e-05 Score=73.73 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=35.7
Q ss_pred ccccccCCCCCCCCCCcc---chHHHHHh---cCCCCCCCCCCCCcccccCCCCCccc
Q psy10534 159 AAHIWGNKPFDRRIMPAE---NKLVSILA---LGEGWHNYHHVFPWDYKAAELGNYSF 210 (286)
Q Consensus 159 ~~H~~G~rpy~~~~~s~n---n~~vallt---~GEGwHNnHHafP~dyr~ge~~~~~~ 210 (286)
+.|.-+.+|++...+++. +++++++| || .|+-||.||. .-||++
T Consensus 172 lpH~~~~~~~~~~~~a~~~~~~~~~~~l~c~~fg--yH~eHH~fP~------~Pw~~L 221 (225)
T cd03513 172 LPHRPGRGGFADRHRARSSRLSPVLSFLTCYHFG--YHHEHHLSPS------TPWWRL 221 (225)
T ss_pred cCCCCCCCCCCCcccceecCccHHHHHHHHHhcC--cchhhccCCC------CCcccC
Confidence 899999999998766665 68899988 76 9999999993 456654
No 8
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=97.99 E-value=8.4e-06 Score=72.37 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=88.5
Q ss_pred cchhHHHHHHHHHhcCCcchhhhhhcccccCCCCC-CCCCCCcccchHHhhhhhhhhccChhHHHhcccCCCccccCCce
Q psy10534 24 CCTHRIFYFLLCICFQNSVFNWVRDHRVHHKYSET-DADPHNSKRGFFFAHVGWLMCRKHKDVIEKGRMVDMSDVMADPL 102 (286)
Q Consensus 24 ~~~h~~L~~~gt~a~Qgs~~~Wv~~HR~HHk~sDt-d~DPHs~~rGf~~sH~GWll~~~~p~~~~~~~~~d~~DL~~Dp~ 102 (286)
.+.-+++..+.......|..+|-..|..||++++. +.||--.....+.. .++.. ..|....+.
T Consensus 30 ~~~n~~~g~~~~~~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~~~~~~~--------~~~~~--------~~~~~~~~~ 93 (204)
T cd03506 30 RWLNKLLGLTVGNLLGASAGWWKNKHNVHHAYTNILGHDPDIDTLPLLAR--------SEPAF--------GKDQKKRFL 93 (204)
T ss_pred chHHHHHHHHHHhccCCCHHHHHHHHhhhcCcCCCCCCCCCCCcCceEEe--------ccccc--------ccchHHHHH
Confidence 45666777766667789999999999999999984 58998765543321 11110 123333445
Q ss_pred EEeehhhhHHHHHHH--HhhhccccceeEeccchhhHHHHHHHHHHHHHhhhhhhcccccccccCCCC----CCCC----
Q psy10534 103 VRFHEKHFFWFKLVL--CFIIPTIVPYYYFGESLLVSVLTMNFFRYILTLNFTWAVNSAAHIWGNKPF----DRRI---- 172 (286)
Q Consensus 103 v~fq~r~y~~l~~~~--~~vlP~~i~~~~wg~~~~~a~~v~~~lR~~l~~h~tw~VNS~~H~~G~rpy----~~~~---- 172 (286)
.++|..++++++.++ .+++|.++. + +.+. ++-++.|..=..++ ++.+
T Consensus 94 ~~~q~~~~~~~~~~~~~~~~~~~~~~---------------~-----~~l~---~~~~~~H~~~~~~~~~~~~~~~w~~~ 150 (204)
T cd03506 94 HRYQHFYFFPLLALLLLAFLVVQLAG---------------G-----LWLA---VVFQLNHFGMPVEDPPGESKNDWLER 150 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------h-----hhhh---eEeecccccccccCCCCCcccCHHHH
Confidence 667777666553332 222221111 0 0111 13334454222222 1111
Q ss_pred ---CCc---cchHHHHHhcCCCCCCCCCCCCcccccCCCCCccccchHHHHHHHHHhcc
Q psy10534 173 ---MPA---ENKLVSILALGEGWHNYHHVFPWDYKAAELGNYSFNITTFFIDFFAKIGW 225 (286)
Q Consensus 173 ---~s~---nn~~vallt~GEGwHNnHHafP~dyr~ge~~~~~~D~t~~~I~~l~~LGL 225 (286)
+++ +++++..++.|-+.|.-||.||+-.+.- + --....+=+.+++.|+
T Consensus 151 q~~tt~~~~~~~~~~~l~ggln~qieHHLfP~ip~~~-l----~~~~~~v~~~~~~~gv 204 (204)
T cd03506 151 QVLTTRNITGSPFLDWLHGGLNYQIEHHLFPTMPRHN-Y----PKVAPLVRELCKKHGL 204 (204)
T ss_pred HHhCcccCCCCCHHHHHhcchhhHHHHhcCCCchhhh-H----HHHHHHHHHHHHHhCc
Confidence 122 3689999999999999999999764432 1 2333344455666553
No 9
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=97.67 E-value=4.3e-05 Score=71.08 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=33.1
Q ss_pred ccchhHHHHHHHHHhcCCcchhhhhhcccccCCC-CCCCCCCC
Q psy10534 23 VCCTHRIFYFLLCICFQNSVFNWVRDHRVHHKYS-ETDADPHN 64 (286)
Q Consensus 23 ~~~~h~~L~~~gt~a~Qgs~~~Wv~~HR~HHk~s-Dtd~DPHs 64 (286)
..|.-+++..+.++....+...|...|..||+++ |++.||-.
T Consensus 73 ~~~~N~~~g~l~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~ 115 (285)
T cd03511 73 TRWLNDAVGQIAGLMILLPPDFFRWSHARHHRYTQIPGRDPEL 115 (285)
T ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCcCCCCCCCCC
Confidence 3566677777666777788899999999999999 56688744
No 10
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=97.37 E-value=0.00018 Score=68.59 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=35.6
Q ss_pred HHHhhhhhhcccccccccCCC------CCCC--CCCc--cchHHHHHhcCCCCCCCCCCCCcc
Q psy10534 147 ILTLNFTWAVNSAAHIWGNKP------FDRR--IMPA--ENKLVSILALGEGWHNYHHVFPWD 199 (286)
Q Consensus 147 ~l~~h~tw~VNS~~H~~G~rp------y~~~--~~s~--nn~~vallt~GEGwHNnHHafP~d 199 (286)
++..-..-++|.+-|.==.|. ||.- ..|- |+....++++-=+.|-.||++|.-
T Consensus 213 ~~g~~~l~~~nY~EHyGL~r~~~~~gr~e~~~~~hSWNs~~~~~n~l~~nl~rHsdHH~~p~~ 275 (314)
T cd03512 213 FYAKSLLELVNYIEHYGLLRKKLANGRYEPVGPRHSWNSNHIVSNLLLFNLQRHSDHHAHPTR 275 (314)
T ss_pred HHHHHHHHHHHHHHhcCCccccCCCCccccCCCccCcCcCcHHHHHHHHhcchhhhhccCCCC
Confidence 455556667899999722221 2111 1233 467899999999999999999954
No 11
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=97.06 E-value=0.00058 Score=61.30 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=29.7
Q ss_pred cchhHHHHHHHHHhcCCcchhhhhhcccccCCCCCC-CCCCCc
Q psy10534 24 CCTHRIFYFLLCICFQNSVFNWVRDHRVHHKYSETD-ADPHNS 65 (286)
Q Consensus 24 ~~~h~~L~~~gt~a~Qgs~~~Wv~~HR~HHk~sDtd-~DPHs~ 65 (286)
.|.-+++..+.++..-.|...|...|..||+++.++ .||-..
T Consensus 54 ~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~ 96 (207)
T cd03514 54 RWINELIGHVSAFFLGFPFPVFRRVHMQHHAHTNDPEKDPDHF 96 (207)
T ss_pred ccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCcCcCCcCccHH
Confidence 355555554444544568889999999999999864 887544
No 12
>PLN02579 sphingolipid delta-4 desaturase
Probab=96.41 E-value=0.0095 Score=57.35 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=28.8
Q ss_pred ccchhHHHHHHHHH-hcCCcchhhhhhcccccCCCC-CCCCCCCc
Q psy10534 23 VCCTHRIFYFLLCI-CFQNSVFNWVRDHRVHHKYSE-TDADPHNS 65 (286)
Q Consensus 23 ~~~~h~~L~~~gt~-a~Qgs~~~Wv~~HR~HHk~sD-td~DPHs~ 65 (286)
.-|.-++++.+..+ .+.....+|-+.|..||+++- .+.||--+
T Consensus 103 ~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~Di~ 147 (323)
T PLN02579 103 TPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDMDIP 147 (323)
T ss_pred CHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCCCCC
Confidence 35566677765544 444445579999999999995 34566655
No 13
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=96.14 E-value=0.021 Score=57.62 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=39.0
Q ss_pred chHHHHHhcCCCCCCCCCCCCcccccCCCCCccccchHHHHHHHHHhcccccccC
Q psy10534 177 NKLVSILALGEGWHNYHHVFPWDYKAAELGNYSFNITTFFIDFFAKIGWAYDRKQ 231 (286)
Q Consensus 177 n~~vallt~GEGwHNnHHafP~dyr~ge~~~~~~D~t~~~I~~l~~LGLa~dlk~ 231 (286)
++++..++-|=-.+==||-||.-.|.- + --+...+-++|++-|+-|....
T Consensus 406 s~~~~wf~GGLN~QIEHHLFP~mp~~~-y----~~i~piVk~~C~k~glpY~~~~ 455 (485)
T PLN03199 406 QAFVDWFCGGLQYQVDHHLFPMLPRHN-I----AKCHALVESFCKEWGVKYHEAD 455 (485)
T ss_pred chHHHHHhccchhhhhhhcCCCCchhh-H----HhhhHHHHHHHHHhCCCccccC
Confidence 568888887765555699999887664 3 3567788999999999998665
No 14
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=96.08 E-value=0.0089 Score=52.34 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=30.9
Q ss_pred cchhHHHH-HHHHHhcCCcchhhhhhcccccCCCCCCCCCCCc
Q psy10534 24 CCTHRIFY-FLLCICFQNSVFNWVRDHRVHHKYSETDADPHNS 65 (286)
Q Consensus 24 ~~~h~~L~-~~gt~a~Qgs~~~Wv~~HR~HHk~sDtd~DPHs~ 65 (286)
-+.-+++. ++.++..-.+...|-..|..||+++.+++||--.
T Consensus 51 ~~~N~~~g~~~~~~p~~~~~~~~r~~H~~HH~~~~~~~Dpd~~ 93 (175)
T cd03510 51 RRLNDFLGNWLAAVPIFQSLAAYRRSHLKHHRHLGTEDDPDLA 93 (175)
T ss_pred ccHHHHHHHHHHHhhhhCCHHHHHHHHHHHhCccCCCCCCcHH
Confidence 35555665 3444444557779999999999999999998765
No 15
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=96.07 E-value=0.011 Score=60.44 Aligned_cols=50 Identities=24% Similarity=0.262 Sum_probs=40.9
Q ss_pred chHHHHHhcCCCCCCCCCCCCcccccCCCCCccccchHHHHHHHHHhcccccccC
Q psy10534 177 NKLVSILALGEGWHNYHHVFPWDYKAAELGNYSFNITTFFIDFFAKIGWAYDRKQ 231 (286)
Q Consensus 177 n~~vallt~GEGwHNnHHafP~dyr~ge~~~~~~D~t~~~I~~l~~LGLa~dlk~ 231 (286)
++++..++-|=..|==||-||.-.|.- + -.+...+-.++++-|+-|..+.
T Consensus 450 ~~~~~wf~GGLN~QiEHHLFP~iP~~~-l----~~i~piVk~~C~k~GlpY~~~~ 499 (526)
T PLN03198 450 NIFNDWFTGGLNRQIEHHLFPTMPRHN-L----NKIAPQVEAFCIKHGLVYEDVS 499 (526)
T ss_pred chHHHHhhcCCcccchhhcCCCCchhh-H----HHHhHHHHHHHHHcCCCCCCCC
Confidence 578999999999999999999876554 2 2466678889999999999774
No 16
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=95.36 E-value=0.018 Score=54.36 Aligned_cols=49 Identities=22% Similarity=0.292 Sum_probs=31.8
Q ss_pred hcccccccccCCCCCCCCCC-ccchHHHHHhcCCCCCCCCCCCCcccccCCCCCccc
Q psy10534 155 AVNSAAHIWGNKPFDRRIMP-AENKLVSILALGEGWHNYHHVFPWDYKAAELGNYSF 210 (286)
Q Consensus 155 ~VNS~~H~~G~rpy~~~~~s-~nn~~vallt~GEGwHNnHHafP~dyr~ge~~~~~~ 210 (286)
+-+-.-|.++..+-. +..- .-++++.++++.-+.|.=||.+| + .-||.+
T Consensus 197 ~~~~~Eh~~~~~~~~-rs~~~~~~~~~~~l~~ninyH~~HH~~P-----~-vP~y~L 246 (288)
T cd03509 197 IRTFLEHRAHERPRG-RTVINEAGGPLRLLFLNNNLHVVHHDLP-----T-LPWYDL 246 (288)
T ss_pred hchHhhccCCCCccC-CceeeeCcHHHHHHHhcCCchHhhcCCC-----C-CCcccH
Confidence 345555776654432 1111 12567889999999999999999 3 556654
No 17
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=93.31 E-value=0.22 Score=48.19 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=29.1
Q ss_pred cchhHHHHHHHHHhcCCcchhhhhhcccccCCCCCCCCCCC
Q psy10534 24 CCTHRIFYFLLCICFQNSVFNWVRDHRVHHKYSETDADPHN 64 (286)
Q Consensus 24 ~~~h~~L~~~gt~a~Qgs~~~Wv~~HR~HHk~sDtd~DPHs 64 (286)
-|.-.++.-+.+...-.++..|=..|..||+++.+++||..
T Consensus 94 r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~~~~~d~~ 134 (343)
T COG3239 94 RWINDLIGHLAAALLLAPPVFWRISHNQHHAHTNILDDDPE 134 (343)
T ss_pred hhHHHHHHHHHHHHHhcChhhhhhhHHHhhcccCCCCCCHH
Confidence 34444555444444447788888889999999998888843
No 18
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=93.18 E-value=0.49 Score=42.83 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=28.2
Q ss_pred cchhHHHHHHHHHhcCCcchhhhhhcccccCCCCC-CCCCCC
Q psy10534 24 CCTHRIFYFLLCICFQNSVFNWVRDHRVHHKYSET-DADPHN 64 (286)
Q Consensus 24 ~~~h~~L~~~gt~a~Qgs~~~Wv~~HR~HHk~sDt-d~DPHs 64 (286)
.+.-+++..+..+....+...|...|..||+++.+ ++||--
T Consensus 63 ~~~N~~~g~~~~~~~~~p~~~w~~~H~~HH~~~~~~~~D~~~ 104 (222)
T cd03507 63 RRLNDIVGHILHSPLLVPYHSWRISHNRHHAHTGNLEGDEVW 104 (222)
T ss_pred hhHHHHHHHHHHHHHhCChHHHHHHHHHHHhccCCCCCCCcc
Confidence 34555555443444447888999999999999865 677544
No 19
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=89.40 E-value=0.068 Score=46.97 Aligned_cols=40 Identities=10% Similarity=-0.205 Sum_probs=36.7
Q ss_pred CCCccchHHHHHhcCCCCCCCCCCCCcccccCCCCCccccchH
Q psy10534 172 IMPAENKLVSILALGEGWHNYHHVFPWDYKAAELGNYSFNITT 214 (286)
Q Consensus 172 ~~s~nn~~vallt~GEGwHNnHHafP~dyr~ge~~~~~~D~t~ 214 (286)
.++++....++-+.||| ||||.+|.|+|+. ..|++.|++.
T Consensus 2 ~s~~~~~~~~l~~~~~~--~~~~~~~~d~~~~-~~~~~~~~~~ 41 (164)
T COG5274 2 ASKTSEKCVILSDGPKY--TNKLYAGKDHAAL-DWDSLVQEHA 41 (164)
T ss_pred CcccccceEEEeecCCc--ceeeecCccHHHH-hHHHhhcchh
Confidence 35778889999999999 9999999999999 8899999999
No 20
>PLN02598 omega-6 fatty acid desaturase
Probab=87.76 E-value=0.92 Score=45.35 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=27.8
Q ss_pred cchhHHHHHHHHHhcCCcchhhhhhcccccCCCC-CCCCC
Q psy10534 24 CCTHRIFYFLLCICFQNSVFNWVRDHRVHHKYSE-TDADP 62 (286)
Q Consensus 24 ~~~h~~L~~~gt~a~Qgs~~~Wv~~HR~HHk~sD-td~DP 62 (286)
.|.-.++..+..+..--+...|-..|+.||+++. .+.||
T Consensus 155 ~~lN~~vG~~~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~ 194 (421)
T PLN02598 155 QLVEDIVGTIAFTPLIYPFEPWRIKHNTHHAHTNKLVMDT 194 (421)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccCcCCCCCCC
Confidence 4555555544343445788999999999999996 56775
No 21
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=87.75 E-value=1.9 Score=40.98 Aligned_cols=20 Identities=40% Similarity=0.811 Sum_probs=18.4
Q ss_pred hHHHHHhcCCCCCCCCCCCC
Q psy10534 178 KLVSILALGEGWHNYHHVFP 197 (286)
Q Consensus 178 ~~vallt~GEGwHNnHHafP 197 (286)
.++.++++.-|.|+=||.||
T Consensus 221 ~~~~~~~~n~~yH~~HH~~p 240 (289)
T cd03508 221 GPLNLLTFNVGYHNEHHDFP 240 (289)
T ss_pred HHHHHHhhccChHHHhcCCC
Confidence 46789999999999999999
No 22
>KOG4232|consensus
Probab=82.23 E-value=6.1 Score=39.68 Aligned_cols=194 Identities=18% Similarity=0.187 Sum_probs=97.9
Q ss_pred ccchhHHHHHHHHHhcCCcchhhhhhcccccCCCCC-CCCCCCcccchHHhhhhhhhhccChhHHHhcc--cCCCccccC
Q psy10534 23 VCCTHRIFYFLLCICFQNSVFNWVRDHRVHHKYSET-DADPHNSKRGFFFAHVGWLMCRKHKDVIEKGR--MVDMSDVMA 99 (286)
Q Consensus 23 ~~~~h~~L~~~gt~a~Qgs~~~Wv~~HR~HHk~sDt-d~DPHs~~rGf~~sH~GWll~~~~p~~~~~~~--~~d~~DL~~ 99 (286)
+.|-|-+=++.+..--..|.-||...|-.||.++.- +.||=.-..- .+ +-| .++..+++| .....+-++
T Consensus 173 ~~wN~~~~~fv~n~L~G~sa~WW~~~H~~HHa~pN~~~~DpDi~~~P-~f--l~g-----~~~~~~~~k~krk~~~~~~q 244 (430)
T KOG4232|consen 173 SKWNHLAQKFVGNHLKGFSAAWWKSHHNQHHAAPNSLDKDPDIDFEP-AF--LLG-----DPNSHEYGKKKRKYTPYPEQ 244 (430)
T ss_pred ccHHHHHHHHHhhhcccccHHHHHHHHhhhhccCccCCCCccccccc-hh--hhC-----CCchhhhcccceeEeecccc
Confidence 468787778888888888999999999999999863 5666543222 11 122 222122222 112222222
Q ss_pred CceEEeehhhhHHHHHHH--------------------HhhhccccceeEeccchhhHHHHHH-HHHHHHHhhhhhhccc
Q psy10534 100 DPLVRFHEKHFFWFKLVL--------------------CFIIPTIVPYYYFGESLLVSVLTMN-FFRYILTLNFTWAVNS 158 (286)
Q Consensus 100 Dp~v~fq~r~y~~l~~~~--------------------~~vlP~~i~~~~wg~~~~~a~~v~~-~lR~~l~~h~tw~VNS 158 (286)
.-++..+.-.+..++.+- .+.+|..+. +.|+.++...++... .+|+....-..|.+=-
T Consensus 245 h~yf~~~~~p~l~~~~~~~~~~~~~~~~~~w~Dl~~~~~~~~~~~i~-~~~~~~~~~~~~L~~w~~r~~~~~~s~~v~l~ 323 (430)
T KOG4232|consen 245 HLYFFLIGPPFLRLMWFQQSIIFVQTNLLLWYDLYWPDRFYLRAFIY-LHWGWGLLLLSCLPNWPIRFLFSSWSFWVTLT 323 (430)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHhHHHHHHHhhhhhhHHHhhHHH-hcchhhhHHHHhccCchHHHHHHHHHHHHHHh
Confidence 211111111111111110 011233332 245543332221111 4455444444444413
Q ss_pred cccc----ccCCC----CC-----CCCCCccchHHHHHhcCCCCCCCCCCCCcccccCCCCCccccchHHHHHHHHHhcc
Q psy10534 159 AAHI----WGNKP----FD-----RRIMPAENKLVSILALGEGWHNYHHVFPWDYKAAELGNYSFNITTFFIDFFAKIGW 225 (286)
Q Consensus 159 ~~H~----~G~rp----y~-----~~~~s~nn~~vallt~GEGwHNnHHafP~dyr~ge~~~~~~D~t~~~I~~l~~LGL 225 (286)
+.|. .-..+ |- +..+=....+...+..|=+.|==||-||.--|+- +. -+.-.+..+|++-|+
T Consensus 324 ~nH~~~~i~~~~~i~~dw~~~Q~~tT~n~~~~~f~dwl~ghln~qieHHLFPtmpr~n-L~----~v~P~Vke~c~k~~l 398 (430)
T KOG4232|consen 324 MNHIDPEIYHEGDIRRDWFSLQLATTINVGPSKFSDWLSGHLNFQIEHHLFPTMPRHN-LN----KVAPLVKELCKKHGL 398 (430)
T ss_pred hhccchhhccCCcchhhHHHHHHhhccccCchhHHHHHHhhhhhhHHhhcCCCCCccc-hH----HHHHHHHHHHHHcCC
Confidence 3343 11111 11 0111123346666776778888899999887775 32 455678999999999
Q ss_pred ccccc
Q psy10534 226 AYDRK 230 (286)
Q Consensus 226 a~dlk 230 (286)
.+-.+
T Consensus 399 ~y~~~ 403 (430)
T KOG4232|consen 399 PYREK 403 (430)
T ss_pred ccccc
Confidence 88765
No 23
>PLN02498 omega-3 fatty acid desaturase
Probab=51.71 E-value=13 Score=37.68 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=29.1
Q ss_pred cchhHHHHHHHHHhcCCcchhhhhhcccccCCCC-CCCCCC
Q psy10534 24 CCTHRIFYFLLCICFQNSVFNWVRDHRVHHKYSE-TDADPH 63 (286)
Q Consensus 24 ~~~h~~L~~~gt~a~Qgs~~~Wv~~HR~HHk~sD-td~DPH 63 (286)
.|.-.++..+..+...-+...|-..|+.||+++. .+.||-
T Consensus 180 k~lNd~vG~ll~~~ll~py~~Wr~sH~~HH~~Tn~~e~D~~ 220 (450)
T PLN02498 180 PKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDES 220 (450)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 4555566655555556888999999999999986 456653
No 24
>PLN02505 omega-6 fatty acid desaturase
Probab=49.06 E-value=13 Score=36.68 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHhcCCcchhhhhhcccccCCCCC-CCCC
Q psy10534 25 CTHRIFYFLLCICFQNSVFNWVRDHRVHHKYSET-DADP 62 (286)
Q Consensus 25 ~~h~~L~~~gt~a~Qgs~~~Wv~~HR~HHk~sDt-d~DP 62 (286)
|.-.++..+-......+...|-..|+.||+++.. +.||
T Consensus 117 ~lN~~vG~i~~~~ll~p~~~Wr~~H~~HH~~tn~~~~D~ 155 (381)
T PLN02505 117 WLDDTVGLVLHSALLVPYFSWKYSHRRHHSNTGSLERDE 155 (381)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCCCc
Confidence 4444444322223458889999999999999963 6665
No 25
>KOG2987|consensus
Probab=42.25 E-value=3.9 Score=38.81 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=35.0
Q ss_pred HHHHHhcCCCCCCCCCCCCcccccCCCC-CccccchHH--HHHHHHHhcccccccCCCHHHHHHHhhh
Q psy10534 179 LVSILALGEGWHNYHHVFPWDYKAAELG-NYSFNITTF--FIDFFAKIGWAYDRKQPSATLVRNTALR 243 (286)
Q Consensus 179 ~vallt~GEGwHNnHHafP~dyr~ge~~-~~~~D~t~~--~I~~l~~LGLa~dlk~~~~~~i~~~~~r 243 (286)
.+.++||.-|+||=||.||.-.=.. +. .-++-|-++ +-.-=++.|..+|.-.-+.-...+|++|
T Consensus 248 plN~~tfNvGYH~EHHDFP~Ipg~~-Lp~Vr~iApEyYd~lp~~~Sw~~vlydfi~d~~vgpy~RvKR 314 (324)
T KOG2987|consen 248 PLNLLTFNVGYHVEHHDFPYIPGSR-LPKVREIAPEYYDNLPQHKSWVGVLYDFIMDPTVGPYARVKR 314 (324)
T ss_pred ceeeEEEecccccccccCCCCCccc-cHHHHHhhHHHhcCchhhchHHHHHHHHHcCCCcChHHHHhh
Confidence 5568899999999999999653221 11 112222221 1222234556666655444444555554
No 26
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=41.05 E-value=20 Score=34.04 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=10.6
Q ss_pred CCCCCCCCCcccc
Q psy10534 189 WHNYHHVFPWDYK 201 (286)
Q Consensus 189 wHNnHHafP~dyr 201 (286)
.||.||+++++.+
T Consensus 100 ~H~~HH~~~n~~~ 112 (289)
T cd03508 100 YHLEHHRYLGEDG 112 (289)
T ss_pred HHHHhccCCCCCC
Confidence 4899999998744
No 27
>smart00541 FYRN "FY-rich" domain, N-terminal region. is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=33.38 E-value=13 Score=25.64 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=25.6
Q ss_pred HHhcCCCCCCCCCCCCcccccCCCCCccccchH
Q psy10534 182 ILALGEGWHNYHHVFPWDYKAAELGNYSFNITT 214 (286)
Q Consensus 182 llt~GEGwHNnHHafP~dyr~ge~~~~~~D~t~ 214 (286)
++..+++|||-...||--|++...-|--.||+.
T Consensus 2 ~~~~~~~fh~~~~IyP~Gy~s~R~y~S~~dp~~ 34 (44)
T smart00541 2 LPIQGKLFHSEDAIFPVGYKSTRKYWSVKDPNR 34 (44)
T ss_pred ccccCCCcccCCEEecCCEEEEEEEecccCCCC
Confidence 346689999999999999998855444567764
Done!