Query psy10534
Match_columns 286
No_of_seqs 137 out of 1066
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 20:45:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h8d_A Myosin-VI; myosin VI, m 16.9 14 0.00049 30.3 -1.8 24 56-79 25-48 (141)
2 2kta_A Putative helicase; PSI, 9.3 1.3E+02 0.0043 21.9 1.5 20 212-231 50-69 (74)
3 1xmp_A PURE, phosphoribosylami 9.0 94 0.0032 26.4 0.8 48 186-234 1-48 (170)
4 3gv0_A Transcriptional regulat 7.0 98 0.0033 26.2 0.0 14 181-194 275-288 (288)
5 1kf6_D Fumarate reductase 13 k 6.8 79 0.0027 25.4 -0.6 15 43-57 75-89 (119)
6 2v27_A Phenylalanine hydroxyla 6.3 3.7E+02 0.013 24.4 3.5 31 214-245 45-76 (275)
7 2hzs_I RNA polymerase II media 5.3 1.8E+02 0.0062 17.0 0.5 9 186-194 19-27 (27)
8 2byg_A Channel associated prot 4.9 1.5E+02 0.0052 22.3 0.0 13 53-65 5-18 (117)
9 3b76_A E3 ubiquitin-protein li 4.1 1.9E+02 0.0066 21.9 0.0 17 49-65 2-18 (118)
10 2jln_A MHP1; hydantoin, transp 3.8 2.1E+02 0.0071 27.4 -0.1 11 184-194 490-500 (501)
No 1
>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
Probab=16.85 E-value=14 Score=30.34 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=18.6
Q ss_pred CCCCCCCCCcccchHHhhhhhhhh
Q psy10534 56 SETDADPHNSKRGFFFAHVGWLMC 79 (286)
Q Consensus 56 sDtd~DPHs~~rGf~~sH~GWll~ 79 (286)
+|...+|.++++|+||+|+-=...
T Consensus 25 ~~~~k~~~~~k~G~WYAHFdGqwI 48 (141)
T 3h8d_A 25 ADQYKDPQNKKKGWWYAHFDGPWI 48 (141)
T ss_dssp GGTTSCGGGCCEEEEEEEEETTEE
T ss_pred cccccCCCCcccceEEEeeCChhh
Confidence 466678888999999999865443
No 2
>2kta_A Putative helicase; PSI, NESG, GFT ATP-binding, nucleotide-binding, structu genomics, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=9.26 E-value=1.3e+02 Score=21.90 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=15.8
Q ss_pred chHHHHHHHHHhcccccccC
Q psy10534 212 ITTFFIDFFAKIGWAYDRKQ 231 (286)
Q Consensus 212 ~t~~~I~~l~~LGLa~dlk~ 231 (286)
++--=|..|+.||.+|+|..
T Consensus 50 Ls~eRi~~L~~lGf~w~~~~ 69 (74)
T 2kta_A 50 LPNDRRLLLDKIGFVWSLEH 69 (74)
T ss_dssp CCHHHHHHHHHHTCCCCCCS
T ss_pred CCHHHHHHHHHcCCEecccc
Confidence 44445999999999999853
No 3
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=8.96 E-value=94 Score=26.40 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCcccccCCCCCccccchHHHHHHHHHhcccccccCCCH
Q psy10534 186 GEGWHNYHHVFPWDYKAAELGNYSFNITTFFIDFFAKIGWAYDRKQPSA 234 (286)
Q Consensus 186 GEGwHNnHHafP~dyr~ge~~~~~~D~t~~~I~~l~~LGLa~dlk~~~~ 234 (286)
|..-|..||.-|.-.--- -+-=.+....-....|+.+|.-+|++..+.
T Consensus 1 ~~~~~~~~~~~~~V~Iim-GS~SD~~v~~~a~~~L~~~Gi~~dv~V~Sa 48 (170)
T 1xmp_A 1 GSSHHHHHHMKSLVGVIM-GSTSDWETMKYACDILDELNIPYEKKVVSA 48 (170)
T ss_dssp ----------CCSEEEEE-SSGGGHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCccccccCCCcEEEEE-CcHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 345577788888653221 011123344458999999999999987765
No 4
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=7.00 E-value=98 Score=26.17 Aligned_cols=14 Identities=50% Similarity=0.681 Sum_probs=0.4
Q ss_pred HHHhcCCCCCCCCC
Q psy10534 181 SILALGEGWHNYHH 194 (286)
Q Consensus 181 allt~GEGwHNnHH 194 (286)
+=..-|||||..||
T Consensus 275 s~~~~~~~~~~~~~ 288 (288)
T 3gv0_A 275 SSMAPKEGHHHHHH 288 (288)
T ss_dssp C-------------
T ss_pred cccCCcccccccCC
Confidence 44456999998887
No 5
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=6.82 E-value=79 Score=25.40 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=11.5
Q ss_pred hhhhhhcccccCCCC
Q psy10534 43 FNWVRDHRVHHKYSE 57 (286)
Q Consensus 43 ~~Wv~~HR~HHk~sD 57 (286)
--|...||.||.--|
T Consensus 75 plWh~~HRihh~lHD 89 (119)
T 1kf6_D 75 PLWCGLHRMHHAMHD 89 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh
Confidence 469999999995333
No 6
>2v27_A Phenylalanine hydroxylase; cold adaptation, tetrahydrobiopterin, stability, flexibility, alkaptonuria, oxidoreductase; 1.50A {Colwellia psychrerythraea 34H} PDB: 2v28_A
Probab=6.30 E-value=3.7e+02 Score=24.37 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcccccccCCCHHHHHHHhhh-cC
Q psy10534 214 TFFIDFFAKIGWAYDRKQPSATLVRNTALR-HG 245 (286)
Q Consensus 214 ~~~I~~l~~LGLa~dlk~~~~~~i~~~~~r-~g 245 (286)
.-+++.|++||+-.| +.|.-+.|.+++++ ||
T Consensus 45 ~eyl~gl~~Lgl~~d-~IPql~dvn~~L~~~TG 76 (275)
T 2v27_A 45 DEYHEGLAKLNLPTD-RIPQLDEVSKVLKVSTG 76 (275)
T ss_dssp HHHHHHHHHHCCCSS-SCCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCCC-CCCCHHHHHHHHHhccC
Confidence 357999999999888 88999999999876 54
No 7
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=5.33 E-value=1.8e+02 Score=16.98 Aligned_cols=9 Identities=56% Similarity=0.936 Sum_probs=5.5
Q ss_pred CCCCCCCCC
Q psy10534 186 GEGWHNYHH 194 (286)
Q Consensus 186 GEGwHNnHH 194 (286)
||--|.-||
T Consensus 19 gekhhhhhh 27 (27)
T 2hzs_I 19 GEKHHHHHH 27 (27)
T ss_dssp CCCCSSCCC
T ss_pred ccccccccC
Confidence 886655554
No 8
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=4.92 E-value=1.5e+02 Score=22.31 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=0.0
Q ss_pred cCCC-CCCCCCCCc
Q psy10534 53 HKYS-ETDADPHNS 65 (286)
Q Consensus 53 Hk~s-Dtd~DPHs~ 65 (286)
|.++ +.+.||||-
T Consensus 5 ~~~~~~~~~dp~s~ 18 (117)
T 2byg_A 5 HHHSSGVDLGTENL 18 (117)
T ss_dssp --------------
T ss_pred ccccCccCCCCccc
Confidence 3344 478999996
No 9
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=4.07 E-value=1.9e+02 Score=21.93 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=0.6
Q ss_pred cccccCCCCCCCCCCCc
Q psy10534 49 HRVHHKYSETDADPHNS 65 (286)
Q Consensus 49 HR~HHk~sDtd~DPHs~ 65 (286)
|..||--+..+.||+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (118)
T 3b76_A 2 HHHHHHSSGVDLGTENL 18 (118)
T ss_dssp ----------------C
T ss_pred CcCCccccCCCCCcccc
Confidence 44444446788999976
No 10
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=3.75 E-value=2.1e+02 Score=27.41 Aligned_cols=11 Identities=55% Similarity=0.766 Sum_probs=0.0
Q ss_pred hcCCCCCCCCC
Q psy10534 184 ALGEGWHNYHH 194 (286)
Q Consensus 184 t~GEGwHNnHH 194 (286)
+-|.|-|..||
T Consensus 490 ~~~~~~~~~~~ 500 (501)
T 2jln_A 490 AGGRGSHHHHH 500 (501)
T ss_dssp -----------
T ss_pred CCCCCcccccC
Confidence 45666666555
Done!