RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10534
         (286 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 32.1 bits (72), Expect = 0.22
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 14/84 (16%)

Query: 30  FYFL--------LCICFQNSVFNWVRDHRVHHKYSETDADPHNSKR-----GFFFAHVGW 76
           F FL               S+ N ++  + +  Y   D DP   +       F       
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-CDNDPKYERLVNAILDFLPKIEEN 558

Query: 77  LMCRKHKDVIEKGRMVDMSDVMAD 100
           L+C K+ D++    M +   +  +
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFEE 582



 Score = 31.0 bits (69), Expect = 0.51
 Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 44/139 (31%)

Query: 46  VRDHRVHHK-----YSETDADPHNSK-----RGFFFAHVGWLMCRKHKDVIEKGRMVDM- 94
           + +    H+     Y+       +         +F++H+G      H   IE    + + 
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-----HLKNIEHPERMTLF 493

Query: 95  SDVMADPLVRFHEKHFFWFKLVLCFIIPTIVPYYYFGESLLVSVLTMNFFRYILTLNFTW 154
             V  D   RF E+     K     I      +   G S+L ++  + F++         
Sbjct: 494 RMVFLD--FRFLEQ-----K-----IRHDSTAWNASG-SILNTLQQLKFYK--------- 531

Query: 155 AVNSAAHIWGNKP-FDRRI 172
                 +I  N P ++R +
Sbjct: 532 -----PYICDNDPKYERLV 545


>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2,
           protein structure initiative; 2.05A {Thermotoga
           maritima}
          Length = 278

 Score = 30.2 bits (67), Expect = 0.75
 Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 3/28 (10%)

Query: 170 RRIMPA---ENKLVSILALGEGWHNYHH 194
           R+ +        ++ IL + EG H++HH
Sbjct: 251 RKYVFGRVERGPVLRILEVVEGHHHHHH 278


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.141    0.482 

Gapped
Lambda     K      H
   0.267   0.0484    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,683,574
Number of extensions: 273384
Number of successful extensions: 599
Number of sequences better than 10.0: 1
Number of HSP's gapped: 598
Number of HSP's successfully gapped: 8
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.3 bits)