RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10534
         (286 letters)



>d1v5da_ a.102.1.2 (A:) Chitosanase {Bacillus sp., strain k17
           [TaxId: 1409]}
          Length = 386

 Score = 26.9 bits (59), Expect = 2.7
 Identities = 11/73 (15%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 150 LNFTWAVNSAAHIWGNKPFDRRIMPAENKLVSILALGEGWHNYH-HVFPWDYKAAELGNY 208
           L+  +++  A   WG+      +  A++ +   +      +N   ++  WD K++     
Sbjct: 138 LDIAYSLLLAHKQWGSNGTVNYLKEAQDMITKGIKASNVTNNNQLNLGDWDSKSSLDTRP 197

Query: 209 SFNITTFFIDFFA 221
           S  + +    F+ 
Sbjct: 198 SDWMMSHLRAFYE 210


>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 1207

 Score = 26.0 bits (56), Expect = 6.4
 Identities = 23/225 (10%), Positives = 54/225 (24%), Gaps = 11/225 (4%)

Query: 12  LHRPDGGIRNVVCCTHRIFYFLLCICFQNSVFNWVRDHRVHHKYSETDADPHNSKRGFFF 71
           L+  +G     +  T       + I         + D  +         D    +     
Sbjct: 241 LYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPC 300

Query: 72  AHVGWLMCRKHKDVIEKGRMVDMSDVMADPLVRFHEKHFFWFKLVLCFIIPTIVPYYYFG 131
              G+++  +   +   GR      +  +  +++ +       L     +        F 
Sbjct: 301 VEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFF 360

Query: 132 ESLLVSVLTMNFFRYILTLNFTWAVNSAAHIWGNKPFDRRIMPAENKLVSILALGEGW-- 189
              +++ L +                     +G K  D           ++         
Sbjct: 361 LGYMINRLLL--------CALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIF 412

Query: 190 -HNYHHVFPWDYKAAELGNYSFNITTFFIDFFAKIGWAYDRKQPS 233
            +    V        +L   +  IT+      A   W   +K  S
Sbjct: 413 RYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMS 457


>d1lj8a3 a.100.1.9 (A:287-492) Mannitol 2-dehydrogenase {Pseudomonas
           fluorescens [TaxId: 294]}
          Length = 206

 Score = 25.4 bits (55), Expect = 8.5
 Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 5/37 (13%)

Query: 94  MSDVMADPLVRFHEKHFFWFKLVLCFIIPTIVPYYYF 130
           + + M DPL   + + +         + P + P    
Sbjct: 32  VHETMNDPLFVAYMRAYMDLD-----VTPNLAPVPGI 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.482 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,185,898
Number of extensions: 55743
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 21
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.0 bits)