Query psy10535
Match_columns 591
No_of_seqs 283 out of 1333
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 20:46:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3747|consensus 100.0 1E-146 3E-151 1159.8 42.5 479 2-591 97-578 (602)
2 TIGR00804 nupC nucleoside tran 100.0 2E-136 5E-141 1080.9 40.2 399 192-591 1-401 (401)
3 COG1972 NupC Nucleoside permea 100.0 1E-129 3E-134 1010.9 39.0 401 189-591 1-402 (404)
4 PF07662 Nucleos_tra2_C: Na+ d 100.0 1.6E-76 3.5E-81 581.7 20.4 209 381-591 1-209 (210)
5 COG1972 NupC Nucleoside permea 100.0 1.3E-33 2.7E-38 294.7 14.2 277 81-365 1-357 (404)
6 TIGR00804 nupC nucleoside tran 100.0 1.3E-30 2.9E-35 276.7 15.5 285 84-375 1-368 (401)
7 PF01773 Nucleos_tra2_N: Na+ d 99.8 1.8E-21 3.8E-26 163.8 6.3 74 88-161 1-74 (75)
8 PF01773 Nucleos_tra2_N: Na+ d 99.8 7E-20 1.5E-24 154.2 3.6 73 196-268 1-73 (75)
9 KOG3747|consensus 98.9 6.9E-09 1.5E-13 112.7 9.6 238 131-375 226-545 (602)
10 PF07662 Nucleos_tra2_C: Na+ d 98.1 4.2E-06 9.2E-11 83.6 6.8 149 219-375 1-176 (210)
11 PF07670 Gate: Nucleoside reco 97.6 0.00022 4.8E-09 63.1 8.3 95 279-374 2-104 (109)
12 PRK10519 hypothetical protein; 95.8 0.18 3.9E-06 48.4 12.9 102 420-539 3-105 (151)
13 PRK10519 hypothetical protein; 95.1 0.11 2.3E-06 50.0 8.5 124 273-400 17-150 (151)
14 TIGR02871 spore_ylbJ sporulati 95.0 6.7 0.00015 42.8 23.6 179 277-456 33-220 (362)
15 TIGR00437 feoB ferrous iron tr 84.1 91 0.002 36.3 19.9 206 277-497 312-530 (591)
16 TIGR00947 2A73 probable bicarb 64.7 2.2E+02 0.0048 31.5 15.7 27 152-178 159-185 (425)
17 PRK15445 arsenical pump membra 57.4 83 0.0018 34.6 10.7 17 215-231 355-371 (427)
18 TIGR01167 LPXTG_anchor LPXTG-m 56.2 11 0.00024 26.5 2.4 32 74-105 2-33 (34)
19 PF00939 Na_sulph_symp: Sodium 54.1 49 0.0011 36.9 8.4 81 62-147 272-354 (471)
20 PF12555 TPPK_C: Thiamine pyro 54.1 39 0.00085 26.8 5.5 45 103-147 7-52 (53)
21 COG0700 SpmB Uncharacterized m 54.0 37 0.0008 33.0 6.2 65 420-498 12-76 (162)
22 COG3314 Uncharacterized protei 53.8 1.6E+02 0.0034 33.2 11.9 85 281-370 118-209 (427)
23 COG0700 SpmB Uncharacterized m 52.1 40 0.00086 32.8 6.1 51 272-324 25-75 (162)
24 TIGR01272 gluP glucose/galacto 46.1 3.7E+02 0.008 28.0 13.5 27 380-407 94-120 (310)
25 PF12555 TPPK_C: Thiamine pyro 44.1 43 0.00092 26.6 4.3 45 211-255 7-52 (53)
26 PF04279 IspA: Intracellular s 40.9 3.6E+02 0.0079 26.5 11.2 31 87-117 54-84 (176)
27 PF12794 MscS_TM: Mechanosensi 39.3 5.2E+02 0.011 27.9 16.6 43 166-208 130-177 (340)
28 TIGR00935 2a45 arsenical pump 36.8 5.3E+02 0.012 28.1 13.0 32 105-141 276-307 (429)
29 COG3366 Uncharacterized protei 36.8 5.8E+02 0.013 27.6 20.2 273 274-582 9-298 (311)
30 COG1055 ArsB Na+/H+ antiporter 35.3 5.7E+02 0.012 28.7 12.9 55 66-123 232-294 (424)
31 cd00290 cytochrome_b_C Cytochr 34.8 2.7E+02 0.0059 26.4 9.0 56 6-65 20-75 (147)
32 COG0471 CitT Di- and tricarbox 28.8 4.1E+02 0.0089 29.8 10.6 71 65-136 269-341 (461)
33 TIGR03813 put_Glu_GABA_T putat 28.6 1.3E+02 0.0028 33.5 6.5 29 76-104 428-457 (474)
34 KOG1619|consensus 27.4 3.8E+02 0.0083 28.0 9.0 93 87-203 25-136 (245)
35 COG0385 Predicted Na+-dependen 26.8 1.2E+02 0.0026 32.8 5.6 66 54-122 9-80 (319)
36 PLN03223 Polycystin cation cha 25.8 1.6E+03 0.035 29.4 16.9 58 13-72 1174-1233(1634)
37 TIGR03097 PEP_O_lig_1 probable 25.2 9.2E+02 0.02 26.3 18.1 82 26-110 14-100 (402)
38 cd01116 P_permease Permease P 24.9 6E+02 0.013 27.5 10.7 50 84-134 243-294 (413)
39 COG1033 Predicted exporters of 24.6 7.8E+02 0.017 29.8 12.2 116 422-549 286-403 (727)
40 TIGR00727 ISP4_OPT small oligo 23.8 6.5E+02 0.014 30.1 11.3 28 7-34 348-375 (681)
41 PRK10794 cell wall shape-deter 23.1 5.6E+02 0.012 28.0 10.0 22 90-111 118-139 (370)
42 COG4214 XylH ABC-type xylose t 22.5 2.8E+02 0.0061 30.7 7.3 52 84-137 220-271 (394)
43 cd00625 ArsB_NhaD_permease Ani 22.1 8.9E+02 0.019 25.8 11.3 34 105-139 255-288 (396)
44 PF12805 FUSC-like: FUSC-like 21.7 5.2E+02 0.011 26.8 9.1 77 79-157 44-123 (284)
45 PRK03814 oxaloacetate decarbox 20.9 3.1E+02 0.0066 24.1 6.0 12 354-365 12-23 (85)
46 PF04246 RseC_MucC: Positive r 20.9 1.4E+02 0.0031 27.5 4.3 35 79-113 96-131 (135)
47 TIGR00997 ispZ intracellular s 20.6 8.4E+02 0.018 24.2 14.0 32 81-113 49-80 (178)
48 MTH00046 CYTB cytochrome b; Va 20.2 4.1E+02 0.0088 29.3 8.1 78 6-100 218-296 (355)
49 PF11990 DUF3487: Protein of u 20.0 2E+02 0.0044 26.7 5.0 29 345-375 18-46 (121)
No 1
>KOG3747|consensus
Probab=100.00 E-value=1.3e-146 Score=1159.79 Aligned_cols=479 Identities=43% Similarity=0.744 Sum_probs=447.7
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhhchhhhHHHhhhcccccccccchh-hhHHHHHHHHHHHH-HHHHHhhhchh
Q psy10535 2 GVIDWCNGLGILLIAAVFIYWFVFYYTVIKPFLFPILLRYSIDTTTKAFKNFI-MTVRISVQIILSIA-FVIFILIDAWD 79 (591)
Q Consensus 2 ~~~d~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~-~~~f~~~d~~~ 79 (591)
+.+|||||++++++++.++|| +||+++||.+|++++|...||..+.+.++. .|..++...+..++ +++|+.+||++
T Consensus 97 cilNfq~a~~l~vvt~~~~~~--l~~~~lk~~vG~kl~~~~l~p~~~k~~~fs~~w~v~~~~~~~~l~~l~~~l~~dt~~ 174 (602)
T KOG3747|consen 97 CILNFQRALPLFVVTLFFIYC--LYYWVLKPIVGHKLFRNYLKPFGGKRLLFSRLWFVSLVAKAAFLAALVAWLIFDTRQ 174 (602)
T ss_pred HHHhHHhhhhHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 578999999999999999986 899999999999999888899888886543 45544444444444 88999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHhHHHHHHHHHhhhcCceeeec
Q psy10535 80 QKRRLISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFLEFAYQGAAFVYG 159 (591)
Q Consensus 80 ~~~~l~sl~Gl~v~l~ia~l~S~nrk~I~Wr~V~~gl~lQ~ilal~vL~t~~G~~if~~is~~~~~lL~~a~~G~~FvFG 159 (591)
+++|++|+.|++++++++|++||||++||||+|.||+++|+++|++++
T Consensus 175 ~~~qLv~f~g~v~fIl~~f~fSk~~~~V~WriV~~gl~~qfllgllvl-------------------------------- 222 (602)
T KOG3747|consen 175 DPQQLVGFGGPVFFILFLFVFSKHHRAVNWRIVTSGLGLQFLLGLLVL-------------------------------- 222 (602)
T ss_pred cHHHhhccccHHHHHHHHHhhcCCccccchhhhhHHHHHHHHHhheee--------------------------------
Confidence 999999999999999999999998888888888888888777755555
Q ss_pred ccccchhhhHHHHHHHHHhhhhheecchhhHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHhhhhheeecch
Q psy10535 160 DEIVTVRISVQIILSIAFVIFILIDAWDQKRRLISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSL 239 (591)
Q Consensus 160 ~l~~~~~fFf~~Ll~Ivfi~fli~~~~~~~~rL~sl~Gi~v~l~ia~llS~~rk~I~wr~Vi~gL~lQ~~lalivl~~~~ 239 (591)
|||.
T Consensus 223 ----------------------------------------------------------------------------R~~~ 226 (602)
T KOG3747|consen 223 ----------------------------------------------------------------------------RWPT 226 (602)
T ss_pred ----------------------------------------------------------------------------ecCc
Confidence 5555
Q ss_pred hHHHHHHhhHHHHHHHhhhcCCceeecCcccccccceehhhHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC
Q psy10535 240 GRYVLECIGHHVQTFLEFAYQGAAFVYGDEIVFVYHVFAFKVLSVIFFMSFIIQICFYYGWLQSIFLKLGWLLQVSLGTT 319 (591)
Q Consensus 240 G~~~~~~i~~~v~~ll~~~~~G~~FvfG~~~~~~~~~Faf~VLp~IIffsaLisiLyy~Gimq~ii~~i~~~l~~~mG~s 319 (591)
||.+|+|++++++.+|+|+++|++|||||.++ |..+|||++||+|+|||+++|+|||+|+|||+++|++|.||.++||+
T Consensus 227 G~~~Fq~Lg~~V~~FL~Ya~~GA~FVFGd~i~-d~~VFaF~~LpiiifFS~vvSiLyYlG~mQwvl~K~~W~mqv~~GTT 305 (602)
T KOG3747|consen 227 GRWIFQWLGEQVQIFLEYAQAGASFVFGDNIC-DLAVFAFAILPIIIFFSAVVSILYYLGLMQWVLQKSGWFMQVTIGTT 305 (602)
T ss_pred chHHHHHHHHHHHHHHHHHhcCceEeecchhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 55666666777788888888888999998888 55599999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhcccccccceeeccccccCChhhHHHHHhhhhhhhHHHHHHHHHhcCCCcchHHHHhhhhhhHHHHHHhh
Q psy10535 320 VAESVNTCASVFLGMTEAPLLIKPYLPDLTRSELTAVMLGGFSTVAGTVFAAYTSLGVQAAHIITASIMTAPSALSYSKI 399 (591)
Q Consensus 320 ~~Es~~AaaniFlGqtEapllikpyl~~mt~sel~~vm~~G~atiagsvl~aY~~~g~~~~~lltAsvmsapaal~iaki 399 (591)
++||++|++|+|+|||||||+|||||++||+||+|++||+|||||||||++||++||+||+||+|||+||||++|++||+
T Consensus 306 ~~ESv~aagniFlgmTEaPLlIrPYl~~lT~SElhaImTsGfAtvaGTVlgAYvsfGa~as~LitASVmaAP~sLA~sKL 385 (602)
T KOG3747|consen 306 PCESVNAAGNIFLGMTEAPLLIRPYLEKLTKSELHAIMTSGFATVAGTVLGAYVSFGASASSLITASVMAAPASLACSKL 385 (602)
T ss_pred hhhhhhhhhhheeccccCceeechhhhhhhHHHHHHHHhccchhhhhhhHHHHHhcCCCHHHHHHHHHHhchHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccccccCCCCCCHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHh
Q psy10535 400 LYPETEISKTTISNIKKWKSDDLNVIDAACKGAQIGTEMVLGIIANIIAFVSFVAFCNAMLIWFGSLVGVEDLTIEFIFG 479 (591)
Q Consensus 400 ~~Pet~~~~~~~~~~~~~~~~~~n~~~A~~~Ga~~g~~la~~I~a~lIafvalial~n~~l~~~g~~~g~~~ltl~~ilg 479 (591)
+|||||||.+++|++|+|+++++|++||+++||.+.++++.||+||||||+|+++++|++++|+|+++|+|++|||+|+|
T Consensus 386 ~yPEtEEs~~~ee~~kLe~~~~~~lldaassga~aav~~V~~I~anlIaflAllaFlna~~swiGdLig~~gltFq~I~s 465 (602)
T KOG3747|consen 386 FYPETEESITKEEDIKLESGDDRNLLDAASSGAVAAVPIVLNIAANLIAFLALLAFLNAALSWIGDLIGYDGLTFQMIFS 465 (602)
T ss_pred cCCccccccccccccccccCCcccHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHhCCCchhHHHHHHHHhhHhhhhhhhhhhhh-hhhhhcCCCCchhhHHHHHHHhcccChhhhHHHHhhhccc
Q psy10535 480 KIFIPLTWIMGVEPSQCEEVARLIGLKTVINEFVAYKEL-GRVKKLGLLSPRSEAIATYSLCGFANPGSVGCLIATLNTL 558 (591)
Q Consensus 480 yif~P~a~lmGvp~~d~~~vg~l~g~K~v~NEFvAy~~l-~~~~~~~~ls~rs~~I~t~aLcgFaN~~SiGi~ig~~~~l 558 (591)
|+|.|++|+|||||+||..|||+||+|+.+||||||++| +++++++++|+||+.|+||||||||||||+||++|++++|
T Consensus 466 yif~Pl~fmMGV~w~dc~~VA~lvg~KtfiNEFVAY~~Lsg~~v~~~kisvrs~~iaTfalCGFaN~sSlGI~ig~Ltsm 545 (602)
T KOG3747|consen 466 YIFIPLVFMMGVPWEDCLLVAQLVGTKTFINEFVAYENLSGELVKGGKISVRSELIATFALCGFANFSSLGIQIGGLTSM 545 (602)
T ss_pred HHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccchhHHHHHHHHHhccCCccchheeecccccc
Confidence 999999999999999999999999999999999999999 5688888999999999999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy10535 559 VPSQRRNTIDLAFRAFIGGCVVCLLTACIVDNI 591 (591)
Q Consensus 559 ap~r~~~ia~~~~ral~~g~la~~~tA~iaG~l 591 (591)
+|+||+|++|+++||+++|++||+|+||+||+|
T Consensus 546 aP~Rks~is~v~~RAl~aGai~cfm~A~~AGIL 578 (602)
T KOG3747|consen 546 APSRKSDISKVVLRALCAGAIACFMNACVAGIL 578 (602)
T ss_pred CCcccchHHHHHHHHHHhhhHHHHHHHHHhhee
Confidence 999999999999999999999999999999986
No 2
>TIGR00804 nupC nucleoside transporter. One human homologue(CNT1) transports pyrimidine nucleosides and adenosine, but deoxyadenosine and guanosine are poor substrates of this permease. Another (CNT2) is selective for purine nucleosides. Alteration of just a few amino acyl residues in TMSs 7 and 8 interconverts their specificities.
Probab=100.00 E-value=2.3e-136 Score=1080.88 Aligned_cols=399 Identities=41% Similarity=0.741 Sum_probs=383.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHhhhhheeecchhHHHHHHhhHHHHHHHhhhcCCceeecCcccc
Q psy10535 192 LISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFLEFAYQGAAFVYGDEIV 271 (591)
Q Consensus 192 L~sl~Gi~v~l~ia~llS~~rk~I~wr~Vi~gL~lQ~~lalivl~~~~G~~~~~~i~~~v~~ll~~~~~G~~FvfG~~~~ 271 (591)
++|+.|+++++.++|++|+|||+||||+|.+|+.+|+.+|++++|||.||+++++++++++++++|+++|++||||+...
T Consensus 1 l~~l~Gi~~~l~ia~l~S~nRk~I~wr~V~~gl~lQ~~la~~vl~~~~G~~~~~~i~~~v~~ll~~a~~G~~FvFG~l~~ 80 (401)
T TIGR00804 1 LISFVGLVVFILIAFLCSSNKKAISWRTVVSALVLQFLLGLIVLRTPPGFWAFQGLADQIQILLSYANEGSSFVFGPPLV 80 (401)
T ss_pred CeehHHHHHHHHHHHHHhCCCCcCCchHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhCceeecCcccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999997543
Q ss_pred cccceehhhHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCcchhhhhhhhhcccccccceeeccccccCChh
Q psy10535 272 FVYHVFAFKVLSVIFFMSFIIQICFYYGWLQSIFLKLGWLLQVSLGTTVAESVNTCASVFLGMTEAPLLIKPYLPDLTRS 351 (591)
Q Consensus 272 ~~~~~Faf~VLp~IIffsaLisiLyy~Gimq~ii~~i~~~l~~~mG~s~~Es~~AaaniFlGqtEapllikpyl~~mt~s 351 (591)
+++|+|||+|||+|+|||+++++|||+|+|||++++++|.+||+||+|++||++|++|+|+||||||++||||+++||||
T Consensus 81 ~~~fiFaf~vLp~IiFfsal~siLyylgimq~iV~~~g~~l~k~~g~s~~Es~~aaaniFlGqtEapl~ikpyl~~mT~s 160 (401)
T TIGR00804 81 QDLFVFAFQVLPIIIFFSALISILYYLGIMQWVIRKIGWFLQKAMGTTKLESFSAAANIFLGQTEAPLVIRPYLGDMTDS 160 (401)
T ss_pred ccceeeHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHccCCcchhhhHHhHhhCCHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhhhHHHHHHHHHhcCCCcchHHHHhhhhhhHHHHHHhhcCCccccccccc-ccccccCCCCCCHHHHHHH
Q psy10535 352 ELTAVMLGGFSTVAGTVFAAYTSLGVQAAHIITASIMTAPSALSYSKILYPETEISKTTI-SNIKKWKSDDLNVIDAACK 430 (591)
Q Consensus 352 el~~vm~~G~atiagsvl~aY~~~g~~~~~lltAsvmsapaal~iaki~~Pet~~~~~~~-~~~~~~~~~~~n~~~A~~~ 430 (591)
|||++||+||||||||+|++|++||+|++||+|||+||+|+++++||+++||||+++++. ++.+.++ +++|++||+++
T Consensus 161 EL~~im~~GmatIaGsvl~aY~~~gv~~~~LltAsvmsaPaal~~aki~~Pete~~~~~~~~~~~~~~-~~~n~~dA~~~ 239 (401)
T TIGR00804 161 ELFTVMTSGMATIAGSVLGAYISMGVPATYLIAASVMAAPCALAFAKLIYPEVEESKEKSEEDVKLEE-GDQNFFEAASN 239 (401)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhHHHHHHHhhcCCCCCCccccccccccccc-CCcCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987653 3333333 56999999999
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHhhhHhHHHHHhCCCchhHHHHHHHHhhHhhhh
Q psy10535 431 GAQIGTEMVLGIIANIIAFVSFVAFCNAMLIWFGSLVGVEDLTIEFIFGKIFIPLTWIMGVEPSQCEEVARLIGLKTVIN 510 (591)
Q Consensus 431 Ga~~g~~la~~I~a~lIafvalial~n~~l~~~g~~~g~~~ltl~~ilgyif~P~a~lmGvp~~d~~~vg~l~g~K~v~N 510 (591)
|+.||+|+++||+||||+|+||++++|++++|+|+++|++++|||.|+||+|+|+||+|||||+||.++||+||||+++|
T Consensus 240 Ga~~G~kla~~I~amLIafvaLialiN~~l~~~g~~~g~~~lslq~ilGyif~PlawlmGvp~~e~~~~g~LmG~K~v~N 319 (401)
T TIGR00804 240 GALAGVKVVANVAAMLIAFVALLALINGILSWVGGWVGYGGLSFQLIFGYVFRPLAFLMGVPWSDAPLVAQLMGTKLAVN 319 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhcC-CCCchhhHHHHHHHhcccChhhhHHHHhhhcccCCCcccchHHHHHHHHHHHHHHHHHHHHhhh
Q psy10535 511 EFVAYKELGRVKKLG-LLSPRSEAIATYSLCGFANPGSVGCLIATLNTLVPSQRRNTIDLAFRAFIGGCVVCLLTACIVD 589 (591)
Q Consensus 511 EFvAy~~l~~~~~~~-~ls~rs~~I~t~aLcgFaN~~SiGi~ig~~~~lap~r~~~ia~~~~ral~~g~la~~~tA~iaG 589 (591)
|||||+||+++++++ ++||||++|+||||||||||||+|||+|++++|+||||+|++|+++|++++|++||+|||||||
T Consensus 320 EFVAy~~L~~~~~~~~~ls~rs~~I~tyaLcGFANfsSiGI~iGgi~~laP~rr~~ia~lg~ral~~gtLa~~msA~iaG 399 (401)
T TIGR00804 320 EFVAYLDLSQYLQTRLWLSPKTEAIITFALCGFANFSSIGIILGGLGSLVPKRKSVISRLVLRALCAGTLVSLMSATIAG 399 (401)
T ss_pred hHHHHHHHHHhhhcccccChhhhHhHHhhhhccccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999997655 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q psy10535 590 NI 591 (591)
Q Consensus 590 ~l 591 (591)
+.
T Consensus 400 l~ 401 (401)
T TIGR00804 400 LY 401 (401)
T ss_pred cC
Confidence 74
No 3
>COG1972 NupC Nucleoside permease [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.4e-129 Score=1010.93 Aligned_cols=401 Identities=36% Similarity=0.622 Sum_probs=388.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHhhhhheeecchhHHHHHHhhHHHHHHHhhhcCCceeecCc
Q psy10535 189 KRRLISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFLEFAYQGAAFVYGD 268 (591)
Q Consensus 189 ~~rL~sl~Gi~v~l~ia~llS~~rk~I~wr~Vi~gL~lQ~~lalivl~~~~G~~~~~~i~~~v~~ll~~~~~G~~FvfG~ 268 (591)
|+.++|+.|+++++.++|++|+|||+||||+|.+++.+|+.+|++++++|+|+++++++++.++++++|+++|++|+||+
T Consensus 1 m~~l~~ilGl~v~l~ia~l~S~nRK~I~~rti~~~lviQv~la~~~L~~p~G~~~l~~~~~~v~~li~~a~~Gi~FvFG~ 80 (404)
T COG1972 1 MEILISILGLAVLLGIAFLFSSNRKAIRWRTVIGALVIQVLLALFMLYTPAGQWALRGLANGVEKLIAYANAGINFVFGS 80 (404)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCceeeccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccccc-cceehhhHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCcchhhhhhhhhcccccccceeecccccc
Q psy10535 269 EIVFV-YHVFAFKVLSVIFFMSFIIQICFYYGWLQSIFLKLGWLLQVSLGTTVAESVNTCASVFLGMTEAPLLIKPYLPD 347 (591)
Q Consensus 269 ~~~~~-~~~Faf~VLp~IIffsaLisiLyy~Gimq~ii~~i~~~l~~~mG~s~~Es~~AaaniFlGqtEapllikpyl~~ 347 (591)
...++ +|+||++|||+|+|||+|+++|||+|||||+++++||.+||++|+|+.||++|++|+|+||||+|+++|||+++
T Consensus 81 l~~~~~gf~Fa~~VL~~IiF~saLi~iLyy~gIlp~vI~~iG~~l~K~lg~sk~ES~~a~a~iflGqtE~pl~vk~~l~~ 160 (404)
T COG1972 81 LADPKAGFIFAFRVLPPIIFISALISILYYIGILPLVIRIIGGGLQKALGTSKLESFSAVANIFLGQTEAPLVVKPYLGK 160 (404)
T ss_pred ccCCCCceeeeHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHhCCccccchhHHhhhh
Confidence 65534 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHhhhhhhhHHHHHHHHHhcCCCcchHHHHhhhhhhHHHHHHhhcCCcccccccccccccccCCCCCCHHHH
Q psy10535 348 LTRSELTAVMLGGFSTVAGTVFAAYTSLGVQAAHIITASIMTAPSALSYSKILYPETEISKTTISNIKKWKSDDLNVIDA 427 (591)
Q Consensus 348 mt~sel~~vm~~G~atiagsvl~aY~~~g~~~~~lltAsvmsapaal~iaki~~Pet~~~~~~~~~~~~~~~~~~n~~~A 427 (591)
|||||+||+||+||||||||++++|++||+|++||+|||+||+|+++++||+++||||++++.+++.+.++++++|++||
T Consensus 161 mt~selftv~~~gmasVsgsilg~Y~~mgvp~~yllaAs~m~~p~gli~Akii~P~t~~~~~~~~~~~~~~e~~~n~ida 240 (404)
T COG1972 161 MSRSELFTVMASGMASVSGSILGGYASMGVPPEYLLAASFMNAPGGLLFAKLINPYTEDEQDAEDDLSNDEEGPKNFIEA 240 (404)
T ss_pred ccHhHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchHHHHHHhcCCCCCCccchhhhhcccccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876655555556667899999
Q ss_pred HHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHhhhHhHHHHHhCCCchhHHHHHHHHhhHh
Q psy10535 428 ACKGAQIGTEMVLGIIANIIAFVSFVAFCNAMLIWFGSLVGVEDLTIEFIFGKIFIPLTWIMGVEPSQCEEVARLIGLKT 507 (591)
Q Consensus 428 ~~~Ga~~g~~la~~I~a~lIafvalial~n~~l~~~g~~~g~~~ltl~~ilgyif~P~a~lmGvp~~d~~~vg~l~g~K~ 507 (591)
+++|++||+|+|++|+||||+|+|++|++|++++|+|+++|++++|+|.|+||+|+|+||+||+||+||.++|++||+|+
T Consensus 241 ~a~ga~~G~klAl~VgAmLiaFVaLialiN~ilg~~gg~~g~~~lsl~~IlGyvfaP~AflmGvPw~eA~~aGslig~Kl 320 (404)
T COG1972 241 AAEGALTGLKLALNVGAMLIAFVALIALINGILGGVGGWFGISGLSLEQILGYVFAPLAFLMGVPWSEALQAGSLIGTKL 320 (404)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhcCCCCchhhHHHHHHHhcccChhhhHHHHhhhcccCCCcccchHHHHHHHHHHHHHHHHHHHHh
Q psy10535 508 VINEFVAYKELGRVKKLGLLSPRSEAIATYSLCGFANPGSVGCLIATLNTLVPSQRRNTIDLAFRAFIGGCVVCLLTACI 587 (591)
Q Consensus 508 v~NEFvAy~~l~~~~~~~~ls~rs~~I~t~aLcgFaN~~SiGi~ig~~~~lap~r~~~ia~~~~ral~~g~la~~~tA~i 587 (591)
++||||||.|++++++ .+||||++|+|||||||||||||||++|++++++||||+|++|+++|++++||++|+|||||
T Consensus 321 v~NEFVA~~~l~~~~~--~ls~~t~~Iit~aLcgFANfsSIgi~iG~~~~l~p~r~~~var~g~kal~agtL~sllSAsI 398 (404)
T COG1972 321 VLNEFVAMLDLSKYLK--TLSERTVAIITFALCGFANFSSIGIIVGGLKGLAPKRRSEVARLGLKALLAGTLVSLLSASI 398 (404)
T ss_pred HHHHHHHHHHHHHHHh--hcChhhheehhhhhhccccchHHHHHHhhhcccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999974 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q psy10535 588 VDNI 591 (591)
Q Consensus 588 aG~l 591 (591)
||+.
T Consensus 399 aGlf 402 (404)
T COG1972 399 AGLF 402 (404)
T ss_pred HHhh
Confidence 9973
No 4
>PF07662 Nucleos_tra2_C: Na+ dependent nucleoside transporter C-terminus; InterPro: IPR011657 This entry consists of nucleoside transport proteins. Q62773 from SWISSPROT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. Q62674 from SWISSPROT is a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine. It also transports the anti-viral nucleoside analogues AZT and ddC []. This entry covers the C terminus of this family of transporters.; PDB: 3TIJ_A.
Probab=100.00 E-value=1.6e-76 Score=581.66 Aligned_cols=209 Identities=48% Similarity=0.775 Sum_probs=175.1
Q ss_pred hHHHHhhhhhhHHHHHHhhcCCcccccccccccccccCCCCCCHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10535 381 HIITASIMTAPSALSYSKILYPETEISKTTISNIKKWKSDDLNVIDAACKGAQIGTEMVLGIIANIIAFVSFVAFCNAML 460 (591)
Q Consensus 381 ~lltAsvmsapaal~iaki~~Pet~~~~~~~~~~~~~~~~~~n~~~A~~~Ga~~g~~la~~I~a~lIafvalial~n~~l 460 (591)
||+|||+||+|+++++||+++||||+|+++.++.+. +++++|++||+++|+.||+|++++|+||||+|+|+++++|+++
T Consensus 1 yLltAsvmsaPaal~isKi~~Pet~~~~~~~~~~~~-~~~~~n~~~A~~~Ga~~g~~la~~I~a~LIafvalial~N~~l 79 (210)
T PF07662_consen 1 YLLTASVMSAPAALAISKIMYPETEESETKGEEEEE-KSEPQNFFDAISNGALDGLKLALNIGAMLIAFVALIALLNGVL 79 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS---S----------------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCCCCcccchhccc-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999876654333 6689999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCCHHHHHhhhHhHHHHHhCCCchhHHHHHHHHhhHhhhhhhhhhhhhhhhhhcCCCCchhhHHHHHHHh
Q psy10535 461 IWFGSLVGVEDLTIEFIFGKIFIPLTWIMGVEPSQCEEVARLIGLKTVINEFVAYKELGRVKKLGLLSPRSEAIATYSLC 540 (591)
Q Consensus 461 ~~~g~~~g~~~ltl~~ilgyif~P~a~lmGvp~~d~~~vg~l~g~K~v~NEFvAy~~l~~~~~~~~ls~rs~~I~t~aLc 540 (591)
+|+|+++|++++|||.++||+|+|+||+|||||+|+.++|++||||+++||||||+||++++++ .+||||++|+|||||
T Consensus 80 ~~ig~~~g~~~lsl~~ilGyif~P~awlmGvp~~e~~~vg~lmG~K~v~NEFVAy~~L~~~~~~-~ls~rs~~I~tyaLc 158 (210)
T PF07662_consen 80 GWIGSLFGIEGLSLQQILGYIFSPLAWLMGVPWSEALTVGSLMGTKTVLNEFVAYQDLAKLIAA-WLSPRSQAIATYALC 158 (210)
T ss_dssp HHHHGGGT-TT--HHHHHHHHHHHHHHHTT--GGGHHHHHHHHHHHHHT-HHHHHHHHGGGGST----HHHHHHHHHHT-
T ss_pred HHHhhhcCCccccHHHHHhhhhhHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999643 599999999999999
Q ss_pred cccChhhhHHHHhhhcccCCCcccchHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy10535 541 GFANPGSVGCLIATLNTLVPSQRRNTIDLAFRAFIGGCVVCLLTACIVDNI 591 (591)
Q Consensus 541 gFaN~~SiGi~ig~~~~lap~r~~~ia~~~~ral~~g~la~~~tA~iaG~l 591 (591)
|||||||+|||+|++++|+||||+|++|+++||+++|++||+|||||||++
T Consensus 159 GFAN~sSiGI~iG~i~~laP~r~~~ia~l~~ral~agtla~~mtA~iaG~l 209 (210)
T PF07662_consen 159 GFANFSSIGIQIGGIGALAPERRSDIAKLGFRALIAGTLASLMTACIAGIL 209 (210)
T ss_dssp S--STHHHHHHHHHTGGG-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999974
No 5
>COG1972 NupC Nucleoside permease [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-33 Score=294.72 Aligned_cols=277 Identities=19% Similarity=0.333 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHhHHHHHHHHHhhhcCceeeecc
Q psy10535 81 KRRLISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFLEFAYQGAAFVYGD 160 (591)
Q Consensus 81 ~~~l~sl~Gl~v~l~ia~l~S~nrk~I~Wr~V~~gl~lQ~ilal~vL~t~~G~~if~~is~~~~~lL~~a~~G~~FvFG~ 160 (591)
|++++|++|++++++++|++|+|||+||||+|++++.+|+.+++++++||.|+++++++++.++++++|+++|++|+||+
T Consensus 1 m~~l~~ilGl~v~l~ia~l~S~nRK~I~~rti~~~lviQv~la~~~L~~p~G~~~l~~~~~~v~~li~~a~~Gi~FvFG~ 80 (404)
T COG1972 1 MEILISILGLAVLLGIAFLFSSNRKAIRWRTVIGALVIQVLLALFMLYTPAGQWALRGLANGVEKLIAYANAGINFVFGS 80 (404)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCceeeccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccch---hhhHHHHHHHHHhh-------------hhh------eecchhhHHHHHHHHHHHHHH---------------
Q psy10535 161 EIVTV---RISVQIILSIAFVI-------------FIL------IDAWDQKRRLISLLGFGVFIL--------------- 203 (591)
Q Consensus 161 l~~~~---~fFf~~Ll~Ivfi~-------------fli------~~~~~~~~rL~sl~Gi~v~l~--------------- 203 (591)
+.+++ .|++.+++||+|++ |++ ++|..+++|+||+.+...+++
T Consensus 81 l~~~~~gf~Fa~~VL~~IiF~saLi~iLyy~gIlp~vI~~iG~~l~K~lg~sk~ES~~a~a~iflGqtE~pl~vk~~l~~ 160 (404)
T COG1972 81 LADPKAGFIFAFRVLPPIIFISALISILYYIGILPLVIRIIGGGLQKALGTSKLESFSAVANIFLGQTEAPLVVKPYLGK 160 (404)
T ss_pred ccCCCCceeeeHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHhCCccccchhHHhhhh
Confidence 99764 47789999999973 222 589999999999999999888
Q ss_pred ---------HHH--------HhcCCCCC-cchHHHHHHHHHHHhhhhheeecchhHHHHHHhhHHHHHHHhhhcCCc-ee
Q psy10535 204 ---------LGY--------VFSKYPNR-VPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFLEFAYQGA-AF 264 (591)
Q Consensus 204 ---------ia~--------llS~~rk~-I~wr~Vi~gL~lQ~~lalivl~~~~G~~~~~~i~~~v~~ll~~~~~G~-~F 264 (591)
.+- .+-.|..+ +|.+|++.+..++..-++++.|..+|++.-+. +..++ .+.++++. +|
T Consensus 161 mt~selftv~~~gmasVsgsilg~Y~~mgvp~~yllaAs~m~~p~gli~Akii~P~t~~~~--~~~~~-~~~~~e~~~n~ 237 (404)
T COG1972 161 MSRSELFTVMASGMASVSGSILGGYASMGVPPEYLLAASFMNAPGGLLFAKLINPYTEDEQ--DAEDD-LSNDEEGPKNF 237 (404)
T ss_pred ccHhHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchHHHHHHhcCCCCCCcc--chhhh-hcccccccccH
Confidence 111 11147788 99999999999999999999999999976332 22333 55556555 66
Q ss_pred --ecCcccccccceehhhHhHHHHHHHHHHHHHHHh-----h------h-HHHHHHHHHHHHHHHhCCCcchhhhh----
Q psy10535 265 --VYGDEIVFVYHVFAFKVLSVIFFMSFIIQICFYY-----G------W-LQSIFLKLGWLLQVSLGTTVAESVNT---- 326 (591)
Q Consensus 265 --vfG~~~~~~~~~Faf~VLp~IIffsaLisiLyy~-----G------i-mq~ii~~i~~~l~~~mG~s~~Es~~A---- 326 (591)
..+|+.. +|++.|.+|.+++|.|.++++++|.+ | + +|.+++|++.|++++||+|+.|+..|
T Consensus 238 ida~a~ga~-~G~klAl~VgAmLiaFVaLialiN~ilg~~gg~~g~~~lsl~~IlGyvfaP~AflmGvPw~eA~~aGsli 316 (404)
T COG1972 238 IEAAAEGAL-TGLKLALNVGAMLIAFVALIALINGILGGVGGWFGISGLSLEQILGYVFAPLAFLMGVPWSEALQAGSLI 316 (404)
T ss_pred HHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 5677776 89999999999999999999999963 2 2 89999999999999999999999999
Q ss_pred ----hhhhcccccccceeeccccccCChhh--HHHHHhhhhhhhH
Q psy10535 327 ----CASVFLGMTEAPLLIKPYLPDLTRSE--LTAVMLGGFSTVA 365 (591)
Q Consensus 327 ----aaniFlGqtEapllikpyl~~mt~se--l~~vm~~G~atia 365 (591)
+.|.|+.+.| .+||++++|+.- +-+..-||||-.|
T Consensus 317 g~Klv~NEFVA~~~----l~~~~~~ls~~t~~Iit~aLcgFANfs 357 (404)
T COG1972 317 GTKLVLNEFVAMLD----LSKYLKTLSERTVAIITFALCGFANFS 357 (404)
T ss_pred HHHHHHHHHHHHHH----HHHHHhhcChhhheehhhhhhccccch
Confidence 7899999866 678888777543 3455556766554
No 6
>TIGR00804 nupC nucleoside transporter. One human homologue(CNT1) transports pyrimidine nucleosides and adenosine, but deoxyadenosine and guanosine are poor substrates of this permease. Another (CNT2) is selective for purine nucleosides. Alteration of just a few amino acyl residues in TMSs 7 and 8 interconverts their specificities.
Probab=99.97 E-value=1.3e-30 Score=276.73 Aligned_cols=285 Identities=20% Similarity=0.339 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHhHHHHHHHHHhhhcCceeeeccccc
Q psy10535 84 LISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFLEFAYQGAAFVYGDEIV 163 (591)
Q Consensus 84 l~sl~Gl~v~l~ia~l~S~nrk~I~Wr~V~~gl~lQ~ilal~vL~t~~G~~if~~is~~~~~lL~~a~~G~~FvFG~l~~ 163 (591)
++|++|++++++++|++|+|||+||||+|.+|+.+|+++|++++|||.|+++++++++.++++++|+++|++|+||++.+
T Consensus 1 l~~l~Gi~~~l~ia~l~S~nRk~I~wr~V~~gl~lQ~~la~~vl~~~~G~~~~~~i~~~v~~ll~~a~~G~~FvFG~l~~ 80 (401)
T TIGR00804 1 LISFVGLVVFILIAFLCSSNKKAISWRTVVSALVLQFLLGLIVLRTPPGFWAFQGLADQIQILLSYANEGSSFVFGPPLV 80 (401)
T ss_pred CeehHHHHHHHHHHHHHhCCCCcCCchHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhCceeecCcccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred c--hhhhHHHHHHHHHhh-------------hhh------eecchhhHHHHHHHHHHHHHHH------------------
Q psy10535 164 T--VRISVQIILSIAFVI-------------FIL------IDAWDQKRRLISLLGFGVFILL------------------ 204 (591)
Q Consensus 164 ~--~~fFf~~Ll~Ivfi~-------------fli------~~~~~~~~rL~sl~Gi~v~l~i------------------ 204 (591)
+ ..|+|+++++|+|++ |++ .+|..++++.||+.+...+++-
T Consensus 81 ~~~fiFaf~vLp~IiFfsal~siLyylgimq~iV~~~g~~l~k~~g~s~~Es~~aaaniFlGqtEapl~ikpyl~~mT~s 160 (401)
T TIGR00804 81 QDLFVFAFQVLPIIIFFSALISILYYLGIMQWVIRKIGWFLQKAMGTTKLESFSAAANIFLGQTEAPLVIRPYLGDMTDS 160 (401)
T ss_pred ccceeeHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHccCCcchhhhHHhHhhCCHH
Confidence 4 357789999999973 222 4777788888888888887771
Q ss_pred ---H-----------HHhcCCCCC-cchHHHHHHHHHHHhhhhheeecchhHHHHHHhhHHHHHHHhhhcCCcee--ecC
Q psy10535 205 ---G-----------YVFSKYPNR-VPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFLEFAYQGAAF--VYG 267 (591)
Q Consensus 205 ---a-----------~llS~~rk~-I~wr~Vi~gL~lQ~~lalivl~~~~G~~~~~~i~~~v~~ll~~~~~G~~F--vfG 267 (591)
+ -.+-.|-.. +|.++++.+..+...-++.+.|.-.|++--. -.+..++. +..++..++ ..+
T Consensus 161 EL~~im~~GmatIaGsvl~aY~~~gv~~~~LltAsvmsaPaal~~aki~~Pete~~-~~~~~~~~-~~~~~~~n~~dA~~ 238 (401)
T TIGR00804 161 ELFTVMTSGMATIAGSVLGAYISMGVPATYLIAASVMAAPCALAFAKLIYPEVEES-KEKSEEDV-KLEEGDQNFFEAAS 238 (401)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhHHHHHHHhhcCCCCCCc-cccccccc-ccccCCcCHHHHHH
Confidence 0 011124444 8999999999999999999999999975211 00100111 111222444 445
Q ss_pred cccccccceehhhHhHHHHHHHHHHHHHHHh--------h---h-HHHHHHHHHHHHHHHhCCCcchhhhh--------h
Q psy10535 268 DEIVFVYHVFAFKVLSVIFFMSFIIQICFYY--------G---W-LQSIFLKLGWLLQVSLGTTVAESVNT--------C 327 (591)
Q Consensus 268 ~~~~~~~~~Faf~VLp~IIffsaLisiLyy~--------G---i-mq~ii~~i~~~l~~~mG~s~~Es~~A--------a 327 (591)
++.. ||...+.++.+++|.|.|+++++|+. | + +|++++|+.+|++|+||+|+.|+..+ +
T Consensus 239 ~Ga~-~G~kla~~I~amLIafvaLialiN~~l~~~g~~~g~~~lslq~ilGyif~PlawlmGvp~~e~~~~g~LmG~K~v 317 (401)
T TIGR00804 239 NGAL-AGVKVVANVAAMLIAFVALLALINGILSWVGGWVGYGGLSFQLIFGYVFRPLAFLMGVPWSDAPLVAQLMGTKLA 317 (401)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHH
Confidence 5554 79999999999999999999999984 3 3 89999999999999999999999998 6
Q ss_pred hhhcccccccceeeccccccC----ChhhH-HHHHhhhhhhhH--HHHHHHHHhc
Q psy10535 328 ASVFLGMTEAPLLIKPYLPDL----TRSEL-TAVMLGGFSTVA--GTVFAAYTSL 375 (591)
Q Consensus 328 aniFlGqtEapllikpyl~~m----t~sel-~~vm~~G~atia--gsvl~aY~~~ 375 (591)
.|.|+...+= +|+.+.. .||++ .+..-||||-.+ |=.+++.-.+
T Consensus 318 ~NEFVAy~~L----~~~~~~~~~ls~rs~~I~tyaLcGFANfsSiGI~iGgi~~l 368 (401)
T TIGR00804 318 VNEFVAYLDL----SQYLQTRLWLSPKTEAIITFALCGFANFSSIGIILGGLGSL 368 (401)
T ss_pred HhhHHHHHHH----HHhhhcccccChhhhHhHHhhhhccccHHHHHHHHHHHhhc
Confidence 6999998765 4444322 35664 567778888775 3444455554
No 7
>PF01773 Nucleos_tra2_N: Na+ dependent nucleoside transporter N-terminus; InterPro: IPR002668 This entry contains nucleoside transport proteins. S282_RAT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. S281_RAT is a a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine it also transports the anti-viral nucleoside analogues AZT and ddC [].; GO: 0005415 nucleoside:sodium symporter activity, 0006810 transport, 0016020 membrane; PDB: 3TIJ_A.
Probab=99.84 E-value=1.8e-21 Score=163.84 Aligned_cols=74 Identities=31% Similarity=0.717 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHhHHHHHHHHHhhhcCceeeeccc
Q psy10535 88 LGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFLEFAYQGAAFVYGDE 161 (591)
Q Consensus 88 ~Gl~v~l~ia~l~S~nrk~I~Wr~V~~gl~lQ~ilal~vL~t~~G~~if~~is~~~~~lL~~a~~G~~FvFG~l 161 (591)
+|++++++++|++|+|||+||||+|++|+.+|+++|++++|||.|+++++++++.++++++|+++|++|+||++
T Consensus 1 lGi~v~l~ia~l~S~~rk~I~wr~V~~gl~lQ~~la~~vl~~~~G~~~~~~i~~~~~~ll~~~~~G~~FvFG~l 74 (75)
T PF01773_consen 1 LGILVLLAIAWLFSENRKAIKWRTVIWGLGLQFVLALFVLKTPAGRDAFEWISDGFTALLDYANAGSSFVFGDL 74 (75)
T ss_dssp HHHHHHHHHHHHH-S-GGG--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CcHHHHHHHHHHHHCCCCcCChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhCCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999986
No 8
>PF01773 Nucleos_tra2_N: Na+ dependent nucleoside transporter N-terminus; InterPro: IPR002668 This entry contains nucleoside transport proteins. S282_RAT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. S281_RAT is a a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine it also transports the anti-viral nucleoside analogues AZT and ddC [].; GO: 0005415 nucleoside:sodium symporter activity, 0006810 transport, 0016020 membrane; PDB: 3TIJ_A.
Probab=99.78 E-value=7e-20 Score=154.17 Aligned_cols=73 Identities=32% Similarity=0.739 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHhhhhheeecchhHHHHHHhhHHHHHHHhhhcCCceeecCc
Q psy10535 196 LGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFLEFAYQGAAFVYGD 268 (591)
Q Consensus 196 ~Gi~v~l~ia~llS~~rk~I~wr~Vi~gL~lQ~~lalivl~~~~G~~~~~~i~~~v~~ll~~~~~G~~FvfG~ 268 (591)
+|+++++.++|++|+|||+||||+|++|+.+|+++|++++|||.|++++++++++++++++|+++|++|+||+
T Consensus 1 lGi~v~l~ia~l~S~~rk~I~wr~V~~gl~lQ~~la~~vl~~~~G~~~~~~i~~~~~~ll~~~~~G~~FvFG~ 73 (75)
T PF01773_consen 1 LGILVLLAIAWLFSENRKAIKWRTVIWGLGLQFVLALFVLKTPAGRDAFEWISDGFTALLDYANAGSSFVFGD 73 (75)
T ss_dssp HHHHHHHHHHHHH-S-GGG--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CcHHHHHHHHHHHHCCCCcCChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999996
No 9
>KOG3747|consensus
Probab=98.86 E-value=6.9e-09 Score=112.68 Aligned_cols=238 Identities=22% Similarity=0.273 Sum_probs=130.4
Q ss_pred hhHHHHHHhHHHHHHHHHhhhcCceeeecccccch-hhhHHHHHHHHHhhhh-------------h------eecchhhH
Q psy10535 131 LGRYVLECIGHHVQTFLEFAYQGAAFVYGDEIVTV-RISVQIILSIAFVIFI-------------L------IDAWDQKR 190 (591)
Q Consensus 131 ~G~~if~~is~~~~~lL~~a~~G~~FvFG~l~~~~-~fFf~~Ll~Ivfi~fl-------------i------~~~~~~~~ 190 (591)
.||.+|+|++++++.+|+||++|++|||||...+. .|.|..+..++|.+.+ + .+-..++.
T Consensus 226 ~G~~~Fq~Lg~~V~~FL~Ya~~GA~FVFGd~i~d~~VFaF~~LpiiifFS~vvSiLyYlG~mQwvl~K~~W~mqv~~GTT 305 (602)
T KOG3747|consen 226 TGRWIFQWLGEQVQIFLEYAQAGASFVFGDNICDLAVFAFAILPIIIFFSAVVSILYYLGLMQWVLQKSGWFMQVTIGTT 305 (602)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCceEeecchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 58999999999999999999999999999988776 4555655555554211 1 01111222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCC------------------------------------cchHHHHHHHHHHHhhhhhe
Q psy10535 191 RLISLLGFGVFILLGYVFSKYPNR------------------------------------VPWKIVIWGVIMQLAIGLVT 234 (591)
Q Consensus 191 rL~sl~Gi~v~l~ia~llS~~rk~------------------------------------I~wr~Vi~gL~lQ~~laliv 234 (591)
-.+|+..-..+++ -+++.|=. .+....+.+-++-.--++-+
T Consensus 306 ~~ESv~aagniFl---gmTEaPLlIrPYl~~lT~SElhaImTsGfAtvaGTVlgAYvsfGa~as~LitASVmaAP~sLA~ 382 (602)
T KOG3747|consen 306 PCESVNAAGNIFL---GMTEAPLLIRPYLEKLTKSELHAIMTSGFATVAGTVLGAYVSFGASASSLITASVMAAPASLAC 382 (602)
T ss_pred hhhhhhhhhhhee---ccccCceeechhhhhhhHHHHHHHHhccchhhhhhhHHHHHhcCCCHHHHHHHHHHhchHHHHH
Confidence 2333332222221 12222222 23344444444444444444
Q ss_pred eecchhHHHHHHhhHHHHHH-HhhhcCCcee-ecCcccccccceehhhHhHHHHHHHHHHHHHHHh-----------hh-
Q psy10535 235 IRLSLGRYVLECIGHHVQTF-LEFAYQGAAF-VYGDEIVFVYHVFAFKVLSVIFFMSFIIQICFYY-----------GW- 300 (591)
Q Consensus 235 l~~~~G~~~~~~i~~~v~~l-l~~~~~G~~F-vfG~~~~~~~~~Faf~VLp~IIffsaLisiLyy~-----------Gi- 300 (591)
.|.-.|..- |-+. +.+++ ++.++++.-+ .-..... +.-...+++.+.+|.|-|+.+.|+-. |+
T Consensus 383 sKL~yPEtE-Es~~-~ee~~kLe~~~~~~lldaassga~-aav~~V~~I~anlIaflAllaFlna~~swiGdLig~~glt 459 (602)
T KOG3747|consen 383 SKLFYPETE-ESIT-KEEDIKLESGDDRNLLDAASSGAV-AAVPIVLNIAANLIAFLALLAFLNAALSWIGDLIGYDGLT 459 (602)
T ss_pred hhhcCCccc-cccc-cccccccccCCcccHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 443333321 0000 01111 1222222111 0010111 12345678888899999999888762 55
Q ss_pred HHHHHHHHHHHHHHHhCCCcchhhhh--------hhhhccccccc-ceeeccccccCChhhHHHH-HhhhhhhhH--HHH
Q psy10535 301 LQSIFLKLGWLLQVSLGTTVAESVNT--------CASVFLGMTEA-PLLIKPYLPDLTRSELTAV-MLGGFSTVA--GTV 368 (591)
Q Consensus 301 mq~ii~~i~~~l~~~mG~s~~Es~~A--------aaniFlGqtEa-pllikpyl~~mt~sel~~v-m~~G~atia--gsv 368 (591)
+|+|..|+..|+.+.||+++.+.... .-|.|+.--.- --+++.- +-=-|||+++. .-+|||-.+ |=+
T Consensus 460 Fq~I~syif~Pl~fmMGV~w~dc~~VA~lvg~KtfiNEFVAY~~Lsg~~v~~~-kisvrs~~iaTfalCGFaN~sSlGI~ 538 (602)
T KOG3747|consen 460 FQMIFSYIFIPLVFMMGVPWEDCLLVAQLVGTKTFINEFVAYENLSGELVKGG-KISVRSELIATFALCGFANFSSLGIQ 538 (602)
T ss_pred HHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC-ccchhHHHHHHHHHhccCCccchhee
Confidence 79999999999999999999988765 56777642110 0122210 01237888764 458888765 333
Q ss_pred HHHHHhc
Q psy10535 369 FAAYTSL 375 (591)
Q Consensus 369 l~aY~~~ 375 (591)
+++--+|
T Consensus 539 ig~Ltsm 545 (602)
T KOG3747|consen 539 IGGLTSM 545 (602)
T ss_pred ecccccc
Confidence 4444444
No 10
>PF07662 Nucleos_tra2_C: Na+ dependent nucleoside transporter C-terminus; InterPro: IPR011657 This entry consists of nucleoside transport proteins. Q62773 from SWISSPROT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. Q62674 from SWISSPROT is a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine. It also transports the anti-viral nucleoside analogues AZT and ddC []. This entry covers the C terminus of this family of transporters.; PDB: 3TIJ_A.
Probab=98.14 E-value=4.2e-06 Score=83.62 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhhhhheeecchhHHHHHHhhHHHHHHHhhhcCCcee--ecCcccccccceehhhHhHHHHHHHHHHHHHH
Q psy10535 219 IVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFLEFAYQGAAF--VYGDEIVFVYHVFAFKVLSVIFFMSFIIQICF 296 (591)
Q Consensus 219 ~Vi~gL~lQ~~lalivl~~~~G~~~~~~i~~~v~~ll~~~~~G~~F--vfG~~~~~~~~~Faf~VLp~IIffsaLisiLy 296 (591)
|++.+..++..-++.+.|.-.|++.-+.-.+ ++..+ .++..++ ..+++.. +|...+.++.+++|.|.|+++++|
T Consensus 1 yLltAsvmsaPaal~isKi~~Pet~~~~~~~--~~~~~-~~~~~n~~~A~~~Ga~-~g~~la~~I~a~LIafvalial~N 76 (210)
T PF07662_consen 1 YLLTASVMSAPAALAISKIMYPETEESETKG--EEEEE-KSEPQNFFDAISNGAL-DGLKLALNIGAMLIAFVALIALLN 76 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS---S------------------SSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCCCCcccc--hhccc-ccccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998865322211 11122 3444555 5566665 899999999999999999999999
Q ss_pred Hh--------h---h-HHHHHHHHHHHHHHHhCCCcchhhhh--------hhhhcccccccceeecccccc-CC-hhhH-
Q psy10535 297 YY--------G---W-LQSIFLKLGWLLQVSLGTTVAESVNT--------CASVFLGMTEAPLLIKPYLPD-LT-RSEL- 353 (591)
Q Consensus 297 y~--------G---i-mq~ii~~i~~~l~~~mG~s~~Es~~A--------aaniFlGqtEapllikpyl~~-mt-~sel- 353 (591)
+. | + +|++++|+++|++|+||+|+.|+..+ +.|.|+...|= .++.++ ++ ||+.
T Consensus 77 ~~l~~ig~~~g~~~lsl~~ilGyif~P~awlmGvp~~e~~~vg~lmG~K~v~NEFVAy~~L----~~~~~~~ls~rs~~I 152 (210)
T PF07662_consen 77 GVLGWIGSLFGIEGLSLQQILGYIFSPLAWLMGVPWSEALTVGSLMGTKTVLNEFVAYQDL----AKLIAAWLSPRSQAI 152 (210)
T ss_dssp HHHHHHHGGGT-TT--HHHHHHHHHHHHHHHTT--GGGHHHHHHHHHHHHHT-HHHHHHHH----GGGGST---HHHHHH
T ss_pred HHHHHHhhhcCCccccHHHHHhhhhhHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhccCHHHHHH
Confidence 93 3 4 89999999999999999999999988 78999987663 333333 43 3443
Q ss_pred HHHHhhhhhhhH--HHHHHHHHhc
Q psy10535 354 TAVMLGGFSTVA--GTVFAAYTSL 375 (591)
Q Consensus 354 ~~vm~~G~atia--gsvl~aY~~~ 375 (591)
.+..-||||-.+ |-.+++.-++
T Consensus 153 ~tyaLcGFAN~sSiGI~iG~i~~l 176 (210)
T PF07662_consen 153 ATYALCGFANFSSIGIQIGGIGAL 176 (210)
T ss_dssp HHHHT-S--STHHHHHHHHHTGGG
T ss_pred HHHHHHhccchhHHHHHHHHHhcc
Confidence 567778888776 4555555555
No 11
>PF07670 Gate: Nucleoside recognition; InterPro: IPR011642 This region in the nucleoside transporter proteins are responsible for determining nucleoside specificity in the human CNT1 and CNT2 proteins (e.g. O00337 from SWISSPROT) []. In the FeoB proteins (e.g. O25396 from SWISSPROT), which are believed to be Fe2+ transporters, it includes the membrane pore region, so the function of this region is likely to be more general than just nucleoside specificity []. This family may represent the pore and gate, with a wide potential range of specificity. Hence its name - Gate.; GO: 0001882 nucleoside binding; PDB: 3TIJ_A.
Probab=97.64 E-value=0.00022 Score=63.10 Aligned_cols=95 Identities=21% Similarity=0.171 Sum_probs=70.9
Q ss_pred hhHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCcchhhhhhhhhcccccccceeeccc-------cccCChh
Q psy10535 279 FKVLSVIFFMSFIIQICFYYGWLQSIFLKLGWLLQVSLGTTVAESVNTCASVFLGMTEAPLLIKPY-------LPDLTRS 351 (591)
Q Consensus 279 f~VLp~IIffsaLisiLyy~Gimq~ii~~i~~~l~~~mG~s~~Es~~AaaniFlGqtEapllikpy-------l~~mt~s 351 (591)
.+++|+++.++.++.+|.|+|+++++-+.+.-.++++ |.|+..++..+.+.+=+....+.+.+.| .+.+|+.
T Consensus 2 ~~~~p~i~~~~~l~~iL~~~g~l~~i~~~l~P~~~~l-gLp~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ 80 (109)
T PF07670_consen 2 LRALPIIIPFSILIWILEESGLLERISRLLEPLFRPL-GLPGEAAIALILGFFSNEAGIATLAQLYGLGSALKQGGLSKR 80 (109)
T ss_dssp HHTHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH----HHHHHHHHHTTTS-TTTGGGGGGGG-------STT--HH
T ss_pred eeeHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc-CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhHhhhccCCCHH
Confidence 4789999999999999999999999999999998888 9999999999999999999999999999 8899999
Q ss_pred hHHHHHhhhhh-hhHHHHHHHHHh
Q psy10535 352 ELTAVMLGGFS-TVAGTVFAAYTS 374 (591)
Q Consensus 352 el~~vm~~G~a-tiagsvl~aY~~ 374 (591)
|.++.+..+.. +...+.+++|..
T Consensus 81 ~~~~~~l~~~~~~pc~~~~~~~~~ 104 (109)
T PF07670_consen 81 EAIALILFSSFYTPCIATIAVIVK 104 (109)
T ss_dssp HHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhhhhcccccccc
Confidence 99998886655 556666666654
No 12
>PRK10519 hypothetical protein; Provisional
Probab=95.83 E-value=0.18 Score=48.38 Aligned_cols=102 Identities=18% Similarity=0.187 Sum_probs=72.5
Q ss_pred CCCCHHHHHHHhHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHhhhHhHHHHHhCCCchhHHH
Q psy10535 420 DDLNVIDAACKGAQIGTEMVL-GIIANIIAFVSFVAFCNAMLIWFGSLVGVEDLTIEFIFGKIFIPLTWIMGVEPSQCEE 498 (591)
Q Consensus 420 ~~~n~~~A~~~Ga~~g~~la~-~I~a~lIafvalial~n~~l~~~g~~~g~~~ltl~~ilgyif~P~a~lmGvp~~d~~~ 498 (591)
+..|+.|...+||.+|++++. ++.-+++++.-++.+++.. | .-+.++.+|.|+..++|.|.+=..
T Consensus 3 ~~~~v~d~Fv~GakeG~~i~~~~iiP~li~~~v~I~iL~~s----G---------~ld~l~~~l~Pvm~llGLPgea~~- 68 (151)
T PRK10519 3 VKKNVTDIFIDGARKGFTIATTNLLPNVLMAFVIIQALNIT----G---------LLDLVGHIFGPVMALFGLPGEAAT- 68 (151)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----C---------HHHHHHHHHHHHHHHhCCCHHHHH-
Confidence 458999999999999999999 5999999998887766532 2 445688899999999999965322
Q ss_pred HHHHHhhHhhhhhhhhhhhhhhhhhcCCCCchhhHHHHHHH
Q psy10535 499 VARLIGLKTVINEFVAYKELGRVKKLGLLSPRSEAIATYSL 539 (591)
Q Consensus 499 vg~l~g~K~v~NEFvAy~~l~~~~~~~~ls~rs~~I~t~aL 539 (591)
.+=++..- =-.|..-+.++.+++.+|++-..+..-++
T Consensus 69 ---vll~g~ls-~~~a~~vl~~L~~~G~LT~~Q~~VL~~~~ 105 (151)
T PRK10519 69 ---VLLAAWMS-MGGAVGVAASLFTAGALTGHHVTILLPAI 105 (151)
T ss_pred ---HHHHHHHh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 12222222 23444445566667889988777765543
No 13
>PRK10519 hypothetical protein; Provisional
Probab=95.10 E-value=0.11 Score=49.98 Aligned_cols=124 Identities=18% Similarity=0.137 Sum_probs=91.6
Q ss_pred ccceehh-hHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCcchhhhhhhhhcccccccceeeccccc--cCC
Q psy10535 273 VYHVFAF-KVLSVIFFMSFIIQICFYYGWLQSIFLKLGWLLQVSLGTTVAESVNTCASVFLGMTEAPLLIKPYLP--DLT 349 (591)
Q Consensus 273 ~~~~Faf-~VLp~IIffsaLisiLyy~Gimq~ii~~i~~~l~~~mG~s~~Es~~AaaniFlGqtEapllikpyl~--~mt 349 (591)
+|+..++ +++|.++.+..++.++++.|.++++-+.++..+ +.+|.|+.-+..-....+-| .=+.-+..+..+ .||
T Consensus 17 eG~~i~~~~iiP~li~~~v~I~iL~~sG~ld~l~~~l~Pvm-~llGLPgea~~vll~g~ls~-~~a~~vl~~L~~~G~LT 94 (151)
T PRK10519 17 KGFTIATTNLLPNVLMAFVIIQALNITGLLDLVGHIFGPVM-ALFGLPGEAATVLLAAWMSM-GGAVGVAASLFTAGALT 94 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHhH-HHHHHHHHHHHHcCCCC
Confidence 7889999 699999999999999999999999999988888 69999997777776666665 333444444443 489
Q ss_pred hhhHHHHHhhhhhhhHHHHHHHHHh----cCCCcc---hHHHHhhhhhhHHHHHHhhc
Q psy10535 350 RSELTAVMLGGFSTVAGTVFAAYTS----LGVQAA---HIITASIMTAPSALSYSKIL 400 (591)
Q Consensus 350 ~sel~~vm~~G~atiagsvl~aY~~----~g~~~~---~lltAsvmsapaal~iaki~ 400 (591)
..|+..+...= --.||...=|.= -|++++ |++.-|++||.-|..+-+++
T Consensus 95 ~~Q~~VL~~~~--~l~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 150 (151)
T PRK10519 95 GHHVTILLPAI--YLMGSQVQYMGRILGVAEVNAKYYPHLIAVCIINALLAMLVMRLI 150 (151)
T ss_pred HHHHHHHHHHH--HHhchHHHHHHHhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 98876544321 223444433331 256666 68899999999999887765
No 14
>TIGR02871 spore_ylbJ sporulation integral membrane protein YlbJ. Members of this protein family are found exclusively in Firmicutes (low-GC Gram-positive bacterial) and are known from studies in Bacillus subtilis to be part of the sigma-E regulon. Mutation leads to a sporulation defect, confirming that members of this protein family, YlbJ, are sporulation proteins. This protein appears to be universal among endospore-forming bacteria, but is encoded by a pair ORFs distant from eash other in Symbiobacterium thermophilum IAM14863.
Probab=95.03 E-value=6.7 Score=42.85 Aligned_cols=179 Identities=9% Similarity=0.014 Sum_probs=110.3
Q ss_pred ehhhHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCcchhhhhhhhhcccccccceeecccc--ccCChhhHH
Q psy10535 277 FAFKVLSVIFFMSFIIQICFYYGWLQSIFLKLGWLLQVSLGTTVAESVNTCASVFLGMTEAPLLIKPYL--PDLTRSELT 354 (591)
Q Consensus 277 Faf~VLp~IIffsaLisiLyy~Gimq~ii~~i~~~l~~~mG~s~~Es~~AaaniFlGqtEapllikpyl--~~mt~sel~ 354 (591)
+.-+++|.+.-|--++.+|.++|.++.+=+.+...|+++.|+|+.-++..+++.+-|-.=...+....- .+.|+.|--
T Consensus 33 w~~~llPsLlpf~il~~lLi~~G~~~~~g~ll~pimrplf~lpg~~a~~li~g~l~GyP~Ga~~t~~ly~~g~it~~Ea~ 112 (362)
T TIGR02871 33 WFYSVFPSLFPFFIISELLINLGGVHFYGKLLEPILRPPFRVPGVGSFALVMGFLSGYPLGAKYSADLYEEKLITFEEAE 112 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHcCCchHHHHHHHHHHCCCCCHHHHH
Confidence 444899999999999999999999999999999999999999999998888777776655554444333 246776654
Q ss_pred HHHhhhhhhhHHHHHHHHHh---cCCC-cchHHHHhhhhhhHHH-HHHhhcCCccccccccccc--ccccCCCCCCHHHH
Q psy10535 355 AVMLGGFSTVAGTVFAAYTS---LGVQ-AAHIITASIMTAPSAL-SYSKILYPETEISKTTISN--IKKWKSDDLNVIDA 427 (591)
Q Consensus 355 ~vm~~G~atiagsvl~aY~~---~g~~-~~~lltAsvmsapaal-~iaki~~Pet~~~~~~~~~--~~~~~~~~~n~~~A 427 (591)
-+++-. ...+=.-+.+|+. ++-+ ..+++.++..-++-.. .+-+..+++.+++.++.+. ...+++++.+.-++
T Consensus 113 ~Ll~f~-nnssPlFiig~V~~~~l~~~~lg~~l~~~~yl~~l~~gll~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 191 (362)
T TIGR02871 113 RLLNFA-NNSGPLFIIGAVGTSMLNNPTLGYILLISHYLSCITMGLILRFYKRRKRKILSKKKKTFHIIRLKSKFPIGKT 191 (362)
T ss_pred HHHHHH-cCCChHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccCCChhhH
Confidence 333211 1122233444443 2222 2344444443333221 1122233322211111111 01123456677788
Q ss_pred HHHhHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy10535 428 ACKGAQIGTEMVLGIIANIIAFVSFVAFC 456 (591)
Q Consensus 428 ~~~Ga~~g~~la~~I~a~lIafvalial~ 456 (591)
..+...|+++....|++-+|-|=-++.++
T Consensus 192 l~~aI~~s~~til~IGGfIilFSVl~~il 220 (362)
T TIGR02871 192 LKEAIENAVKTILLVGGFVILFSVVISLL 220 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999998888776665554
No 15
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=84.09 E-value=91 Score=36.28 Aligned_cols=206 Identities=13% Similarity=0.116 Sum_probs=105.4
Q ss_pred ehhhHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCcchhhhhhhhhcccc-cccceeeccccccCChhhHHH
Q psy10535 277 FAFKVLSVIFFMSFIIQICFYYGWLQSIFLKLGWLLQVSLGTTVAESVNTCASVFLGM-TEAPLLIKPYLPDLTRSELTA 355 (591)
Q Consensus 277 Faf~VLp~IIffsaLisiLyy~Gimq~ii~~i~~~l~~~mG~s~~Es~~AaaniFlGq-tEapllikpyl~~mt~sel~~ 355 (591)
-....+|.|+.|-.++++|---|-|+++--.+=..|+| +|.+|---+.- .+|- .-.|-+.---.=.=.|+++.|
T Consensus 312 ~v~~flP~i~~~f~~l~~LEdsGYl~R~a~~mDr~m~~-~GL~Gk~~iPl----~~GfGCnvPaimatR~l~s~r~R~~t 386 (591)
T TIGR00437 312 AVLSFVPLIAILFLALSFLEDSGYLARAAFLMDGIMNK-FGLSGRAFIPL----ILGFGCNVPAIMATRTLETRRERLLT 386 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH-cCCCcccchhh----HhccCchHHHHHHhcccCChhHHHHH
Confidence 45688999999999999999999998876666666666 67776433321 1110 000100000000113677788
Q ss_pred HHhhhhhhhHHHHHHHHHh-----cCCC-cchHHHHhhhhhhHHHHHHhhc----CCcccccccccccccccCCCCCCHH
Q psy10535 356 VMLGGFSTVAGTVFAAYTS-----LGVQ-AAHIITASIMTAPSALSYSKIL----YPETEISKTTISNIKKWKSDDLNVI 425 (591)
Q Consensus 356 vm~~G~atiagsvl~aY~~-----~g~~-~~~lltAsvmsapaal~iaki~----~Pet~~~~~~~~~~~~~~~~~~n~~ 425 (591)
+++..|.+.++=.=.-|.. ++.. +-.+..--+++.-.++..+|++ .|..+++ -..|+|+-+ ..-+
T Consensus 387 ~l~~pf~~CsArl~v~~~l~~~~ff~~~~~~~~~~~y~~~~~~~~~~~~il~~~~~~~~~~~----~imElPpyr-~P~~ 461 (591)
T TIGR00437 387 ALVIPFMSCSARLPVIVLLFAAAFPGKYGGIVIFSLYLLGFVAALITARLLPGEVFKGERSP----FIMELPPYR-LPRF 461 (591)
T ss_pred HHHHhcCCccchHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC----eeeeCCCCC-CCCH
Confidence 8777774433321111111 1111 1122222233344444444444 3322111 123454321 2223
Q ss_pred HHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHhhhHhHHHHHhCC--CchhHH
Q psy10535 426 DAACKGAQIGTEMVLGIIANIIAFVSFVAFCNAMLIWFGSLVGVEDLTIEFIFGKIFIPLTWIMGV--EPSQCE 497 (591)
Q Consensus 426 ~A~~~Ga~~g~~la~~I~a~lIafvalial~n~~l~~~g~~~g~~~ltl~~ilgyif~P~a~lmGv--p~~d~~ 497 (591)
..+-.-+.+=.|--+--+.-+|...+++-. ++..+| -|-.+-|+-..+|..+.|+.--+|. ||+-..
T Consensus 462 r~v~~~~w~r~~~fl~~A~~ii~~~siviw---~l~~~~--~~~~~~S~l~~~g~~~~P~~~p~g~~~~w~~~~ 530 (591)
T TIGR00437 462 RVVFIQTWTRLRSFIKKAGTIIVIGSVLIW---FLSSFP--GGKILESWLAAIGSIMAPLFVPLGKILDWFASV 530 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCC--CCchhhhHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 555555555555555555555554443322 222222 0112347788899999999999999 876543
No 16
>TIGR00947 2A73 probable bicarbonate transporter, IctB family. This family of proteins is suggested to transport inorganic carbon (HCO3-), based on the phenotype of a mutant of IctB in Synechococcus sp. strain PCC 7942. Bicarbonate uptake is used by many photosynthetic organisms including cyanobacteria. These organisms are able to concentrate CO2/HCO3- against a greater than ten-fold concentration gradient. Cyanobacteria may have several such carriers operating with different efficiencies. Note that homology to various O-antigen ligases, with possible implications for mutant cell envelope structure, might allow alternatives to the interpretation of IctB as a bicarbonate transport protein.
Probab=64.68 E-value=2.2e+02 Score=31.52 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=15.9
Q ss_pred cCceeeecccccchhhhHHHHHHHHHh
Q psy10535 152 QGAAFVYGDEIVTVRISVQIILSIAFV 178 (591)
Q Consensus 152 ~G~~FvFG~l~~~~~fFf~~Ll~Ivfi 178 (591)
.|...++|...+.+.+.....+.+.+.
T Consensus 159 ~~~~Rv~g~f~npN~la~~L~~~lpl~ 185 (425)
T TIGR00947 159 AGTTRVYSYLGNPNLLAGYLVPAIPLS 185 (425)
T ss_pred ccceeeeecCCChHHHHHHHHHHHHHH
Confidence 355677777766666665544444443
No 17
>PRK15445 arsenical pump membrane protein; Provisional
Probab=57.35 E-value=83 Score=34.55 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=10.3
Q ss_pred cchHHHHHHHHHHHhhh
Q psy10535 215 VPWKIVIWGVIMQLAIG 231 (591)
Q Consensus 215 I~wr~Vi~gL~lQ~~la 231 (591)
.+++...+++.+=--+|
T Consensus 355 ~~~~~l~~al~~ga~~g 371 (427)
T PRK15445 355 VIKEAMIYANVIGSDLG 371 (427)
T ss_pred chHHHHHHHHHHhcccC
Confidence 46777777765554444
No 18
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=56.23 E-value=11 Score=26.52 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=22.1
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHhccCCC
Q psy10535 74 LIDAWDQKRRLISLLGFGVFILLGYVFSKYPN 105 (591)
Q Consensus 74 ~~d~~~~~~~l~sl~Gl~v~l~ia~l~S~nrk 105 (591)
.++|.++.+....+.|+.++....+++.++||
T Consensus 2 LP~TG~~~~~~~~~~G~~l~~~~~~~~~~rk~ 33 (34)
T TIGR01167 2 LPKTGESGNSLLLLLGLLLLGLGGLLLRKRKK 33 (34)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHheeccc
Confidence 46788777777888898666665555555554
No 19
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=54.10 E-value=49 Score=36.88 Aligned_cols=81 Identities=16% Similarity=0.290 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHhccC--CCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHh
Q psy10535 62 QIILSIAFVIFILIDAWDQKRRLISLLGFGVFILLGYVFSKY--PNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECI 139 (591)
Q Consensus 62 ~~~~~~~~~~f~~~d~~~~~~~l~sl~Gl~v~l~ia~l~S~n--rk~I~Wr~V~~gl~lQ~ilal~vL~t~~G~~if~~i 139 (591)
...+.+.++.|...+.-+-..-.+.++|.+.+.....+-.+| +|++||.+++.--. =+.+|-..-++.. -+|+
T Consensus 272 ~~i~~~~i~lw~~~~~~~i~~~~va~~~~~ll~~~~il~~~d~~~~~i~W~~l~~~~g-~~~lg~~l~~sG~----~~~l 346 (471)
T PF00939_consen 272 LVIFLLTILLWITESFHGIDPAIVALLGAVLLFLPGILTWKDAAQKKIPWGTLFLFGG-ALSLGTALEKSGA----AKWL 346 (471)
T ss_pred hhhhhhhhhcccCcccCCCCHHHHHHHHHHHHHHHHhccHHHHHhcCCCchhHHHHHH-HHHHHHHHHhcCH----HHHH
Confidence 334444555565544333345677889999888888666664 58999998543211 1223444444444 4555
Q ss_pred HHHHHHHH
Q psy10535 140 GHHVQTFL 147 (591)
Q Consensus 140 s~~~~~lL 147 (591)
++.....+
T Consensus 347 a~~l~~~l 354 (471)
T PF00939_consen 347 ANVLLPLL 354 (471)
T ss_pred HHHHHHHc
Confidence 55555555
No 20
>PF12555 TPPK_C: Thiamine pyrophosphokinase C terminal; InterPro: IPR022215 This domain family is found in bacteria, and is approximately 50 amino acids in length. The proteins in this family catalyses the pyrophosphorylation of thiamine in yeast and synthesizes thiamine pyrophosphate (TPP), a thiamine coenzyme.
Probab=54.07 E-value=39 Score=26.85 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=34.3
Q ss_pred CCCCcchHHHHHHHH-HHHHHHHHHhhcchhHHHHHHhHHHHHHHH
Q psy10535 103 YPNRVPWKIVIWGVI-MQLAIGLVTIRLSLGRYVLECIGHHVQTFL 147 (591)
Q Consensus 103 nrk~I~Wr~V~~gl~-lQ~ilal~vL~t~~G~~if~~is~~~~~lL 147 (591)
+|.|++.+.+.+..+ .-+.++..+.-+|.|++.++.+.+..+.+.
T Consensus 7 Yrsris~~~~~~lvlaaLvav~v~l~~s~~g~~~~~~l~~~w~~~~ 52 (53)
T PF12555_consen 7 YRSRISGWALALLVLAALVAVAVALLISPAGQSFLDLLADTWNDLA 52 (53)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh
Confidence 688888776554443 455667778889999999999999887765
No 21
>COG0700 SpmB Uncharacterized membrane protein [Function unknown]
Probab=54.04 E-value=37 Score=32.96 Aligned_cols=65 Identities=18% Similarity=0.323 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHhhhHhHHHHHhCCCchhHHH
Q psy10535 420 DDLNVIDAACKGAQIGTEMVLGIIANIIAFVSFVAFCNAMLIWFGSLVGVEDLTIEFIFGKIFIPLTWIMGVEPSQCEE 498 (591)
Q Consensus 420 ~~~n~~~A~~~Ga~~g~~la~~I~a~lIafvalial~n~~l~~~g~~~g~~~ltl~~ilgyif~P~a~lmGvp~~d~~~ 498 (591)
+..+.-|...+||.||+.+|.++.-++.+-+=.++.+..- | .-+.++-++.|..=+.|.|. |+..
T Consensus 12 kkv~Vye~FVeGAKeGf~IA~~i~P~lv~~lv~i~~fr~s----G---------ald~v~~~l~pv~s~~G~p~-Ea~p 76 (162)
T COG0700 12 KKVPVYEMFVEGAKEGFTIATTILPYLVAMLVIIAAFRIS----G---------ALDWVGHILSPVMSLIGLPG-EAAP 76 (162)
T ss_pred cccchHHHHHhhcccceeehhhhhHHHHHHHHHHHHHHHh----h---------HHHHHHHHhhHHHHHcCCCh-hhhH
Confidence 3468899999999999999999988888766555554321 1 11234556778888999997 4433
No 22
>COG3314 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.81 E-value=1.6e+02 Score=33.18 Aligned_cols=85 Identities=21% Similarity=0.232 Sum_probs=50.4
Q ss_pred HhHHHHHHHHH-HHHHHHhhhHH---HHHHHHHHHHHHHhCCCcchhhhhhhhhcccccccceeecccc--c-cCChhhH
Q psy10535 281 VLSVIFFMSFI-IQICFYYGWLQ---SIFLKLGWLLQVSLGTTVAESVNTCASVFLGMTEAPLLIKPYL--P-DLTRSEL 353 (591)
Q Consensus 281 VLp~IIffsaL-isiLyy~Gimq---~ii~~i~~~l~~~mG~s~~Es~~AaaniFlGqtEapllikpyl--~-~mt~sel 353 (591)
.+-.+++|+++ .+.++.+|.+. .+.+.+..++.++=|.|. -.+..-|+|+--.-+++|.+- + +.|+.|
T Consensus 118 ~~~~i~~fa~~fls~l~~~glle~fg~l~~~imrpif~~pG~sa----ida~aSflG~g~lGlllt~~~y~e~~y~~re- 192 (427)
T COG3314 118 PLLTIVPFAGLFLSFLNSYGLLEFFGVLMEPIMRPIFQLPGRSA----IDALASFLGNGSLGLLLTDGFYEEGKYTPRE- 192 (427)
T ss_pred HHHHHHHHHHHHHHhhhcccceeeehhhhhhhhhhhhcCCCchH----HHHHHHHhcCCceeEeeehhhhhhhhccccc-
Confidence 34456666665 45665666653 344556666666555555 334455899999987776532 1 122222
Q ss_pred HHHHhhhhhhhHHHHHH
Q psy10535 354 TAVMLGGFSTVAGTVFA 370 (591)
Q Consensus 354 ~~vm~~G~atiagsvl~ 370 (591)
-++...||++|+-+-..
T Consensus 193 a~Ii~tgfs~VS~tf~~ 209 (427)
T COG3314 193 AVIIATGFSAVSATFGI 209 (427)
T ss_pred ceeecccchhHHHHHHH
Confidence 25778899988866443
No 23
>COG0700 SpmB Uncharacterized membrane protein [Function unknown]
Probab=52.13 E-value=40 Score=32.76 Aligned_cols=51 Identities=20% Similarity=0.081 Sum_probs=43.6
Q ss_pred cccceehhhHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCcchhh
Q psy10535 272 FVYHVFAFKVLSVIFFMSFIIQICFYYGWLQSIFLKLGWLLQVSLGTTVAESV 324 (591)
Q Consensus 272 ~~~~~Faf~VLp~IIffsaLisiLyy~Gimq~ii~~i~~~l~~~mG~s~~Es~ 324 (591)
++||..|.+.+|-++-.-..++.+.--|-|||+...+.+.++ ..|.|+ |.+
T Consensus 25 KeGf~IA~~i~P~lv~~lv~i~~fr~sGald~v~~~l~pv~s-~~G~p~-Ea~ 75 (162)
T COG0700 25 KEGFTIATTILPYLVAMLVIIAAFRISGALDWVGHILSPVMS-LIGLPG-EAA 75 (162)
T ss_pred ccceeehhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHH-HcCCCh-hhh
Confidence 489999999999999888889999999999999999877765 478887 544
No 24
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=46.09 E-value=3.7e+02 Score=28.02 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=17.2
Q ss_pred chHHHHhhhhhhHHHHHHhhcCCccccc
Q psy10535 380 AHIITASIMTAPSALSYSKILYPETEIS 407 (591)
Q Consensus 380 ~~lltAsvmsapaal~iaki~~Pet~~~ 407 (591)
.|++.|.+.... ++.++.+-.||.+++
T Consensus 94 ~yl~ia~~~~~~-~i~~~~~~~p~~~~~ 120 (310)
T TIGR01272 94 PYLLLAGALAVL-AIIFAFLPLPELQEA 120 (310)
T ss_pred HHHHHHHHHHHH-HHHHHHccCCCCCcc
Confidence 477666665554 457777778886543
No 25
>PF12555 TPPK_C: Thiamine pyrophosphokinase C terminal; InterPro: IPR022215 This domain family is found in bacteria, and is approximately 50 amino acids in length. The proteins in this family catalyses the pyrophosphorylation of thiamine in yeast and synthesizes thiamine pyrophosphate (TPP), a thiamine coenzyme.
Probab=44.09 E-value=43 Score=26.64 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=34.2
Q ss_pred CCCCcchHHHHHHHHHH-HhhhhheeecchhHHHHHHhhHHHHHHH
Q psy10535 211 YPNRVPWKIVIWGVIMQ-LAIGLVTIRLSLGRYVLECIGHHVQTFL 255 (591)
Q Consensus 211 ~rk~I~wr~Vi~gL~lQ-~~lalivl~~~~G~~~~~~i~~~v~~ll 255 (591)
||.+++.+++.+.+.-- +.++..+.-+|.|++.++.+.+..+.+.
T Consensus 7 Yrsris~~~~~~lvlaaLvav~v~l~~s~~g~~~~~~l~~~w~~~~ 52 (53)
T PF12555_consen 7 YRSRISGWALALLVLAALVAVAVALLISPAGQSFLDLLADTWNDLA 52 (53)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh
Confidence 89999888766554433 3466667788999999999999888764
No 26
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=40.87 E-value=3.6e+02 Score=26.47 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q psy10535 87 LLGFGVFILLGYVFSKYPNRVPWKIVIWGVI 117 (591)
Q Consensus 87 l~Gl~v~l~ia~l~S~nrk~I~Wr~V~~gl~ 117 (591)
-.+++++.+.+=+..+|++=|+||+.+.-.+
T Consensus 54 s~~lv~vfG~lTl~~~d~~fik~KpTii~~l 84 (176)
T PF04279_consen 54 SLVLVLVFGGLTLLFHDPRFIKWKPTIINWL 84 (176)
T ss_pred HHHHHHHHHHHHHHhCCcceeehhHHHHHHH
Confidence 3567777777888999999999999665444
No 27
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=39.31 E-value=5.2e+02 Score=27.87 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHhhhhhe-----ecchhhHHHHHHHHHHHHHHHHHHh
Q psy10535 166 RISVQIILSIAFVIFILI-----DAWDQKRRLISLLGFGVFILLGYVF 208 (591)
Q Consensus 166 ~fFf~~Ll~Ivfi~fli~-----~~~~~~~rL~sl~Gi~v~l~ia~ll 208 (591)
++....++|++++.-... +..+.-+|+.-+.+.+.+....+-+
T Consensus 130 ~~~~~~~~pl~~~~~~~~~~~~~~~~d~LGrl~~ii~~~~l~~~~~~l 177 (340)
T PF12794_consen 130 RWLIWVLVPLLFISIFAENLPDGLARDVLGRLAFIILLLLLAVFLWRL 177 (340)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 566777778777654432 1222346776666666666665533
No 28
>TIGR00935 2a45 arsenical pump membrane protein.
Probab=36.80 E-value=5.3e+02 Score=28.13 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=15.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHhHH
Q psy10535 105 NRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGH 141 (591)
Q Consensus 105 k~I~Wr~V~~gl~lQ~ilal~vL~t~~G~~if~~is~ 141 (591)
++++|.+++.-..+ +.++--+-+|.. .+++++
T Consensus 276 ~~i~w~~l~~~~g~-f~l~~~l~~tG~----~~~la~ 307 (429)
T TIGR00935 276 RGAPWQIVLFSAGM-YLVVEGLKNLGL----TEYLGG 307 (429)
T ss_pred HhCCcHHHHHHHHH-HHHHHHHHHCCH----HHHHHH
Confidence 46888885544332 233333334443 344544
No 29
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.75 E-value=5.8e+02 Score=27.64 Aligned_cols=273 Identities=19% Similarity=0.226 Sum_probs=153.2
Q ss_pred cceehhhHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC--cchhhhhhhhhcccccccceeeccccc--cCC
Q psy10535 274 YHVFAFKVLSVIFFMSFIIQICFYYGWLQSIFLKLGWLLQVSLGTT--VAESVNTCASVFLGMTEAPLLIKPYLP--DLT 349 (591)
Q Consensus 274 ~~~Faf~VLp~IIffsaLisiLyy~Gimq~ii~~i~~~l~~~mG~s--~~Es~~AaaniFlGqtEapllikpyl~--~mt 349 (591)
...|...++|+++.=.-+.+++-+.|+++.+=+. .+-.++.. +.|+.++-..-|+..|-+--+.+.|.+ +++
T Consensus 9 ~l~~l~kilpmi~~gl~la~~li~~~~l~k~~~~----~~~i~~~~~l~~~c~sa~~~~f~sptag~smL~~~~keg~l~ 84 (311)
T COG3366 9 TLTFLSKILPMIFVGLFLANLLIELGYLEKLSKL----TKPILRYLNLPEECGSAFATFFVSPTAGNSMLSEFYKEGKLN 84 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHhCCChHHHHHHHHHHhChhhhHHHHHHHHHcCCCc
Confidence 3457789999999988899999999988765443 34444444 257777766667776666666666654 466
Q ss_pred hhhH-HHHHhhhhhhhHHHHHHHHH-----hcCCCc------chHHHHhhhhhhHHHHHHhhcCCccccccccccccccc
Q psy10535 350 RSEL-TAVMLGGFSTVAGTVFAAYT-----SLGVQA------AHIITASIMTAPSALSYSKILYPETEISKTTISNIKKW 417 (591)
Q Consensus 350 ~sel-~~vm~~G~atiagsvl~aY~-----~~g~~~------~~lltAsvmsapaal~iaki~~Pet~~~~~~~~~~~~~ 417 (591)
+.|. -+.+-..|=+.=+.++--|+ .+|... --+++|..-++++- +..|+.--+.|.+.++.+ +.+
T Consensus 85 eREvi~~slln~FP~~v~~~~~f~~Pv~lpiLG~~~GliYv~i~~~va~~~tlig~-l~g~~~l~~~~~~~~~~~--~~~ 161 (311)
T COG3366 85 EREVIVASLLNAFPTGVRHAFTFYAPVALPILGLELGLIYVGIRVLVALLKTLIGV-LYGKISLKNDDIKFPSNS--ELS 161 (311)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCCccCcccC--CCC
Confidence 6665 44444455555455444444 233222 13466667777766 444443333221111111 111
Q ss_pred CCCCCCHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHhhhHhHHHHHhCCCchhHH
Q psy10535 418 KSDDLNVIDAACKGAQIGTEMVLGIIANIIAFVSFVAFCNAMLIWFGSLVGVEDLTIEFIFGKIFIPLTWIMGVEPSQCE 497 (591)
Q Consensus 418 ~~~~~n~~~A~~~Ga~~g~~la~~I~a~lIafvalial~n~~l~~~g~~~g~~~ltl~~ilgyif~P~a~lmGvp~~d~~ 497 (591)
.+ .-=||.-++ +-.|...-++..+.-...++.++- ++.+-+.+.-..-|++-..+.|.+...
T Consensus 162 ~~---~~k~a~~~~--kt~k~~~rv~~~~~~~~~li~~L~-------------~~G~~d~~~~~~~pl~~~L~lp~eav~ 223 (311)
T COG3366 162 IP---ANKEAVKEA--KTFKVFKRVIPVVVPATVLIFFLI-------------ELGLFDYVEEFLHPLTNYLPLPPEAVT 223 (311)
T ss_pred cc---hHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHH-------------HhhHHHHHHHHhhhHhhhcCCCcchHH
Confidence 11 111222222 445555444443333332332211 112333444445588999999987765
Q ss_pred HHHHHHhhHhhhhhhhhhhhhhhhhhcCCCCchhhHHHHHHHhcccChhhhHHHHhhhcccCCCcccchHH-HHHHHHHH
Q psy10535 498 EVARLIGLKTVINEFVAYKELGRVKKLGLLSPRSEAIATYSLCGFANPGSVGCLIATLNTLVPSQRRNTID-LAFRAFIG 576 (591)
Q Consensus 498 ~vg~l~g~K~v~NEFvAy~~l~~~~~~~~ls~rs~~I~t~aLcgFaN~~SiGi~ig~~~~lap~r~~~ia~-~~~ral~~ 576 (591)
.+.. -+.|-=.||.--++++++|.+|++-.+++-. +-|..|+ + ++.++...|..-+-.-+ +|+|....
T Consensus 224 v~~~-----~~~~~~~g~~~a~~li~~GiLs~~eali~Ll-iG~ils~---~--~~~lk~slP~~vsifG~k~Glk~~~v 292 (311)
T COG3366 224 VVLT-----NLANIIAGIVLAAGLLDSGILSEKEALIALL-LGGILSL---P--IIYLKHSLPTYVSIFGRKLGLKIVAV 292 (311)
T ss_pred HHHH-----HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH-HHhHHHh---h--HHHHHhhcccceeeeccccchHHHHH
Confidence 4433 2456667888888999889899987766543 4333333 2 35566666766666544 88888776
Q ss_pred HHHHHH
Q psy10535 577 GCVVCL 582 (591)
Q Consensus 577 g~la~~ 582 (591)
-+..+.
T Consensus 293 n~~v~i 298 (311)
T COG3366 293 NTAVSI 298 (311)
T ss_pred HHHHHH
Confidence 555543
No 30
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=35.27 E-value=5.7e+02 Score=28.74 Aligned_cols=55 Identities=20% Similarity=0.509 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHhccCCC--------CcchHHHHHHHHHHHHHH
Q psy10535 66 SIAFVIFILIDAWDQKRRLISLLGFGVFILLGYVFSKYPN--------RVPWKIVIWGVIMQLAIG 123 (591)
Q Consensus 66 ~~~~~~f~~~d~~~~~~~l~sl~Gl~v~l~ia~l~S~nrk--------~I~Wr~V~~gl~lQ~ila 123 (591)
..-+++|...|.-+-+--++++.|-..++.... ++|| +++|.++.-=+.+-.+.+
T Consensus 232 ~~vli~f~~~~~~~i~~~~val~~a~ill~~~~---~~~~~~~~~il~~v~W~~l~Ff~Glfi~V~ 294 (424)
T COG1055 232 ALVLIAFLLLPFLGIPVSLVALVGAAILLLLAR---LSPRESVNKILRGVEWSTLLFFIGLFIVVG 294 (424)
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHHHHHHHHhc---cCcchhHHHhhhcCChHHHHHHHHHHHHHH
Confidence 344447777775555667778888777777665 3443 468888766555544444
No 31
>cd00290 cytochrome_b_C Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Probab=34.84 E-value=2.7e+02 Score=26.38 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=31.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhchhhhHHHhhhcccccccccchhhhHHHHHHHHH
Q psy10535 6 WCNGLGILLIAAVFIYWFVFYYTVIKPFLFPILLRYSIDTTTKAFKNFIMTVRISVQIIL 65 (591)
Q Consensus 6 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 65 (591)
+||.+++..++.++.++.+++-..+-+ |..+.. -+|...+.+..|||.-...++.+
T Consensus 20 ~KDl~~~~~~l~~l~~~~~~~p~~l~d---p~n~~~-anP~~TP~~i~PeWYfl~~y~iL 75 (147)
T cd00290 20 PKDLLGAFPILIIFMILVFYAPNLLGH---PDNGIP-ANPLATPLHILPEWYFLPVYAIL 75 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccCc-CCcccchhhhhhhhHHHHHHHHH
Confidence 578888888888777654444433311 222221 24444455556888766666654
No 32
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]
Probab=28.84 E-value=4.1e+02 Score=29.82 Aligned_cols=71 Identities=14% Similarity=0.286 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhchhh-HHHHHHHHHHHHHHHHHHHhc-cCCCCcchHHHHHHHHHHHHHHHHHhhcchhHHHH
Q psy10535 65 LSIAFVIFILIDAWDQ-KRRLISLLGFGVFILLGYVFS-KYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVL 136 (591)
Q Consensus 65 ~~~~~~~f~~~d~~~~-~~~l~sl~Gl~v~l~ia~l~S-~nrk~I~Wr~V~~gl~lQ~ilal~vL~t~~G~~if 136 (591)
..+....|...|.... ..-..++.++++......+.- +..|+++|.++++-..+ +.++-.+-+|..-..+-
T Consensus 269 ~~l~~~~w~~~~~~~~~~~~~~ali~~~~~~~~~vl~~~~~~~~i~W~~lilf~g~-i~l~~~l~~tG~~~~i~ 341 (461)
T COG0471 269 FLLLLLLWIFGKLLGKIDATLIALIPVALLLLAGVLTWKEVYKKIDWGTLILFGGL-IALGSALSKTGAIAWIA 341 (461)
T ss_pred HHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHhHHHHHHhCCchHHHHHHHH-HHHHHHHHhcCHHHHHH
Confidence 3344445644444442 456788899999888887777 67899999987654443 34555556665543333
No 33
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=28.56 E-value=1.3e+02 Score=33.46 Aligned_cols=29 Identities=10% Similarity=-0.006 Sum_probs=15.6
Q ss_pred hchhhHHHHHHH-HHHHHHHHHHHHhccCC
Q psy10535 76 DAWDQKRRLISL-LGFGVFILLGYVFSKYP 104 (591)
Q Consensus 76 d~~~~~~~l~sl-~Gl~v~l~ia~l~S~nr 104 (591)
++.++|+...-+ .|..++..+.|...++|
T Consensus 428 ~~~~~~ny~~~~~~~~~~~~~~~~~~~~~~ 457 (474)
T TIGR03813 428 GTGSPTRYVGLLIGLAALFVTAPFLIYARR 457 (474)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666654444 45555555666664433
No 34
>KOG1619|consensus
Probab=27.42 E-value=3.8e+02 Score=27.99 Aligned_cols=93 Identities=22% Similarity=0.337 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhccCC----------CCcchHHH--HHHHHHHHHHHHHHhhcchhHHHHHHhHHHHHHHHHhhhcCc
Q psy10535 87 LLGFGVFILLGYVFSKYP----------NRVPWKIV--IWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFLEFAYQGA 154 (591)
Q Consensus 87 l~Gl~v~l~ia~l~S~nr----------k~I~Wr~V--~~gl~lQ~ilal~vL~t~~G~~if~~is~~~~~lL~~a~~G~ 154 (591)
++|.++..+..+-..++| +..||+++ +.|++.-..-|+++-|+ ++.-++.+.|++.
T Consensus 25 l~G~i~v~lvl~W~~~yr~Glaw~~~~~~~fnlHP~lMviGfI~l~GeAiL~YR~------~r~~~k~~~KliH------ 92 (245)
T KOG1619|consen 25 LLGFITVVLVLYWVNTYRGGLAWSSSPNKEFNLHPVLMVIGFIYLQGEAILIYRV------FRYTSKKVSKLIH------ 92 (245)
T ss_pred HHHHHHHHHHHHHHHHcCCccCCCCCcchhcCcchHHHHHHHHHhccceeeeeeh------hhhhhHHHHHHHH------
Confidence 455555555544443333 57789986 44555555566666554 4444555555552
Q ss_pred eeeecccccchhhhHHH--HHHHHHhhhhhe-----ecchhhHHHHHHHHHHHHHH
Q psy10535 155 AFVYGDEIVTVRISVQI--ILSIAFVIFILI-----DAWDQKRRLISLLGFGVFIL 203 (591)
Q Consensus 155 ~FvFG~l~~~~~fFf~~--Ll~Ivfi~fli~-----~~~~~~~rL~sl~Gi~v~l~ 203 (591)
-+++. +...++..+-++ ....+++.|.|-.|+.++++
T Consensus 93 ------------~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl~~v~l 136 (245)
T KOG1619|consen 93 ------------LGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGLCVVIL 136 (245)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHHHHHHHHH
Confidence 22222 222222223332 33456888999999998887
No 35
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=26.84 E-value=1.2e+02 Score=32.77 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhchhhHHH-HHHHHHHHHHHHHHHHhccCCCCc-----chHHHHHHHHHHHHH
Q psy10535 54 IMTVRISVQIILSIAFVIFILIDAWDQKRR-LISLLGFGVFILLGYVFSKYPNRV-----PWKIVIWGVIMQLAI 122 (591)
Q Consensus 54 ~~~~r~~~~~~~~~~~~~f~~~d~~~~~~~-l~sl~Gl~v~l~ia~l~S~nrk~I-----~Wr~V~~gl~lQ~il 122 (591)
+.+.+.-..+.++.+.+.+...|+...... ..-.+|++++..- .+-+|+++ +||.++.|+..||++
T Consensus 9 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~lImf~mG---l~Ls~~d~~~~~~~p~~vligl~~qfvl 80 (319)
T COG0385 9 RDPFKIFLLWVVLLAAIAPIFPETFGWLGSAIPIALALIMFGMG---LTLSREDFLAGLKHPRLVLIGLAAQFVL 80 (319)
T ss_pred HhHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhcC---CCCCHHHHHHhhcchHHHHHHHHHHHHH
Confidence 445566677778888888888888887543 2334444444333 33333333 899999999999976
No 36
>PLN03223 Polycystin cation channel protein; Provisional
Probab=25.82 E-value=1.6e+03 Score=29.42 Aligned_cols=58 Identities=9% Similarity=-0.039 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhHHHhhhc--ccccccccchhhhHHHHHHHHHHHHHHHH
Q psy10535 13 LLIAAVFIYWFVFYYTVIKPFLFPILLRYSI--DTTTKAFKNFIMTVRISVQIILSIAFVIF 72 (591)
Q Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~r~~~~~~~~~~~~~f 72 (591)
+.+++=++|+.++.|.+.+.... +.+..+ ..-.+-++..+.++-+...++.+.+++.|
T Consensus 1174 fvLacEIIFVLFILYfIyrEIkE--I~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLY 1233 (1634)
T PLN03223 1174 VRFAMEILLAIGAVYSVYEEAMD--FGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMW 1233 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544322 111100 00011235667777666666655555544
No 37
>TIGR03097 PEP_O_lig_1 probable O-glycosylation ligase, exosortase system type 1-associated. These proteins are members of the O-antigen polymerase (wzy) family described by Pfam model pfam04932. This group is associated with genomes and ususally genomic contexts containing elements of the exosortase/PEP-CTERM protein export system, specificially the type 1 variety of this system described by the Genome Property, GenProp0652.
Probab=25.22 E-value=9.2e+02 Score=26.33 Aligned_cols=82 Identities=9% Similarity=0.171 Sum_probs=41.6
Q ss_pred HHHHhhchhhhHHHhhhccccccccc-chhhhHHHHHHHHHHHHHH-HHHhhhchhh---HHHHHHHHHHHHHHHHHHHh
Q psy10535 26 YYTVIKPFLFPILLRYSIDTTTKAFK-NFIMTVRISVQIILSIAFV-IFILIDAWDQ---KRRLISLLGFGVFILLGYVF 100 (591)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~-~f~~~d~~~~---~~~l~sl~Gl~v~l~ia~l~ 100 (591)
-+-+.+|++|-.+|-..+ .-||.+ .+|.-...+....+.++.+ .+...+.+++ .....-++..+....+..++
T Consensus 14 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~l~~l~~~~~k~~~~~~~~~~~lllf~~~~~ls~l~ 91 (402)
T TIGR03097 14 PMAFRRPWVGVLVWTWLS--IMNPHRLTWGFAYDAPFAALVAGVTLAGLLFSKERKSIPWTPEVIFLLLLTIWMTVTTFF 91 (402)
T ss_pred HHHHhhhHHHHHHHHHHH--hccHHHHHHHHHccChHHHHHHHHHHHHHHhccccCCCCCChHHHHHHHHHHHHHHHHHh
Confidence 477889999988888874 333333 1222111222222222222 2233333332 22334455666677777778
Q ss_pred ccCCCCcchH
Q psy10535 101 SKYPNRVPWK 110 (591)
Q Consensus 101 S~nrk~I~Wr 110 (591)
|.||. ..|+
T Consensus 92 s~~~~-~s~~ 100 (402)
T TIGR03097 92 AFDPD-VAFV 100 (402)
T ss_pred cCCCh-HHHH
Confidence 87764 4444
No 38
>cd01116 P_permease Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains.
Probab=24.85 E-value=6e+02 Score=27.45 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhccC--CCCcchHHHHHHHHHHHHHHHHHhhcchhHH
Q psy10535 84 LISLLGFGVFILLGYVFSKY--PNRVPWKIVIWGVIMQLAIGLVTIRLSLGRY 134 (591)
Q Consensus 84 l~sl~Gl~v~l~ia~l~S~n--rk~I~Wr~V~~gl~lQ~ilal~vL~t~~G~~ 134 (591)
...+.|.+++.......+.+ .++++|++++.-... +.++-.+-++...+.
T Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~i~w~~l~~~~g~-~~l~~~l~~tG~~~~ 294 (413)
T cd01116 243 WIALLGALLLLLLADKLDFEDVLSRVEWDTLLFFAGL-FVLVGGLEELGIIEW 294 (413)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHhCCCcHHHHHHHH-HHHHHHHHHcCHHHH
Confidence 35555655555444322211 256899886544333 334444455554433
No 39
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=24.63 E-value=7.8e+02 Score=29.78 Aligned_cols=116 Identities=12% Similarity=0.188 Sum_probs=71.6
Q ss_pred CCHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHhhhHhHHHHHhCCCchhHHHHHH
Q psy10535 422 LNVIDAACKGAQIGTEMVLGIIANIIAFVSFVAFCNAMLIWFGSLVGVEDLTIEFIFGKIFIPLTWIMGVEPSQCEEVAR 501 (591)
Q Consensus 422 ~n~~~A~~~Ga~~g~~la~~I~a~lIafvalial~n~~l~~~g~~~g~~~ltl~~ilgyif~P~a~lmGvp~~d~~~vg~ 501 (591)
+...+|+. ..|-.+..+..+.-++|+||..----...|+|-+.- -++-+-.+.+++|-|- .+.-.||.+= .
T Consensus 286 eAv~~ai~---~~g~avl~a~lTT~~GF~Sl~~s~i~~i~~~Gi~~s-iGi~la~l~sl~~lp~-ll~~~~~~~~----~ 356 (727)
T COG1033 286 EAVVEAIK---HTGPAVLIAALTTAAGFLSLLTSSIPAIKEFGILLS-IGIILAFLSSLTVLPA-LLILIPKGRK----K 356 (727)
T ss_pred HHHHHHHH---hhccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHhchHhhh----h
Confidence 34444444 455566667777778888877765555666552211 1245778889999998 8888897643 3
Q ss_pred HHhhH--hhhhhhhhhhhhhhhhhcCCCCchhhHHHHHHHhcccChhhhH
Q psy10535 502 LIGLK--TVINEFVAYKELGRVKKLGLLSPRSEAIATYSLCGFANPGSVG 549 (591)
Q Consensus 502 l~g~K--~v~NEFvAy~~l~~~~~~~~ls~rs~~I~t~aLcgFaN~~SiG 549 (591)
..+.| .-=-.+-+....+.. ..-.|++.+++...+||++=+|+=.
T Consensus 357 ~~~~k~~~~~~~~~~l~~i~~~---~~~~~~~~L~vali~~~~~~yg~~~ 403 (727)
T COG1033 357 REEKKDSKKGKLEKRLSKIAKI---IARHPVTVLVVALIIVGVSLYGASK 403 (727)
T ss_pred hhhcccccchhHHHHHHHHHHH---hHhhhHHHHHHHHHHHHHHHhhhhh
Confidence 34444 111112222333332 2247899999999999998887633
No 40
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=23.79 E-value=6.5e+02 Score=30.14 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=22.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhchh
Q psy10535 7 CNGLGILLIAAVFIYWFVFYYTVIKPFL 34 (591)
Q Consensus 7 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 34 (591)
.-|+.+..+.+.+.|..++.++-+|+..
T Consensus 348 ~yg~~fA~~~a~i~h~~l~~~~~i~~~~ 375 (681)
T TIGR00727 348 SYGLSFASIPLMITHSIIVHGKLLFNAL 375 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3477888999999998888888776654
No 41
>PRK10794 cell wall shape-determining protein; Provisional
Probab=23.06 E-value=5.6e+02 Score=28.01 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhccCCCCcchHH
Q psy10535 90 FGVFILLGYVFSKYPNRVPWKI 111 (591)
Q Consensus 90 l~v~l~ia~l~S~nrk~I~Wr~ 111 (591)
+..++.++..++++|++-++|.
T Consensus 118 i~lil~la~~l~~~~~~~~~~~ 139 (370)
T PRK10794 118 IAVPLMVARFINRDVCPPSLKN 139 (370)
T ss_pred HHHHHHHHHHHHhccccccHHH
Confidence 4555566666666554444443
No 42
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=22.47 E-value=2.8e+02 Score=30.70 Aligned_cols=52 Identities=27% Similarity=0.399 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q psy10535 84 LISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLE 137 (591)
Q Consensus 84 l~sl~Gl~v~l~ia~l~S~nrk~I~Wr~V~~gl~lQ~ilal~vL~t~~G~~if~ 137 (591)
+..+..-+..+...|.++++ |-++|-.. ..+.+-.++.+.--||.+||.++.
T Consensus 220 ~k~~~~~~~il~~v~~ln~y-rGvp~~vl-v~~vl~~~~~fvt~rT~fGR~VyA 271 (394)
T COG4214 220 LKLLVIAAIILGLVYVLNSY-RGVPNPVL-VLLVLLIVFTFVTTRTVFGRRVYA 271 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhc-cCCcHHHH-HHHHHHHHHHHHhhhceeeeEEEE
Confidence 45556666777778888777 56777543 333444566667789999999885
No 43
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump.
Probab=22.13 E-value=8.9e+02 Score=25.77 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=19.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHh
Q psy10535 105 NRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECI 139 (591)
Q Consensus 105 k~I~Wr~V~~gl~lQ~ilal~vL~t~~G~~if~~i 139 (591)
|+++|++++.- .-.+.++..+-++...+.+-+++
T Consensus 255 ~~i~w~~~~~~-~~~~~l~~~l~~~G~~~~~a~~~ 288 (396)
T cd00625 255 KSVDWGTLLFF-AGLFVLVGALESTGLLEWLAELL 288 (396)
T ss_pred HhCCCcHHHHH-HHHHHHHHHHHHcCHHHHHHHHH
Confidence 56899874433 33455556666776655555444
No 44
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=21.68 E-value=5.2e+02 Score=26.83 Aligned_cols=77 Identities=14% Similarity=0.080 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCcch-HH--HHHHHHHHHHHHHHHhhcchhHHHHHHhHHHHHHHHHhhhcCce
Q psy10535 79 DQKRRLISLLGFGVFILLGYVFSKYPNRVPW-KI--VIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFLEFAYQGAA 155 (591)
Q Consensus 79 ~~~~~l~sl~Gl~v~l~ia~l~S~nrk~I~W-r~--V~~gl~lQ~ilal~vL~t~~G~~if~~is~~~~~lL~~a~~G~~ 155 (591)
++....+|+.++++.+.-...-+. ..-.| ++ +..|=+....+++++.+...-+..=+.+++.+..+-+|.+.-++
T Consensus 44 G~r~~~i~~~~Ll~~v~t~~~~~~--~~~~~~~~~l~~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~ka~ 121 (284)
T PF12805_consen 44 GPRAATIGFATLLVAVYTMAGPSP--GPEALEHALLFLAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRAKAR 121 (284)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666666655443322222 22233 22 66677788999999999888899999999999999999999888
Q ss_pred ee
Q psy10535 156 FV 157 (591)
Q Consensus 156 Fv 157 (591)
|.
T Consensus 122 ~~ 123 (284)
T PF12805_consen 122 FF 123 (284)
T ss_pred cC
Confidence 85
No 45
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=20.95 E-value=3.1e+02 Score=24.07 Aligned_cols=12 Identities=33% Similarity=0.553 Sum_probs=10.0
Q ss_pred HHHHhhhhhhhH
Q psy10535 354 TAVMLGGFSTVA 365 (591)
Q Consensus 354 ~~vm~~G~atia 365 (591)
..+|..||.+|=
T Consensus 12 ~~lm~~GM~~VF 23 (85)
T PRK03814 12 ATLMLTGMGVVF 23 (85)
T ss_pred HHHHHHHHHHHH
Confidence 679999998875
No 46
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=20.87 E-value=1.4e+02 Score=27.53 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCC-cchHHHH
Q psy10535 79 DQKRRLISLLGFGVFILLGYVFSKYPNR-VPWKIVI 113 (591)
Q Consensus 79 ~~~~~l~sl~Gl~v~l~ia~l~S~nrk~-I~Wr~V~ 113 (591)
+....+.++.|+++.+.+.+.+++++++ .++++++
T Consensus 96 e~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~p~I 131 (135)
T PF04246_consen 96 ELWAILGGLLGLALGFLILRLFDRRLKKKSKFQPVI 131 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCceEE
Confidence 5567889999999999999999876655 4566643
No 47
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=20.57 E-value=8.4e+02 Score=24.19 Aligned_cols=32 Identities=22% Similarity=0.114 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcchHHHH
Q psy10535 81 KRRLISLLGFGVFILLGYVFSKYPNRVPWKIVI 113 (591)
Q Consensus 81 ~~~l~sl~Gl~v~l~ia~l~S~nrk~I~Wr~V~ 113 (591)
...+++ ++++++.+.+-+..+|++=|+||+.+
T Consensus 49 ~m~~is-~~lv~vFGglTl~~~d~~FIk~KpTI 80 (178)
T TIGR00997 49 KMQWIS-FVLIVVFGGLTLIFHDSRFIKWKPTI 80 (178)
T ss_pred HHHHHH-HHHHHHHHHHHHHhCChhhhhhHHHH
Confidence 344444 56667777778889999999999843
No 48
>MTH00046 CYTB cytochrome b; Validated
Probab=20.16 E-value=4.1e+02 Score=29.25 Aligned_cols=78 Identities=12% Similarity=0.169 Sum_probs=42.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhchhhhHHHhhh-cccccccccchhhhHHHHHHHHHHHHHHHHHhhhchhhHHHH
Q psy10535 6 WCNGLGILLIAAVFIYWFVFYYTVIKPFLFPILLRYS-IDTTTKAFKNFIMTVRISVQIILSIAFVIFILIDAWDQKRRL 84 (591)
Q Consensus 6 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~f~~~d~~~~~~~l 84 (591)
+||.+++.+++.++.++. ...|..-.-..++. -+|..-|..-.|||.-+..++.+ +.-++.+
T Consensus 218 ~KDl~~~~~~l~~~~~~~-----~~~P~~l~dp~Nf~pAnPl~TP~hI~PEWYFL~~YaiL------------RsiPnKl 280 (355)
T MTH00046 218 VKDLFLFMVVCSLLVFWL-----FVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAML------------RSINSKI 280 (355)
T ss_pred HHHHHHHHHHHHHHHHHH-----HcCCCccCCHHHcCcCCcCCCCCCCCchHHHHHHHHHH------------HHhhhhh
Confidence 467777777776665422 23343211111221 24555566666999988888776 2225566
Q ss_pred HHHHHHHHHHHHHHHh
Q psy10535 85 ISLLGFGVFILLGYVF 100 (591)
Q Consensus 85 ~sl~Gl~v~l~ia~l~ 100 (591)
-+++.++.++.+.++-
T Consensus 281 gGvl~~~siliL~~lp 296 (355)
T MTH00046 281 GGLVLVLSFLFFLWVP 296 (355)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 6776666333434443
No 49
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=20.01 E-value=2e+02 Score=26.73 Aligned_cols=29 Identities=34% Similarity=0.411 Sum_probs=19.0
Q ss_pred cccCChhhHHHHHhhhhhhhHHHHHHHHHhc
Q psy10535 345 LPDLTRSELTAVMLGGFSTVAGTVFAAYTSL 375 (591)
Q Consensus 345 l~~mt~sel~~vm~~G~atiagsvl~aY~~~ 375 (591)
...||.+|+. ++.+.++++|-+++.-..+
T Consensus 18 ~rGlT~~El~--~~a~~~~~~g~~~gl~la~ 46 (121)
T PF11990_consen 18 FRGLTADELG--LAAGVGFVAGLVVGLPLAL 46 (121)
T ss_pred ecCCCHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3569999994 4555566777666655543
Done!