Query psy10535
Match_columns 591
No_of_seqs 283 out of 1333
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 20:47:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tij_A NUPC family protein; me 100.0 4E-138 1E-142 1100.9 37.2 404 187-591 5-421 (424)
2 3tij_A NUPC family protein; me 100.0 4.4E-33 1.5E-37 296.2 10.8 291 79-375 5-388 (424)
3 4f35_D Transporter, NADC famil 33.7 1.1E+02 0.0037 32.2 8.5 11 105-115 303-313 (449)
4 3o7q_A L-fucose-proton symport 17.7 7E+02 0.024 24.4 16.0 52 532-583 349-400 (438)
5 1q90_R Cytochrome B6-F complex 13.4 1.1E+02 0.0036 23.2 2.3 36 345-380 6-42 (49)
6 3zux_A Transporter, ASBTNM; tr 9.5 4.5E+02 0.015 26.6 6.4 58 62-122 22-85 (332)
7 4djk_A Probable glutamate/gamm 9.5 5.1E+02 0.018 26.8 7.0 18 86-103 449-466 (511)
8 1pw4_A Glycerol-3-phosphate tr 8.9 1.3E+03 0.043 22.5 16.2 48 358-407 163-213 (451)
9 1g1s_C PSGL-1 peptide, PSGL-1; 7.2 1.5E+02 0.0053 19.5 1.0 10 400-409 12-21 (28)
10 3rlf_F Maltose transport syste 7.0 7.2E+02 0.025 26.8 7.0 60 67-127 24-83 (514)
No 1
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter, drug transport uridine, nucleosides, membrane protein; HET: URI DMU; 2.44A {Vibrio cholerae}
Probab=100.00 E-value=3.5e-138 Score=1100.87 Aligned_cols=404 Identities=34% Similarity=0.598 Sum_probs=382.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHhhhhheeecchhHHHHHHhhHHHHHHHhhhcCCceeec
Q psy10535 187 DQKRRLISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFLEFAYQGAAFVY 266 (591)
Q Consensus 187 ~~~~rL~sl~Gi~v~l~ia~llS~~rk~I~wr~Vi~gL~lQ~~lalivl~~~~G~~~~~~i~~~v~~ll~~~~~G~~Fvf 266 (591)
..|++++|++|++++++++|++|+|||+||||+|++|+.+|+++|++++|||.||++++|++++++++++|+++|++|+|
T Consensus 5 ~~M~~l~sl~Gi~v~l~ia~l~S~nrk~I~wr~V~~gl~lQ~~la~~vL~~~~G~~~~~~i~~~v~~ll~~a~~G~~FvF 84 (424)
T 3tij_A 5 PRMSLFMSLIGMAVLLGIAVLLSSNRKAINLRTVGGAFAIQFSLGAFILYVPWGQELLRGFSDAVSNVINYGNDGTSFLF 84 (424)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHCSCGGGCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhChhhcC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccccc---------cceehhhHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCcchhhhhhhhhccccccc
Q psy10535 267 GDEIVFV---------YHVFAFKVLSVIFFMSFIIQICFYYGWLQSIFLKLGWLLQVSLGTTVAESVNTCASVFLGMTEA 337 (591)
Q Consensus 267 G~~~~~~---------~~~Faf~VLp~IIffsaLisiLyy~Gimq~ii~~i~~~l~~~mG~s~~Es~~AaaniFlGqtEa 337 (591)
|+ ..++ +++|||+|||+|||||+++++|||+|+|||+++++||.+||+||+|++||++|++|+|+||||+
T Consensus 85 G~-l~~~~~~~~f~~~~~~Faf~vLp~IiFfsalisiLyy~Gimq~iI~~ig~~l~k~lg~s~~ES~~AaaniFlGqtEa 163 (424)
T 3tij_A 85 GG-LVSGKMFEVFGGGGFIFAFRVLPTLIFFSALISVLYYLGVMQWVIRILGGGLQKALGTSRAESMSAAANIFVGQTEA 163 (424)
T ss_dssp GG-GGSTHHHHHHGGGGCCHHHHTHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTTSCTTTG
T ss_pred Cc-ccCcccccccccccceeHHHHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHhcCCCc
Confidence 97 4432 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccccccCChhhHHHHHhhhhhhhHHHHHHHHHhcCCCcchHHHHhhhhhhHHHHHHhhcCCccccccccccc-ccc
Q psy10535 338 PLLIKPYLPDLTRSELTAVMLGGFSTVAGTVFAAYTSLGVQAAHIITASIMTAPSALSYSKILYPETEISKTTISN-IKK 416 (591)
Q Consensus 338 pllikpyl~~mt~sel~~vm~~G~atiagsvl~aY~~~g~~~~~lltAsvmsapaal~iaki~~Pet~~~~~~~~~-~~~ 416 (591)
|++||||+++|||||+|++||+||||||||+|++|++||+|++||+|||+||+|+++++||++|||||+|+++.++ .+.
T Consensus 164 pllikpyl~~mT~sEl~~vm~~GmatVaGsvl~aY~~~Gv~~~~LlaAsvMsaPa~l~iaKi~~Pete~~~~~~~~~~~~ 243 (424)
T 3tij_A 164 PLVVRPFVPKMTQSELFAVMCGGLASIAGGVLAGYASMGVKIEYLVAASFMAAPGGLLFAKLMMPETEKPQDNEDITLDG 243 (424)
T ss_dssp GGGGGGGSTTCCHHHHHHHHHHHHHCCCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCC--------
T ss_pred ceeehHhhhhCCHHHHHHHHHcchhHHHHHHHHHHHHcCCCHHHHHHHHHHHhhHHHHHHHhcCCCCCCccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765432 344
Q ss_pred cCCCCCCHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHhhhHhHHHHHhCCCchhH
Q psy10535 417 WKSDDLNVIDAACKGAQIGTEMVLGIIANIIAFVSFVAFCNAMLIWFGSLVGVEDLTIEFIFGKIFIPLTWIMGVEPSQC 496 (591)
Q Consensus 417 ~~~~~~n~~~A~~~Ga~~g~~la~~I~a~lIafvalial~n~~l~~~g~~~g~~~ltl~~ilgyif~P~a~lmGvp~~d~ 496 (591)
++++++|++||+++||+||+|+++||+||||+|+||+|++|++++|+|+++|+|++|||.|+||+|+|+||+|||||+||
T Consensus 244 ~~~~~~n~l~A~~~Ga~~G~kla~~I~AmLIaFvALiAliN~~l~~ig~~~g~~~lSlq~IlGyif~P~A~lmGVpw~d~ 323 (424)
T 3tij_A 244 GDDKPANVIDAAAGGASAGLQLALNVGAMLIAFIGLIALINGMLGGIGGWFGMPELKLEMLLGWLFAPLAFLIGVPWNEA 323 (424)
T ss_dssp ---CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCTTCCHHHHHHHHHHHHHHHTTCCGGGH
T ss_pred cccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccHHHHHHHHhHHHHHHhCCCHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHhhhhhhhhhhhhhhhhhc---CCCCchhhHHHHHHHhcccChhhhHHHHhhhcccCCCcccchHHHHHHH
Q psy10535 497 EEVARLIGLKTVINEFVAYKELGRVKKL---GLLSPRSEAIATYSLCGFANPGSVGCLIATLNTLVPSQRRNTIDLAFRA 573 (591)
Q Consensus 497 ~~vg~l~g~K~v~NEFvAy~~l~~~~~~---~~ls~rs~~I~t~aLcgFaN~~SiGi~ig~~~~lap~r~~~ia~~~~ra 573 (591)
.++||+||||+++||||||+||++++++ +++||||++|+||||||||||||||||+|++++|+||||+|+||+++||
T Consensus 324 ~~vg~liG~Klv~NEFVAy~~L~~~~~~~~~~~ls~rs~~I~T~aLcGFAN~sSiGI~iGgl~~laP~r~~~ia~~g~ra 403 (424)
T 3tij_A 324 TVAGEFIGLKTVANEFVAYSQFAPYLTEAAPVVLSEKTKAIISFALCGFANLSSIAILLGGLGSLAPKRRGDIARMGVKA 403 (424)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHGGGGSTTCSSCCCHHHHHHHHHHTCSCCSTHHHHHHHHHTGGGCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCHHHHHHHHHHHHHcccHHHHHHHHHhhhccCCchhhHHHHHHHHH
Confidence 9999999999999999999999999764 3699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcC
Q psy10535 574 FIGGCVVCLLTACIVDNI 591 (591)
Q Consensus 574 l~~g~la~~~tA~iaG~l 591 (591)
+++|+++|+|||||||++
T Consensus 404 l~aGtlaslmSA~IAGl~ 421 (424)
T 3tij_A 404 VIAGTLSNLMAATIAGFF 421 (424)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999973
No 2
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter, drug transport uridine, nucleosides, membrane protein; HET: URI DMU; 2.44A {Vibrio cholerae}
Probab=99.98 E-value=4.4e-33 Score=296.22 Aligned_cols=291 Identities=16% Similarity=0.237 Sum_probs=225.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHhHHHHHHHHHhhhcCceeee
Q psy10535 79 DQKRRLISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFLEFAYQGAAFVY 158 (591)
Q Consensus 79 ~~~~~l~sl~Gl~v~l~ia~l~S~nrk~I~Wr~V~~gl~lQ~ilal~vL~t~~G~~if~~is~~~~~lL~~a~~G~~FvF 158 (591)
.+|++++|++|++++++++|++|+|||+||||+|++|+.+|+++|++++|||.|+++++|+++.++++++|+++|++|+|
T Consensus 5 ~~M~~l~sl~Gi~v~l~ia~l~S~nrk~I~wr~V~~gl~lQ~~la~~vL~~~~G~~~~~~i~~~v~~ll~~a~~G~~FvF 84 (424)
T 3tij_A 5 PRMSLFMSLIGMAVLLGIAVLLSSNRKAINLRTVGGAFAIQFSLGAFILYVPWGQELLRGFSDAVSNVINYGNDGTSFLF 84 (424)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHCSCGGGCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhChhhcC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccch----------hhhHHHHHHHHHhh-------------hhh------eecchhhHHHHHHHHHHHHHH------
Q psy10535 159 GDEIVTV----------RISVQIILSIAFVI-------------FIL------IDAWDQKRRLISLLGFGVFIL------ 203 (591)
Q Consensus 159 G~l~~~~----------~fFf~~Ll~Ivfi~-------------fli------~~~~~~~~rL~sl~Gi~v~l~------ 203 (591)
|++.+++ .|+++++++|+|++ |++ .+|..++++.||+.+...+++
T Consensus 85 G~l~~~~~~~~f~~~~~~Faf~vLp~IiFfsalisiLyy~Gimq~iI~~ig~~l~k~lg~s~~ES~~AaaniFlGqtEap 164 (424)
T 3tij_A 85 GGLVSGKMFEVFGGGGFIFAFRVLPTLIFFSALISVLYYLGVMQWVIRILGGGLQKALGTSRAESMSAAANIFVGQTEAP 164 (424)
T ss_dssp GGGGSTHHHHHHGGGGCCHHHHTHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTTSCTTTGG
T ss_pred CcccCcccccccccccceeHHHHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHhcCCCcc
Confidence 9987632 36689999999973 332 477788888999888877655
Q ss_pred ------------------HHH--------HhcCCCCC-cchHHHHHHHHHHHhhhhheeecchhHHHHHHhhHHHHHHHh
Q psy10535 204 ------------------LGY--------VFSKYPNR-VPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFLE 256 (591)
Q Consensus 204 ------------------ia~--------llS~~rk~-I~wr~Vi~gL~lQ~~lalivl~~~~G~~~~~~i~~~v~~ll~ 256 (591)
.+- .+..|.+. +|.++++.+..++..-++.+.|.-+|++.-. ..+......+
T Consensus 165 llikpyl~~mT~sEl~~vm~~GmatVaGsvl~aY~~~Gv~~~~LlaAsvMsaPa~l~iaKi~~Pete~~-~~~~~~~~~~ 243 (424)
T 3tij_A 165 LVVRPFVPKMTQSELFAVMCGGLASIAGGVLAGYASMGVKIEYLVAASFMAAPGGLLFAKLMMPETEKP-QDNEDITLDG 243 (424)
T ss_dssp GGGGGGSTTCCHHHHHHHHHHHHHCCCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCC-CC--------
T ss_pred eeehHhhhhCCHHHHHHHHHcchhHHHHHHHHHHHHcCCCHHHHHHHHHHHhhHHHHHHHhcCCCCCCc-cccccccccc
Confidence 000 11124455 8999999999999999999999999886311 1111100111
Q ss_pred hhcCCcee--ecCcccccccceehhhHhHHHHHHHHHHHHHHHh----h-------h-HHHHHHHHHHHHHHHhCCCcch
Q psy10535 257 FAYQGAAF--VYGDEIVFVYHVFAFKVLSVIFFMSFIIQICFYY----G-------W-LQSIFLKLGWLLQVSLGTTVAE 322 (591)
Q Consensus 257 ~~~~G~~F--vfG~~~~~~~~~Faf~VLp~IIffsaLisiLyy~----G-------i-mq~ii~~i~~~l~~~mG~s~~E 322 (591)
..++..++ ..+++.. +|...+.+|.+++|.|.|+++++|.. | + +|.|.+|+++|++|+||+|+.|
T Consensus 244 ~~~~~~n~l~A~~~Ga~-~G~kla~~I~AmLIaFvALiAliN~~l~~ig~~~g~~~lSlq~IlGyif~P~A~lmGVpw~d 322 (424)
T 3tij_A 244 GDDKPANVIDAAAGGAS-AGLQLALNVGAMLIAFIGLIALINGMLGGIGGWFGMPELKLEMLLGWLFAPLAFLIGVPWNE 322 (424)
T ss_dssp ---CCSSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCTTCCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred cccCCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccHHHHHHHHhHHHHHHhCCCHHH
Confidence 12233455 5555555 79999999999999999999999983 2 4 8999999999999999999999
Q ss_pred hhhh--------hhhhcccccccceeecccccc-----CC-hhhH-HHHHhhhhhhhH--HHHHHHHHhc
Q psy10535 323 SVNT--------CASVFLGMTEAPLLIKPYLPD-----LT-RSEL-TAVMLGGFSTVA--GTVFAAYTSL 375 (591)
Q Consensus 323 s~~A--------aaniFlGqtEapllikpyl~~-----mt-~sel-~~vm~~G~atia--gsvl~aY~~~ 375 (591)
+..+ +.|.|+.+.|= .++.++ ++ |||. -|..-||||-.| |=++++.-++
T Consensus 323 ~~~vg~liG~Klv~NEFVAy~~L----~~~~~~~~~~~ls~rs~~I~T~aLcGFAN~sSiGI~iGgl~~l 388 (424)
T 3tij_A 323 ATVAGEFIGLKTVANEFVAYSQF----APYLTEAAPVVLSEKTKAIISFALCGFANLSSIAILLGGLGSL 388 (424)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHH----GGGGSTTCSSCCCHHHHHHHHHHTCSCCSTHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHhhhccccccCHHHHHHHHHHHHHcccHHHHHHHHHhhhcc
Confidence 9998 78999998663 334432 33 4454 458889999875 4444555454
No 3
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=33.74 E-value=1.1e+02 Score=32.15 Aligned_cols=11 Identities=9% Similarity=0.453 Sum_probs=6.9
Q ss_pred CCcchHHHHHH
Q psy10535 105 NRVPWKIVIWG 115 (591)
Q Consensus 105 k~I~Wr~V~~g 115 (591)
|+++|.+++.-
T Consensus 303 ~~i~W~~l~~~ 313 (449)
T 4f35_D 303 KTADWGVLLLF 313 (449)
T ss_dssp HHSCHHHHHHH
T ss_pred cccCchHHHHh
Confidence 56788775443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=17.67 E-value=7e+02 Score=24.38 Aligned_cols=52 Identities=12% Similarity=0.131 Sum_probs=25.6
Q ss_pred hHHHHHHHhcccChhhhHHHHhhhcccCCCcccchHHHHHHHHHHHHHHHHH
Q psy10535 532 EAIATYSLCGFANPGSVGCLIATLNTLVPSQRRNTIDLAFRAFIGGCVVCLL 583 (591)
Q Consensus 532 ~~I~t~aLcgFaN~~SiGi~ig~~~~lap~r~~~ia~~~~ral~~g~la~~~ 583 (591)
..+..+.++|+.+-..............|++++.......-..+++.+....
T Consensus 349 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 400 (438)
T 3o7q_A 349 VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPV 400 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHH
Confidence 3444556677665555555555545556666444443333223344443333
No 5
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=13.44 E-value=1.1e+02 Score=23.22 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=26.6
Q ss_pred cccCChhhHHHHHhh-hhhhhHHHHHHHHHhcCCCcc
Q psy10535 345 LPDLTRSELTAVMLG-GFSTVAGTVFAAYTSLGVQAA 380 (591)
Q Consensus 345 l~~mt~sel~~vm~~-G~atiagsvl~aY~~~g~~~~ 380 (591)
.++|+|-+++...+. ..+.++++++.-|+.|=+||.
T Consensus 6 ~pdm~RRqfln~l~~G~~a~~a~~~~~P~v~ffvpP~ 42 (49)
T 1q90_R 6 VPDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPPS 42 (49)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhheeecCCc
Confidence 578999999887764 446677778888888766654
No 6
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=9.51 E-value=4.5e+02 Score=26.61 Aligned_cols=58 Identities=33% Similarity=0.410 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhhchhhHHHHHH-HHHHHHHHHHHHHhccCCCCc-----chHHHHHHHHHHHHH
Q psy10535 62 QIILSIAFVIFILIDAWDQKRRLIS-LLGFGVFILLGYVFSKYPNRV-----PWKIVIWGVIMQLAI 122 (591)
Q Consensus 62 ~~~~~~~~~~f~~~d~~~~~~~l~s-l~Gl~v~l~ia~l~S~nrk~I-----~Wr~V~~gl~lQ~il 122 (591)
.+.+...++.+..++..+..+..+. .++ ++.+..-++-+++++ +||.+.+++..|+++
T Consensus 22 l~i~~~~~lg~~~P~~~~~~~~~i~~~l~---~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi 85 (332)
T 3zux_A 22 LWAALFAAAAFFAPDTFKWAGPYIPWLLG---IIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAI 85 (332)
T ss_dssp HHHHHHHHHHHHCGGGTGGGGGGHHHHHH---HHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcchhhhhhHHHHHHHHH---HHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3334344456666665554332221 222 223333334344443 788999999999965
No 7
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=9.48 E-value=5.1e+02 Score=26.77 Aligned_cols=18 Identities=17% Similarity=0.349 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhccC
Q psy10535 86 SLLGFGVFILLGYVFSKY 103 (591)
Q Consensus 86 sl~Gl~v~l~ia~l~S~n 103 (591)
-+.|.+++..+.|...++
T Consensus 449 ~~~~~~~~~~i~~~~~~~ 466 (511)
T 4djk_A 449 LVVSFLVVLALPFILYAV 466 (511)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555566665443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=8.87 E-value=1.3e+03 Score=22.48 Aligned_cols=48 Identities=15% Similarity=0.028 Sum_probs=25.7
Q ss_pred hhhhhhhHHHHHHHHH--hcC-CCcchHHHHhhhhhhHHHHHHhhcCCccccc
Q psy10535 358 LGGFSTVAGTVFAAYT--SLG-VQAAHIITASIMTAPSALSYSKILYPETEIS 407 (591)
Q Consensus 358 ~~G~atiagsvl~aY~--~~g-~~~~~lltAsvmsapaal~iaki~~Pet~~~ 407 (591)
..+.+.+.|..++++. .+| -...+.+.+. .+...++ +.-...||++++
T Consensus 163 ~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~-~~~~~~~-~~~~~~~~~~~~ 213 (451)
T 1pw4_A 163 AHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF-CAILVAL-FAFAMMRDTPQS 213 (451)
T ss_dssp HHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHH-HHHHHHH-HHHHHCCCSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHHHH-HHHhhccCCHhh
Confidence 3455667777777764 355 5555655543 3333333 333456776543
No 9
>1g1s_C PSGL-1 peptide, PSGL-1; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens}
Probab=7.16 E-value=1.5e+02 Score=19.50 Aligned_cols=10 Identities=40% Similarity=0.664 Sum_probs=7.5
Q ss_pred cCCccccccc
Q psy10535 400 LYPETEISKT 409 (591)
Q Consensus 400 ~~Pet~~~~~ 409 (591)
+.||||+|+.
T Consensus 12 flpetepp~~ 21 (28)
T 1g1s_C 12 FLPETEPPRP 21 (28)
T ss_pred ccccCCCCcc
Confidence 4699998763
No 10
>3rlf_F Maltose transport system permease protein MALF; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F* 3pv0_F* 3puw_F* 3fh6_F
Probab=7.05 E-value=7.2e+02 Score=26.82 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=39.4
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHh
Q psy10535 67 IAFVIFILIDAWDQKRRLISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTI 127 (591)
Q Consensus 67 ~~~~~f~~~d~~~~~~~l~sl~Gl~v~l~ia~l~S~nrk~I~Wr~V~~gl~lQ~ilal~vL 127 (591)
.++..|+..-.-.+.+.....+-+++.....|++. +||+.+||-+.=|++.-+++-++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~p~~~~~~~~~~~~~ 83 (514)
T 3rlf_F 24 GLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFA-NRKAYAWRYVYPGMAGMGLFVLFPL 83 (514)
T ss_dssp HHHHHHTHHHHHTTTCHHHHHHHHHHHHHHHHHHH-CGGGCTHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHCccHHHHHHHHHHHHHHeEEEE-CCCcccHHHHHHHHHHHHHHHHHHH
Confidence 33345655555555555555666666666666665 7899999999888887666655544
Done!