Query psy10535
Match_columns 591
No_of_seqs 283 out of 1333
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 20:47:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10535.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10535hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 23.9 99 0.0072 28.3 8.1 55 67-122 12-66 (248)
2 d2nwwa1 f.49.1.1 (A:12-416) Pr 22.8 1.2E+02 0.0087 29.1 8.9 56 383-438 79-145 (405)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 12.4 2.7E+02 0.02 25.1 8.1 64 193-259 30-102 (248)
4 d1xmeb2 f.17.2.1 (B:3-36) Bact 10.8 74 0.0054 20.1 2.2 13 443-455 21-33 (34)
5 d1q90r_ f.23.12.1 (R:) ISP sub 7.3 1.3E+02 0.0098 20.0 2.5 37 343-379 2-39 (39)
6 d1uaza_ f.13.1.1 (A:) Archaerh 4.9 3.5E+02 0.026 23.8 5.0 17 476-492 184-200 (236)
7 d1pv7a_ f.38.1.2 (A:) Lactose 3.9 9.8E+02 0.071 19.8 12.0 16 358-373 146-161 (417)
8 d1gpma1 c.26.2.1 (A:208-404) G 3.1 2.4E+02 0.018 22.4 1.9 16 340-356 165-180 (197)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 2.9 1.3E+03 0.096 19.6 14.2 34 531-564 344-377 (447)
10 d1xioa_ f.13.1.1 (A:) Sensory 2.9 2.6E+02 0.019 24.4 2.0 15 477-491 173-187 (226)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=23.89 E-value=99 Score=28.33 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=40.0
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHH
Q psy10535 67 IAFVIFILIDAWDQKRRLISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAI 122 (591)
Q Consensus 67 ~~~~~f~~~d~~~~~~~l~sl~Gl~v~l~ia~l~S~nrk~I~Wr~V~~gl~lQ~il 122 (591)
-++..|...-.-.+.+.....+-+++..++-|++.+ ||..+||-+.=|+++-+++
T Consensus 12 ~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vy~s-~r~~p~kyi~PG~~~l~~F 66 (248)
T d2r6gf1 12 GLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFAN-RKAYAWRYVYPGMAGMGLF 66 (248)
T ss_dssp HHHHHHTHHHHHGGGCHHHHHHHHHHHHHHHHHHSS-SCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHheEEEEEc-cCccceehhhhHHHHHHHH
Confidence 444467666666666677777777777788888875 5999999988888764444
No 2
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.78 E-value=1.2e+02 Score=29.11 Aligned_cols=56 Identities=13% Similarity=0.155 Sum_probs=32.5
Q ss_pred HHHhhhhhhHHHHHHhhcCCcccccccc-cccccc----------cCCCCCCHHHHHHHhHHHhhHH
Q psy10535 383 ITASIMTAPSALSYSKILYPETEISKTT-ISNIKK----------WKSDDLNVIDAACKGAQIGTEM 438 (591)
Q Consensus 383 ltAsvmsapaal~iaki~~Pet~~~~~~-~~~~~~----------~~~~~~n~~~A~~~Ga~~g~~l 438 (591)
+..++.++-.++.++.++.|-...+.+. .++.+. .+--++|+++|+++|..-++-+
T Consensus 79 l~tt~iA~~igl~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~l~~~iP~Ni~~al~~~~~l~vi~ 145 (405)
T d2nwwa1 79 LLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIF 145 (405)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCCCCCCCCCCCCCCCCCCCCHHHHHGGGSCSCHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccchhhhccccccccchHHHHHHHhccCCHHHHhhcCCccchhh
Confidence 3345667777888888888854322211 010100 1123789999999886665544
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=12.37 E-value=2.7e+02 Score=25.12 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHhhhhhe---------eecchhHHHHHHhhHHHHHHHhhhc
Q psy10535 193 ISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVT---------IRLSLGRYVLECIGHHVQTFLEFAY 259 (591)
Q Consensus 193 ~sl~Gi~v~l~ia~llS~~rk~I~wr~Vi~gL~lQ~~laliv---------l~~~~G~~~~~~i~~~v~~ll~~~~ 259 (591)
....-+++..++-|... +||.++||++.=|+++=+++-++- .+...|...=+ .+.++.+++.+.
T Consensus 30 ~a~~~~~~~~~~~~vy~-s~r~~p~kyi~PG~~~l~~Fvi~Pi~yT~~iaFTNy~tgh~ltk--~~Ai~~l~~~~~ 102 (248)
T d2r6gf1 30 FAITTLILSSAGLYIFA-NRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQLTF--ERAQEVLLDRSW 102 (248)
T ss_dssp HHHHHHHHHHHHHHHHS-SSCCTTHHHHHHHHHHHHHHTHHHHHHHHHGGGBCCSSTTCBCH--HHHHHHHTTCEE
T ss_pred HHHHHHHHHHheEEEEE-ccCccceehhhhHHHHHHHHHHHhheeEEEEEEEEcCCCccccH--HHHHHHHHhccc
Confidence 33334444444555555 459999999998887655443332 24444543211 345666665443
No 4
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=10.80 E-value=74 Score=20.07 Aligned_cols=13 Identities=23% Similarity=0.787 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHH
Q psy10535 443 IANIIAFVSFVAF 455 (591)
Q Consensus 443 ~a~lIafvalial 455 (591)
.|||.+|+||++.
T Consensus 21 lamlfvfialiay 33 (34)
T d1xmeb2 21 LAMLFVFIALIAY 33 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 5789999999874
No 5
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.29 E-value=1.3e+02 Score=20.01 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=25.8
Q ss_pred cccccCChhhHHHHHh-hhhhhhHHHHHHHHHhcCCCc
Q psy10535 343 PYLPDLTRSELTAVML-GGFSTVAGTVFAAYTSLGVQA 379 (591)
Q Consensus 343 pyl~~mt~sel~~vm~-~G~atiagsvl~aY~~~g~~~ 379 (591)
+-.|+|.|-+++-+.+ ++-+-.+++.+.-|+.|=+||
T Consensus 2 ~~VpDMgrR~~MNLll~G~~~~~~~g~l~py~~fFvPP 39 (39)
T d1q90r_ 2 SEVPDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPP 39 (39)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CcccchhHHHHHHHHHHhccchhhhhhccceeEEecCC
Confidence 3467888888876655 445556788888888775554
No 6
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=4.85 E-value=3.5e+02 Score=23.83 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=14.5
Q ss_pred HHHhhhHhHHHHHhCCC
Q psy10535 476 FIFGKIFIPLTWIMGVE 492 (591)
Q Consensus 476 ~ilgyif~P~a~lmGvp 492 (591)
.+.+|..||++|++|.+
T Consensus 184 ~~v~W~iYPi~~~l~~~ 200 (236)
T d1uaza_ 184 VLVLWTAYPILWIIGTE 200 (236)
T ss_dssp HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhccC
Confidence 37899999999999764
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.90 E-value=9.8e+02 Score=19.78 Aligned_cols=16 Identities=13% Similarity=0.190 Sum_probs=7.9
Q ss_pred hhhhhhhHHHHHHHHH
Q psy10535 358 LGGFSTVAGTVFAAYT 373 (591)
Q Consensus 358 ~~G~atiagsvl~aY~ 373 (591)
..+.+.+.|..++++.
T Consensus 146 ~~~~~~~~~~~~~~~l 161 (417)
T d1pv7a_ 146 FGCVGWALGASIVGIM 161 (417)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccc
Confidence 3344445555555554
No 8
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}
Probab=3.08 E-value=2.4e+02 Score=22.39 Aligned_cols=16 Identities=31% Similarity=0.727 Sum_probs=12.9
Q ss_pred eeccccccCChhhHHHH
Q psy10535 340 LIKPYLPDLTRSELTAV 356 (591)
Q Consensus 340 likpyl~~mt~sel~~v 356 (591)
++|| |.+|||+|+..+
T Consensus 165 li~P-L~~l~K~eV~~l 180 (197)
T d1gpma1 165 LVEP-LKELFKDEVRKI 180 (197)
T ss_dssp EECT-TTTCCHHHHHHH
T ss_pred eehh-ccCCcHHHHHHH
Confidence 5899 556999998874
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=2.93 E-value=1.3e+03 Score=19.57 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=18.3
Q ss_pred hhHHHHHHHhcccChhhhHHHHhhhcccCCCccc
Q psy10535 531 SEAIATYSLCGFANPGSVGCLIATLNTLVPSQRR 564 (591)
Q Consensus 531 s~~I~t~aLcgFaN~~SiGi~ig~~~~lap~r~~ 564 (591)
...+....+.||...+.....--...-+.|++++
T Consensus 344 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~ 377 (447)
T d1pw4a_ 344 TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAA 377 (447)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 3445556666766555544443444456676543
No 10
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=2.89 E-value=2.6e+02 Score=24.42 Aligned_cols=15 Identities=33% Similarity=0.570 Sum_probs=12.9
Q ss_pred HHhhhHhHHHHHhCC
Q psy10535 477 IFGKIFIPLTWIMGV 491 (591)
Q Consensus 477 ilgyif~P~a~lmGv 491 (591)
+.+|..||++|++|.
T Consensus 173 ~v~W~~YPi~~~l~~ 187 (226)
T d1xioa_ 173 TVLWIGYPIVWIIGP 187 (226)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcc
Confidence 478899999999984
Done!