RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10535
(591 letters)
>gnl|CDD|233135 TIGR00804, nupC, nucleoside transporter. The Concentrative
Nucleoside Transporter (CNT) Family (TC 2.A.41) Members
of the CNT family mediate nucleoside uptake. In bacteria
they are energized by H+ symport, but in mammals they
are energized by Na+ symport. The different transporters
exhibit differing specificities for nucleosides. The E.
coli NupC permease transports all nucleosides (both
ribo- and deoxyribonucleosides) except hypoxanthine and
guanine nucleosides. The B. subtilis NupC is specific
for pyrimidine nucleosides (cytidine and uridine and the
corresponding deoxyribonucleosides). The mammalian
permease members of the CNT family also exhibit
differing specificities. Thus, rats possess at least two
NupC homologues, one specific for both purine and
pyrimidine nucleosides and one specific for purine
nucleosides. At least three paralogues have been
characterized from humans. One human homologue(CNT1)
transports pyrimidine nucleosides and adenosine, but
deoxyadenosine and guanosine are poor substrates of this
permease. Another (CNT2) is selective for purine
nucleosides. Alteration of just a few amino acyl
residues in TMSs 7 and 8 interconverts their
specificities [Transport and binding proteins,
Nucleosides, purines and pyrimidines].
Length = 401
Score = 358 bits (922), Expect = e-119
Identities = 166/398 (41%), Positives = 249/398 (62%), Gaps = 1/398 (0%)
Query: 192 LISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHV 251
LIS +G VFIL+ ++ S + W+ V+ +++Q +GL+ +R G + + + +
Sbjct: 1 LISFVGLVVFILIAFLCSSNKKAISWRTVVSALVLQFLLGLIVLRTPPGFWAFQGLADQI 60
Query: 252 QTFLEFAYQGAAFVYGDEIVFVYHVFAFKVLSVIFFMSFIIQICFYYGWLQSIFLKLGWL 311
Q L +A +G++FV+G +V VFAF+VL +I F S +I I +Y G +Q + K+GW
Sbjct: 61 QILLSYANEGSSFVFGPPLVQDLFVFAFQVLPIIIFFSALISILYYLGIMQWVIRKIGWF 120
Query: 312 LQVSLGTTVAESVNTCASVFLGMTEAPLLIKPYLPDLTRSELTAVMLGGFSTVAGTVFAA 371
LQ ++GTT ES + A++FLG TEAPL+I+PYL D+T SEL VM G +T+AG+V A
Sbjct: 121 LQKAMGTTKLESFSAAANIFLGQTEAPLVIRPYLGDMTDSELFTVMTSGMATIAGSVLGA 180
Query: 372 YTSLGVQAAHIITASIMTAPSALSYSKILYPETEISKTTISNIKKWKSDDLNVIDAACKG 431
Y S+GV A ++I AS+M AP AL+++K++YPE E SK K + D N +AA G
Sbjct: 181 YISMGVPATYLIAASVMAAPCALAFAKLIYPEVEESKEKSEEDVKLEEGDQNFFEAASNG 240
Query: 432 AQIGTEMVLGIIANIIAFVSFVAFCNAMLIWFGSLVGVEDLTIEFIFGKIFIPLTWIMGV 491
A G ++V + A +IAFV+ +A N +L W G VG L+ + IFG +F PL ++MGV
Sbjct: 241 ALAGVKVVANVAAMLIAFVALLALINGILSWVGGWVGYGGLSFQLIFGYVFRPLAFLMGV 300
Query: 492 EPSQCEEVARLIGLKTVINEFVAYKELGRVKKLGL-LSPRSEAIATYSLCGFANPGSVGC 550
S VA+L+G K +NEFVAY +L + + L LSP++EAI T++LCGFAN S+G
Sbjct: 301 PWSDAPLVAQLMGTKLAVNEFVAYLDLSQYLQTRLWLSPKTEAIITFALCGFANFSSIGI 360
Query: 551 LIATLNTLVPSQRRNTIDLAFRAFIGGCVVCLLTACIV 588
++ L +LVP ++ L RA G +V L++A I
Sbjct: 361 ILGGLGSLVPKRKSVISRLVLRALCAGTLVSLMSATIA 398
Score = 67.7 bits (166), Expect = 5e-12
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 84 LISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHV 143
LIS +G VFIL+ ++ S + W+ V+ +++Q +GL+ +R G + + + +
Sbjct: 1 LISFVGLVVFILIAFLCSSNKKAISWRTVVSALVLQFLLGLIVLRTPPGFWAFQGLADQI 60
Query: 144 QTFLEFAYQGAAFVYGDEIVTVRI-----SVQIILSIAFVIFIL 182
Q L +A +G++FV+G +V + II+ + +I IL
Sbjct: 61 QILLSYANEGSSFVFGPPLVQDLFVFAFQVLPIIIFFSALISIL 104
>gnl|CDD|224883 COG1972, NupC, Nucleoside permease [Nucleotide transport and
metabolism].
Length = 404
Score = 321 bits (824), Expect = e-104
Identities = 145/400 (36%), Positives = 230/400 (57%), Gaps = 3/400 (0%)
Query: 190 RRLISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGH 249
LIS+LG V + + ++FS + W+ VI +++Q+ + L + G++ L + +
Sbjct: 2 EILISILGLAVLLGIAFLFSSNRKAIRWRTVIGALVIQVLLALFMLYTPAGQWALRGLAN 61
Query: 250 HVQTFLEFAYQGAAFVYGDEI-VFVYHVFAFKVLSVIFFMSFIIQICFYYGWLQSIFLKL 308
V+ + +A G FV+G +FAF+VL I F+S +I I +Y G L + +
Sbjct: 62 GVEKLIAYANAGINFVFGSLADPKAGFIFAFRVLPPIIFISALISILYYIGILPLVIRII 121
Query: 309 GWLLQVSLGTTVAESVNTCASVFLGMTEAPLLIKPYLPDLTRSELTAVMLGGFSTVAGTV 368
G LQ +LGT+ ES + A++FLG TEAPL++KPYL ++RSEL VM G ++V+G++
Sbjct: 122 GGGLQKALGTSKLESFSAVANIFLGQTEAPLVVKPYLGKMSRSELFTVMASGMASVSGSI 181
Query: 369 FAAYTSLGVQAAHIITASIMTAPSALSYSKILYPETEISKTTISNIKKWKSDDLNVIDAA 428
Y S+GV +++ AS M AP L ++K++ P TE + ++ + N I+AA
Sbjct: 182 LGGYASMGVPPEYLLAASFMNAPGGLLFAKLINPYTEDEQDAEDDLSNDEEGPKNFIEAA 241
Query: 429 CKGAQIGTEMVLGIIANIIAFVSFVAFCNAMLIWFGSLVGVEDLTIEFIFGKIFIPLTWI 488
+GA G ++ L + A +IAFV+ +A N +L G G+ L++E I G +F PL ++
Sbjct: 242 AEGALTGLKLALNVGAMLIAFVALIALINGILGGVGGWFGISGLSLEQILGYVFAPLAFL 301
Query: 489 MGVEPSQCEEVARLIGLKTVINEFVAYKELGRVKKLGLLSPRSEAIATYSLCGFANPGSV 548
MGV S+ + LIG K V+NEFVA +L + L LS R+ AI T++LCGFAN S+
Sbjct: 302 MGVPWSEALQAGSLIGTKLVLNEFVAMLDLSKY--LKTLSERTVAIITFALCGFANFSSI 359
Query: 549 GCLIATLNTLVPSQRRNTIDLAFRAFIGGCVVCLLTACIV 588
G ++ L L P +R L +A + G +V LL+A I
Sbjct: 360 GIIVGGLKGLAPKRRSEVARLGLKALLAGTLVSLLSASIA 399
Score = 57.6 bits (140), Expect = 8e-09
Identities = 21/79 (26%), Positives = 42/79 (53%)
Query: 82 RRLISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGH 141
LIS+LG V + + ++FS + W+ VI +++Q+ + L + G++ L + +
Sbjct: 2 EILISILGLAVLLGIAFLFSSNRKAIRWRTVIGALVIQVLLALFMLYTPAGQWALRGLAN 61
Query: 142 HVQTFLEFAYQGAAFVYGD 160
V+ + +A G FV+G
Sbjct: 62 GVEKLIAYANAGINFVFGS 80
>gnl|CDD|219502 pfam07662, Nucleos_tra2_C, Na+ dependent nucleoside transporter
C-terminus. This family consists of nucleoside
transport proteins. Rat CNT 2 is a purine-specific
Na+-nucleoside cotransporter localised to the bile
canalicular membrane. CNT 1 is a a Na+-dependent
nucleoside transporter selective for pyrimidine
nucleosides and adenosine it also transports the
anti-viral nucleoside analogues AZT and ddC. This
alignment covers the C-terminus of this family of
transporters.
Length = 208
Score = 218 bits (558), Expect = 9e-68
Identities = 89/208 (42%), Positives = 127/208 (61%), Gaps = 4/208 (1%)
Query: 381 HIITASIMTAPSALSYSKILYPETEISKTTISNIKKWKSDDLNVIDAACKGAQIGTEMVL 440
+++ AS+M+AP+AL +K+L PETE +T + + NVIDAA GA G ++ L
Sbjct: 1 YLLAASVMSAPAALLIAKLLVPETEEPETDGEEDED-EEKPANVIDAAANGALDGLKLAL 59
Query: 441 GIIANIIAFVSFVAFCNAMLIWFGSLVGVEDLTIEFIFGKIFIPLTWIMGVEPSQCEEVA 500
+ A +IAFV+ +A N +L W G G+ L+++ I G IF PL W+MGV S+ +
Sbjct: 60 NVGAMLIAFVALIALINGLLGWIGG--GIPGLSLQLILGYIFAPLAWLMGVPWSEALQAG 117
Query: 501 RLIGLKTVINEFVAYKELGRVKKLGLLSPRSEAIATYSLCGFANPGSVGCLIATLNTLVP 560
L+G K V+NEFVAY +L ++ LSPRS AIATY+LCGFAN S+G LI L L P
Sbjct: 118 SLMGTKLVLNEFVAYLDLAKLIA-STLSPRSVAIATYALCGFANFSSIGILIGGLGGLAP 176
Query: 561 SQRRNTIDLAFRAFIGGCVVCLLTACIV 588
+R + L +A + G + LL+A I
Sbjct: 177 ERRSDIARLGLKALLAGTLASLLSAAIA 204
>gnl|CDD|201962 pfam01773, Nucleos_tra2_N, Na+ dependent nucleoside transporter
N-terminus. This family consists of nucleoside
transport proteins. Rat CNT 2 is a purine-specific
Na+-nucleoside cotransporter localised to the bile
canalicular membrane. Rat CNT 1 is a a Na+-dependent
nucleoside transporter selective for pyrimidine
nucleosides and adenosine it also transports the
anti-viral nucleoside analogues AZT and ddC. This
alignment covers the N terminus of this family.
Length = 75
Score = 66.2 bits (163), Expect = 9e-14
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 88 LGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFL 147
LG V +L+ ++ S+ + W+ V G+ +QL + L ++ GR +LE I V L
Sbjct: 1 LGIVVLLLIAFLLSENRKAINWRTVGGGLALQLLLALFVLKTPAGRDILEGISDGVNALL 60
Query: 148 EFAYQGAAFVYGD 160
++A G +FV+G
Sbjct: 61 DYANAGISFVFGG 73
Score = 66.2 bits (163), Expect = 9e-14
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 196 LGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFL 255
LG V +L+ ++ S+ + W+ V G+ +QL + L ++ GR +LE I V L
Sbjct: 1 LGIVVLLLIAFLLSENRKAINWRTVGGGLALQLLLALFVLKTPAGRDILEGISDGVNALL 60
Query: 256 EFAYQGAAFVYGD 268
++A G +FV+G
Sbjct: 61 DYANAGISFVFGG 73
>gnl|CDD|219507 pfam07670, Gate, Nucleoside recognition. This region in the
nucleoside transporter proteins are responsible for
determining nucleoside specificity in the human CNT1 and
CNT2 proteins. In the FeoB proteins, which are believed
to be Fe2+ transporters, it includes the membrane pore
region, so the function of this region is likely to be
more general than just nucleoside specificity. This
family may represent the pore and gate, with a wide
potential range of specificity. Hence its name 'Gate'.
Length = 104
Score = 48.4 bits (116), Expect = 3e-07
Identities = 29/101 (28%), Positives = 37/101 (36%), Gaps = 2/101 (1%)
Query: 278 AFKVLSVIFFMSFIIQICFYYGWLQSIFLKLGWLLQVSLGTTVAESVNTCASVFLGMTEA 337
KVL +I F S +I I Y G L I L L++ G S+ + G
Sbjct: 1 LLKVLPIIVFFSVLISILEYSGLLARIGKLLDPLMRPLFGLPGEASIPLLSGFGAGEVGI 60
Query: 338 PLLIKPY-LPDLTRSELTAVMLGGFS-TVAGTVFAAYTSLG 376
LL Y LT E A++L G T G Y
Sbjct: 61 GLLATLYEEGKLTPREALALLLFGLLYTPCGATLPVYVGEL 101
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional.
Length = 375
Score = 34.0 bits (77), Expect = 0.20
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 495 QCEEV---ARLIGLKTVINEFVAYKELGRVKKLGLLSPRSEAIATYSLCGFAN--PGSVG 549
+C E+ +LIGL+ +AY + + L R E L G PG
Sbjct: 256 RCSEILFQPKLIGLEVAGIHHLAYSSIKKCD----LDLRQELCRNIVLSGGTTLFPGIAN 311
Query: 550 CLIATLNTLVPSQRRNTI----DLAFRAFIGGCVVCLLT 584
L L LVPSQ + + D F A+IGG + C L+
Sbjct: 312 RLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTLS 350
>gnl|CDD|233148 TIGR00844, c_cpa1, na(+)/h(+) antiporter. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals. Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in (1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles. This model is specific for the
fungal members of this family [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 810
Score = 31.8 bits (72), Expect = 1.3
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 330 VFLGMTEAPLLIKPYLPDLTRSELTAVMLGGFSTVA-GTVFAAYTSLGVQAAHI 382
+FL A L++KP +PD+ +S A+ +G F + G VFAA S +H+
Sbjct: 337 IFLRRIPAVLILKPLIPDI-KSWREAMFIGHFGPIGVGAVFAAILSKSQLESHL 389
Score = 30.3 bits (68), Expect = 3.3
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 445 NIIAFVSFVAF---CNAMLIWFGSLVGVEDLTIEFIFGKIF 482
NII SF+AF FGS++GV+DL + F G F
Sbjct: 237 NIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAF 277
>gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit
(UDP-forming). Cellulose synthase catalyzes the
beta-1,4 polymerization of glucose residues in the
formation of cellulose. In bacteria, the substrate is
UDP-glucose. The synthase consists of two subunits (or
domains in the frequent cases where it is encoded as a
single polypeptide), the catalytic domain modelled here
and the regulatory domain (pfam03170). The regulatory
domain binds the allosteric activator cyclic di-GMP. The
protein is membrane-associated and probably assembles
into multimers such that the individual cellulose
strands can self-assemble into multi-strand fibrils.
Length = 713
Score = 30.8 bits (70), Expect = 2.4
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 30 IKPFLFPILLRYSIDTTTKAFKNFI-MTVRISVQIILS-IAFVIFILIDAWDQKRRLISL 87
P LF LL A I V + Q+I++ AF++ +++ ++ KR + L
Sbjct: 1 GPPALFKGLLFIIAVAGLLALLALITAPVTLETQLIIAGSAFLLLLILKRFNGKRPRLLL 60
Query: 88 LGFGVFILLGYVFSKYPNRVPW 109
L VFI L Y++ + +P+
Sbjct: 61 LVLSVFISLRYLWWRLTETLPF 82
Score = 30.4 bits (69), Expect = 3.3
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 163 VTVRISVQIILS-IAFVIFILIDAWDQKRRLISLLGFGVFILLGYVFSKYPNRVPW 217
V + Q+I++ AF++ +++ ++ KR + LL VFI L Y++ + +P+
Sbjct: 27 APVTLETQLIIAGSAFLLLLILKRFNGKRPRLLLLVLSVFISLRYLWWRLTETLPF 82
>gnl|CDD|237205 PRK12792, flhA, flagellar biosynthesis protein FlhA; Reviewed.
Length = 694
Score = 30.9 bits (70), Expect = 2.6
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 24/119 (20%)
Query: 54 IMTVRISVQIILSIAFVIFILIDA-WDQKRRLISLLGFGVFILLGYVFSKYPNRVPWKIV 112
+ V I + + SIA + IL+ A W Q+ FS +P ++
Sbjct: 35 VPAVLIDIGLAFSIALSVLILMVALWIQRP---------------LEFSAFPT-----VL 74
Query: 113 IWGVIMQLAIGLVTIRLSL--GRYVLECIGHHVQTFLEFAYQGAAFVYGDEIVTVRISV 169
+ +++LA+ + T RL L G+ ++ GH + F +F G FV G + + I+V
Sbjct: 75 LIATLLRLALNIATTRLILSNGQEGVDAAGHVIAGFSQFVMSG-DFVIGLVVFAILITV 132
Score = 30.5 bits (69), Expect = 3.0
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 25/114 (21%)
Query: 162 IVTVRISVQIILSIAFVIFILIDA-WDQKRRLISLLGFGVFILLGYVFSKYPNRVPWKIV 220
+ V I + + SIA + IL+ A W Q+ FS +P ++
Sbjct: 35 VPAVLIDIGLAFSIALSVLILMVALWIQRP---------------LEFSAFPT-----VL 74
Query: 221 IWGVIMQLAIGLVTIRLSL--GRYVLECIGHHVQTFLEFAYQGAAFVYGDEIVF 272
+ +++LA+ + T RL L G+ ++ GH + F +F G FV G +VF
Sbjct: 75 LIATLLRLALNIATTRLILSNGQEGVDAAGHVIAGFSQFVMSG-DFVIG-LVVF 126
>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily
hydrolase [General function prediction only].
Length = 700
Score = 30.0 bits (68), Expect = 4.5
Identities = 41/231 (17%), Positives = 83/231 (35%), Gaps = 25/231 (10%)
Query: 152 QGAAFVYGDEIVTVRISVQI----ILSIAFVIFILIDAWDQKRRLISLLGFGVFILLGYV 207
+G V EI+T V + +LS++ I L+ L+ L+ F + + Y
Sbjct: 243 KGQIIVKEGEIITDEDYVILDLLGLLSLSVNILPLL-------GLLILVIFLILLFALYE 295
Query: 208 FSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFLEFAY-QGAAFVY 266
++ ++ L++ ++T+ +L +G+ + A
Sbjct: 296 RRTKSPLKLRNSLL---LLYLSLAILTL------SLLRIVGY--FNYSASGLLVPPALGP 344
Query: 267 GDEIVFVYHVFAFKVLSVIFFMSFIIQICFYYGWLQSIFLKLGWLLQVSLGTTVAESVNT 326
I+ V+ A S+I + Y + I L + V L S
Sbjct: 345 MLLILLVFLRIAIFSSSMIAIALLYLFGGSYNSEIALIALLSSFSALVLLRKMSRRSDIL 404
Query: 327 CASVFLGMTEAPLLIKPYLPDLTRSELTAVMLGGFSTVAGTVFAAYTSLGV 377
+ +FL + LL+ + T S A+ F+ ++G + + LG+
Sbjct: 405 KSGLFLALM-NMLLLLSLIFAFTLSWYDALQDAIFAFLSG-LLSGILVLGL 453
>gnl|CDD|224685 COG1771, COG1771, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 471
Score = 29.1 bits (65), Expect = 7.1
Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 27/108 (25%)
Query: 105 NRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHHVQTFLEFAYQGAAFVYGDEIVT 164
NR+P ++ GVI+ + V C+ F DE+
Sbjct: 354 NRLPSNYILGGVIL----------YGISS-VDNCVDVLDLPFSLE----------DELSK 392
Query: 165 VRISVQIILSIAFVIFILIDAWDQKRRL---ISLLGFGVFILLGYVFS 209
+I ++I + V LID D K + + F V L VFS
Sbjct: 393 YQIPLKI---LGGVALYLIDDEDLKEGIRKKKDIEDFLVSGLHKEVFS 437
>gnl|CDD|193524 cd05646, M20_AcylaseI_like, M20 Aminoacylase-I like subfamily.
Peptidase M20 family, Aminoacylase-I like (AcyI-like;
Acylase I; N-acyl-L-amino-acid amidohydrolase; EC
3.5.1.14) subfamily. Acylase I is involved in the
hydrolysis of N-acylated or N-acetylated amino acids
(except L-aspartate) and is considered as a potential
target of antimicrobial agents. Porcine AcyI is also
shown to deacetylate certain quorum-sensing
N-acylhomoserine lactones, while the rat enzyme has been
implicated in degradation of chemotactic peptides of
commensal bacteria. Prokaryotic arginine synthesis
usually involves the transfer of an acetyl group to
glutamate by ornithine acetyltransferase in order to
form ornithine. However, Escherichia coli
acetylornithine deacetylase (acetylornithinase, ArgE)
(EC 3.5.1.16) catalyzes the deacylation of
N2-acetyl-L-ornithine to yield ornithine and acetate.
Phylogenetic evidence suggests that the clustering of
the arg genes in one continuous sequence pattern arose
in an ancestor common to Enterobacteriaceae and
Vibrionaceae, where ornithine acetyltransferase was lost
and replaced by a deacylase.
Length = 391
Score = 28.8 bits (65), Expect = 8.5
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 456 CNAMLIWFGSLVGVEDLTIEFIFGKIFIPLTWIMGVEPS 494
L +G+ IE + GK + LTW G +P
Sbjct: 26 AVEFLKRQAKELGLPVKVIEVVPGKPIVVLTW-EGSDPE 63
>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is
a conserved membrane protein. The yfhO gene is
transcribed in Difco sporulation medium and the
transcription is affected by the YvrGHb two-component
system. Some members of this family have been annotated
as glycosyl transferases of the PMT family.
Length = 835
Score = 29.1 bits (66), Expect = 8.9
Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 23/94 (24%)
Query: 10 LGILLIAAVFIYWFVFYYTVIKPFLFPILLRYSIDTTTKAFKNFIMTVRISVQIILSIAF 69
+ ILL+ +FI F+ +F+ + + ++ + +
Sbjct: 370 ISILLLVLLFILVFLLNL--------------------SKHYSFLTQTNLLLTLLFLLLY 409
Query: 70 VIFILIDAWDQKRR---LISLLGFGVFILLGYVF 100
++ +L+ Q R+ +I LL V L +
Sbjct: 410 LLLLLLFLKKQIRKKLVIILLLLVVVLELGLNAY 443
>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class)
[Posttranslational modification, protein turnover,
chaperones].
Length = 436
Score = 28.9 bits (65), Expect = 9.1
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 63 IILSIAFVIFILIDAWDQKRRLISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAI 122
++L I I I+ +A+ +I LLG +FI+ + +P+ +V + + LAI
Sbjct: 285 LLLIILGAILIVAEAFVPGFGVIGLLGIILFII--GLLLLFPSGTMGYLVSISLFLTLAI 342
Query: 123 GLVTIRLSLGRY 134
+ ++ LGR
Sbjct: 343 LSILFKVFLGRL 354
Score = 28.9 bits (65), Expect = 9.1
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 171 IILSIAFVIFILIDAWDQKRRLISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAI 230
++L I I I+ +A+ +I LLG +FI+ + +P+ +V + + LAI
Sbjct: 285 LLLIILGAILIVAEAFVPGFGVIGLLGIILFII--GLLLLFPSGTMGYLVSISLFLTLAI 342
Query: 231 GLVTIRLSLGRY 242
+ ++ LGR
Sbjct: 343 LSILFKVFLGRL 354
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 28.9 bits (65), Expect = 9.8
Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 11/171 (6%)
Query: 48 KAFKNFIMTVRISVQIILSIAFVIFILIDAWDQKRRLISLLGFGVFIL-LGYVFSKYPNR 106
K I+ + +S + L + +I +IDA + L + +L L +
Sbjct: 14 KLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQS 73
Query: 107 VPWKIVIWGVIMQLAIGLV--TIRLSLGRYVLECIGHHVQTFLEFAYQGAAFVYGDEIVT 164
+ ++ L L +RL L + G + + V V
Sbjct: 74 YLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLV---STVL 130
Query: 165 VRISVQIILSIAFVIFILIDAWDQKRRLISLLGFGVFILLGYVFSKYPNRV 215
V + I+L I ++ + +W ++L+ + LL V S +
Sbjct: 131 VLVFTSILLLIGSLVLLFSLSW-----RLALILLLILPLLALVLSLLARKS 176
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.145 0.450
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,183,730
Number of extensions: 3266189
Number of successful extensions: 6166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5937
Number of HSP's successfully gapped: 434
Length of query: 591
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 489
Effective length of database: 6,413,494
Effective search space: 3136198566
Effective search space used: 3136198566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 62 (27.6 bits)