RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10535
(591 letters)
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter,
drug transport uridine, nucleosides, membrane protein;
HET: URI DMU; 2.44A {Vibrio cholerae}
Length = 424
Score = 404 bits (1039), Expect = e-137
Identities = 135/410 (32%), Positives = 224/410 (54%), Gaps = 12/410 (2%)
Query: 191 RLISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHH 250
+SL+G V + + + S + + V +Q ++G + + G+ +L
Sbjct: 9 LFMSLIGMAVLLGIAVLLSSNRKAINLRTVGGAFAIQFSLGAFILYVPWGQELLRGFSDA 68
Query: 251 VQTFLEFAYQGAAFVYGDEIVFVY--------HVFAFKVLSVIFFMSFIIQICFYYGWLQ 302
V + + G +F++G + +FAF+VL + F S +I + +Y G +Q
Sbjct: 69 VSNVINYGNDGTSFLFGGLVSGKMFEVFGGGGFIFAFRVLPTLIFFSALISVLYYLGVMQ 128
Query: 303 SIFLKLGWLLQVSLGTTVAESVNTCASVFLGMTEAPLLIKPYLPDLTRSELTAVMLGGFS 362
+ LG LQ +LGT+ AES++ A++F+G TEAPL+++P++P +T+SEL AVM GG +
Sbjct: 129 WVIRILGGGLQKALGTSRAESMSAAANIFVGQTEAPLVVRPFVPKMTQSELFAVMCGGLA 188
Query: 363 TVAGTVFAAYTSLGVQAAHIITASIMTAPSALSYSKILYPETEISKT-TISNIKKWKSDD 421
++AG V A Y S+GV+ +++ AS M AP L ++K++ PETE + +
Sbjct: 189 SIAGGVLAGYASMGVKIEYLVAASFMAAPGGLLFAKLMMPETEKPQDNEDITLDGGDDKP 248
Query: 422 LNVIDAACKGAQIGTEMVLGIIANIIAFVSFVAFCNAMLIWFGSLVGVEDLTIEFIFGKI 481
NVIDAA GA G ++ L + A +IAF+ +A N ML G G+ +L +E + G +
Sbjct: 249 ANVIDAAAGGASAGLQLALNVGAMLIAFIGLIALINGMLGGIGGWFGMPELKLEMLLGWL 308
Query: 482 FIPLTWIMGVEPSQCEEVARLIGLKTVINEFVAYKELGRVKKLG---LLSPRSEAIATYS 538
F PL +++GV ++ IGLKTV NEFVAY + +LS +++AI +++
Sbjct: 309 FAPLAFLIGVPWNEATVAGEFIGLKTVANEFVAYSQFAPYLTEAAPVVLSEKTKAIISFA 368
Query: 539 LCGFANPGSVGCLIATLNTLVPSQRRNTIDLAFRAFIGGCVVCLLTACIV 588
LCGFAN S+ L+ L +L P +R + + +A I G + L+ A I
Sbjct: 369 LCGFANLSSIAILLGGLGSLAPKRRGDIARMGVKAVIAGTLSNLMAATIA 418
Score = 82.8 bits (205), Expect = 4e-17
Identities = 17/100 (17%), Positives = 38/100 (38%)
Query: 83 RLISLLGFGVFILLGYVFSKYPNRVPWKIVIWGVIMQLAIGLVTIRLSLGRYVLECIGHH 142
+SL+G V + + + S + + V +Q ++G + + G+ +L
Sbjct: 9 LFMSLIGMAVLLGIAVLLSSNRKAINLRTVGGAFAIQFSLGAFILYVPWGQELLRGFSDA 68
Query: 143 VQTFLEFAYQGAAFVYGDEIVTVRISVQIILSIAFVIFIL 182
V + + G +F++G + V F +L
Sbjct: 69 VSNVINYGNDGTSFLFGGLVSGKMFEVFGGGGFIFAFRVL 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 2e-04
Identities = 56/404 (13%), Positives = 107/404 (26%), Gaps = 145/404 (35%)
Query: 239 LGRYVLECIGHHVQ--------TFLEFAYQG--AAFVYGDEIVFVYHVFAFKVL----SV 284
+G++ L + V+ L ++ G++I H A K+L +
Sbjct: 61 VGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI----HALAAKLLQENDTT 115
Query: 285 IFFMSFIIQICFYYGWLQSIFLKLGWLLQVSLGTTVAESVNTCASVF--LGMTEAPLLIK 342
+ +I+ Y +L V E ++F G T+
Sbjct: 116 LVKTKELIKN--YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD----- 168
Query: 343 PYLPDLTRSELTAVMLGGFSTVAGTVFAAYTSLGVQAAHIITASIMTAPSALSYSKILYP 402
Y +L +L + Y L ++ ++ ++
Sbjct: 169 -YFEEL--RDL---------------YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 403 ETEISKTTISNIKKW--------KSDDLNVIDAACKGAQIGTEMVLGIIANIIAFVSFVA 454
+ NI +W D L I +C IG +I +V
Sbjct: 211 QG-------LNILEWLENPSNTPDKDYLLSIPISCPL--IG----------VIQLAHYVV 251
Query: 455 FCN-------------------------AMLI-----W--FGSLVGVEDLTIEFIFGKIF 482
A+ I W F V I +F
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV---RKAITVLF---- 304
Query: 483 IPLTWIMGVEPSQCEEVARLIGLK-TVINEFVAYKELGRVKKLGLLSPRSEAIATY--SL 539
+I GV C E L +++ + + +E + + S+
Sbjct: 305 ----FI-GVR---CYEAYPNTSLPPSILEDSLE---------------NNEGVPSPMLSI 341
Query: 540 CGFANPGSVGCLIATLNTLVPSQRRNTIDL--AFRAFIGGCVVC 581
V + N+ +P+ ++ I L + VV
Sbjct: 342 SN-LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL----VVS 380
Score = 40.8 bits (95), Expect = 0.002
Identities = 70/460 (15%), Positives = 128/460 (27%), Gaps = 151/460 (32%)
Query: 142 HVQTFLEFAYQGAAFVYGDEIV----TVRISVQ-IILSIAFVIFILIDAWDQKRRLISLL 196
+ Q F QG Y +E+ T + V +I A + LI ++ +
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-Q 211
Query: 197 GFGVFILLGYVFSKYPNRVP-----------WKIVIWGVIMQLAIGLVTIRLSLGRYVLE 245
G + L + P+ P + IG++ L YV+
Sbjct: 212 GLNILEWL-----ENPSNTPDKDYLLSIPISCPL----------IGVI----QLAHYVVT 252
Query: 246 CIGHHVQTFLEFAYQGAAFVYGDEIVFVYHVFAFKVLSVIFFM-----SFIIQICFYYGW 300
+Y A + + V +V SF + +
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGL----------VTAVAIAETDSWESFFVSVRKAITV 302
Query: 301 LQSIFLKLGWLLQVSLGTTVAESVNTCASVFLGMTEA-PLL-IKPYLPDLTRSELTAVML 358
L F +G + T S+ P+L I +LT+ ++ +
Sbjct: 303 L---FF-IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS----NLTQEQVQD-YV 353
Query: 359 GGFSTVAGTVFAAYTSL--GVQAAHIIT---ASI---------MTAPSALSYSKILYPE- 403
++ SL G + +++ S+ APS L S+I + E
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAK-NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 404 ----------------TEISKTTISNIKK--------WKSDDLN--VIDAACKGA--QIG 435
+ + I K + + D+ V D G+ ++
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD-GSDLRVL 471
Query: 436 TEMVLGIIANIIAFVSFVAFCNAMLIW-------------FG--SLVGVEDLTIEFIFGK 480
+ + I + I + W FG G+ LT G
Sbjct: 472 SGSISERIVDCI--------IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Query: 481 IFIPLTWIMGVEPSQCEEVARLI--G-LKTVINEFVAYKE 517
GV R+I G L ++ +K+
Sbjct: 524 ---------GV---------RVIVAGTLDINPDDDYGFKQ 545
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.004
Identities = 68/467 (14%), Positives = 128/467 (27%), Gaps = 151/467 (32%)
Query: 3 VIDWCNGLGILLIAAVFIYWFVFYYTVIKPFLFPIL--LRYSIDTTTKAFKNFIMTVRIS 60
+D C + I+W + +L L Y ID N+ S
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID------PNWTSRSDHS 220
Query: 61 VQIILSIAFVIFILIDAWDQKRRLISLLGFGVFILLGYVFSKYPNRVPWKIV---IW--G 115
I L I + RRL+ Y N + +V +
Sbjct: 221 SNIKLRIH-------SIQAELRRLLKS-------------KPYENCL---LVLLNVQNAK 257
Query: 116 VIMQLAIG---LVTIR-------LSLGRYVLECIGHHVQTFLEFAYQG--AAFV---YGD 160
+ L+T R LS + HH T + ++ D
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 161 ---EIVTVRISVQIILSIAFVIFILIDAWD-----QKRRLISLLGFGV-----------F 201
E++T + + + IA I + WD +L +++ + F
Sbjct: 318 LPREVLT--TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 202 ILLGYVFSKYPNRVPWKI--VIWG-----VIMQLAIGLVTIRLSL-------GRYVLECI 247
L VF + +P + +IW +M + L + SL +
Sbjct: 376 DRLS-VFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLH--KYSLVEKQPKESTISI--- 428
Query: 248 GHHVQ---------------TFLEFAYQGAAFVYGDEIV-----------FVYHVFAFKV 281
+ + ++ Y D+++ +H+
Sbjct: 429 -PSIYLELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN--- 483
Query: 282 LSVIFFMSFIIQICFYYGWLQSIFLKLGWLLQVSLGTTVAESVNTCASVFLGMTEAPLL- 340
I+ + +FL +L Q + A N S+ L
Sbjct: 484 ----------IEHPERMTLFRMVFLDFRFLEQKIRHDSTA--WNASGSI------LNTLQ 525
Query: 341 -IKPYLPDLTRSELTAVM----LGGFSTVAGT--VFAAYTSLGVQAA 380
+K Y P + ++ + F + + YT L ++ A
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL-LRIA 571
Score = 30.2 bits (67), Expect = 2.6
Identities = 62/387 (16%), Positives = 113/387 (29%), Gaps = 96/387 (24%)
Query: 244 LECIGHHVQTFLEFAYQGAAFVYGDEIVFVYHV-----FAFKVL------SVIFFMSFII 292
+C VQ + D I+ F L V F+ ++
Sbjct: 33 FDC--KDVQDMPKSILSKEEI---DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 293 QICFYYGWLQSIFLKLGWLLQVSLGTTVAES----VNTCASVFLGMT---EAPLL-IKPY 344
+I Y +L S Q S+ T + + VF P L ++
Sbjct: 88 RI--NYKFLMSPIKTE--QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 345 LPDLTRSELTAV--MLG-GFSTVAGTVFAAYTSLGVQAAHI--IT-------ASIMTAPS 392
L +L ++ + +LG G + VA V +Y I + +++
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 393 ALSY--SKILYPETEISKTTISNIKKWKS------------------DD------LNVID 426
L Y ++ S I ++ + N +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 427 AACKGAQIGTEMVLGII---ANIIAFVSFVAFCNAMLIWFGSLVGVEDLTIEFIFGKIF- 482
+CK +L + + F+S + L S+ D + K
Sbjct: 264 LSCK--------IL-LTTRFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKS-LLLKYLD 312
Query: 483 -----IPLTWIMGVEPSQCEEVARLI--GLKTVIN-EFVAYKELGRVKKLGL--LSPRSE 532
+P ++ P + +A I GL T N + V +L + + L L P +E
Sbjct: 313 CRPQDLPRE-VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-AE 370
Query: 533 AIATYSLCG-FANPGSVGCLIATLNTL 558
+ F P S L+ +
Sbjct: 371 YRKMFDRLSVF--PPSAHIPTILLSLI 395
Score = 29.1 bits (64), Expect = 5.2
Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 24/137 (17%)
Query: 463 FG--SLVG--VEDLTIEFIF-GKIFIPLTWI-MGVEPSQCEEVARLIGLKTVINEFVAYK 516
G + ++ KIF W+ + + L L+ ++ +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIF----WLNLK---NCNSPETVLEMLQKLLYQIDP-N 212
Query: 517 ELGRVKKLGLLSPRSEAIATYSLCGFANPGSVGCLIATLNTLVPSQRRNTIDLAFRAFIG 576
R + R +I + CL+ LN V Q + AF
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--V--QNAKAWN----AFNL 264
Query: 577 GCVVCLLT--ACIVDNI 591
C + L T + D +
Sbjct: 265 SCKILLTTRFKQVTDFL 281
>3cuc_A Protein of unknown function with A FIC domain; FIC protein family,
structural genomics, joint center for ST genomics, JCSG;
HET: MSE; 2.71A {Bacteroides thetaiotaomicron vpi-5482}
Length = 291
Score = 28.3 bits (63), Expect = 6.3
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 10/37 (27%)
Query: 4 IDWCNG------LGILLIAAVFIYWFVFYYTVIKPFL 34
+DW N L + +AA+ Y ++ I PF
Sbjct: 164 VDWYNLEADKGILTPVELAALLHYRYIR----IHPFE 196
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS
and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A
{Methanosarcina acetivorans}
Length = 194
Score = 27.6 bits (61), Expect = 8.5
Identities = 13/91 (14%), Positives = 29/91 (31%)
Query: 10 LGILLIAAVFIYWFVFYYTVIKPFLFPILLRYSIDTTTKAFKNFIMTVRISVQIILSIAF 69
+ L FI F+ + V K + + S F+ ++ + + L +
Sbjct: 1 MNENLWKICFIVMFIIWVFVRKVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTA 60
Query: 70 VIFILIDAWDQKRRLISLLGFGVFILLGYVF 100
V +D+++ L + L
Sbjct: 61 VFSSYLDSFNINLPDSIRLFALIVTFLNIGL 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.145 0.450
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,309,143
Number of extensions: 582133
Number of successful extensions: 1008
Number of sequences better than 10.0: 1
Number of HSP's gapped: 995
Number of HSP's successfully gapped: 25
Length of query: 591
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 492
Effective length of database: 3,937,614
Effective search space: 1937306088
Effective search space used: 1937306088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.1 bits)